HEADER STRUCTURAL PROTEIN 10-SEP-14 4WEM TITLE CO-COMPLEX STRUCTURE OF THE F4 FIMBRIAL ADHESIN FAEG VARIANT AC WITH TITLE 2 LLAMA SINGLE DOMAIN ANTIBODY V1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: K88 FIMBRIAL PROTEIN AC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-F4+ETEC BACTERIA VHH VARIABLE REGION; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FAEG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_COMMON: LLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS COMPLEX, LLAMA SINGLE DOMAIN ANTIBODY, ADHESIN, NANOBODY, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MOONENS,I.VAN DEN BROECK,E.PARDON,M.DE KERPEL,H.REMAUT,H.DE GREVE REVDAT 4 10-JAN-24 4WEM 1 REMARK REVDAT 3 15-APR-15 4WEM 1 JRNL REVDAT 2 11-FEB-15 4WEM 1 JRNL REVDAT 1 04-FEB-15 4WEM 0 JRNL AUTH K.MOONENS,I.VAN DEN BROECK,E.OKELLO,E.PARDON,M.DE KERPEL, JRNL AUTH 2 H.REMAUT,H.DE GREVE JRNL TITL STRUCTURAL INSIGHT IN THE INHIBITION OF ADHERENCE OF F4 JRNL TITL 2 FIMBRIAE PRODUCING ENTEROTOXIGENIC ESCHERICHIA COLI BY LLAMA JRNL TITL 3 SINGLE DOMAIN ANTIBODIES. JRNL REF VET. RES. V. 46 14 2015 JRNL REFN ISSN 1297-9716 JRNL PMID 25828907 JRNL DOI 10.1186/S13567-015-0151-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.VIRDI,A.CODDENS,S.DE BUCK,S.MILLET,B.M.GODDEERIS,E.COX, REMARK 1 AUTH 2 H.DE GREVE,A.DEPICKER REMARK 1 TITL ORALLY FED SEEDS PRODUCING DESIGNER IGAS PROTECT WEANED REMARK 1 TITL 2 PIGLETS AGAINST ENTEROTOXIGENIC ESCHERICHIA COLI INFECTION. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 110 11809 2013 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 23801763 REMARK 1 DOI 10.1073/PNAS.1301975110 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4739 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.666 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2846 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2677 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3864 ; 2.715 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6137 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;35.224 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;13.692 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3309 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 668 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 1.814 ; 1.570 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1482 ; 1.815 ; 1.568 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1848 ; 2.597 ; 2.341 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1849 ; 2.597 ; 2.343 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1362 ; 3.021 ; 1.938 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1346 ; 2.983 ; 1.916 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1987 ; 4.416 ; 2.752 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3330 ; 7.614 ;15.039 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3180 ; 7.552 ;14.070 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 51.9517 -16.7834 -12.2805 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0584 REMARK 3 T33: 0.0199 T12: -0.0112 REMARK 3 T13: -0.0081 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.5611 L22: 1.9253 REMARK 3 L33: 2.0308 L12: 1.4851 REMARK 3 L13: 1.5417 L23: 1.3292 REMARK 3 S TENSOR REMARK 3 S11: -0.1950 S12: 0.1763 S13: 0.0492 REMARK 3 S21: -0.3190 S22: 0.0309 S23: 0.1253 REMARK 3 S31: -0.1847 S32: -0.1655 S33: 0.1641 