HEADER OXIDOREDUCTASE 13-NOV-14 4WX0 TITLE UNDA COMPLEXED WITH BETA-HYDROXYDODECANOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENA/THI-4 FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNDA, OXYGEN-ACTIVATING NON-HEME IRON DEPENDENT COMPND 5 DESATURASE/DECARBOXYLASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PROTEGENS PF-5; SOURCE 3 ORGANISM_TAXID: 220664; SOURCE 4 GENE: PFL_4321; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-HEME IRON DEPENDENT DESATURASE/DECARBOXYLASE, 1-UNDECENE KEYWDS 2 BIOSYNTHESIS, ALIPHATIC MEDIUM-CHAIN 1-ALKENE BIOSYNTHESIS, KEYWDS 3 METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,J.D.H.CATE REVDAT 3 28-FEB-24 4WX0 1 SOURCE JRNL REMARK LINK REVDAT 2 07-JAN-15 4WX0 1 JRNL REVDAT 1 24-DEC-14 4WX0 0 JRNL AUTH Z.RUI,X.LI,X.ZHU,J.LIU,B.DOMIGAN,I.BARR,J.H.CATE,W.ZHANG JRNL TITL MICROBIAL BIOSYNTHESIS OF MEDIUM-CHAIN 1-ALKENES BY A JRNL TITL 2 NONHEME IRON OXIDASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 18237 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25489112 JRNL DOI 10.1073/PNAS.1419701112 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 71841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3839 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 563 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4356 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4057 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5911 ; 1.378 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9287 ; 3.578 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 513 ; 5.260 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;36.661 ;23.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 726 ;12.078 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.573 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4891 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1079 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2052 ; 4.593 ; 2.664 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2051 ; 4.581 ; 2.660 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2565 ; 5.882 ; 3.989 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2566 ; 5.889 ; 3.994 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2303 ; 5.754 ; 3.179 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2285 ; 5.628 ; 3.143 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3323 ; 6.594 ; 4.546 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5897 ; 7.532 ;23.768 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5521 ; 7.134 ;22.580 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8410 ;16.554 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 139 ;40.039 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8739 ;16.337 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 256 B 3 256 15675 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 65.