data_4W7Y # _entry.id 4W7Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4W7Y WWPDB D_1000203351 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4W7Y _pdbx_database_status.recvd_initial_deposition_date 2014-08-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Quistgaard, E.M.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1364-548X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 14995 _citation.page_last 14997 _citation.title 'A disulfide polymerized protein crystal.' _citation.year 2014 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c4cc07326f _citation.pdbx_database_id_PubMed 25327138 _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Quistgaard, E.M.' _citation_author.ordinal 1 # _cell.entry_id 4W7Y _cell.length_a 118.870 _cell.length_b 118.870 _cell.length_c 30.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W7Y _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B-cell receptor-associated protein 29' 7731.090 2 ? ? 'UNP residues 168-229' ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 31 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Bap29 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'S(MSE)DEECVLEAENKKLVEDQEKLKTELRKTSDALSKAQNDV(MSE)E(MSE)K(MSE)QSERLSKEYDQLLKEHSEL' _entity_poly.pdbx_seq_one_letter_code_can SMDEECVLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSEL _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MSE n 1 3 ASP n 1 4 GLU n 1 5 GLU n 1 6 CYS n 1 7 VAL n 1 8 LEU n 1 9 GLU n 1 10 ALA n 1 11 GLU n 1 12 ASN n 1 13 LYS n 1 14 LYS n 1 15 LEU n 1 16 VAL n 1 17 GLU n 1 18 ASP n 1 19 GLN n 1 20 GLU n 1 21 LYS n 1 22 LEU n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 LEU n 1 27 ARG n 1 28 LYS n 1 29 THR n 1 30 SER n 1 31 ASP n 1 32 ALA n 1 33 LEU n 1 34 SER n 1 35 LYS n 1 36 ALA n 1 37 GLN n 1 38 ASN n 1 39 ASP n 1 40 VAL n 1 41 MSE n 1 42 GLU n 1 43 MSE n 1 44 LYS n 1 45 MSE n 1 46 GLN n 1 47 SER n 1 48 GLU n 1 49 ARG n 1 50 LEU n 1 51 SER n 1 52 LYS n 1 53 GLU n 1 54 TYR n 1 55 ASP n 1 56 GLN n 1 57 LEU n 1 58 LEU n 1 59 LYS n 1 60 GLU n 1 61 HIS n 1 62 SER n 1 63 GLU n 1 64 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 64 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BCAP29, BAP29' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BAP29_HUMAN _struct_ref.pdbx_db_accession Q9UHQ4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DEECVLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSEL _struct_ref.pdbx_align_begin 168 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4W7Y A 3 ? 64 ? Q9UHQ4 168 ? 229 ? 168 229 2 1 4W7Y B 3 ? 64 ? Q9UHQ4 168 ? 229 ? 168 229 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4W7Y SER A 1 ? UNP Q9UHQ4 ? ? 'expression tag' 166 1 1 4W7Y MSE A 2 ? UNP Q9UHQ4 ? ? 'expression tag' 167 2 2 4W7Y SER B 1 ? UNP Q9UHQ4 ? ? 'expression tag' 166 3 2 4W7Y MSE B 2 ? UNP Q9UHQ4 ? ? 'expression tag' 167 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4W7Y _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 69.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Grown in 34% 2-methyl-2,4-pentanediol (MPD), 100 mM Na acetate pH 4.6 and 20 mM CaCl2 using SeMet labeled protein purified in 20 mM Tris pH 8, 150 mM NaCl and 2 mM tris(2-carboxyethyl)phosphine (TECEP) and concentrated to ~13 mg/mL. