data_4WKJ # _entry.id 4WKJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4WKJ pdb_00004wkj 10.2210/pdb4wkj/pdb WWPDB D_1000200975 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4WKJ _pdbx_database_status.recvd_initial_deposition_date 2014-10-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Davis, R.R.' 1 'Shaban, N.M.' 2 'Perrino, F.W.' 3 'Hollis, T.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Cycle' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1551-4005 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 668 _citation.page_last 673 _citation.title 'Crystal structure of RNA-DNA duplex provides insight into conformational changes induced by RNase H binding.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.4161/15384101.2014.994996 _citation.pdbx_database_id_PubMed 25664393 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Davis, R.R.' 1 ? primary 'Shaban, N.M.' 2 ? primary 'Perrino, F.W.' 3 ? primary 'Hollis, T.' 4 ? # _cell.entry_id 4WKJ _cell.length_a 46.649 _cell.length_b 44.459 _cell.length_c 83.346 _cell.angle_alpha 90.00 _cell.angle_beta 105.27 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WKJ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') ; 3772.296 4 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3') ; 3702.428 4 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GACACCUGAUUC GACACCUGAUUC D,A,C,G ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DT)(DC)(DA)(DG)(DG)(DT)(DG)(DT)(DC)' GAATCAGGTGTC E,B,F,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 C n 1 4 A n 1 5 C n 1 6 C n 1 7 U n 1 8 G n 1 9 A n 1 10 U n 1 11 U n 1 12 C n 2 1 DG n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 DA n 2 7 DG n 2 8 DG n 2 9 DT n 2 10 DG n 2 11 DT n 2 12 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 12 'Escherichia coli' ? 562 ? 2 1 sample 1 12 'Escherichia coli' ? 562 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4WKJ 4WKJ ? 1 ? 1 2 PDB 4WKJ 4WKJ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4WKJ D 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 2 2 4WKJ E 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 3 1 4WKJ A 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 4 2 4WKJ B 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 5 1 4WKJ C 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 6 2 4WKJ F 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 7 1 4WKJ G 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 8 2 4WKJ H 1 ? 12 ? 4WKJ 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4WKJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details 'room temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2 M magnesium formate, 10% 2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'liquid nitrogen cryojet' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 47.57 _reflns.entry_id 4WKJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 26.27 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8314 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.3 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.492 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4WKJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7484 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.27 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.53 _refine.ls_R_factor_obs 0.23874 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23837 _refine.ls_R_factor_R_free 0.24204 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.6 _refine.ls_number_reflns_R_free 796 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 29.455 _refine.aniso_B[1][1] 0.85 _refine.aniso_B[2][2] 1.83 _refine.aniso_B[3][3] -2.35 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.04 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii 0.90 _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1ZBI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.785 _refine.pdbx_overall_ESU_R_Free 0.361 _refine.overall_SU_ML 0.246 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 29.503 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1980 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 1982 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 26.27 _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.details ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.011 ? 2212 'X-RAY DIFFRACTION' ? r_bond_other_d 0.012 0.020 ? 1016 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.698 1.225 ? 3416 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.221 3.000 ? 2432 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 336 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.020 ? 1124 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.014 0.020 ? 476 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 'X-RAY DIFFRACTION' 1 1 1 ? 0.01 0.05 ? ? D 1414 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 1 2 ? 0.01 0.05 ? ? A 1414 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 2 3 ? 0.03 0.05 ? ? D 1404 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 2 4 ? 0.03 0.05 ? ? C 1404 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 3 5 ? 0.04 0.05 ? ? D 1388 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 3 6 ? 0.04 0.05 ? ? G 1388 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 4 7 ? 0.05 0.05 ? ? E 1662 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 4 8 ? 0.05 0.05 ? ? B 1662 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 5 9 ? 0.08 0.05 ? ? E 1636 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 5 10 ? 0.08 0.05 ? ? F 1636 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 6 11 ? 0.07 0.05 ? ? E 1636 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 6 12 ? 0.07 0.05 ? ? H 1636 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 7 13 ? 0.03 0.05 ? ? A 1408 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 7 14 ? 0.03 0.05 ? ? C 1408 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 8 15 ? 0.04 0.05 ? ? A 1396 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 8 16 ? 0.04 0.05 ? ? G 1396 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 9 17 ? 0.06 0.05 ? ? B 1652 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 9 18 ? 0.06 0.05 ? ? F 1652 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 10 19 ? 