HEADER TRANSCRIPTION 31-AUG-14 4UYF TITLE N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH I-BET726 (GSK1324726A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL BROMODOMAIN, UNP RESIDUES 67-200; COMPND 5 SYNONYM: O27.1.1, REALLY INTERESTING NEW GENE 3 PROTEIN, HUMAN BRD2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 9 CHAIN: B, C; COMPND 10 FRAGMENT: N-TERMINAL BROMODOMAIN, UNP RESIDUES 67-200; COMPND 11 SYNONYM: O27.1.1, REALLY INTERESTING NEW GENE 3 PROTEIN, HUMAN BRD2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, INHIBITOR, HISTONE, EPIGENETIC READER, BET, BRD2, KEYWDS 2 BROMODOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHUNG,P.BAMBOROUGH,R.GOSMINI REVDAT 3 15-MAY-19 4UYF 1 REMARK REVDAT 2 22-OCT-14 4UYF 1 JRNL REVDAT 1 08-OCT-14 4UYF 0 JRNL AUTH R.GOSMINI,V.L.NGUYEN,J.TOUM,C.SIMON,J.M.BRUSQ,G.KRYSA, JRNL AUTH 2 O.MIRGUET,A.M.RIOU-EYMARD,E.V.BOURSIER,L.TROTTET, JRNL AUTH 3 P.BAMBOROUGH,H.CLARK,C.W.CHUNG,L.CUTLER,E.H.DEMONT,R.KAUR, JRNL AUTH 4 A.J.LEWIS,M.B.SCHILLING,P.E.SODEN,S.TAYLOR,A.L.WALKER, JRNL AUTH 5 M.D.WALKER,R.K.PRINJHA,E.NICODEME JRNL TITL THE DISCOVERY OF I-BET726 (GSK1324726A), A POTENT JRNL TITL 2 TETRAHYDROQUINOLINE APOA1 UP-REGULATOR AND SELECTIVE BET JRNL TITL 3 BROMODOMAIN INHIBITOR. JRNL REF J.MED.CHEM. V. 57 8111 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25249180 JRNL DOI 10.1021/JM5010539 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 46600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3084 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2085 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4196 ; 1.014 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5101 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 3.961 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;36.338 ;24.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;10.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3367 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 631 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5967 5.7685 2.9824 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.0074 REMARK 3 T33: 0.0346 T12: 0.0076 REMARK 3 T13: -0.0017 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.4453 L22: 0.2992 REMARK 3 L33: 0.9301 L12: -0.2107 REMARK 3 L13: -0.3344 L23: 0.0557 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: -0.0184 S13: -0.0174 REMARK 3 S21: 0.0075 S22: 0.0159 S23: 0.0429 REMARK 3 S31: 0.0463 S32: -0.0267 S33: 0.0663 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 183 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7936 8.4768 10.6284 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0149 REMARK 3 T33: 0.0388 T12: 0.0028 REMARK 3 T13: -0.0065 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.3479 L22: 0.4602 REMARK 3 L33: 0.8592 L12: -0.2896 REMARK 3 L13: 0.2363 L23: -0.1060 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: -0.0323 S13: -0.0210 REMARK 3 S21: 0.0191 S22: 0.0748 S23: -0.0237 REMARK 3 S31: -0.0498 S32: 0.0022 S33: -0.0555 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 75 C 181 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9436 19.3126 23.1046 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: 0.0367 REMARK 3 T33: 0.0089 T12: 0.0110 REMARK 3 T13: -0.0001 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.1587 L22: 0.4036 REMARK 3 L33: 0.8641 L12: -0.0461 REMARK 3 L13: 0.3402 L23: 0.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.0191 S13: -0.0071 REMARK 3 S21: -0.0214 S22: 0.0292 S23: 0.0127 REMARK 3 S31: -0.0403 S32: 0.0653 S33: -0.0140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 67.