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-10-02 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97800 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4W7Y _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 34.31 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16720 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.09 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.64 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.93 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4W7Y _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16718 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.47 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.315 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 99.93 _refine.ls_R_factor_obs 0.1973 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1953 _refine.ls_R_factor_R_free 0.2352 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.71 _refine.ls_number_reflns_R_free 787 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.pdbx_overall_phase_error 25.95 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1044 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 1095 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 34.315 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.012 ? ? 1065 'X-RAY DIFFRACTION' ? f_angle_d 1.275 ? ? 1411 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.189 ? ? 440 'X-RAY DIFFRACTION' ? f_chiral_restr 0.053 ? ? 158 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 183 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.5002 2.6567 2651 0.2550 100.00 0.2701 . . 109 . . . . 'X-RAY DIFFRACTION' . 2.6567 2.8618 2659 0.2311 100.00 0.2964 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.8618 3.1496 2648 0.2200 100.00 0.2605 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.1496 3.6049 2667 0.2057 100.00 0.2707 . . 121 . . . . 'X-RAY DIFFRACTION' . 3.6049 4.5402 2667 0.1702 100.00 0.2229 . . 132 . . . . 'X-RAY DIFFRACTION' . 4.5402 34.3180 2639 0.1831 100.00 0.2049 . . 143 . . . . # _struct.entry_id 4W7Y _struct.title 'Dimeric BAP29 vDED with disulfide bonds in crystal contacts' _struct.pdbx_descriptor BAP29 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4W7Y _struct_keywords.text 'Coiled coil, nanomaterial, transport protein' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 1 ? HIS A 61 ? SER A 166 HIS A 226 1 ? 61 HELX_P HELX_P2 AA2 MSE B 2 ? SER B 62 ? MSE B 167 SER B 227 1 ? 61 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 B CYS 6 SG ? ? A CYS 171 B CYS 171 3_665 ? ? ? ? ? ? ? 2.072 ? covale1 covale both ? A SER 1 C ? ? ? 1_555 A MSE 2 N ? ? A SER 166 A MSE 167 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ASP 3 N ? ? A MSE 167 A ASP 168 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale both ? A VAL 40 C ? ? ? 1_555 A MSE 41 N ? ? A VAL 205 A MSE 206 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale both ? A MSE 41 C ? ? ? 1_555 A GLU 42 N ? ? A MSE 206 A GLU 207 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale both ? A GLU 42 C ? ? ? 1_555 A MSE 43 N ? ? A GLU 207 A MSE 208 1_555 ? ? ? ? ? ? ? 