HEADER RNA BINDING PROTEIN/RNA 26-AUG-14 4W90 TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS CYCLIC-DI-AMP RIBOSWITCH YDAO COMPND MOL_ID: 1; COMPND 2 MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: U1A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBOSWITCH A PSEUDO-DIMERIC RNA; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: U1A PROTEIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIDTBLUE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 11 ORGANISM_TAXID: 1423; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RIBOSWITCH, CYCLIC-DI-AMP, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN- KEYWDS 2 RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.P.JONES,A.R.FERRE-D'AMARE REVDAT 5 27-DEC-23 4W90 1 COMPND REMARK HETNAM LINK REVDAT 4 22-NOV-17 4W90 1 SOURCE JRNL REMARK REVDAT 3 25-FEB-15 4W90 1 REMARK REVDAT 2 03-DEC-14 4W90 1 JRNL REVDAT 1 15-OCT-14 4W90 0 JRNL AUTH C.P.JONES,A.R.FERRE-D'AMARE JRNL TITL CRYSTAL STRUCTURE OF A C-DI-AMP RIBOSWITCH REVEALS AN JRNL TITL 2 INTERNALLY PSEUDO-DIMERIC RNA. JRNL REF EMBO J. V. 33 2692 2014 JRNL REFN ESSN 1460-2075 JRNL PMID 25271255 JRNL DOI 10.15252/EMBJ.201489209 REMARK 2 REMARK 2 RESOLUTION. 3.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 9322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9423 - 7.1318 0.82 1251 133 0.2209 0.2920 REMARK 3 2 7.1318 - 5.6638 0.84 1269 140 0.2185 0.2646 REMARK 3 3 5.6638 - 4.9488 0.85 1260 150 0.1816 0.2243 REMARK 3 4 4.9488 - 4.4967 0.87 1307 129 0.1842 0.2537 REMARK 3 5 4.4967 - 4.1746 0.86 1308 147 0.2047 0.2930 REMARK 3 6 4.1746 - 3.9286 0.86 1296 148 0.2174 0.2624 REMARK 3 7 3.9286 - 3.7320 0.88 1332 142 0.2495 0.3125 REMARK 3 8 3.7320 - 3.5696 0.89 1338 149 0.2581 0.3320 REMARK 3 9 3.5696 - 3.4322 0.88 1319 146 0.2798 0.3393 REMARK 3 10 3.4322 - 3.3138 0.89 1331 141 0.3305 0.3456 REMARK 3 11 3.3138 - 3.2102 0.89 1347 147 0.3310 0.3860 REMARK 3 12 3.2102 - 3.1185 0.83 1228 141 0.3505 0.3712 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3150 REMARK 3 ANGLE : 0.791 4779 REMARK 3 CHIRALITY : 0.034 624 REMARK 3 PLANARITY : 0.004 219 REMARK 3 DIHEDRAL : 15.906 1457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2860 203.3053 277.2100 REMARK 3 T TENSOR REMARK 3 T11: 1.0020 T22: 1.4926 REMARK 3 T33: 0.5581 T12: -0.2460 REMARK 3 T13: 0.2830 T23: -0.0862 REMARK 3 L TENSOR REMARK 3 L11: 0.0887 L22: 0.0447 REMARK 3 L33: 0.3308 L12: 0.0987 REMARK 3 L13: 0.1675 L23: 0.1201 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: 0.7023 S13: -0.0550 REMARK 3 S21: 0.6887 S22: -0.2123 S23: 0.5372 REMARK 3 S31: 0.0262 S32: -0.5108 S33: -0.0888 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6366 200.6172 275.5787 REMARK 3 T TENSOR REMARK 3 T11: 0.6472 T22: 0.6685 REMARK 3 T33: 0.4251 T12: -0.0320 REMARK 3 T13: -0.0362 T23: 0.1455 REMARK 3 L TENSOR REMARK 3 L11: 1.1930 L22: 0.3124 REMARK 3 L33: 0.0202 L12: -0.6108 REMARK 3 L13: -0.1162 L23: 0.