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS PH 5.5, 18% PEG3350, REMARK 280 0.2M (NH4)2SO4 20C, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.03200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.79850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.03200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.79850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2099 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 SER A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 HIS A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 GLY A 58 REMARK 465 LEU A 59 REMARK 465 VAL A 60 REMARK 465 PRO A 61 REMARK 465 ARG A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 HIS A 65 REMARK 465 MET A 66 REMARK 465 SER A 67 REMARK 465 ASN A 68 REMARK 465 PRO A 69 REMARK 465 LYS A 70 REMARK 465 THR A 190 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 SER A 195 REMARK 465 HIS A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 GLY A 199 REMARK 465 ALA A 200 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 SER B 49 REMARK 465 HIS B 50 REMARK 465 HIS B 51 REMARK 465 HIS B 52 REMARK 465 HIS B 53 REMARK 465 HIS B 54 REMARK 465 HIS B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 GLY B 58 REMARK 465 LEU B 59 REMARK 465 VAL B 60 REMARK 465 PRO B 61 REMARK 465 ARG B 62 REMARK 465 GLY B 63 REMARK 465 SER B 64 REMARK 465 HIS B 65 REMARK 465 MET B 66 REMARK 465 SER B 67 REMARK 465 ASN B 68 REMARK 465 PRO B 69 REMARK 465 LYS B 70 REMARK 465 LYS B 71 REMARK 465 PRO B 72 REMARK 465 GLY B 73 REMARK 465 ARG B 74 REMARK 465 VAL B 75 REMARK 465 GLU B 184 REMARK 465 GLN B 185 REMARK 465 GLU B 186 REMARK 465 LEU B 187 REMARK 465 VAL B 188 REMARK 465 VAL B 189 REMARK 465 THR B 190 REMARK 465 ILE B 191 REMARK 465 PRO B 192 REMARK 465 LYS B 193 REMARK 465 ASN B 194 REMARK 465 SER B 195 REMARK 465 HIS B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 GLY B 199 REMARK 465 ALA B 200 REMARK 465 GLY C 47 REMARK 465 SER C 48 REMARK 465 SER C 49 REMARK 465 HIS C 50 REMARK 465 HIS C 51 REMARK 465 HIS C 52 REMARK 465 HIS C 53 REMARK 465 HIS C 54 REMARK 465 HIS C 55 REMARK 465 SER C 56 REMARK 465 SER C 57 REMARK 465 GLY C 58 REMARK 465 LEU C 59 REMARK 465 VAL C 60 REMARK 465 PRO C 61 REMARK 465 ARG C 62 REMARK 465 GLY C 63 REMARK 465 SER C 64 REMARK 465 HIS C 65 REMARK 465 MET C 66 REMARK 465 SER C 67 REMARK 465 ASN C 68 REMARK 465 PRO C 69 REMARK 465 LYS C 70 REMARK 465 LYS C 71 REMARK 465 PRO C 72 REMARK 465 GLY C 73 REMARK 465 ARG C 74 REMARK 465 GLN C 182 REMARK 465 GLU C 183 REMARK 465 GLU C 184 REMARK 465 GLN C 185 REMARK 465 GLU C 186 REMARK 465 LEU C 187 REMARK 465 VAL C 188 REMARK 465 VAL C 189 REMARK 465 THR C 190 REMARK 465 ILE C 191 REMARK 465 PRO C 192 REMARK 465 LYS C 193 REMARK 465 ASN C 194 REMARK 465 SER C 195 REMARK 465 HIS C 196 REMARK 465 LYS C 197 REMARK 465 LYS C 198 REMARK 465 GLY C 199 REMARK 465 ALA C 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 170 O HOH C 2084 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2048 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B2025 DISTANCE = 6.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 73B A 1191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 73B B 1185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 73B C 1183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1184 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UYD RELATED DB: PDB REMARK 900 N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 1,3- DIMETHYL-2-OXO-2,3- REMARK 900 DIHYDRO-1H-1,3-BENZODIAZOLE-5- CARBOXAMIDE REMARK 900 RELATED ID: 4UYE RELATED DB: PDB REMARK 900 BROMODOMAIN OF HUMAN BRPF1 WITH N-1,3-DIMETHYL-2- OXO-6-(PIPERIDIN- REMARK 900 1-YL)-2,3-DIHYDRO-1H-1,3- BENZODIAZOL-5-YL-2-METHOXYBENZAMIDE REMARK 900 RELATED ID: 4UYG RELATED DB: PDB REMARK 900 THE DISCOVERY OF I-BET726 (GSK1324726A), A POTENT REMARK 900 TETRAHYDROQUINOLINE APOA1 UP-REGULATOR AND SELECTIVE BET REMARK 900 BROMODOMAIN INHIBITOR REMARK 900 RELATED ID: 4UYH RELATED DB: PDB REMARK 900 N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 1-((2R,4S )-2-METHYL-4- REMARK 900 (PHENYLAMINO)-6-(4-(PIPERIDIN-1-YLMETHYL )PHENYL)-3,4- REMARK 900 DIHYDROQUINOLIN-1(2H)-YL)ETHANONE REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL CONTINAS HIS6 AFFINITY TAG DBREF 4UYF A 67 200 UNP P25440 BRD2_HUMAN 67 200 DBREF 4UYF B 67 200 UNP P25440 BRD2_HUMAN 67 200 DBREF 4UYF C 67 200 