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 801 B 921 REMARK 3 ORIGIN FOR THE GROUP (A): 51.2057 -37.5579 3.7071 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.1561 REMARK 3 T33: 0.1455 T12: -0.0349 REMARK 3 T13: -0.0109 T23: 0.1004 REMARK 3 L TENSOR REMARK 3 L11: 0.4781 L22: 5.1370 REMARK 3 L33: 2.9751 L12: 1.0780 REMARK 3 L13: -0.6429 L23: -0.5199 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.1811 S13: -0.1729 REMARK 3 S21: 0.1789 S22: -0.1208 S23: -0.1798 REMARK 3 S31: 0.1725 S32: 0.0570 S33: 0.0892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68481 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 47.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HLR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM BROMIDE, 0.1 M SODIUM REMARK 280 ACETATE PH 5.5, 15 % W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 9 REMARK 465 MET A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 TYR A 21 REMARK 465 ARG A 22 REMARK 465 VAL A 73 REMARK 465 THR A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 GLU A 101 REMARK 465 THR A 102 REMARK 465 LYS A 275 REMARK 465 GLN A 276 REMARK 465 HIS B 922 REMARK 465 HIS B 923 REMARK 465 HIS B 924 REMARK 465 HIS B 925 REMARK 465 HIS B 926 REMARK 465 HIS B 927 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD GLU B 909 O HOH B 1155 1.67 REMARK 500 N ASP A 277 O HOH A 575 1.75 REMARK 500 O HOH A 419 O HOH A 586 1.91 REMARK 500 O HOH A 471 O HOH A 553 1.94 REMARK 500 OD1 ASP B 889 O HOH B 1176 2.00 REMARK 500 OE2 GLU B 909 O HOH B 1155 2.08 REMARK 500 OE1 GLU B 909 O HOH B 1155 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 26 CB GLU A 26 CG -0.181 REMARK 500 GLY A 32 N GLY A 32 CA 0.110 REMARK 500 ARG A 64 CD ARG A 64 NE -0.109 REMARK 500 SER A 203 CB SER A 203 OG -0.100 REMARK 500 TYR A 211 CG TYR A 211 CD1 -0.082 REMARK 500 TRP B 900 CG TRP B 900 CD1 0.115 REMARK 500 TRP B 900 CD1 TRP B 900 NE1 -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 32 C - N - CA ANGL. DEV. = -19.2 DEGREES REMARK 500 GLY A 32 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 LYS A 104 CD - CE - NZ ANGL. DEV. = 15.3 DEGREES REMARK 500 MET A 114 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 165 CB - CG - CD ANGL. DEV. = 23.8 DEGREES REMARK 500 ARG A 165 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 196 CB - CG - CD ANGL. DEV. = -18.5 DEGREES REMARK 500 PHE B 847 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 PHE B 847 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 871 CB - CG - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG B 871 CD - NE - CZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG B 871 NE - CZ - NH1 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG B 871 NE - CZ - NH2 ANGL. DEV. = -11.7 DEGREES REMARK 500 TRP B 900 CD1 - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ILE B 905 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 56.01 30.69 REMARK 500 VAL A 197 -51.63 -120.30 REMARK 500 ASP B 832 -86.36 -111.14 REMARK 500 LYS B 864 -164.98 -110.11 REMARK 500 LEU B 904 46.04 -90.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 165 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 153 10.