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.2474 S12: 0.3026 S13: -0.6423 REMARK 3 S21: 0.1759 S22: -0.0680 S23: 0.4855 REMARK 3 S31: -0.2220 S32: 0.1431 S33: -0.0122 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0836 199.2448 270.9587 REMARK 3 T TENSOR REMARK 3 T11: 0.8224 T22: 0.9688 REMARK 3 T33: 1.2526 T12: -0.2173 REMARK 3 T13: 0.8145 T23: 0.5255 REMARK 3 L TENSOR REMARK 3 L11: 0.2534 L22: 0.4409 REMARK 3 L33: 0.2020 L12: -0.3300 REMARK 3 L13: 0.2259 L23: -0.2992 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: -0.0984 S13: -0.0869 REMARK 3 S21: 0.1213 S22: 0.1410 S23: 0.3027 REMARK 3 S31: 0.0699 S32: -0.3301 S33: 0.6416 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5391 197.4798 282.1994 REMARK 3 T TENSOR REMARK 3 T11: 1.2313 T22: 0.9829 REMARK 3 T33: 0.7153 T12: -0.0150 REMARK 3 T13: -0.1957 T23: 0.2464 REMARK 3 L TENSOR REMARK 3 L11: 0.0537 L22: 0.0100 REMARK 3 L33: 0.0342 L12: -0.0060 REMARK 3 L13: 0.0238 L23: -0.0242 REMARK 3 S TENSOR REMARK 3 S11: 0.1013 S12: -0.1920 S13: -0.0805 REMARK 3 S21: 0.9235 S22: -0.2074 S23: -0.1072 REMARK 3 S31: 0.3468 S32: -0.1871 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6716 205.9133 286.7375 REMARK 3 T TENSOR REMARK 3 T11: 1.2321 T22: 0.9201 REMARK 3 T33: -0.8390 T12: 0.1532 REMARK 3 T13: 0.0893 T23: 0.3128 REMARK 3 L TENSOR REMARK 3 L11: 0.1034 L22: 0.2594 REMARK 3 L33: 0.3224 L12: -0.1584 REMARK 3 L13: 0.0685 L23: -0.2083 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: -0.2851 S13: 0.0155 REMARK 3 S21: 0.0829 S22: 0.0020 S23: -0.0564 REMARK 3 S31: 0.1633 S32: -0.0859 S33: 0.9331 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4196 212.0699 274.5345 REMARK 3 T TENSOR REMARK 3 T11: 0.6255 T22: 1.1469 REMARK 3 T33: 0.7551 T12: -0.0960 REMARK 3 T13: 0.0585 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.0387 L22: 0.0351 REMARK 3 L33: 0.0400 L12: -0.0384 REMARK 3 L13: 0.0199 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.2754 S12: -0.1321 S13: -0.2762 REMARK 3 S21: -0.3448 S22: -0.0877 S23: 0.5612 REMARK 3 S31: 0.4401 S32: 0.1529 S33: -0.0009 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6767 195.5901 285.9792 REMARK 3 T TENSOR REMARK 3 T11: 1.7617 T22: 1.0699 REMARK 3 T33: 0.9110 T12: -0.4297 REMARK 3 T13: 0.8485 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.5511 L22: 0.9082 REMARK 3 L33: 1.3870 L12: 0.2395 REMARK 3 L13: 1.4544 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.6104 S12: -0.4039 S13: -0.9084 REMARK 3 S21: 0.3623 S22: -0.7577 S23: -0.0683 REMARK 3 S31: 0.2269 S32: 0.4126 S33: -1.4251 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4847 187.9554 242.5155 REMARK 3 T TENSOR REMARK 3 T11: 1.0366 T22: 0.8284 REMARK 3 T33: 1.0749 T12: -0.1071 REMARK 3 T13: 0.2837 T23: -0.2331 REMARK 3 L TENSOR REMARK 3 L11: 0.5098 L22: 0.3427 REMARK 3 L33: 0.7493 L12: 0.7060 REMARK 3 L13: 1.0858 L23: 0.1976 REMARK 3 S TENSOR REMARK 3 S11: -0.1974 S12: 0.8675 S13: -0.0593 REMARK 3 S21: -0.4508 S22: 0.5682 S23: -0.5774 REMARK 3 S31: 0.1502 S32: 0.3540 S33: 0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 34 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2905 194.7221 269.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.9511 T22: 1.0371 REMARK 3 T33: 1.1208 T12: -0.0720 REMARK 3 T13: 0.2565 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 0.6924 L22: 0.0973 REMARK 3 L33: 0.1901 L12: 0.0014 REMARK 3 L13: 0.1907 L23: 0.1227 REMARK 3 S TENSOR REMARK 3 S11: 0.1836 S12: -0.7880 S13: 0.7383 REMARK 3 S21: 0.0993 S22: -1.0441 S23: 0.7977 REMARK 3 S31: 0.3073 S32: -0.2211 S33: -0.0445 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 66 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7722 190.4686 270.7883 REMARK 3 T TENSOR REMARK 3 T11: 0.4878 T22: 1.0644 REMARK 3 T33: 1.0236 T12: 0.0566 REMARK 3 