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 1.8 M AMMONIUM SULFATE, 0.2 REMARK 280 MM IRON(II) AMMONIUM SULFATE, PH 6.5-7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.41000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.25500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.41000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.25500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 443 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 421 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 437 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 LEU A 258 REMARK 465 ALA A 259 REMARK 465 GLU A 260 REMARK 465 GLY A 261 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 LEU B 258 REMARK 465 ALA B 259 REMARK 465 GLU B 260 REMARK 465 GLY B 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 201 O HOH A 725 1.64 REMARK 500 O1 SO4 A 306 O HOH A 527 1.78 REMARK 500 O HOH A 407 O HOH A 459 2.08 REMARK 500 O HOH A 596 O HOH A 645 2.10 REMARK 500 O HOH A 459 O HOH A 490 2.13 REMARK 500 OE1 GLN A 67 O HOH A 512 2.13 REMARK 500 NH1 ARG A 96 O1 SO4 A 304 2.15 REMARK 500 O HOH A 608 O HOH A 705 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 54 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 ALA A 200 CA - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 ALA A 200 CA - C - N ANGL. DEV. = 15.9 DEGREES REMARK 500 ALA A 200 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 154 -69.61 -108.20 REMARK 500 ASP A 198 66.37 -104.61 REMARK 500 THR B 154 -69.31 -109.42 REMARK 500 ASP B 198 53.70 -106.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 101 OE1 REMARK 620 2 HIS A 104 ND1 85.8 REMARK 620 3 HIS A 194 NE2 177.9 92.5 REMARK 620 4 HXD A 302 O1 90.3 95.4 88.5 REMARK 620 5 HXD A 302 O8 91.5 176.5 90.1 86.9 REMARK 620 6 PER A 303 O1 97.0 84.8 84.2 172.7 93.2 REMARK 620 7 PER A 303 O2 80.0 114.9 101.9 147.1 62.2 36.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 101 OE1 REMARK 620 2 HIS B 104 ND1 85.1 REMARK 620 3 HIS B 194 NE2 179.1 94.0 REMARK 620 4 HXD B 302 O8 92.0 174.2 88.9 REMARK 620 5 HXD B 302 O1 94.7 94.4 85.5 90.8 REMARK 620 6 PER B 303 O1 95.1 90.1 84.8 85.2 169.5 REMARK 620 7 PER B 303 O2 81.2 116.5 99.2 58.0 148.1 31.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HXD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PER A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HXD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PER B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WWJ RELATED DB: PDB REMARK 900 STRUCTURE OF UNDA REMARK 900 RELATED ID: 4WWZ RELATED DB: PDB REMARK 900 UNDA COMPLEXED WITH 2,3-DODECENOIC ACID DBREF 4WX0 A 1 261 UNP Q4K8M0 Q4K8M0_PSEF5 1 261 DBREF 4WX0 B 1 261 UNP Q4K8M0 Q4K8M0_PSEF5 1 261 SEQADV 4WX0 GLY A -1 UNP Q4K8M0 EXPRESSION TAG SEQADV 4WX0 PRO A 0 UNP Q4K8M0 EXPRESSION TAG SEQADV 4WX0 GLY B -1 UNP Q4K8M0 EXPRESSION TAG SEQADV 4WX0 PRO B 0 UNP Q4K8M0 EXPRESSION TAG SEQRES 1 A 263 GLY PRO MET ILE ASP THR PHE SER ARG THR GLY PRO LEU SEQRES 2 A 263 MET GLU ALA ALA SER TYR PRO ALA TRP THR GLN GLN LEU SEQRES 3 A 263 ILE GLN ASP CYS SER GLU SER LYS ARG ARG VAL VAL