0.05 0.05 ? ? B 1656 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 10 20 ? 0.05 0.05 ? ? H 1656 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 11 21 ? 0.03 0.05 ? ? C 1412 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 11 22 ? 0.03 0.05 ? ? G 1412 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 1 12 23 ? 0.08 0.05 ? ? F 1638 'interatomic distance' ? ? ? 'X-RAY DIFFRACTION' 2 12 24 ? 0.08 0.05 ? ? H 1638 'interatomic distance' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.number_reflns_R_work 547 _refine_ls_shell.R_factor_R_work 0.503 _refine_ls_shell.percent_reflns_obs 99.50 _refine_ls_shell.R_factor_R_free 0.598 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 D 1 2 A 1 1 D 2 2 C 2 1 D 3 2 G 3 1 E 4 2 B 4 1 E 5 2 F 5 1 E 6 2 H 6 1 A 7 2 C 7 1 A 8 2 G 8 1 B 9 2 F 9 1 B 10 2 H 10 1 C 11 2 G 11 1 F 12 2 H 12 # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 0 A G 1 . A C 12 . D G 1 D C 12 0 ? 1 2 0 C G 1 . C C 12 . A G 1 A C 12 0 ? 2 1 0 A G 1 . A C 12 . D G 1 D C 12 0 ? 2 2 0 E G 1 . E C 12 . C G 1 C C 12 0 ? 3 1 0 A G 1 . A C 12 . D G 1 D C 12 0 ? 3 2 0 G G 1 . G C 12 . G G 1 G C 12 0 ? 4 1 0 B DG 1 . B DC 12 . E DG 1 E DC 12 0 ? 4 2 0 D DG 1 . D DC 12 . B DG 1 B DC 12 0 ? 5 1 0 B DG 1 . B DC 12 . E DG 1 E DC 12 0 ? 5 2 0 F DG 1 . F DC 12 . F DG 1 F DC 12 0 ? 6 1 0 B DG 1 . B DC 12 . E DG 1 E DC 12 0 ? 6 2 0 H DG 1 . H DC 12 . H DG 1 H DC 12 0 ? 7 1 0 C G 1 . C C 12 . A G 1 A C 12 0 ? 7 2 0 E G 1 . E C 12 . C G 1 C C 12 0 ? 8 1 0 C G 1 . C C 12 . A G 1 A C 12 0 ? 8 2 0 G G 1 . G C 12 . G G 1 G C 12 0 ? 9 1 0 D DG 1 . D DC 12 . B DG 1 B DC 12 0 ? 9 2 0 F DG 1 . F DC 12 . F DG 1 F DC 12 0 ? 10 1 0 D DG 1 . D DC 12 . B DG 1 B DC 12 0 ? 10 2 0 H DG 1 . H DC 12 . H DG 1 H DC 12 0 ? 11 1 0 E G 1 . E C 12 . C G 1 C C 12 0 ? 11 2 0 G G 1 . G C 12 . G G 1 G C 12 0 ? 12 1 0 F DG 1 . F DC 12 . F DG 1 F DC 12 0 ? 12 2 0 H DG 1 . H DC 12 . H DG 1 H DC 12 0 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? 4 ? 5 ? 6 ? 7 ? 8 ? 9 ? 10 ? 11 ? 12 ? # _struct.entry_id 4WKJ _struct.title 'Crystallographic Structure of a Dodecameric RNA-DNA Hybrid' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4WKJ _struct_keywords.text 'RNA, DNA, Hybrid, Duplex, RNA-DNA complex' _struct_keywords.pdbx_keywords RNA/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? I N N 3 ? J N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C G 1 N1 ? ? ? 1_555 D DC 12 N3 ? ? A G 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C G 1 N2 ? ? ? 1_555 D DC 12 O2 ? ? A G 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 1 O6 ? ? ? 1_555 D DC 12 N4 ? ? A G 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C A 2 N1 ? ? ? 1_555 D DT 11 N3 ? ? A A 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C A 2 N6 ? ? ? 1_555 D DT 11 O4 ? ? A A 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C C 3 N3 ? ? ? 1_555 D DG 10 N1 ? ? A C 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C C 3 N4 ? ? ? 1_555 D DG 10 O6 ? ? A C 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C C 3 O2 ? ? ? 1_555 D DG 10 N2 ? ? A C 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C A 4 N1 ? ? ? 1_555 D DT 9 N3 ? ? A A 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C A 4 N6 ? ? ? 1_555 D DT 9 O4 ? ? A A 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 5 N3 ? ? ? 1_555 D DG 8 N1 ? ? A C 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 5 N4 ? ? ? 1_555 D DG 8 O6 ? ? A C 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C C 5 O2 ? ? ? 1_555 D DG 8 N2 ? ? A C 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C C 6 N3 ? ? ? 1_555 D DG 7 N1 ? ? A C 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C C 6 N4 ? ? ? 1_555 D DG 7 O6 ? ? A C 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C C 6 O2 ? ? ? 1_555 D DG 7 N2 ? ? A C 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C U 7 N3 ? ? ? 1_555 D DA 6 N1 ? ? A U 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C U 7 O4 ? ? ? 1_555 D DA 6 N6 ? ? A U 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C G 8 N1 ? ? ? 1_555 D DC 5 N3 ? ? A G 8 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 8 N2 ? ? ? 1_555 D DC 5 O2 ? ? A G 8 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 8 O6 ? ? ? 1_555 D DC 5 N4 ? ? A G 8 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C A 9 N1 ? ? ? 1_555 D DT 4 N3 ? ? A A 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C A 9 N6 ? ? ? 1_555 D DT 4 O4 ? ? A A 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C U 10 N3 ? ? ? 1_555 D DA 3 N1 ? ? A U 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C U 10 O4 ? ? ? 1_555 D DA 3 N6 ? ? A U 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C U 11 N3 ? ? ? 1_555 D DA 2 N1 ? ? A U 11 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C U 11 O4 ? ? ? 1_555 D DA 2 N6 ? ? A U 11 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 12 N3 ? ? ? 1_555 D DG 1 N1 ? ? A C 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 12 N4 ? ? ? 1_555 D DG 1 O6 ? ? A C 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? A C 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E G 1 N1 ? ? ? 1_555 F DC 12 N3 ? ? C G 1 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E G 1 N2 ? ? ? 1_555 F DC 12 O2 ? ? C G 1 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E G 1 O6 ? ? ? 1_555 F DC 12 N4 ? ? C G 1 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E A 2 N1 ? ? ? 1_555 F DT 11 N3 ? ? C A 2 F DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E A 2 N6 ? ? ? 1_555 F DT 11 O4 ? ? C A 2 F DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E C 3 N3 ? ? ? 1_555 F DG 10 N1 ? ? C C 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E C 3 N4 ? ? ? 1_555 F DG 10 O6 ? ? C C 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E C 3 O2 ? ? ? 1_555 F DG 10 N2 ? ? C C 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E A 4 N1 ? ? ? 1_555 F DT 9 N3 ? ? C A 4 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E A 4 N6 ? ? ? 1_555 F DT 9 O4 ? ? C A 4 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E C 5 N3 ? ? ? 1_555 F DG 8 N1 ? ? C C 5 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E C 5 N4 ? ? ? 1_555 F DG 8 O6 ? ? C C 5 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E C 5 O2 ? ? ? 