T13: -0.1064 T23: 0.3716 REMARK 3 L TENSOR REMARK 3 L11: 0.4405 L22: 2.3386 REMARK 3 L33: 2.4295 L12: 0.5196 REMARK 3 L13: 0.4246 L23: 1.3792 REMARK 3 S TENSOR REMARK 3 S11: 0.4179 S12: -0.0760 S13: -2.3082 REMARK 3 S21: -0.3251 S22: 0.5573 S23: -0.2932 REMARK 3 S31: 0.2233 S32: -0.3133 S33: 0.7710 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 83 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.2330 188.3100 254.2268 REMARK 3 T TENSOR REMARK 3 T11: 0.8332 T22: 0.7361 REMARK 3 T33: 1.1404 T12: -0.0669 REMARK 3 T13: 0.1687 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.6199 L22: 1.5051 REMARK 3 L33: 1.4634 L12: -0.4436 REMARK 3 L13: 0.8983 L23: 0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.2286 S12: 0.0513 S13: -0.8227 REMARK 3 S21: -0.3202 S22: 0.2436 S23: -0.5560 REMARK 3 S31: 0.2129 S32: 0.1295 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9322 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.118 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.94400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, PH 5.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.64000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.26800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.64000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 115.26800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.64000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.42500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.26800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.64000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.42500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 115.26800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 6 REMARK 465 U C 41 REMARK 465 C C 42 REMARK 465 C C 43 REMARK 465 G C 44 REMARK 465 G C 45 REMARK 465 G C 46 REMARK 465 U C 47 REMARK 465 U C 48 REMARK 465 U C 49 REMARK 465 U C 50 REMARK 465 U C 51 REMARK 465 C C 52 REMARK 465 C C 53 REMARK 465 C C 54 REMARK 465 G C 55 REMARK 465 U C 56 REMARK 465 U C 71 REMARK 465 U C 72 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 10 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 20 CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 LEU B 41 CG CD1 CD2 REMARK 470 VAL B 45 CG1 CG2 REMARK 470 LEU B 49 CG CD1 CD2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 ARG B 52 NE CZ NH1 NH2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 ARG B 83 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 ILE B 93 CG1 CG2 CD1 REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 A C 15 C8 N7 C5 C6 N6 N1 C2 REMARK 470 A C 15 N3 C4 REMARK 470 A C 57 OP1 OP2 REMARK 470 U C 73 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 11 OG SER B 91 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U C 7 OP1 REMARK 620 2 C C 82 OP1 77.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 27 OP1 REMARK 620 2 U C 62 OP1 77.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 29 OP2 REMARK 620 2 G C 101 OP1 80.5 REMARK 620 3 C C 102 OP2 158.6 80.8 REMARK 620 4 U C 103 O4 90.9 79.3 75.