UNP P25440 BRD2_HUMAN 67 200 SEQADV 4UYF GLY A 47 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER A 48 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER A 49 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS A 50 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS A 51 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS A 52 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS A 53 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS A 54 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS A 55 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER A 56 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER A 57 UNP P25440 EXPRESSION TAG SEQADV 4UYF GLY A 58 UNP P25440 EXPRESSION TAG SEQADV 4UYF LEU A 59 UNP P25440 EXPRESSION TAG SEQADV 4UYF VAL A 60 UNP P25440 EXPRESSION TAG SEQADV 4UYF PRO A 61 UNP P25440 EXPRESSION TAG SEQADV 4UYF ARG A 62 UNP P25440 EXPRESSION TAG SEQADV 4UYF GLY A 63 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER A 64 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS A 65 UNP P25440 EXPRESSION TAG SEQADV 4UYF MET A 66 UNP P25440 EXPRESSION TAG SEQADV 4UYF ASN A 71 UNP P25440 LYS 71 CONFLICT SEQADV 4UYF GLY B 47 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER B 48 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER B 49 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS B 50 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS B 51 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS B 52 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS B 53 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS B 54 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS B 55 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER B 56 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER B 57 UNP P25440 EXPRESSION TAG SEQADV 4UYF GLY B 58 UNP P25440 EXPRESSION TAG SEQADV 4UYF LEU B 59 UNP P25440 EXPRESSION TAG SEQADV 4UYF VAL B 60 UNP P25440 EXPRESSION TAG SEQADV 4UYF PRO B 61 UNP P25440 EXPRESSION TAG SEQADV 4UYF ARG B 62 UNP P25440 EXPRESSION TAG SEQADV 4UYF GLY B 63 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER B 64 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS B 65 UNP P25440 EXPRESSION TAG SEQADV 4UYF MET B 66 UNP P25440 EXPRESSION TAG SEQADV 4UYF GLY C 47 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER C 48 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER C 49 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS C 50 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS C 51 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS C 52 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS C 53 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS C 54 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS C 55 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER C 56 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER C 57 UNP P25440 EXPRESSION TAG SEQADV 4UYF GLY C 58 UNP P25440 EXPRESSION TAG SEQADV 4UYF LEU C 59 UNP P25440 EXPRESSION TAG SEQADV 4UYF VAL C 60 UNP P25440 EXPRESSION TAG SEQADV 4UYF PRO C 61 UNP P25440 EXPRESSION TAG SEQADV 4UYF ARG C 62 UNP P25440 EXPRESSION TAG SEQADV 4UYF GLY C 63 UNP P25440 EXPRESSION TAG SEQADV 4UYF SER C 64 UNP P25440 EXPRESSION TAG SEQADV 4UYF HIS C 65 UNP P25440 EXPRESSION TAG SEQADV 4UYF MET C 66 UNP P25440 EXPRESSION TAG SEQRES 1 A 154 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 154 VAL PRO ARG GLY SER HIS MET SER ASN PRO LYS ASN PRO SEQRES 3 A 154 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 4 A 154 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 5 A 154 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 6 A 154 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 7 A 154 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 8 A 154 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 9 A 154 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 10 A 154 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 11 A 154 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 