1_555 F DG 8 N2 ? ? C C 5 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E C 6 N3 ? ? ? 1_555 F DG 7 N1 ? ? C C 6 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E C 6 N4 ? ? ? 1_555 F DG 7 O6 ? ? C C 6 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E C 6 O2 ? ? ? 1_555 F DG 7 N2 ? ? C C 6 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E U 7 N3 ? ? ? 1_555 F DA 6 N1 ? ? C U 7 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E U 7 O4 ? ? ? 1_555 F DA 6 N6 ? ? C U 7 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E G 8 N1 ? ? ? 1_555 F DC 5 N3 ? ? C G 8 F DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E G 8 N2 ? ? ? 1_555 F DC 5 O2 ? ? C G 8 F DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E G 8 O6 ? ? ? 1_555 F DC 5 N4 ? ? C G 8 F DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E A 9 N1 ? ? ? 1_555 F DT 4 N3 ? ? C A 9 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E A 9 N6 ? ? ? 1_555 F DT 4 O4 ? ? C A 9 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E U 10 N3 ? ? ? 1_555 F DA 3 N1 ? ? C U 10 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E U 10 O4 ? ? ? 1_555 F DA 3 N6 ? ? C U 10 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E U 11 N3 ? ? ? 1_555 F DA 2 N1 ? ? C U 11 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E U 11 O4 ? ? ? 1_555 F DA 2 N6 ? ? C U 11 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E C 12 N3 ? ? ? 1_555 F DG 1 N1 ? ? C C 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E C 12 N4 ? ? ? 1_555 F DG 1 O6 ? ? C C 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E C 12 O2 ? ? ? 1_555 F DG 1 N2 ? ? C C 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? D G 1 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? D G 1 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? D G 1 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 2 N1 ? ? ? 1_555 B DT 11 N3 ? ? D A 2 E DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 2 N6 ? ? ? 1_555 B DT 11 O4 ? ? D A 2 E DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? D C 3 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? D C 3 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? D C 3 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? D A 4 E DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? D A 4 E DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? D C 5 E DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? D C 5 E DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? D C 5 E DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? D C 6 E DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? D C 6 E DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? D C 6 E DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A U 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? D U 7 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A U 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? D U 7 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? D G 8 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 8 N2 ? ? ? 1_555 B DC 5 O2 ? ? D G 8 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? D G 8 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 9 N1 ? ? ? 1_555 B DT 4 N3 ? ? D A 9 E DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 9 N6 ? ? ? 1_555 B DT 4 O4 ? ? D A 9 E DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? D U 10 E DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? D U 10 E DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 11 N3 ? ? ? 1_555 B DA 2 N1 ? ? D U 11 E DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A U 11 O4 ? ? ? 1_555 B DA 2 N6 ? ? D U 11 E DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? D C 12 E DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? D C 12 E DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? D C 12 E DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? G G 1 N1 ? ? ? 1_555 H DC 12 N3 ? ? G G 1 H DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? G G 1 N2 ? ? ? 1_555 H DC 12 O2 ? ? G G 1 H DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? G G 1 O6 ? ? ? 1_555 H DC 12 N4 ? ? G G 1 H DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? G A 2 N1 ? ? ? 1_555 H DT 11 N3 ? ? G A 2 H DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? G A 2 N6 ? ? ? 1_555 H DT 11 O4 ? ? G A 2 H DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? G C 3 N3 ? ? ? 1_555 H DG 10 N1 ? ? G C 3 H DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? G C 3 N4 ? ? ? 1_555 H DG 10 O6 ? ? G C 3 H DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? G C 3 O2 ? ? ? 1_555 H DG 10 N2 ? ? G C 3 H DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? G A 4 N1 ? ? ? 1_555 H DT 9 N3 ? ? G A 4 H DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? G A 4 N6 ? ? ? 1_555 H DT 9 O4 ? ? G A 4 H DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? G C 5 N3 ? ? ? 1_555 H DG 8 N1 ? ? G C 5 H DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? G C 5 N4 ? ? ? 1_555 H DG 8 O6 ? ? G C 5 H DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? G C 5 O2 ? ? ? 1_555 H DG 8 N2 ? ? G C 5 H DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? G C 6 N3 ? ? ? 1_555 H DG 7 N1 ? ? G C 6 H DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? G C 6 N4 ? ? ? 1_555 H DG 7 O6 ? ? G C 6 H DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? G C 6 O2 ? ? ? 1_555 H DG 7 N2 ? ? G C 6 H DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? G U 7 N3 ? ? ? 1_555 H DA 6 N1 ? ? G U 7 H DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? G U 7 O4 ? ? ? 1_555 H DA 6 N6 ? ? G U 7 H DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? G G 8 N1 ? ? ? 1_555 H DC 5 N3 ? ? G G 8 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? G G 8 N2 ? ? ? 1_555 H DC 5 O2 ? ? G G 8 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? G G 8 O6 ? ? ? 1_555 H DC 5 N4 ? ? G G 8 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? G A 9 N1 ? ? ? 1_555 H DT 4 N3 ? ? G A 9 H DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? G A 9 N6 ? ? ? 1_555 H DT 4 O4 ? ? G A 9 H DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? G U 10 N3 ? ? ? 