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2BA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2BA C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 207 DBREF 4W90 B 6 96 UNP P09012 SNRPA_HUMAN 6 96 DBREF 4W90 C 1 119 PDB 4W90 4W90 1 119 SEQADV 4W90 HIS B 31 UNP P09012 TYR 31 ENGINEERED MUTATION SEQADV 4W90 ARG B 36 UNP P09012 GLN 36 ENGINEERED MUTATION SEQRES 1 B 91 THR ARG PRO ASN HIS THR ILE TYR ILE ASN ASN LEU ASN SEQRES 2 B 91 GLU LYS ILE LYS LYS ASP GLU LEU LYS LYS SER LEU HIS SEQRES 3 B 91 ALA ILE PHE SER ARG PHE GLY GLN ILE LEU ASP ILE LEU SEQRES 4 B 91 VAL SER ARG SER LEU LYS MSE ARG GLY GLN ALA PHE VAL SEQRES 5 B 91 ILE PHE LYS GLU VAL SER SER ALA THR ASN ALA LEU ARG SEQRES 6 B 91 SER MSE GLN GLY PHE PRO PHE TYR ASP LYS PRO MSE ARG SEQRES 7 B 91 ILE GLN TYR ALA LYS THR ASP SER ASP ILE ILE ALA LYS SEQRES 1 C 119 G C G C G C U U A A U C U SEQRES 2 C 119 G A A A U C A G A G C G G SEQRES 3 C 119 G G G A C C C A U U G C A SEQRES 4 C 119 C U C C G G G U U U U U C SEQRES 5 C 119 C C G U A G G G G U G A A SEQRES 6 C 119 U C C U U U U U A G G U A SEQRES 7 C 119 G G G C G A A A G C C C G SEQRES 8 C 119 A A U C C G U C A G C U A SEQRES 9 C 119 A C C U C G U A A G C G C SEQRES 10 C 119 G C MODRES 4W90 MSE B 51 MET MODIFIED RESIDUE MODRES 4W90 MSE B 72 MET MODIFIED RESIDUE MODRES 4W90 MSE B 82 MET MODIFIED RESIDUE HET MSE B 51 8 HET MSE B 72 8 HET MSE B 82 8 HET 2BA C 201 44 HET 2BA C 202 44 HET MG C 203 1 HET MG C 204 1 HET MG C 205 1 HET MG C 206 1 HET MG C 207 1 HETNAM MSE SELENOMETHIONINE HETNAM 2BA (2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-2,9-BIS(6- HETNAM 2 2BA AMINO-9H-PURIN-9-YL)OCTAHYDRO-2H,7H-DIFURO[3,2-D:3', HETNAM 3 2BA 2'-J][1,3,7,9,2,8 ]TETRAOXADIPHOSPHACYCLODODECINE-3,5, HETNAM 4 2BA 10,12-TETROL 5,12-DIOXIDE HETNAM MG MAGNESIUM ION HETSYN 2BA BIS-(3',5')-CYCLIC-DIMERIC-ADENOSINE-MONOPHOSPHATE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 2BA 2(C20 H24 N10 O12 P2) FORMUL 5 MG 5(MG 2+) HELIX 1 AA1 LYS B 22 SER B 35 1 14 HELIX 2 AA2 ARG B 36 GLY B 38 5 3 HELIX 3 AA3 GLU B 61 GLN B 73 1 13 HELIX 4 AA4 SER B 91 LYS B 96 1 6 SHEET 1 AA1 4 ILE B 40 VAL B 45 0 SHEET 2 AA1 4 ALA B 55 PHE B 59 -1 O ILE B 58 N ASP B 42 SHEET 3 AA1 4 THR B 11 ASN B 15 -1 N ILE B 14 O ALA B 55 SHEET 4 AA1 4 ARG B 83 TYR B 86 -1 O GLN B 85 N TYR B 13 SHEET 1 AA2 2 PRO B 76 PHE B 77 0 SHEET 2 AA2 2 LYS B 80 PRO B 81 -1 O LYS B 80 N PHE B 77 LINK C LYS B 50 N MSE B 51 1555 1555 1.33 LINK C MSE B 51 N ARG B 52 1555 1555 1.33 LINK C SER B 71 N MSE B 72 1555 1555 1.33 LINK C MSE B 72 N GLN B 73 1555 1555 1.33 LINK C PRO B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N ARG B 83 1555 1555 1.32 LINK OP1 U C 7 MG MG C 204 1555 1555 2.29 LINK OP1 G C 27 MG MG C 205 1555 1555 2.14 LINK OP2 G C 29 MG MG C 207 1555 1555 2.29 LINK OP1 U C 62 MG MG C 205 1555 1555 2.25 LINK O6 G C 79 MG MG C 206 1555 1555 2.95 LINK OP1 C C 82 MG MG C 204 1555 1555 2.27 LINK OP2 G C 101 MG MG C 203 1555 1555 2.30 LINK OP1 G C 101 MG MG C 207 1555 1555 2.10 LINK OP2 C C 102 MG MG C 207 1555 1555 2.18 LINK O4 U C 103 MG MG C 207 1555 1555 2.65 SITE 1 AC1 13 A C 9 G C 25 G C 26 G C 27 SITE 2 AC1 13 G C 28 G C 60 G C 61 U C 62 SITE 3 AC1 13 C C 95 C C 96 A C 100 C C 109 SITE 4 AC1 13 G C 110 SITE 1 AC2 14 G C 5 C C 6 U C 7 U C 8 SITE 2 AC2 14 A C 64 G C 80 G C 81 C C 82 SITE 3 AC2 14 G C 83 C C 89 C C 90 G C 114 SITE 4 AC2 14 C C 115 G C 116 SITE 1 AC3 1 G C 101 SITE 1 AC4 2 U C 7 C C 82 SITE 1 AC5 2 G C 27 U C 62 SITE 1 AC6 2 G C 79 G C 80 SITE 1 AC7 6 G C 28 G C 29 A C 100 G C 101 SITE 2 AC7 6 C C 102 U C 103 CRYST1 59.280 84.850 230.536 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004338 0.00000