1.323 ? covale6 covale both ? A MSE 43 C ? ? ? 1_555 A LYS 44 N ? ? A MSE 208 A LYS 209 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale both ? A LYS 44 C ? ? ? 1_555 A MSE 45 N ? ? A LYS 209 A MSE 210 1_555 ? ? ? ? ? ? ? 1.334 ? covale8 covale both ? A MSE 45 C ? ? ? 1_555 A GLN 46 N ? ? A MSE 210 A GLN 211 1_555 ? ? ? ? ? ? ? 1.325 ? covale9 covale both ? B SER 1 C ? ? ? 1_555 B MSE 2 N ? ? B SER 166 B MSE 167 1_555 ? ? ? ? ? ? ? 1.326 ? covale10 covale both ? B MSE 2 C ? ? ? 1_555 B ASP 3 N ? ? B MSE 167 B ASP 168 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale both ? B VAL 40 C ? ? ? 1_555 B MSE 41 N ? ? B VAL 205 B MSE 206 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale both ? B MSE 41 C ? ? ? 1_555 B GLU 42 N ? ? B MSE 206 B GLU 207 1_555 ? ? ? ? ? ? ? 1.330 ? covale13 covale both ? B GLU 42 C ? ? ? 1_555 B MSE 43 N ? ? B GLU 207 B MSE 208 1_555 ? ? ? ? ? ? ? 1.327 ? covale14 covale both ? B MSE 43 C ? ? ? 1_555 B LYS 44 N ? ? B MSE 208 B LYS 209 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale both ? B LYS 44 C ? ? ? 1_555 B MSE 45 N ? ? B LYS 209 B MSE 210 1_555 ? ? ? ? ? ? ? 1.332 ? covale16 covale both ? B MSE 45 C ? ? ? 1_555 B GLN 46 N ? ? B MSE 210 B GLN 211 1_555 ? ? ? ? ? ? ? 1.334 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MPD 301 ? 6 'binding site for residue MPD A 301' AC2 Software B MPD 301 ? 3 'binding site for residue MPD B 301' AC3 Software B ACT 302 ? 4 'binding site for residue ACT B 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 25 ? GLU A 190 . ? 1_555 ? 2 AC1 6 THR A 29 ? THR A 194 . ? 1_555 ? 3 AC1 6 GLU B 60 ? GLU B 225 . ? 2_544 ? 4 AC1 6 HIS B 61 ? HIS B 226 . ? 2_544 ? 5 AC1 6 GLU B 63 ? GLU B 228 . ? 2_544 ? 6 AC1 6 HOH G . ? HOH B 402 . ? 4_655 ? 7 AC2 3 LYS A 23 ? LYS A 188 . ? 1_555 ? 8 AC2 3 ASP B 18 ? ASP B 183 . ? 1_555 ? 9 AC2 3 LYS B 21 ? LYS B 186 . ? 1_555 ? 10 AC3 4 CYS A 6 ? CYS A 171 . ? 2_654 ? 11 AC3 4 GLU A 9 ? GLU A 174 . ? 2_654 ? 12 AC3 4 LYS A 13 ? LYS A 178 . ? 2_654 ? 13 AC3 4 ASP B 3 ? ASP B 168 . ? 1_555 ? # _atom_sites.entry_id 4W7Y _atom_sites.fract_transf_matrix[1][1] 0.008413 _atom_sites.fract_transf_matrix[1][2] 0.004857 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009714 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032648 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 166 166 SER SER A . n A 1 2 MSE 2 167 167 MSE MSE A . n A 1 3 ASP 3 168 168 ASP ASP A . n A 1 4 GLU 4 169 169 GLU GLU A . n A 1 5 GLU 5 170 170 GLU GLU A . n A 1 6 CYS 6 171 171 CYS CYS A . n A 1 7 VAL 7 172 172 VAL VAL A . n A 1 8 LEU 8 173 173 LEU LEU A . n A 1 9 GLU 9 174 174 GLU GLU A . n A 1 10 ALA 10 175 175 ALA ALA A . n A 1 11 GLU 11 176 176 GLU GLU A . n A 1 12 ASN 12 177 177 ASN ASN A . n A 1 13 LYS 13 178 178 LYS LYS A . n A 1 14 LYS 14 179 179 LYS LYS A . n A 1 15 LEU 15 180 180 LEU LEU A . n A 1 16 VAL 16 181 181 VAL VAL A . n A 1 17 GLU 17 182 182 GLU GLU A . n A 1 18 ASP 18 183 183 ASP ASP A . n A 1 19 GLN 19 184 184 GLN GLN A . n A 1 20 GLU 20 185 185 GLU GLU A . n A 1 21 LYS 21 186 186 LYS LYS A . n A 1 22 LEU 22 187 187 LEU LEU A . n A 1 23 LYS 23 188 188 LYS LYS A . n A 1 24 THR 24 189 189 THR THR A . n A 1 25 GLU 