HEADER HYDROLASE 16-JAN-15 4XOJ TITLE STRUCTURE OF BOVINE TRYPSIN IN COMPLEX WITH ANALOGUES OF SUNFLOWER TITLE 2 INHIBITOR 1 (SFTI-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-TRYPSIN; COMPND 5 EC: 3.4.21.4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRYPSIN INHIBITOR 1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 40-52; COMPND 10 SYNONYM: SFTI-1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HELIANTHUS ANNUUS; SOURCE 8 ORGANISM_COMMON: COMMON SUNFLOWER; SOURCE 9 ORGANISM_TAXID: 4232 KEYWDS TRYPSIN, SFTI, INHIBITOR, SPLICING, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GOLIK,S.MALICKI,P.GRUDNIK,N.KARNA,D.DEBOWSKI,A.LEGOWSKA,B.WLADYKA, AUTHOR 2 A.GITLIN,K.BRZOZOWSKI,G.DUBIN,K.ROLKA REVDAT 4 10-JAN-24 4XOJ 1 LINK REVDAT 3 09-AUG-17 4XOJ 1 JRNL REMARK REVDAT 2 23-SEP-15 4XOJ 1 JRNL REVDAT 1 12-AUG-15 4XOJ 0 JRNL AUTH N.KARNA,A.LEGOWSKA,S.MALICKI,D.DEBOWSKI,P.GOLIK,A.GITLIN, JRNL AUTH 2 P.GRUDNIK,B.WLADYKA,K.BRZOZOWSKI,G.DUBIN,K.ROLKA JRNL TITL INVESTIGATION OF SERINE-PROTEINASE-CATALYZED PEPTIDE JRNL TITL 2 SPLICING IN ANALOGUES OF SUNFLOWER TRYPSIN INHIBITOR 1 JRNL TITL 3 (SFTI-1). JRNL REF CHEMBIOCHEM V. 16 2036 2015 JRNL REFN ESSN 1439-7633 JRNL PMID 26212347 JRNL DOI 10.1002/CBIC.201500296 REMARK 2 REMARK 2 RESOLUTION. 0.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 183491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.104 REMARK 3 R VALUE (WORKING SET) : 0.103 REMARK 3 FREE R VALUE : 0.114 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9713 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13449 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 719 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.011 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.012 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.008 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.983 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1996 ; 0.032 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1874 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2721 ; 2.128 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4379 ; 1.749 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ;13.449 ; 5.152 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;40.094 ;25.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ; 9.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;17.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 305 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2318 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 5.550 ; 1.040 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1027 ; 5.547 ; 1.031 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1298 ; 5.614 ; 1.535 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1299 ; 5.617 ; 1.543 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 968 ; 8.176 ; 1.195 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 969 ; 8.172 ; 1.202 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1397 ; 9.772 ; 1.679 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2637 ; 8.901 ;10.601 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2632 ; 8.906 ;10.608 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3870 ; 6.984 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 85 ;41.043 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4111 ;18.144 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 - 4.