1_555 H DA 3 N1 ? ? G U 10 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? G U 10 O4 ? ? ? 1_555 H DA 3 N6 ? ? G U 10 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? G U 11 N3 ? ? ? 1_555 H DA 2 N1 ? ? G U 11 H DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? G U 11 O4 ? ? ? 1_555 H DA 2 N6 ? ? G U 11 H DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? G C 12 N3 ? ? ? 1_555 H DG 1 N1 ? ? G C 12 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? G C 12 N4 ? ? ? 1_555 H DG 1 O6 ? ? G C 12 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? G C 12 O2 ? ? ? 1_555 H DG 1 N2 ? ? G C 12 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 4WKJ _atom_sites.fract_transf_matrix[1][1] 0.021437 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005852 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022493 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012437 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G D . n A 1 2 A 2 2 2 A A D . n A 1 3 C 3 3 3 C C D . n A 1 4 A 4 4 4 A A D . n A 1 5 C 5 5 5 C C D . n A 1 6 C 6 6 6 C C D . n A 1 7 U 7 7 7 U U D . n A 1 8 G 8 8 8 G G D . n A 1 9 A 9 9 9 A A D . n A 1 10 U 10 10 10 U U D . n A 1 11 U 11 11 11 U U D . n A 1 12 C 12 12 12 C C D . n B 2 1 DG 1 1 1 DG DG E . n B 2 2 DA 2 2 2 DA DA E . n B 2 3 DA 3 3 3 DA DA E . n B 2 4 DT 4 4 4 DT DT E . n B 2 5 DC 5 5 5 DC DC E . n B 2 6 DA 6 6 6 DA DA E . n B 2 7 DG 7 7 7 DG DG E . n B 2 8 DG 8 8 8 DG DG E . n B 2 9 DT 9 9 9 DT DT E . n B 2 10 DG 10 10 10 DG DG E . n B 2 11 DT 11 11 11 DT DT E . n B 2 12 DC 12 12 12 DC DC E . n C 1 1 G 1 1 1 G G A . n C 1 2 A 2 2 2 A A A . n C 1 3 C 3 3 3 C C A . n C 1 4 A 4 4 4 A A A . n C 1 5 C 5 5 5 C C A . n C 1 6 C 6 6 6 C C A . n C 1 7 U 7 7 7 U U A . n C 1 8 G 8 8 8 G G A . n C 1 9 A 9 9 9 A A A . n C 1 10 U 10 10 10 U U A . n C 1 11 U 11 11 11 U U A . n C 1 12 C 12 12 12 C C A . n D 2 1 DG 1 1 1 DG DG B . n D 2 2 DA 2 2 2 DA DA B . n D 2 3 DA 3 3 3 DA DA B . n D 2 4 DT 4 4 4 DT DT B . n D 2 5 DC 5 5 5 DC DC B . n D 2 6 DA 6 6 6 DA DA B . n D 2 7 DG 7 7 7 DG DG B . n D 2 8 DG 8 8 8 DG DG B . n D 2 9 DT 9 9 9 DT DT B . n D 2 10 DG 10 10 10 DG DG B . n D 2 11 DT 11 11 11 DT DT B . n D 2 12 DC 12 12 12 DC DC B . n E 1 1 G 1 1 1 G G C . n E 1 2 A 2 2 2 A A C . n E 1 3 C 3 3 3 C C C . n E 1 4 A 4 4 4 A A C . n E 1 5 C 5 5 5 C C C . n E 1 6 C 6 6 6 C C C . n E 1 7 U 7 7 7 U U C . n E 1 8 G 8 8 8 G G C . n E 1 9 A 9 9 9 A A C . n E 1 10 U 10 10 10 U U C . n E 1 11 U 11 11 11 U U C . n E 1 12 C 12 12 12 C C C . n F 2 1 DG 1 1 1 DG DG F . n F 2 2 DA 2 2 2 DA DA F . n F 2 3 DA 3 3 3 DA DA F . n F 2 4 DT 4 4 4 DT DT F . n F 2 5 DC 5 5 5 DC DC F . n F 2 6 DA 6 6 6 DA DA F . n F 2 7 DG 7 7 7 DG DG F . n F 2 8 DG 8 8 8 DG DG F . n F 2 9 DT 9 9 9 DT DT F . n F 2 10 DG 10 10 10 DG DG F . n F 2 11 DT 11 11 11 DT DT F . n F 2 12 DC 12 12 12 DC DC F . n G 1 1 G 1 1 1 G G G . n G 1 2 A 2 2 2 A A G . n G 1 3 C 3 3 3 C C G . n G 1 4 A 4 4 4 A A G . n G 1 5 C 5 5 5 C C G . n G 1 6 C 6 6 6 C C G . n G 1 7 U 7 7 7 U U G . n G 1 8 G 8 8 8 G G G . n G 1 9 A 9 9 9 A A G . n G 1 10 U 10 10 10 U U G . n G 1 11 U 11 11 11 U U G . n G 1 12 C 12 12 12 C C G . n H 2 1 DG 1 1 1 DG DG H . n H 2 2 DA 2 2 2 DA DA H . n H 2 3 DA 3 3 3 DA DA H . n H 2 4 DT 4 4 4 DT DT H . n H 2 5 DC 5 5 5 DC DC H . n H 2 6 DA 6 6 6 DA DA H . n H 2 7 DG 7 7 7 DG DG H . n H 2 8 DG 8 8 8 DG DG H . n H 2 9 DT 9 9 9 DT DT H . n H 2 10 DG 10 10 10 DG DG H . n H 2 11 DT 11 11 11 DT DT H . n H 2 12 DC 12 12 12 DC DC H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MG 1 101 1 MG MG F . J 4 HOH 1 101 1 HOH HOH H . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 4 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 C,D 3 1 E,F,I 4 1 G,H,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1100 ? 1 MORE -7 ? 1 'SSA (A^2)' 4460 ? 2 'ABSA (A^2)' 1100 ? 2 MORE -6 ? 2 'SSA (A^2)' 4460 ? 3 'ABSA (A^2)' 1150 ? 3 MORE -9 ? 3 'SSA (A^2)' 4520 ? 4 'ABSA (A^2)' 1100 ? 4 MORE -6 ? 4 'SSA (A^2)' 4470 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-22 2 'Structure model' 1 1 2014-10-29 3 'Structure model' 1 2 2015-03-04 4 'Structure model' 1 3 2017-09-06 5 'Structure model' 1 4 2019-12-25 6 'Structure model' 1 5 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Source and taxonomy' 7 5 'Structure model' 'Author supporting evidence' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_entity_src_syn 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' pdbx_audit_support 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' database_2 9 6 'Structure model' pdbx_initial_refinement_model 10 6 'Structure model' refine_hist 11 6 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_database_status.pdb_format_compatible' 3 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 4 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 5 'Structure model' '_pdbx_audit_support.funding_organization' 6 6 'Structure model' '_database_2.pdbx_DOI' 7 6 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_refine_hist.number_atoms_solvent' 9 6 'Structure model' '_refine_hist.pdbx_number_atoms_ligand' 10 6 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 11 6 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 12 6 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 13 6 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 14 6 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 15 6 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 16 6 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 17 6 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 18 6 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 19 6 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 10.8730 -10.0990 10.5900 0.3275 0.3650 0.3697 -0.0626 -0.0302 -0.0209 2.1268 0.2603 2.5966 0.6820 -2.3130 -0.7900 -0.0731 -0.0412 -0.2201 -0.0384 -0.1298 -0.0710 0.1637 0.1581 0.2029 'X-RAY DIFFRACTION' 2 ? refined 12.6500 -6.9380 10.0480 0.2772 0.2954 0.3435 -0.0927 -0.0079 0.0456 3.1984 5.1641 6.1367 3.5677 -0.6204 -1.3223 0.2335 -0.2150 0.2194 -0.0559 -0.5915 0.2450 -0.1296 0.3444 0.3579 'X-RAY DIFFRACTION' 3 ? refined 12.4490 -10.1230 -10.5280 0.2838 0.2773 0.3656 0.1321 -0.0136 0.0489 2.5842 0.0571 2.1628 -0.1466 -1.5712 0.3135 -0.0415 -0.2281 -0.0748 0.0390 -0.0498 0.0207 0.3280 0.0038 0.0913 'X-RAY DIFFRACTION' 4 ? refined 10.7130 -6.9940 -9.9750 0.2836 0.2903 0.3609 0.1094 0.0042 -0.0373 3.5341 4.0912 3.7974 -3.6763 -0.8496 1.6553 0.0905 0.1540 0.1116 -0.0613 -0.3451 -0.1039 -0.0712 -0.3381 0.2547 'X-RAY DIFFRACTION' 5 ? refined 8.9970 5.8500 -35.7990 0.0440 0.0520 0.4048 0.0157 -0.0706 0.0819 4.2671 3.7318 1.0590 -1.6539 -1.8551 1.3279 0.0437 -0.0886 -0.0845 0.0061 0.1455 0.0605 0.0228 0.0138 -0.1892 'X-RAY DIFFRACTION' 6 ? refined 6.8240 7.2330 -33.4320 0.1348 0.0506 0.4405 0.0338 0.0555 0.0106 1.4819 3.6797 4.6971 -1.7806 -1.6305 1.1208 -0.1122 -0.0852 -0.4302 0.0035 0.2714 0.2654 0.0063 -0.1032 -0.1592 'X-RAY DIFFRACTION' 7 ? refined 32.4790 -15.0080 -35.9080 0.1101 0.0556 0.2483 0.0151 -0.0708 -0.0046 5.2058 2.1890 0.3904 -1.3206 -1.3318 0.6343 -0.2146 -0.1962 0.0173 -0.0009 0.2260 0.0927 0.0500 0.0816 -0.0114 'X-RAY DIFFRACTION' 8 ? refined 30.3590 -13.6300 -33.3700 0.1912 0.0695 0.3056 0.0063 -0.0250 -0.0332 2.6008 4.5334 4.4207 -2.1967 -1.9320 -1.1504 -0.1318 -0.0055 -0.1890 0.1652 0.2392 0.2895 0.1520 -0.2237 -0.1074 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 D 1 ? ? D 12 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 E 1 ? ? E 12 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 1 ? ? A 12 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 1 ? ? B 12 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 C 1 ? ? C 12 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 1 ? ? F 12 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 G 1 ? ? G 12 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 H 1 ? ? H 12 ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0085 1 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 2 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? CrystalClear ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 F _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 F _pdbx_validate_rmsd_bond.auth_comp_id_2 DA _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.459 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.148 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" D A 9 ? ? P D A 9 ? ? OP2 D A 9 ? ? 97.24 105.70 -8.46 0.90 N 2 1 "O5'" C C 6 ? ? P C C 6 ? ? OP1 C C 6 ? ? 98.09 105.70 -7.61 0.90 N 3 1 "O5'" G A 4 ? ? P G A 4 ? ? OP2 G A 4 ? ? 117.98 110.70 7.28 1.20 N 4 1 "O5'" G G 8 ? ? P G G 8 ? ? OP2 G G 8 ? ? 99.67 105.70 -6.03 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DA OP3 O N N 73 DA P P N N 74 DA OP1 O N N 75 DA OP2 O N N 76 DA "O5'" O N N 77 DA "C5'" C N N 78 DA "C4'" C N R 79 DA "O4'" O N N 80 DA "C3'" C N S 81 DA "O3'" O N N 82 DA "C2'" C N N 83 DA "C1'" C N R 84 DA N9 N Y N 85 DA C8 C Y N 86 DA N7 N Y N 87 DA C5 C Y N 88 DA C6 C Y N 89 DA N6 N N N 90 DA N1 N Y N 91 DA C2 C Y N 92 DA N3 N Y N 93 DA C4 C Y N 94 DA HOP3 H N N 95 DA HOP2 H N N 96 DA "H5'" H N N 97 DA "H5''" H N N 98 DA "H4'" H N N 99 DA "H3'" H N N 100 DA "HO3'" H N N 101 DA "H2'" H N N 102 DA "H2''" H N N 103 DA "H1'" H N N 104 DA H8 H N N 105 DA H61 H N N 106 DA H62 H N N 107 DA H2 H N N 108 DC OP3 O N N 109 DC P P N N 110 DC OP1 O N N 111 DC OP2 O N N 112 DC "O5'" O N N 113 DC "C5'" C N N 114 DC "C4'" C N R 115 DC "O4'" O N N 116 DC "C3'" C N S 117 DC "O3'" O N N 118 DC "C2'" C N N 119 DC "C1'" C N R 120 DC N1 N N N 121 DC C2 C N N 122 DC O2 O N N 123 DC N3 N N N 124 DC C4 C N N 125 DC N4 N N N 126 DC C5 C N N 127 DC C6 C N N 128 DC HOP3 H N N 129 DC HOP2 H N N 130 DC "H5'" H N N 131 DC "H5''" H N N 132 DC "H4'" H N N 133 DC "H3'" H N N 134 DC "HO3'" H N N 135 DC "H2'" H N N 136 DC "H2''" H N N 137 DC "H1'" H N N 138 DC H41 H N N 139 DC H42 H N N 140 DC H5 H N N 141 DC H6 H N N 142 DG OP3 O N N 143 DG P P N N 144 DG OP1 O N N 145 DG OP2 O N N 146 DG "O5'" O N N 147 DG "C5'" C N N 148 DG "C4'" C N R 149 DG "O4'" O N N 150 DG "C3'" C N S 151 DG "O3'" O N N 152 DG "C2'" C N N 153 DG "C1'" C N R 154 DG N9 N Y N 155 DG C8 C Y N 156 DG N7 N Y N 157 DG C5 C Y N 158 DG C6 C N N 159 DG O6 O N N 160 DG N1 N N N 161 DG C2 C N N 162 DG N2 N N N 163 DG N3 N N N 164 DG C4 C Y N 165 DG HOP3 H N N 166 DG HOP2 H N N 167 DG "H5'" H N N 168 DG "H5''" H N N 169 DG "H4'" H N N 170 DG "H3'" H N N 171 DG "HO3'" H N N 172 DG "H2'" H N N 173 DG "H2''" H N N 174 DG "H1'" H N N 175 DG H8 H N N 176 DG H1 H N N 177 DG H21 H N N 178 DG H22 H N N 179 DT OP3 O N N 180 DT P P N N 181 DT OP1 O N N 182 DT OP2 O N N 183 DT "O5'" O N N 184 DT "C5'" C N N 185 DT "C4'" C N R 186 DT "O4'" O N N 187 DT "C3'" C N S 188 DT "O3'" O N N 189 DT "C2'" C N N 190 DT "C1'" C N R 191 DT N1 N N N 192 DT C2 C N N 193 DT O2 O N N 194 DT N3 N N N 195 DT C4 C N N 196 DT O4 O N N 197 DT C5 C N N 198 DT C7 C N N 199 DT C6 C N N 200 DT HOP3 H N N 201 DT HOP2 H N N 202 DT "H5'" H N N 203 DT "H5''" H N N 204 DT "H4'" H N N 205 DT "H3'" H N N 206 DT "HO3'" H N N 207 DT "H2'" H N N 208 DT "H2''" H N N 209 DT "H1'" H N N 210 DT H3 H N N 211 DT H71 H N N 212 DT H72 H N N 213 DT H73 H N N 214 DT H6 H N N 215 G OP3 O N N 216 G P P N N 217 G OP1 O N N 218 G OP2 O N N 219 G "O5'" O N N 220 G "C5'" C N N 221 G "C4'" C N R 222 G "O4'" O N N 223 G "C3'" C N S 224 G "O3'" O N N 225 G "C2'" C N R 226 G "O2'" O N N 227 G "C1'" C N R 228 G N9 N Y N 229 G C8 C Y N 230 G N7 N Y N 231 G C5 C Y N 232 G C6 C N N 233 G O6 O N N 234 G N1 N N N 235 G C2 C N N 236 G N2 N N N 237 G N3 N N N 238 G C4 C Y N 239 G HOP3 H N N 240 G HOP2 H N N 241 G "H5'" H N N 242 G "H5''" H N N 243 G "H4'" H N N 244 G "H3'" H N N 245 G "HO3'" H N N 246 G "H2'" H N N 247 G "HO2'" H N N 248 G "H1'" H N N 249 G H8 H N N 250 G H1 H N N 251 G H21 H N N 252 G H22 H N N 253 HOH O O N N 254 HOH H1 H N N 255 HOH H2 H N N 256 MG MG MG N N 257 U OP3 O N N 258 U P P N N 259 U OP1 O N N 260 U OP2 O N N 261 U "O5'" O N N 262 U "C5'" C N N 263 U "C4'" C N R 264 U "O4'" O N N 265 U "C3'" C N S 266 U "O3'" O N N 267 U "C2'" C N R 268 U "O2'" O N N 269 U "C1'" C N R 270 U N1 N N N 271 U C2 C N N 272 U O2 O N N 273 U N3 N N N 274 U C4 C N N 275 U O4 O N N 276 U C5 C N N 277 U C6 C N N 278 U HOP3 H N N 279 U HOP2 H N N 280 U "H5'" H N N 281 U "H5''" H N N 282 U "H4'" H N N 283 U "H3'" H N N 284 U "HO3'" H N N 285 U "H2'" H N N 286 U "HO2'" H N N 287 U "H1'" H N N 288 U H3 H N N 289 U H5 H N N 290 U H6 H N N 291 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DA OP3 P sing N N 76 DA OP3 HOP3 sing N N 77 DA P OP1 doub N N 78 DA P