GLU SEQRES 4 A 263 HIS GLU LEU TYR GLN ARG MET ARG ASP ASN LYS LEU SER SEQRES 5 A 263 ALA LYS VAL MET ARG GLN TYR LEU ILE GLY GLY TRP PRO SEQRES 6 A 263 VAL VAL GLU GLN PHE ALA LEU TYR MET ALA GLN ASN LEU SEQRES 7 A 263 THR LYS THR ARG PHE ALA ARG HIS PRO GLY GLU ASP MET SEQRES 8 A 263 ALA ARG ARG TRP LEU MET ARG ASN ILE ARG VAL GLU LEU SEQRES 9 A 263 ASN HIS ALA ASP TYR TRP VAL HIS TRP SER ARG ALA HIS SEQRES 10 A 263 GLY VAL THR LEU GLU ASP LEU GLN ALA GLN GLN VAL PRO SEQRES 11 A 263 PRO GLU LEU HIS ALA LEU SER HIS TRP CYS TRP HIS THR SEQRES 12 A 263 SER SER ALA ASP SER LEU ILE VAL ALA ILE ALA ALA THR SEQRES 13 A 263 ASN TYR ALA ILE GLU GLY ALA THR GLY GLU TRP SER ALA SEQRES 14 A 263 LEU VAL CYS SER ASN GLY ILE TYR ALA ALA ALA PHE PRO SEQRES 15 A 263 GLU GLU ASP ARG LYS ARG ALA MET LYS TRP LEU LYS MET SEQRES 16 A 263 HIS ALA GLN TYR ASP ASP ALA HIS PRO TRP GLU ALA LEU SEQRES 17 A 263 GLU ILE ILE VAL THR LEU ALA GLY LEU ASN PRO THR LYS SEQRES 18 A 263 ALA LEU GLN ALA GLU LEU ARG GLN ALA ILE CYS LYS SER SEQRES 19 A 263 TYR ASP TYR MET TYR LEU PHE LEU GLU ARG CYS MET GLN SEQRES 20 A 263 GLN GLU LYS THR ALA VAL THR ARG GLU ARG LEU ALA LEU SEQRES 21 A 263 ALA GLU GLY SEQRES 1 B 263 GLY PRO MET ILE ASP THR PHE SER ARG THR GLY PRO LEU SEQRES 2 B 263 MET GLU ALA ALA SER TYR PRO ALA TRP THR GLN GLN LEU SEQRES 3 B 263 ILE GLN ASP CYS SER GLU SER LYS ARG ARG VAL VAL GLU SEQRES 4 B 263 HIS GLU LEU TYR GLN ARG MET ARG ASP ASN LYS LEU SER SEQRES 5 B 263 ALA LYS VAL MET ARG GLN TYR LEU ILE GLY GLY TRP PRO SEQRES 6 B 263 VAL VAL GLU GLN PHE ALA LEU TYR MET ALA GLN ASN LEU SEQRES 7 B 263 THR LYS THR ARG PHE ALA ARG HIS PRO GLY GLU ASP MET SEQRES 8 B 263 ALA ARG ARG TRP LEU MET ARG ASN ILE ARG VAL GLU LEU SEQRES 9 B 263 ASN HIS ALA ASP TYR TRP VAL HIS TRP SER ARG ALA HIS SEQRES 10 B 263 GLY VAL THR LEU GLU ASP LEU GLN ALA GLN GLN VAL PRO SEQRES 11 B 263 PRO GLU LEU HIS ALA LEU SER HIS TRP CYS TRP HIS THR SEQRES 12 B 263 SER SER ALA ASP SER LEU ILE VAL ALA ILE ALA ALA THR SEQRES 13 B 263 ASN TYR ALA ILE GLU GLY ALA THR GLY GLU TRP SER ALA SEQRES 14 B 263 LEU VAL CYS SER ASN GLY ILE TYR ALA ALA ALA PHE PRO SEQRES 15 B 263 GLU GLU ASP ARG LYS ARG ALA MET LYS TRP LEU LYS MET SEQRES 16 B 263 HIS ALA GLN TYR ASP ASP ALA HIS PRO TRP GLU ALA LEU SEQRES 17 B 263 GLU ILE ILE VAL THR LEU ALA GLY LEU ASN PRO THR LYS SEQRES 18 B 263 ALA LEU GLN ALA GLU LEU ARG GLN ALA ILE CYS LYS SER SEQRES 19 B 263 TYR ASP TYR MET TYR LEU PHE LEU GLU ARG CYS MET GLN SEQRES 20 B 263 GLN GLU LYS THR ALA VAL THR ARG GLU ARG LEU ALA LEU SEQRES 21 B 263 ALA GLU GLY HET FE A 301 1 HET HXD A 302 15 HET PER A 303 2 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET FE B 301 1 HET HXD B 302 15 HET PER B 303 2 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HETNAM FE FE (III) ION HETNAM HXD (3R)-3-HYDROXYDODECANOIC ACID HETNAM PER PEROXIDE ION HETNAM SO4 SULFATE ION HETSYN HXD 3-OH-DODECANOATE FORMUL 3 FE 2(FE 3+) FORMUL 4 HXD 2(C12 H24 O3) FORMUL 5 PER 2(O2 2-) FORMUL 6 SO4 8(O4 S 2-) FORMUL 