12 A 154 THR ILE PRO LYS ASN SER HIS LYS LYS GLY ALA SEQRES 1 B 154 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 B 154 VAL PRO ARG GLY SER HIS MET SER ASN PRO LYS LYS PRO SEQRES 3 B 154 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 4 B 154 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 5 B 154 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 6 B 154 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 7 B 154 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 8 B 154 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 9 B 154 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 10 B 154 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 11 B 154 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 12 B 154 THR ILE PRO LYS ASN SER HIS LYS LYS GLY ALA SEQRES 1 C 154 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 C 154 VAL PRO ARG GLY SER HIS MET SER ASN PRO LYS LYS PRO SEQRES 3 C 154 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 4 C 154 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 5 C 154 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 6 C 154 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 7 C 154 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 8 C 154 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 9 C 154 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 10 C 154 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 11 C 154 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 12 C 154 THR ILE PRO LYS ASN SER HIS LYS LYS GLY ALA HET EDO A1190 4 HET 73B A1191 31 HET SO4 A1192 5 HET EDO B1184 4 HET 73B B1185 31 HET SO4 B1186 5 HET EDO C1182 4 HET 73B C1183 31 HET SO4 C1184 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM 73B 4-[(2S,4R)-1-ACETYL-4-[(4-CHLOROPHENYL)AMINO]-2-METHYL- HETNAM 2 73B 1,2,3,4-TETRAHYDROQUINOLIN-6-YL]BENZOIC ACID HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 3(C2 H6 O2) FORMUL 5 73B 3(C25 H23 CL N2 O3) FORMUL 6 SO4 3(O4 S 2-) FORMUL 13 HOH *388(H2 O) HELIX 1 1 THR A 76 VAL A 85 1 10 HELIX 2 2 VAL A 85 LYS A 92 1 8 HELIX 3 3 ALA A 96 ARG A 100 5 5 HELIX 4 4 ASP A 104 GLY A 109 1 6 HELIX 5 5 ASP A 112 ILE A 117 1 6 HELIX 6 6 ASP A 122 ASN A 132 1 11 HELIX 7 7 ALA A 137 ASN A 156 1 20 HELIX 8 8 ASP A 160 ALA A 178 1 19 HELIX 9 9 THR B 76 VAL B 85 1 10 HELIX 10 10 VAL B 85 LYS B 92 1 8 HELIX 11 11 ALA B 96 ARG B 100 5 5 HELIX 12 12 ASP B 104 GLY B 109 1 6 HELIX 13 13 ASP B 112 ILE B 117 1 6 HELIX 14 14 ASP B 122 ASN B 132 1 11 HELIX 15 15 ALA B 137 ASN B 156 1 20 HELIX 16 16 ASP B 160 SER B 179 1 20 HELIX 17 17 VAL C 75 VAL C 85 1 11 HELIX 18 18 VAL C 85 LYS C 92 1 8 HELIX 19 19 ALA C 96 ARG C 100 5 5 HELIX 20 20 ASP C 112 ILE C 117 1 6 HELIX 21 21 ASP C 122 ASN C 132 1 11 HELIX 22 22 ALA C 137 ASN C 156 1 20 HELIX 23 23 ASP C 160 ALA C 178 1 19 SITE 1 AC1 8 ASN A 146 THR A 150 TYR A 153 GLU A 170 SITE 2 AC1 8 ASN B 146 THR B 150 TYR B 153 GLU B 170 SITE 1 AC2 7 TYR A 153 GLN A 167 GLU A 170 HOH A2149 SITE 2 AC2 7 HOH A2169 ASN B 146 THR B 150 SITE 1 AC3 2 MET C 165 HOH C2012 SITE 1 AC4 11 TRP A 97 PRO A 98 PHE A 99 LYS A 107 SITE 2 AC4 11 LEU A 108 ASN A 156 HOH A2080 HOH A2170 SITE 3 AC4 11 HOH A2171 HOH A2172 GLN B 94 SITE 1 AC5 9 GLN A 94 TRP B 97 PRO B 98 PHE B 99 SITE 2 AC5 9 LEU B 110 ASN B 156 HOH B2044 HOH B2110 SITE 3 AC5 9 HOH B2111 SITE 1 AC6 13 ASN A 77 GLN A 80 HIS A 83 LYS A 84 SITE 2 AC6 13 PRO A 181 HOH A2012 HOH A2018 HOH A2020 SITE 3 AC6 13 TRP C 97 PRO C 98 LEU C 110 ASN C 156 SITE 4 AC6 13 HOH C2039 SITE 1 AC7 9 ARG B 100 HOH B2009 HOH B2012 HOH B2014 SITE 2 AC7 9 HOH B2113 ARG C 128 ASN C 132 TYR C 134 SITE 3 AC7 9 HOH C2062 SITE 1 AC8 5 LYS A 84 LYS A 88 HOH A2019 ARG C 100 SITE 2 AC8 5 GLN C 101 SITE 1 AC9 5 HIS C 83 MET C 87 LYS C 88 TRP C 91 SITE 2 AC9 5 LYS C 127 CRYST1 118.064 55.597 67.266 90.00 93.99 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008470 0.000000 0.000591 0.00000 SCALE2 0.000000 0.017987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014902 0.00000