OP2 sing N N 79 DA P "O5'" sing N N 80 DA OP2 HOP2 sing N N 81 DA "O5'" "C5'" sing N N 82 DA "C5'" "C4'" sing N N 83 DA "C5'" "H5'" sing N N 84 DA "C5'" "H5''" sing N N 85 DA "C4'" "O4'" sing N N 86 DA "C4'" "C3'" sing N N 87 DA "C4'" "H4'" sing N N 88 DA "O4'" "C1'" sing N N 89 DA "C3'" "O3'" sing N N 90 DA "C3'" "C2'" sing N N 91 DA "C3'" "H3'" sing N N 92 DA "O3'" "HO3'" sing N N 93 DA "C2'" "C1'" sing N N 94 DA "C2'" "H2'" sing N N 95 DA "C2'" "H2''" sing N N 96 DA "C1'" N9 sing N N 97 DA "C1'" "H1'" sing N N 98 DA N9 C8 sing Y N 99 DA N9 C4 sing Y N 100 DA C8 N7 doub Y N 101 DA C8 H8 sing N N 102 DA N7 C5 sing Y N 103 DA C5 C6 sing Y N 104 DA C5 C4 doub Y N 105 DA C6 N6 sing N N 106 DA C6 N1 doub Y N 107 DA N6 H61 sing N N 108 DA N6 H62 sing N N 109 DA N1 C2 sing Y N 110 DA C2 N3 doub Y N 111 DA C2 H2 sing N N 112 DA N3 C4 sing Y N 113 DC OP3 P sing N N 114 DC OP3 HOP3 sing N N 115 DC P OP1 doub N N 116 DC P OP2 sing N N 117 DC P "O5'" sing N N 118 DC OP2 HOP2 sing N N 119 DC "O5'" "C5'" sing N N 120 DC "C5'" "C4'" sing N N 121 DC "C5'" "H5'" sing N N 122 DC "C5'" "H5''" sing N N 123 DC "C4'" "O4'" sing N N 124 DC "C4'" "C3'" sing N N 125 DC "C4'" "H4'" sing N N 126 DC "O4'" "C1'" sing N N 127 DC "C3'" "O3'" sing N N 128 DC "C3'" "C2'" sing N N 129 DC "C3'" "H3'" sing N N 130 DC "O3'" "HO3'" sing N N 131 DC "C2'" "C1'" sing N N 132 DC "C2'" "H2'" sing N N 133 DC "C2'" "H2''" sing N N 134 DC "C1'" N1 sing N N 135 DC "C1'" "H1'" sing N N 136 DC N1 C2 sing N N 137 DC N1 C6 sing N N 138 DC C2 O2 doub N N 139 DC C2 N3 sing N N 140 DC N3 C4 doub N N 141 DC C4 N4 sing N N 142 DC C4 C5 sing N N 143 DC N4 H41 sing N N 144 DC N4 H42 sing N N 145 DC C5 C6 doub N N 146 DC C5 H5 sing N N 147 DC C6 H6 sing N N 148 DG OP3 P sing N N 149 DG OP3 HOP3 sing N N 150 DG P OP1 doub N N 151 DG P OP2 sing N N 152 DG P "O5'" sing N N 153 DG OP2 HOP2 sing N N 154 DG "O5'" "C5'" sing N N 155 DG "C5'" "C4'" sing N N 156 DG "C5'" "H5'" sing N N 157 DG "C5'" "H5''" sing N N 158 DG "C4'" "O4'" sing N N 159 DG "C4'" "C3'" sing N N 160 DG "C4'" "H4'" sing N N 161 DG "O4'" "C1'" sing N N 162 DG "C3'" "O3'" sing N N 163 DG "C3'" "C2'" sing N N 164 DG "C3'" "H3'" sing N N 165 DG "O3'" "HO3'" sing N N 166 DG "C2'" "C1'" sing N N 167 DG "C2'" "H2'" sing N N 168 DG "C2'" "H2''" sing N N 169 DG "C1'" N9 sing N N 170 DG "C1'" "H1'" sing N N 171 DG N9 C8 sing Y N 172 DG N9 C4 sing Y N 173 DG C8 N7 doub Y N 174 DG C8 H8 sing N N 175 DG N7 C5 sing Y N 176 DG C5 C6 sing N N 177 DG C5 C4 doub Y N 178 DG C6 O6 doub N N 179 DG C6 N1 sing N N 180 DG N1 C2 sing N N 181 DG N1 H1 sing N N 182 DG C2 N2 sing N N 183 DG C2 N3 doub N N 184 DG N2 H21 sing N N 185 DG N2 H22 sing N N 186 DG N3 C4 sing N N 187 DT OP3 P sing N N 188 DT OP3 HOP3 sing N N 189 DT P OP1 doub N N 190 DT P OP2 sing N N 191 DT P "O5'" sing N N 192 DT OP2 HOP2 sing N N 193 DT "O5'" "C5'" sing N N 194 DT "C5'" "C4'" sing N N 195 DT "C5'" "H5'" sing N N 196 DT "C5'" "H5''" sing N N 197 DT "C4'" "O4'" sing N N 198 DT "C4'" "C3'" sing N N 199 DT "C4'" "H4'" sing N N 200 DT "O4'" "C1'" sing N N 201 DT "C3'" "O3'" sing N N 202 DT "C3'" "C2'" sing N N 203 DT "C3'" "H3'" sing N N 204 DT "O3'" "HO3'" sing N N 205 DT "C2'" "C1'" sing N N 206 DT "C2'" "H2'" sing N N 207 DT "C2'" "H2''" sing N N 208 DT "C1'" N1 sing N N 209 DT "C1'" "H1'" sing N N 210 DT N1 C2 sing N N 211 DT N1 C6 sing N N 212 DT C2 O2 doub N N 213 DT C2 N3 sing N N 214 DT N3 C4 sing N N 215 DT N3 H3 sing N N 216 DT C4 O4 doub N N 217 DT C4 C5 sing N N 218 DT C5 C7 sing N N 219 DT C5 C6 doub N N 220 DT C7 H71 sing N N 221 DT C7 H72 sing N N 222 DT C7 H73 sing N N 223 DT C6 H6 sing N N 224 G OP3 P sing N N 225 G OP3 HOP3 sing N N 226 G P OP1 doub N N 227 G P OP2 sing N N 228 G P "O5'" sing N N 229 G OP2 HOP2 sing N N 230 G "O5'" "C5'" sing N N 231 G "C5'" "C4'" sing N N 232 G "C5'" "H5'" sing N N 233 G "C5'" "H5''" sing N N 234 G "C4'" "O4'" sing N N 235 G "C4'" "C3'" sing N N 236 G "C4'" "H4'" sing N N 237 G "O4'" "C1'" sing N N 238 G "C3'" "O3'" sing N N 239 G "C3'" "C2'" sing N N 240 G "C3'" "H3'" sing N N 241 G "O3'" "HO3'" sing N N 242 G "C2'" "O2'" sing N N 243 G "C2'" "C1'" sing N N 244 G "C2'" "H2'" sing N N 245 G "O2'" "HO2'" sing N N 246 G "C1'" N9 sing N N 247 G "C1'" "H1'" sing N N 248 G N9 C8 sing Y N 249 G N9 C4 sing Y N 250 G C8 N7 doub Y N 251 G C8 H8 sing N N 252 G N7 C5 sing Y N 253 G C5 C6 sing N N 254 G C5 C4 doub Y N 255 G C6 O6 doub N N 256 G C6 N1 sing N N 257 G N1 C2 sing N N 258 G N1 H1 sing N N 259 G C2 N2 sing N N 260 G C2 N3 doub N N 261 G N2 H21 sing N N 262 G N2 H22 sing N N 263 G N3 C4 sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 U OP3 P sing N N 267 U OP3 HOP3 sing N N 268 U P OP1 doub N N 269 U P OP2 sing N N 270 U P "O5'" sing N N 271 U OP2 HOP2 sing N N 272 U "O5'" "C5'" sing N N 273 U "C5'" "C4'" sing N N 274 U "C5'" "H5'" sing N N 275 U "C5'" "H5''" sing N N 276 U "C4'" "O4'" sing N N 277 U "C4'" "C3'" sing N N 278 U "C4'" "H4'" sing N N 279 U "O4'" "C1'" sing N N 280 U "C3'" "O3'" sing N N 281 U "C3'" "C2'" sing N N 282 U "C3'" "H3'" sing N N 283 U "O3'" "HO3'" sing N N 284 U "C2'" "O2'" sing N N 285 U "C2'" "C1'" sing N N 286 U "C2'" "H2'" sing N N 287 U "O2'" "HO2'" sing N N 288 U "C1'" N1 sing N N 289 U "C1'" "H1'" sing N N 290 U N1 C2 sing N N 291 U N1 C6 sing N N 292 U C2 O2 doub N N 293 U C2 N3 sing N N 294 U N3 C4 sing N N 295 U N3 H3 sing N N 296 U C4 O4 doub N N 297 U C4 C5 sing N N 298 U C5 C6 doub N N 299 U C5 H5 sing N N 300 U C6 H6 sing N N 301 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4WKJ 'double helix' 4WKJ 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B DC 12 1_555 -0.306 -0.024 -0.435 -13.696 -15.963 -2.218 1 D_G1:DC12_E D 1 ? E 12 ? 19 1 1 A A 2 1_555 B DT 11 1_555 -0.340 -0.280 -0.001 -4.673 -16.289 -1.363 2 D_A2:DT11_E D 2 ? E 11 ? 20 1 1 A C 3 1_555 B DG 10 1_555 0.229 -0.084 0.131 4.117 -7.010 3.856 3 D_C3:DG10_E D 3 ? E 10 ? 19 1 1 A A 4 1_555 B DT 9 1_555 -0.107 -0.187 -0.063 3.878 -14.915 1.280 4 D_A4:DT9_E D 4 ? E 9 ? 20 1 1 A C 5 1_555 B DG 8 1_555 0.357 -0.157 -0.165 9.067 -14.304 1.439 5 D_C5:DG8_E D 5 ? E 8 ? 19 1 1 A C 6 1_555 B DG 7 1_555 0.301 -0.204 -0.217 2.775 -5.679 -2.442 6 D_C6:DG7_E D 6 ? E 7 ? 19 1 1 A U 7 1_555 B DA 6 1_555 0.228 0.049 -0.092 2.088 -8.734 2.111 7 D_U7:DA6_E D 7 ? E 6 ? 