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HLR RELATED DB: PDB REMARK 900 3HLR CONTAINS THE FAEG PROTEIN WITHOUT THE LLAMA SINGLE DOMAIN REMARK 900 ANTIBODY V1 DBREF 4WEM A 19 262 UNP L7XD53 L7XD53_ECOLX 20 263 DBREF 4WEM B 801 921 UNP R9W2R6 R9W2R6_LAMGL 1 121 SEQADV 4WEM TRP A 9 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM MET A 10 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM THR A 11 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM GLY A 12 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM HIS A 13 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM HIS A 14 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM HIS A 15 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM HIS A 16 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM HIS A 17 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM HIS A 18 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ASP A 263 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ASN A 264 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM LYS A 275 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM GLN A 276 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ASP A 277 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM PHE A 278 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ASN A 279 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM GLY A 280 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM SER A 281 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM VAL A 282 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ASP A 283 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ILE A 284 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM GLY A 285 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM GLY A 286 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM SER A 287 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ILE A 288 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM THR A 289 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM ALA A 290 UNP L7XD53 EXPRESSION TAG SEQADV 4WEM HIS B 922 UNP R9W2R6 EXPRESSION TAG SEQADV 4WEM HIS B 923 UNP R9W2R6 EXPRESSION TAG SEQADV 4WEM HIS B 924 UNP R9W2R6 EXPRESSION TAG SEQADV 4WEM HIS B 925 UNP R9W2R6 EXPRESSION TAG SEQADV 4WEM HIS B 926 UNP R9W2R6 EXPRESSION TAG SEQADV 4WEM HIS B 927 UNP R9W2R6 EXPRESSION TAG SEQRES 1 A 272 TRP MET THR GLY HIS HIS HIS HIS HIS HIS ASP ASP TYR SEQRES 2 A 272 ARG GLN LYS TRP GLU TRP LYS VAL GLY THR GLY LEU ASN SEQRES 3 A 272 GLY PHE GLY ASN VAL LEU ASN ASP LEU THR ASN GLY GLY SEQRES 4 A 272 THR LYS LEU THR ILE THR VAL THR GLY ASN LYS PRO ILE SEQRES 5 A 272 LEU LEU GLY ARG THR LYS GLU ALA PHE ALA THR PRO VAL SEQRES 6 A 272 THR GLY GLY VAL ASP GLY ILE PRO HIS ILE ALA PHE THR SEQRES 7 A 272 ASP TYR GLU GLY ALA SER VAL VAL LEU ARG ASN PRO ASP SEQRES 8 A 272 GLY GLU THR ASN LYS LYS GLY LEU ALA TYR PHE VAL LEU SEQRES 9 A 272 PRO MET LYS ASN ALA GLU GLY THR LYS VAL GLY SER VAL SEQRES 10 A 272 LYS VAL ASN ALA SER TYR ALA GLY VAL LEU GLY ARG GLY SEQRES 11 A 272 GLY VAL THR SER ALA ASP GLY GLU LEU LEU SER LEU PHE SEQRES 12 A 272 ALA ASP GLY LEU SER SER ILE PHE TYR GLY GLY LEU PRO SEQRES 13 A 272 ARG GLY SER GLU LEU SER ALA GLY SER ALA ALA ALA ALA SEQRES 14 A 272 ARG THR LYS LEU PHE GLY SER LEU SER ARG ASN ASP ILE SEQRES 15 A 272 LEU GLY GLN ILE GLN ARG VAL ASN ALA ASN ILE THR SER SEQRES 16 A 272 LEU VAL ASP VAL ALA GLY SER TYR ARG GLU ASN MET GLU SEQRES 17 A 272 TYR THR ASP GLY THR VAL VAL SER ALA ALA TYR ALA LEU SEQRES 18 A 272 GLY ILE ALA ASN GLY GLN THR ILE GLU ALA THR PHE ASN SEQRES 19 A 272 GLN ALA VAL THR THR SER THR GLN TRP SER