25 190 190 GLU GLU A . n A 1 26 LEU 26 191 191 LEU LEU A . n A 1 27 ARG 27 192 192 ARG ARG A . n A 1 28 LYS 28 193 193 LYS LYS A . n A 1 29 THR 29 194 194 THR THR A . n A 1 30 SER 30 195 195 SER SER A . n A 1 31 ASP 31 196 196 ASP ASP A . n A 1 32 ALA 32 197 197 ALA ALA A . n A 1 33 LEU 33 198 198 LEU LEU A . n A 1 34 SER 34 199 199 SER SER A . n A 1 35 LYS 35 200 200 LYS LYS A . n A 1 36 ALA 36 201 201 ALA ALA A . n A 1 37 GLN 37 202 202 GLN GLN A . n A 1 38 ASN 38 203 203 ASN ASN A . n A 1 39 ASP 39 204 204 ASP ASP A . n A 1 40 VAL 40 205 205 VAL VAL A . n A 1 41 MSE 41 206 206 MSE MSE A . n A 1 42 GLU 42 207 207 GLU GLU A . n A 1 43 MSE 43 208 208 MSE MSE A . n A 1 44 LYS 44 209 209 LYS LYS A . n A 1 45 MSE 45 210 210 MSE MSE A . n A 1 46 GLN 46 211 211 GLN GLN A . n A 1 47 SER 47 212 212 SER SER A . n A 1 48 GLU 48 213 213 GLU GLU A . n A 1 49 ARG 49 214 214 ARG ARG A . n A 1 50 LEU 50 215 215 LEU LEU A . n A 1 51 SER 51 216 216 SER SER A . n A 1 52 LYS 52 217 217 LYS LYS A . n A 1 53 GLU 53 218 218 GLU GLU A . n A 1 54 TYR 54 219 219 TYR TYR A . n A 1 55 ASP 55 220 220 ASP ASP A . n A 1 56 GLN 56 221 221 GLN GLN A . n A 1 57 LEU 57 222 222 LEU LEU A . n A 1 58 LEU 58 223 223 LEU LEU A . n A 1 59 LYS 59 224 224 LYS LYS A . n A 1 60 GLU 60 225 225 GLU GLU A . n A 1 61 HIS 61 226 226 HIS HIS A . n A 1 62 SER 62 227 227 SER SER A . n A 1 63 GLU 63 228 228 GLU GLU A . n A 1 64 LEU 64 229 229 LEU LEU A . n B 1 1 SER 1 166 166 SER SER B . n B 1 2 MSE 2 167 167 MSE MSE B . n B 1 3 ASP 3 168 168 ASP ASP B . n B 1 4 GLU 4 169 169 GLU GLU B . n B 1 5 GLU 5 170 170 GLU GLU B . n B 1 6 CYS 6 171 171 CYS CYS B . n B 1 7 VAL 7 172 172 VAL VAL B . n B 1 8 LEU 8 173 173 LEU LEU B . n B 1 9 GLU 9 174 174 GLU GLU B . n B 1 10 ALA 10 175 175 ALA ALA B . n B 1 11 GLU 11 176 176 GLU GLU B . n B 1 12 ASN 12 177 177 ASN ASN B . n B 1 13 LYS 13 178 178 LYS LYS B . n B 1 14 LYS 14 179 179 LYS LYS B . n B 1 15 LEU 15 180 180 LEU LEU B . n B 1 16 VAL 16 181 181 VAL VAL B . n B 1 17 GLU 17 182 182 GLU GLU B . n B 1 18 ASP 18 183 183 ASP ASP B . n B 1 19 GLN 19 184 184 GLN GLN B . n B 1 20 GLU 20 185 185 GLU GLU B . n B 1 21 LYS 21 186 186 LYS LYS B . n B 1 22 LEU 22 187 187 LEU LEU B . n B 1 23 LYS 23 188 188 LYS LYS B . n B 1 24 THR 24 189 189 THR THR B . n B 1 25 GLU 25 190 190 GLU GLU B . n B 1 26 LEU 26 191 191 LEU LEU B . n B 1 27 ARG 27 192 192 ARG ARG B . n B 1 28 LYS 28 193 193 LYS LYS B . n B 1 29 THR 29 194 194 THR THR B . n B 1 30 SER 30 195 195 SER SER B . n B 1 31 ASP 31 196 196 ASP ASP B . n B 1 32 ALA 32 197 197 ALA ALA B . n B 1 33 LEU 33 198 198 LEU LEU B . n B 1 34 SER 34 199 199 SER SER B . n B 1 35 LYS 35 200 200 LYS LYS B . n B 1 36 ALA 36 201 201 ALA ALA B . n B 1 37 GLN 37 202 202 GLN GLN B . n B 1 38 ASN 38 203 203 ASN ASN B . n B 1 39 ASP 39 204 204 ASP ASP B . n B 1 40 VAL 40 205 205 VAL VAL B . n B 1 41 MSE 41 206 206 MSE MSE B . n B 1 42 GLU 42 207 207 GLU GLU B . n B 1 43 MSE 43 208 208 MSE MSE B . n B 1 44 LYS 44 209 209 LYS LYS B . n B 1 45 MSE 45 210 210 MSE MSE B . n B 1 46 GLN 46 211 211 GLN GLN B . n B 1 47 SER 47 212 212 SER SER B . n B 1 48 GLU 48 213 213 GLU GLU B . n B 1 49 ARG 49 214 214 ARG ARG B . n B 1 50 LEU 50 215 215 LEU LEU B . n B 1 51 SER 51 216 216 SER SER B . n B 1 52 LYS 52 217 217 LYS LYS B . n B 1 53 GLU 53 218 218 GLU GLU B . n B 1 54 TYR 54 219 219 TYR TYR B . n B 1 55 ASP 55 220 220 ASP ASP B . n B 1 56 GLN 56 221 221 GLN GLN B . n B 1 57 LEU 57 222 222 LEU LEU B . n B 1 58 LEU 58 223 223 LEU LEU B . n B 1 59 LYS 59 224 224 LYS LYS B . n B 1 60 GLU 60 225 225 GLU GLU B . n B 1 61 HIS 61 226 226 HIS HIS B . n B 1 62 SER 62 227 227 SER SER B . n B 1 63 GLU 63 228 228 GLU GLU B . n B 1 64 LEU 64 229 229 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD 1 301 2 MPD MPD A . D 2 MPD 1 301 1 MPD MPD B . E 3 ACT 1 302 3 ACT ACT B . F 4 HOH 1 401 37 HOH HOH A . F 4 HOH 2 402 21 HOH HOH A . F 4 HOH 3 403 19 HOH HOH A . F 4 HOH 4 404 31 HOH HOH A . F 4 HOH 5 405 26 HOH HOH A . F 4 HOH 6 406 13 HOH HOH A . F 4 HOH 7 407 34 HOH HOH A . F 4 HOH 8 408 9 HOH HOH A . F 4 HOH 9 409 38 HOH HOH A . F 4 HOH 10 410 18 HOH HOH A . F 4 HOH 11 411 7 HOH HOH A . F 4 HOH 12 412 1 HOH HOH A . F 4 HOH 13 413 4 HOH HOH A . F 4 HOH 14 414 6 HOH HOH A . F 4 HOH 15 415 15 HOH HOH A . F 4 HOH 16 416 22 HOH HOH A . F 4 HOH 17 417 24 HOH HOH A . F 4 HOH 18 418 25 HOH HOH A . F 4 HOH 19 419 33 HOH HOH A . G 4 HOH 1 401 30 HOH HOH B . G 4 HOH 2 402 28 HOH HOH B . G 4 HOH 3 403 3 HOH HOH B . G 4 HOH 4 404 10 HOH HOH B . G 4 HOH 5 405 20 HOH HOH B . G 4 HOH 6 406 14 HOH HOH B . G 4 HOH 7 407 35 HOH HOH B . G 4 HOH 8 408 32 HOH HOH B . G 4 HOH 9 409 29 HOH HOH B . G 4 HOH 10 410 2 HOH HOH B . G 4 HOH 11 411 11 HOH HOH B . G 4 HOH 12 412 36 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 41 A MSE 206 ? MET 'modified residue' 2 A MSE 43 A MSE 208 ? MET 'modified residue' 3 A MSE 45 A MSE 210 ? MET 'modified residue' 4 B MSE 41 B MSE 206 ? MET 'modified residue' 5 B MSE 43 B MSE 208 ? MET 'modified residue' 6 B MSE 45 B MSE 210 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3650 ? 1 MORE -50 ? 1 'SSA (A^2)' 10130 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-29 2 'Structure model' 1 1 2014-11-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 71.3112 _pdbx_refine_tls.origin_y -8.0539 _pdbx_refine_tls.origin_z 3.9062 _pdbx_refine_tls.T[1][1] 0.7042 _pdbx_refine_tls.T[2][2] 0.3975 _pdbx_refine_tls.T[3][3] 0.5048 _pdbx_refine_tls.T[1][2] 0.1281 _pdbx_refine_tls.T[1][3] -0.0007 _pdbx_refine_tls.T[2][3] 0.0776 _pdbx_refine_tls.L[1][1] 1.2608 _pdbx_refine_tls.L[2][2] 5.6933 _pdbx_refine_tls.L[3][3] 0.4455 _pdbx_refine_tls.L[1][2] -1.9849 _pdbx_refine_tls.L[1][3] 0.4097 _pdbx_refine_tls.L[2][3] -0.9965 _pdbx_refine_tls.S[1][1] 0.0137 _pdbx_refine_tls.S[1][2] -0.1544 _pdbx_refine_tls.S[1][3] -0.3698 _pdbx_refine_tls.S[2][1] -0.4709 _pdbx_refine_tls.S[2][2] 0.0961 _pdbx_refine_tls.S[2][3] -0.1191 _pdbx_refine_tls.S[3][1] 0.4826 _pdbx_refine_tls.S[3][2] 0.1735 _pdbx_refine_tls.S[3][3] -0.1445 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ;chain 'A' or chain 'B' ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.9_1692)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 227 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 228 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 143.68 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 'ACETATE ION' ACT 4 water HOH #