20 1 1 A G 8 1_555 B DC 5 1_555 -0.443 -0.181 0.178 3.397 -10.602 -2.338 8 D_G8:DC5_E D 8 ? E 5 ? 19 1 1 A A 9 1_555 B DT 4 1_555 -0.219 -0.143 -0.149 2.067 -17.346 -2.187 9 D_A9:DT4_E D 9 ? E 4 ? 20 1 1 A U 10 1_555 B DA 3 1_555 -0.125 -0.237 -0.044 3.822 -15.442 2.812 10 D_U10:DA3_E D 10 ? E 3 ? 20 1 1 A U 11 1_555 B DA 2 1_555 0.179 -0.144 -0.098 5.824 -11.702 2.558 11 D_U11:DA2_E D 11 ? E 2 ? 20 1 1 A C 12 1_555 B DG 1 1_555 0.107 -0.151 0.135 2.476 -6.825 -1.916 12 D_C12:DG1_E D 12 ? E 1 ? 19 1 1 C G 1 1_555 D DC 12 1_555 -0.430 -0.053 -0.364 -13.762 -15.027 -3.145 13 A_G1:DC12_B A 1 ? B 12 ? 19 1 1 C A 2 1_555 D DT 11 1_555 -0.369 -0.169 0.029 -5.047 -15.563 -1.905 14 A_A2:DT11_B A 2 ? B 11 ? 20 1 1 C C 3 1_555 D DG 10 1_555 0.223 -0.058 0.181 4.801 -7.288 2.725 15 A_C3:DG10_B A 3 ? B 10 ? 19 1 1 C A 4 1_555 D DT 9 1_555 -0.146 -0.221 0.018 4.302 -15.932 0.149 16 A_A4:DT9_B A 4 ? B 9 ? 20 1 1 C C 5 1_555 D DG 8 1_555 0.210 -0.166 -0.101 10.018 -15.950 0.328 17 A_C5:DG8_B A 5 ? B 8 ? 19 1 1 C C 6 1_555 D DG 7 1_555 0.106 -0.194 -0.277 4.219 -7.282 -4.143 18 A_C6:DG7_B A 6 ? B 7 ? 19 1 1 C U 7 1_555 D DA 6 1_555 0.205 0.015 -0.069 1.535 -10.206 0.047 19 A_U7:DA6_B A 7 ? B 6 ? 20 1 1 C G 8 1_555 D DC 5 1_555 -0.253 -0.124 0.123 2.694 -13.887 -1.672 20 A_G8:DC5_B A 8 ? B 5 ? 19 1 1 C A 9 1_555 D DT 4 1_555 -0.118 -0.165 -0.181 1.528 -16.953 -1.872 21 A_A9:DT4_B A 9 ? B 4 ? 20 1 1 C U 10 1_555 D DA 3 1_555 -0.006 -0.132 -0.089 3.742 -15.141 4.359 22 A_U10:DA3_B A 10 ? B 3 ? 20 1 1 C U 11 1_555 D DA 2 1_555 0.283 -0.102 -0.164 6.405 -12.328 2.812 23 A_U11:DA2_B A 11 ? B 2 ? 20 1 1 C C 12 1_555 D DG 1 1_555 0.295 -0.208 0.028 3.033 -7.591 -0.709 24 A_C12:DG1_B A 12 ? B 1 ? 19 1 1 E G 1 1_555 F DC 12 1_555 -0.150 -0.009 -0.345 -18.635 -13.260 -2.308 25 C_G1:DC12_F C 1 ? F 12 ? 19 1 1 E A 2 1_555 F DT 11 1_555 -0.245 -0.300 0.196 -6.841 -12.715 -2.501 26 C_A2:DT11_F C 2 ? F 11 ? 20 1 1 E C 3 1_555 F DG 10 1_555 0.036 -0.210 0.345 3.831 -6.492 0.053 27 C_C3:DG10_F C 3 ? F 10 ? 19 1 1 E A 4 1_555 F DT 9 1_555 -0.255 -0.194 0.038 6.385 -13.455 -1.486 28 C_A4:DT9_F C 4 ? F 9 ? 20 1 1 E C 5 1_555 F DG 8 1_555 0.057 -0.139 -0.094 12.112 -15.005 -1.182 29 C_C5:DG8_F C 5 ? F 8 ? 19 1 1 E C 6 1_555 F DG 7 1_555 0.003 -0.209 -0.240 6.873 -7.075 -3.535 30 C_C6:DG7_F C 6 ? F 7 ? 19 1 1 E U 7 1_555 F DA 6 1_555 0.246 -0.085 -0.010 3.862 -13.414 3.566 31 C_U7:DA6_F C 7 ? F 6 ? 20 1 1 E G 8 1_555 F DC 5 1_555 -0.265 -0.213 0.107 1.520 -12.057 3.265 32 C_G8:DC5_F C 8 ? F 5 ? 19 1 1 E A 9 1_555 F DT 4 1_555 0.167 -0.120 -0.204 -4.818 -18.637 2.731 33 C_A9:DT4_F C 9 ? F 4 ? 20 1 1 E U 10 1_555 F DA 3 1_555 0.494 -0.172 0.173 -2.374 -15.430 7.792 34 C_U10:DA3_F C 10 ? F 3 ? 20 1 1 E U 11 1_555 F DA 2 1_555 0.198 -0.093 0.166 2.108 -13.863 1.238 35 C_U11:DA2_F C 11 ? F 2 ? 20 1 1 E C 12 1_555 F DG 1 1_555 -0.029 -0.177 0.050 -2.211 6.655 -3.385 36 C_C12:DG1_F C 12 ? F 1 ? 19 1 1 G G 1 1_555 H DC 12 1_555 -0.272 -0.042 -0.267 -19.932 -11.660 -1.542 37 G_G1:DC12_H G 1 ? H 12 ? 19 1 1 G A 2 1_555 H DT 11 1_555 -0.225 -0.204 0.256 -6.876 -11.898 -0.919 38 G_A2:DT11_H G 2 ? H 11 ? 20 1 1 G C 3 1_555 H DG 10 1_555 0.187 -0.168 0.421 3.168 -6.797 1.076 39 G_C3:DG10_H G 3 ? H 10 ? 19 1 1 G A 4 1_555 H DT 9 1_555 -0.133 -0.221 0.077 6.535 -15.366 -0.548 40 G_A4:DT9_H G 4 ? H 9 ? 20 1 1 G C 5 1_555 H DG 8 1_555 0.083 -0.188 -0.082 11.519 -16.287 0.528 41 G_C5:DG8_H G 5 ? H 8 ? 19 1 1 G C 6 1_555 H DG 7 1_555 -0.024 -0.253 -0.203 3.325 -8.220 -2.625 42 G_C6:DG7_H G 6 ? H 7 ? 19 1 1 G U 7 1_555 H DA 6 1_555 0.244 -0.274 -0.062 -1.350 -14.012 -3.583 43 G_U7:DA6_H G 7 ? H 6 ? 20 1 1 G G 8 1_555 H DC 5 1_555 0.173 -0.135 0.089 -4.711 -14.157 1.187 44 G_G8:DC5_H G 8 ? H 5 ? 19 1 1 G A 9 1_555 H DT 4 1_555 0.267 -0.172 -0.110 -7.317 -16.117 -1.522 45 G_A9:DT4_H G 9 ? H 4 ? 20 1 1 G U 10 1_555 H DA 3 1_555 0.263 -0.143 0.051 -3.272 -8.575 4.033 46 G_U10:DA3_H G 10 ? H 3 ? 20 1 1 G U 11 1_555 H DA 2 1_555 0.197 -0.050 -0.023 5.228 -7.719 -2.018 47 G_U11:DA2_H G 11 ? H 2 ? 20 1 1 G C 12 1_555 H DG 1 1_555 0.255 -0.158 0.145 7.694 0.382 -6.078 48 G_C12:DG1_H G 12 ? H 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B DC 12 1_555 A A 2 1_555 B DT 11 1_555 -0.037 -0.661 2.987 -3.615 4.436 34.557 -1.700 -0.429 2.872 7.404 6.034 35.014 1 DD_G1A2:DT11DC12_EE D 1 ? E 12 ? D 2 ? E 11 ? 1 A A 2 1_555 B DT 11 1_555 A C 3 1_555 B DG 10 1_555 0.630 -1.077 2.989 -0.972 4.468 35.461 -2.329 -1.151 2.819 7.297 1.587 35.746 2 DD_A2C3:DG10DT11_EE D 2 ? E 11 ? D 3 ? E 10 ? 1 A C 3 1_555 B DG 10 1_555 A A 4 1_555 B DT 9 1_555 -0.451 -1.292 3.219 2.049 12.640 28.289 -4.611 1.200 2.398 24.347 -3.948 30.998 3 DD_C3A4:DT9DG10_EE D 3 ? E 10 ? D 4 ? E 9 ? 1 A A 4 1_555 B DT 9 1_555 A C 5 1_555 B DG 8 1_555 0.489 -1.134 3.109 0.176 6.792 36.293 -2.636 -0.751 2.860 10.787 -0.280 36.903 4 DD_A4C5:DG8DT9_EE D 4 ? E 9 ? D 5 ? E 8 ? 1 A C 5 1_555 B DG 8 1_555 A C 6 1_555 B DG 7 1_555 -0.682 -2.050 3.411 -1.246 9.113 26.713 -6.214 1.123 2.611 19.021 2.600 28.225 5 DD_C5C6:DG7DG8_EE D 5 ? E 8 ? D 6 ? E 7 ? 1 A C 6 1_555 B DG 7 1_555 A U 7 1_555 B DA 6 1_555 0.044 -1.886 3.233 -0.007 11.946 30.753 -5.130 -0.079 2.356 21.534 0.013 32.940 6 DD_C6U7:DA6DG7_EE D 6 ? E 7 ? D 7 ? E 6 ? 1 A U 7 1_555 B DA 6 1_555 A G 8 1_555 B DC 5 1_555 -0.423 -1.560 3.127 -2.029 8.360 28.621 -4.582 0.443 2.601 16.447 3.991 29.860 7 DD_U7G8:DC5DA6_EE D 7 ? E 6 ? D 8 ? E 5 ? 1 A G 8 1_555 B DC 5 1_555 A A 9 1_555 B DT 4 1_555 0.174 -1.483 3.237 2.348 9.139 32.006 -4.000 0.060 2.728 16.141 -4.146 33.333 8 DD_G8A9:DT4DC5_EE D 8 ? E 5 ? D 9 ? E 4 ? 1 A A 9 1_555 B DT 4 1_555 A U 10 1_555 B DA 3 1_555 0.661 -1.536 3.207 0.561 2.840 33.852 -3.066 -1.045 3.082 4.866 -0.962 33.971 9 DD_A9U10:DA3DT4_EE D 9 ? E 4 ? D 10 ? E 3 ? 1 A U 10 1_555 B DA 3 1_555 A U 11 1_555 B DA 2 1_555 -0.125 -1.494 3.155 0.215 8.493 32.908 -3.795 0.245 2.696 14.689 -0.371 33.958 10 DD_U10U11:DA2DA3_EE D 10 ? E 3 ? D 11 ? E 2 ? 1 A U 11 1_555 B DA 2 1_555 A C 12 1_555 B DG 1 1_555 0.068 -1.581 3.298 -0.305 8.654 32.417 -4.089 -0.165 2.794 15.166 0.534 33.523 11 DD_U11C12:DG1DA2_EE D 11 ? E 2 ? D 12 ? E 1 ? 