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 193298 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.910 REMARK 200 RESOLUTION RANGE LOW (A) : 23.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4I8G BACKBONE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE TRIHYDRATE, PEG 8000, REMARK 280 AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.19500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.19500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 LYS A -6 REMARK 465 THR A -5 REMARK 465 PHE A -4 REMARK 465 ILE A -3 REMARK 465 PHE A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 154 CD CE NZ REMARK 470 LYS A 215 CD CE NZ REMARK 470 PRO B 13 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 232 O HOH A 678 1.84 REMARK 500 O GLY A 128 NE2 GLN A 130 1.91 REMARK 500 NZ LYS A 223 O HOH A 651 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO A 303 O HOH A 471 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 48 CD GLN A 48 OE1 0.140 REMARK 500 GLN A 130 CG GLN A 130 CD 0.144 REMARK 500 GLN A 130 CD GLN A 130 OE1 0.140 REMARK 500 SER A 199 CA SER A 199 CB 0.100 REMARK 500 GLY B 1 C GLY B 1 O 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 151 CG - CD - CE ANGL. DEV. = -21.3 DEGREES REMARK 500 ARG B 2 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 2 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 -81.19 -120.84 REMARK 500 ASN A 76 -9.24 82.47 REMARK 500 SER A 199 53.90 35.94 REMARK 500 SER A 207 -70.31 -124.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 82 -10.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 617 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 663 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 677 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 684 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 706 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 37 OH REMARK 620 2 HOH A 402 O 50.9 REMARK 620 3 HOH A 476 O 96.2 85.1 REMARK 620 4 HOH A 476 O 75.7 56.6 28.7 REMARK 620 5 ILE B 7 O 106.0 72.0 124.3 110.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE2 REMARK 620 2 ASN A 69 O 91.7 REMARK 620 3 VAL A 72 O 163.2 80.6 REMARK 620 4 GLU A 77 OE2 104.6 155.9 87.7 REMARK 620 5 HOH A 506 O 83.7 84.9 110.2 79.5 REMARK 620 6 HOH A 507 O 79.9 105.6 87.8 94.8 160.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A 301 O2 REMARK 620 2 HOH A 462 O 141.0 REMARK 620 3 HOH A 570 O 81.9 136.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 313 DBREF 4XOJ A -7 238 UNP P00760 TRY1_BOVIN 1 246 DBREF 4XOJ B 1 13 UNP Q4GWU5 SFTI1_HELAN 40 52 SEQRES 1 A 246 MET LYS THR PHE ILE PHE LEU ALA LEU LEU GLY ALA ALA SEQRES 2 A 246 VAL ALA PHE PRO VAL ASP ASP ASP ASP LYS ILE VAL GLY SEQRES 3 A 246 GLY TYR THR CYS GLY ALA ASN THR VAL PRO TYR GLN VAL SEQRES 4 A 246 SER LEU ASN SER GLY TYR HIS PHE CYS GLY GLY SER LEU SEQRES 5 A 246 ILE ASN SER GLN TRP VAL VAL SER ALA ALA HIS CYS TYR SEQRES 6 A 246 LYS SER GLY ILE GLN VAL ARG LEU GLY GLU ASP ASN ILE SEQRES 7 A 246 ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SER ALA SER SEQRES 8 A 246 LYS SER ILE VAL HIS PRO SER TYR ASN SER ASN THR LEU SEQRES 9 A 246 ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SER ALA ALA SEQRES 10 A 246 SER LEU ASN SER ARG VAL ALA SER ILE SER LEU PRO THR SEQRES 11 A 246 SER CYS ALA SER ALA GLY THR GLN CYS