ALA PRO LEU SEQRES 20 A 272 ASN VAL ALA ILE THR TYR TYR ASP ASN LYS GLN ASP PHE SEQRES 21 A 272 ASN GLY SER VAL ASP ILE GLY GLY SER ILE THR ALA SEQRES 1 B 127 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 127 ALA GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 B 127 ASN VAL ASP ARG ILE ASP ALA MET GLY TRP PHE ARG GLN SEQRES 4 B 127 ALA PRO GLY LYS GLN ARG GLU PHE VAL GLY TYR ILE SER SEQRES 5 B 127 GLU GLY GLY ILE LEU ASN TYR GLY ASP PHE VAL LYS GLY SEQRES 6 B 127 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 B 127 TYR LEU GLN MET SER ASN LEU LYS SER GLU ASP THR GLY SEQRES 8 B 127 VAL TYR PHE CYS ALA ALA SER HIS TRP GLY THR LEU LEU SEQRES 9 B 127 ILE LYS GLY ILE GLU HIS TRP GLY LYS GLY THR GLN VAL SEQRES 10 B 127 THR VAL SER SER HIS HIS HIS HIS HIS HIS HET PO4 A 301 5 HET PO4 A 302 5 HET PO4 A 303 5 HET PO4 B1001 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 HOH *304(H2 O) HELIX 1 AA1 ASN A 41 LEU A 43 5 3 HELIX 2 AA2 ALA A 171 GLY A 183 1 13 HELIX 3 AA3 SER A 186 ARG A 196 1 11 HELIX 4 AA4 VAL B 828 ILE B 831 5 4 HELIX 5 AA5 ASN B 873 LYS B 875 5 3 HELIX 6 AA6 LYS B 886 THR B 890 5 5 SHEET 1 AA1 5 TRP A 25 VAL A 29 0 SHEET 2 AA1 5 LYS A 58 THR A 65 -1 O ARG A 64 N GLU A 26 SHEET 3 AA1 5 VAL A 222 ILE A 231 -1 O LEU A 229 N ILE A 60 SHEET 4 AA1 5 LYS A 121 GLY A 138 -1 N SER A 130 O GLY A 230 SHEET 5 AA1 5 LEU A 107 LYS A 115 -1 N ALA A 108 O ALA A 129 SHEET 1 AA2 5 LYS A 49 THR A 53 0 SHEET 2 AA2 5 THR A 236 PHE A 241 -1 O ILE A 237 N ILE A 52 SHEET 3 AA2 5 LYS A 121 GLY A 138 -1 N SER A 124 O THR A 240 SHEET 4 AA2 5 ASP A 144 SER A 149 -1 O LEU A 148 N LEU A 135 SHEET 5 AA2 5 SER A 203 ASP A 206 1 O VAL A 205 N LEU A 147 SHEET 1 AA3 3 PHE A 36 VAL A 39 0 SHEET 2 AA3 3 GLY A 285 THR A 289 1 O SER A 287 N PHE A 36 SHEET 3 AA3 3 THR A 249 SER A 252 -1 N THR A 249 O ILE A 288 SHEET 1 AA4 4 SER A 92 VAL A 93 0 SHEET 2 AA4 4 PRO A 81 THR A 86 -1 N PHE A 85 O VAL A 93 SHEET 3 AA4 4 LEU A 255 TYR A 261 -1 O THR A 260 N HIS A 82 SHEET 4 AA4 4 PHE A 278 VAL A 282 -1 O PHE A 278 N ILE A 259 SHEET 1 AA5 4 VAL B 802 SER B 807 0 SHEET 2 AA5 4 LEU B 818 GLY B 826 -1 O GLU B 823 N GLN B 805 SHEET 3 AA5 4 THR B 877 MET B 882 -1 O MET B 882 N LEU B 818 SHEET 4 AA5 4 PHE B 867 ASP B 872 -1 N THR B 868 O GLN B 881 SHEET 1 AA6 6 GLY B 810 GLN B 813 0 SHEET 2 AA6 6 THR B 915 SER B 920 1 O GLN B 916 N GLY B 810 SHEET 3 AA6 6 GLY B 891 ALA B 897 -1 N TYR B 893 O THR B 915 SHEET 4 AA6 6 MET B 834 GLN B 839 -1 N PHE B 837 O PHE B 894 SHEET 5 AA6 6 GLU B 846 ILE B 851 -1 O GLU B 846 N ARG B 838 SHEET 6 AA6 6 LEU B 857 TYR B 859 -1 O ASN B 858 N TYR B 850 SHEET 1 AA7 4 GLY B 810 GLN B 813 0 SHEET 2 AA7 4 THR B 915 SER B 920 1 O GLN B 916 N GLY B 810 SHEET 3 AA7 4 GLY B 891 ALA B 897 -1 N TYR B 893 O THR B 915 SHEET 4 AA7 4 HIS B 910 TRP B 911 -1 O HIS B 910 N ALA B 897 SSBOND 1 CYS B 822 CYS B 895 1555 1555 2.02 SITE 1 AC1 6 ASP A 153 GLY A 154 LEU A 155 SER A 157 SITE 2 AC1 6 ARG A 165 ARG A 212 SITE 1 AC2 8 LYS A 180 SER A 186 ASN A 188 HOH A 408 SITE 2 AC2 8 HOH A 495 HOH A 579 GLY B 854 HOH B1140 SITE 1 AC3 4 THR A 141 SER A 142 ALA A 143 HOH A 422 SITE 1 AC4 5 ARG B 845 GLY B 907 ILE B 908 TRP B 911 SITE 2 AC4 5 HOH B1157 CRYST1 145.483 145.483 38.847 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006874 0.003969 0.000000 0.00000 SCALE2 0.000000 0.007937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025742 0.00000