1 C G 1 1_555 D DC 12 1_555 C A 2 1_555 D DT 11 1_555 -0.051 -0.709 2.995 -2.832 4.188 34.178 -1.779 -0.310 2.885 7.077 4.785 34.539 12 AA_G1A2:DT11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 C A 2 1_555 D DT 11 1_555 C C 3 1_555 D DG 10 1_555 0.613 -1.060 2.982 -1.201 3.542 35.324 -2.200 -1.162 2.844 5.817 1.973 35.515 13 AA_A2C3:DG10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 C C 3 1_555 D DG 10 1_555 C A 4 1_555 D DT 9 1_555 -0.454 -1.306 3.214 1.725 11.822 28.940 -4.450 1.138 2.473 22.484 -3.280 31.261 14 AA_C3A4:DT9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 C A 4 1_555 D DT 9 1_555 C C 5 1_555 D DG 8 1_555 0.473 -1.120 3.100 0.036 5.908 36.032 -2.541 -0.751 2.887 9.472 -0.057 36.497 15 AA_A4C5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 C C 5 1_555 D DG 8 1_555 C C 6 1_555 D DG 7 1_555 -0.681 -2.001 3.392 -0.851 9.467 27.123 -6.038 1.194 2.580 19.444 1.747 28.711 16 AA_C5C6:DG7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 C C 6 1_555 D DG 7 1_555 C U 7 1_555 D DA 6 1_555 0.037 -1.815 3.289 -0.620 12.765 32.511 -4.785 -0.147 2.426 21.780 1.058 34.870 17 AA_C6U7:DA6DG7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 C U 7 1_555 D DA 6 1_555 C G 8 1_555 D DC 5 1_555 -0.233 -1.470 3.109 -0.872 9.186 29.764 -4.296 0.286 2.558 17.364 1.649 31.130 18 AA_U7G8:DC5DA6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 C G 8 1_555 D DC 5 1_555 C A 9 1_555 D DT 4 1_555 0.212 -1.438 3.234 2.403 7.929 31.978 -3.795 0.009 2.815 14.099 -4.273 33.007 19 AA_G8A9:DT4DC5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 C A 9 1_555 D DT 4 1_555 C U 10 1_555 D DA 3 1_555 0.746 -1.501 3.189 1.099 2.927 33.769 -3.024 -1.111 3.074 5.025 -1.887 33.909 20 AA_A9U10:DA3DT4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 C U 10 1_555 D DA 3 1_555 C U 11 1_555 D DA 2 1_555 -0.173 -1.487 3.148 0.029 7.474 32.378 -3.746 0.308 2.746 13.185 -0.052 33.207 21 AA_U10U11:DA2DA3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 C U 11 1_555 D DA 2 1_555 C C 12 1_555 D DG 1 1_555 0.110 -1.594 3.268 0.219 9.027 32.721 -4.090 -0.155 2.744 15.656 -0.379 33.911 22 AA_U11C12:DG1DA2_BB A 11 ? B 2 ? A 12 ? B 1 ? 1 E G 1 1_555 F DC 12 1_555 E A 2 1_555 F DT 11 1_555 0.030 -0.643 3.021 -2.446 1.853 32.556 -1.437 -0.441 2.970 3.297 4.350 32.697 23 CC_G1A2:DT11DC12_FF C 1 ? F 12 ? C 2 ? F 11 ? 1 E A 2 1_555 F DT 11 1_555 E C 3 1_555 F DG 10 1_555 0.602 -1.093 3.003 -0.668 2.245 34.728 -2.137 -1.098 2.918 3.756 1.117 34.805 24 CC_A2C3:DG10DT11_FF C 2 ? F 11 ? C 3 ? F 10 ? 1 E C 3 1_555 F DG 10 1_555 E A 4 1_555 F DT 9 1_555 -0.288 -1.234 3.187 2.330 4.219 30.173 -3.134 0.984 2.961 8.040 -4.440 30.547 25 CC_C3A4:DT9DG10_FF C 3 ? F 10 ? C 4 ? F 9 ? 1 E A 4 1_555 F DT 9 1_555 E C 5 1_555 F DG 8 1_555 0.578 -1.125 3.136 0.562 4.936 35.515 -2.490 -0.863 2.966 8.043 -0.916 35.850 26 CC_A4C5:DG8DT9_FF C 4 ? F 9 ? C 5 ? F 8 ? 1 E C 5 1_555 F DG 8 1_555 E C 6 1_555 F DG 7 1_555 -0.580 -2.048 3.379 -2.248 9.275 26.665 -6.208 0.698 2.575 19.339 4.687 28.292 27 CC_C5C6:DG7DG8_FF C 5 ? F 8 ? C 6 ? F 7 ? 1 E C 6 1_555 F DG 7 1_555 E U 7 1_555 F DA 6 1_555 0.086 -1.816 3.327 -2.398 9.994 33.109 -4.495 -0.491 2.671 17.033 4.087 34.625 28 CC_C6U7:DA6DG7_FF C 6 ? F 7 ? C 7 ? F 6 ? 1 E U 7 1_555 F DA 6 1_555 E G 8 1_555 F DC 5 1_555 -0.340 -1.444 3.144 -1.653 13.348 30.396 -4.494 0.352 2.337 24.034 2.977 33.174 29 CC_U7G8:DC5DA6_FF C 7 ? F 6 ? C 8 ? F 5 ? 1 E G 8 1_555 F DC 5 1_555 E A 9 1_555 F DT 4 1_555 0.169 -1.377 3.370 3.152 11.161 32.521 -4.000 0.188 2.766 19.184 -5.419 34.474 30 CC_G8A9:DT4DC5_FF C 8 ? F 5 ? C 9 ? F 4 ? 1 E A 9 1_555 F DT 4 1_555 E U 10 1_555 F DA 3 1_555 0.748 -1.462 3.215 0.488 2.630 33.947 -2.902 -1.203 3.106 4.495 -0.835 34.049 31 CC_A9U10:DA3DT4_FF C 9 ? F 4 ? C 10 ? F 3 ? 1 E U 10 1_555 F DA 3 1_555 E U 11 1_555 F DA 2 1_555 -0.440 -1.507 3.088 1.133 4.951 30.490 -3.698 1.025 2.796 9.333 -2.137 30.900 32 CC_U10U11:DA2DA3_FF C 10 ? F 3 ? C 11 ? F 2 ? 1 E U 11 1_555 F DA 2 1_555 E C 12 1_555 F DG 1 1_555 0.201 -1.248 3.463 3.832 3.426 30.549 -3.026 0.394 3.307 6.444 -7.209 30.968 33 CC_U11C12:DG1DA2_FF C 11 ? F 2 ? C 12 ? F 1 ? 1 G G 1 1_555 H DC 12 1_555 G A 2 1_555 H DT 11 1_555 0.070 -0.652 2.990 -2.347 2.776 32.757 -1.577 -0.484 2.914 4.904 4.146 32.953 34 GG_G1A2:DT11DC12_HH G 1 ? H 12 ? G 2 ? H 11 ? 1 G A 2 1_555 H DT 11 1_555 G C 3 1_555 H DG 10 1_555 0.562 -1.121 3.012 -0.962 2.229 34.670 -2.185 -1.074 2.920 3.734 1.612 34.752 35 GG_A2C3:DG10DT11_HH G 2 ? H 11 ? G 3 ? H 10 ? 1 G C 3 1_555 H DG 10 1_555 G A 4 1_555 H DT 9 1_555 -0.274 -1.271 3.151 2.487 2.902 29.930 -2.998 1.004 2.986 5.591 -4.791 30.168 36 GG_C3A4:DT9DG10_HH G 3 ? H 10 ? G 4 ? H 9 ? 1 G A 4 1_555 H DT 9 1_555 G C 5 1_555 H DG 8 1_555 0.579 -1.135 3.139 0.424 4.976 35.249 -2.535 -0.889 2.963 8.166 -0.696 35.589 37 GG_A4C5:DG8DT9_HH G 4 ? H 9 ? G 5 ? H 8 ? 1 G C 5 1_555 H DG 8 1_555 G C 6 1_555 H DG 7 1_555 -0.544 -2.027 3.483 -1.978 7.008 27.249 -5.791 0.658 2.913 14.547 4.106 28.188 38 GG_C5C6:DG7DG8_HH G 5 ? H 8 ? G 6 ? H 7 ? 1 G C 6 1_555 H DG 7 1_555 G U 7 1_555 H DA 6 1_555 -0.721 -1.632 3.380 -2.849 9.916 33.022 -4.240 0.785 2.837 16.937 4.867 34.553 39 GG_C6U7:DA6DG7_HH G 6 ? H 7 ? G 7 ? H 6 ? 1 G U 7 1_555 H DA 6 1_555 G G 8 1_555 H DC 5 1_555 0.435 -1.338 3.259 0.875 17.972 32.401 -4.298 -0.580 2.247 29.538 -1.439 36.944 40 GG_U7G8:DC5DA6_HH G 7 ? H 6 ? G 8 ? H 5 ? 1 G G 8 1_555 H DC 5 1_555 G A 9 1_555 H DT 4 1_555 0.242 -1.471 3.303 3.611 9.665 30.638 -4.272 0.172 2.735 17.673 -6.603 32.289 41 GG_G8A9:DT4DC5_HH G 8 ? H 5 ? G 9 ? H 4 ? 1 G A 9 1_555 H DT 4 1_555 G U 10 1_555 H DA 3 1_555 0.768 -1.628 3.257 1.290 0.886 31.539 -3.156 -1.173 3.239 1.629 -2.372 31.577 42 GG_A9U10:DA3DT4_HH G 9 ? H 4 ? G 10 ? H 3 ? 1 G U 10 1_555 H DA 3 1_555 G U 11 1_555 H DA 2 1_555 -0.491 -1.534 3.076 1.026 4.021 30.424 -3.614 1.110 2.837 7.617 -1.943 30.699 43 GG_U10U11:DA2DA3_HH G 10 ? H 3 ? G 11 ? H 2 ? 1 G U 11 1_555 H DA 2 1_555 G C 12 1_555 H DG 1 1_555 0.122 -1.563 3.303 0.460 8.559 31.237 -4.239 -0.143 2.790 15.532 -0.834 32.363 44 GG_U11C12:DG1DA2_HH G 11 ? H 2 ? G 12 ? H 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'American Heart Association' 'United States' 10GRNT3650033 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM069962 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM108827 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZBI _pdbx_initial_refinement_model.details 'PDB ENTRY 1ZBI' #