17 HOH *563(H2 O) HELIX 1 AA1 GLU A 13 TYR A 17 5 5 HELIX 2 AA2 PRO A 18 GLU A 37 1 20 HELIX 3 AA3 HIS A 38 ASP A 46 1 9 HELIX 4 AA4 SER A 50 THR A 77 1 28 HELIX 5 AA5 HIS A 84 GLU A 101 1 18 HELIX 6 AA6 ASN A 103 ALA A 114 1 12 HELIX 7 AA7 THR A 118 GLN A 125 1 8 HELIX 8 AA8 PRO A 128 ASP A 145 1 18 HELIX 9 AA9 SER A 146 ASN A 155 1 10 HELIX 10 AB1 TYR A 156 SER A 171 1 16 HELIX 11 AB2 GLY A 173 PHE A 179 1 7 HELIX 12 AB3 PRO A 180 ALA A 195 1 16 HELIX 13 AB4 ALA A 200 GLY A 214 1 15 HELIX 14 AB5 THR A 218 ALA A 257 1 40 HELIX 15 AB6 GLU B 13 TYR B 17 5 5 HELIX 16 AB7 PRO B 18 GLU B 37 1 20 HELIX 17 AB8 HIS B 38 ASP B 46 1 9 HELIX 18 AB9 SER B 50 THR B 77 1 28 HELIX 19 AC1 HIS B 84 GLU B 101 1 18 HELIX 20 AC2 ASN B 103 ALA B 114 1 12 HELIX 21 AC3 THR B 118 GLN B 125 1 8 HELIX 22 AC4 PRO B 128 ASP B 145 1 18 HELIX 23 AC5 SER B 146 ASN B 155 1 10 HELIX 24 AC6 TYR B 156 SER B 171 1 16 HELIX 25 AC7 GLY B 173 PHE B 179 1 7 HELIX 26 AC8 PRO B 180 GLN B 196 1 17 HELIX 27 AC9 ALA B 200 GLY B 214 1 15 HELIX 28 AD1 THR B 218 ALA B 257 1 40 LINK OE1 GLU A 101 FE FE A 301 1555 1555 2.25 LINK ND1 HIS A 104 FE FE A 301 1555 1555 2.28 LINK NE2 HIS A 194 FE FE A 301 1555 1555 2.29 LINK FE FE A 301 O1 HXD A 302 1555 1555 1.94 LINK FE FE A 301 O8 HXD A 302 1555 1555 2.29 LINK FE FE A 301 O1 PER A 303 1555 1555 2.21 LINK FE FE A 301 O2 PER A 303 1555 1555 2.36 LINK OE1 GLU B 101 FE FE B 301 1555 1555 2.24 LINK ND1 HIS B 104 FE FE B 301 1555 1555 2.22 LINK NE2 HIS B 194 FE FE B 301 1555 1555 2.28 LINK FE FE B 301 O8 HXD B 302 1555 1555 2.25 LINK FE FE B 301 O1 HXD B 302 1555 1555 1.93 LINK FE FE B 301 O1 PER B 303 1555 1555 2.03 LINK FE FE B 301 O2 PER B 303 1555 1555 2.73 SITE 1 AC1 5 GLU A 101 HIS A 104 HIS A 194 HXD A 302 SITE 2 AC1 5 PER A 303 SITE 1 AC2 12 TYR A 41 VAL A 65 PHE A 68 GLU A 101 SITE 2 AC2 12 HIS A 104 GLU A 159 THR A 162 TRP A 190 SITE 3 AC2 12 HIS A 194 PHE A 239 FE A 301 PER A 303 SITE 1 AC3 7 GLU A 101 HIS A 104 GLU A 159 HIS A 194 SITE 2 AC3 7 FE A 301 HXD A 302 HOH A 697 SITE 1 AC4 5 ARG A 92 ARG A 96 HOH A 402 HOH A 533 SITE 2 AC4 5 HOH A 590 SITE 1 AC5 5 ARG A 99 ASN A 103 TYR A 107 HOH A 500 SITE 2 AC5 5 HOH A 743 SITE 1 AC6 3 THR A 218 LYS A 219 HOH A 527 SITE 1 AC7 5 ARG A 113 THR A 118 LEU A 119 HOH A 541 SITE 2 AC7 5 HOH A 562 SITE 1 AC8 5 GLU B 101 HIS B 104 HIS B 194 HXD B 302 SITE 2 AC8 5 PER B 303 SITE 1 AC9 12 TYR B 41 TYR B 57 VAL B 65 PHE B 68 SITE 2 AC9 12 GLU B 101 HIS B 104 GLU B 159 THR B 162 SITE 3 AC9 12 TRP B 190 HIS B 194 FE B 301 PER B 303 SITE 1 AD1 6 GLU B 101 HIS B 104 GLU B 159 HIS B 194 SITE 2 AD1 6 FE B 301 HXD B 302 SITE 1 AD2 3 ARG B 92 ARG B 96 HOH B 559 SITE 1 AD3 5 ARG B 99 ASN B 103 TYR B 107 HOH B 444 SITE 2 AD3 5 HOH B 445 SITE 1 AD4 3 THR B 218 LYS B 219 HOH B 616 SITE 1 AD5 6 ARG B 113 THR B 118 LEU B 119 HOH B 457 SITE 2 AD5 6 HOH B 512 HOH B 612 CRYST1 67.410 73.990 142.510 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014835 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007017 0.00000