LEU ILE SER GLY SEQRES 12 A 246 TRP GLY ASN THR LYS SER SER GLY THR SER TYR PRO ASP SEQRES 13 A 246 VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SER ASP SER SEQRES 14 A 246 SER CYS LYS SER ALA TYR PRO GLY GLN ILE THR SER ASN SEQRES 15 A 246 MET PHE CYS ALA GLY TYR LEU GLU GLY GLY LYS ASP SER SEQRES 16 A 246 CYS GLN GLY ASP SER GLY GLY PRO VAL VAL CYS SER GLY SEQRES 17 A 246 LYS LEU GLN GLY ILE VAL SER TRP GLY SER GLY CYS ALA SEQRES 18 A 246 GLN LYS ASN LYS PRO GLY VAL TYR THR LYS VAL CYS ASN SEQRES 19 A 246 TYR VAL SER TRP ILE LYS GLN THR ILE ALA SER ASN SEQRES 1 B 13 GLY ARG CYS THR LYS SER ILE PRO PRO ILE CYS PHE PRO HET SO4 A 301 5 HET EDO A 302 4 HET EDO A 303 8 HET EDO A 304 8 HET EDO A 305 8 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET CA A 309 1 HET NA A 310 1 HET NA A 311 1 HET NA A 312 1 HET NH4 A 313 1 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM NH4 AMMONIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 O4 S 2- FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 CA CA 2+ FORMUL 12 NA 3(NA 1+) FORMUL 15 NH4 H4 N 1+ FORMUL 16 HOH *360(H2 O) HELIX 1 AA1 ALA A 53 TYR A 57 5 5 HELIX 2 AA2 SER A 159 TYR A 167 1 9 HELIX 3 AA3 TYR A 227 SER A 237 1 11 SHEET 1 AA1 7 TYR A 20 THR A 21 0 SHEET 2 AA1 7 LYS A 151 PRO A 156 -1 O CYS A 152 N TYR A 20 SHEET 3 AA1 7 GLN A 130 GLY A 135 -1 N ILE A 133 O LEU A 153 SHEET 4 AA1 7 PRO A 195 CYS A 198 -1 O VAL A 197 N LEU A 132 SHEET 5 AA1 7 LYS A 201 SER A 210 -1 O LYS A 201 N CYS A 198 SHEET 6 AA1 7 GLY A 219 LYS A 223 -1 O VAL A 220 N TRP A 208 SHEET 7 AA1 7 MET A 175 ALA A 178 -1 N PHE A 176 O TYR A 221 SHEET 1 AA2 6 TYR A 20 THR A 21 0 SHEET 2 AA2 6 LYS A 151 PRO A 156 -1 O CYS A 152 N TYR A 20 SHEET 3 AA2 6 GLN A 130 GLY A 135 -1 N ILE A 133 O LEU A 153 SHEET 4 AA2 6 PRO A 195 CYS A 198 -1 O VAL A 197 N LEU A 132 SHEET 5 AA2 6 LYS A 201 SER A 210 -1 O LYS A 201 N CYS A 198 SHEET 6 AA2 6 ARG B 2 THR B 4 -1 O CYS B 3 N GLY A 209 SHEET 1 AA3 7 GLN A 30 ASN A 34 0 SHEET 2 AA3 7 HIS A 38 ASN A 46 -1 O CYS A 40 N LEU A 33 SHEET 3 AA3 7 TRP A 49 SER A 52 -1 O VAL A 51 N SER A 43 SHEET 4 AA3 7 MET A 101 LEU A 105 -1 O ILE A 103 N VAL A 50 SHEET 5 AA3 7 GLN A 78 VAL A 87 -1 N ILE A 86 O LEU A 102 SHEET 6 AA3 7 GLN A 62 LEU A 65 -1 N LEU A 65 O GLN A 78 SHEET 7 AA3 7 GLN A 30 ASN A 34 -1 N SER A 32 O ARG A 64 SSBOND 1 CYS A 22 CYS A 152 1555 1555 2.06 SSBOND 2 CYS A 40 CYS A 56 1555 1555 2.06 SSBOND 3 CYS A 124 CYS A 225 1555 1555 2.03 SSBOND 4 CYS A 131 CYS A 198 1555 1555 2.04 SSBOND 5 CYS A 163 CYS A 177 1555 1555 2.05 SSBOND 6 CYS A 188 CYS A 212 1555 1555 2.09 SSBOND 7 CYS B 3 CYS B 11 1555 1555 2.05 LINK OH TYR A 37 NA NA A 311 1555 1555 3.17 LINK OE2 GLU A 67 CA CA A 309 1555 1555 2.28 LINK O ASN A 69 CA CA A 309 1555 1555 2.33 LINK O VAL A 72 CA CA A 309 1555 1555 2.30 LINK OE2 GLU A 77 CA CA A 309 1555 1555 2.32 LINK O2 SO4 A 301 NA NA A 312 1555 1555 3.13 LINK CA CA A 309 O HOH A 506 1555 1555 2.36 LINK CA CA A 309 O HOH A 507 1555 1555 2.35 LINK NA NA A 311 O HOH A 402 1555 1555 2.81 LINK NA NA A 311 O AHOH A 476 1555 1555 2.59 LINK NA NA A 311 O BHOH A 476 1555 1555 2.71 LINK NA NA A 311 O ILE B 7 1555 1555 2.58 LINK NA NA A 312 O HOH A 462 1555 1555 2.36 LINK NA NA A 312 O HOH A 570 1555 1555 2.75 CISPEP 1 ILE B 7 PRO B 8 0 -4.99 CISPEP 2 ILE B 7 PRO B 8 0 -5.78 SITE 1 AC1 9 LYS A 164 PRO A 168 GLY A 169 GLN A 233 SITE 2 AC1 9 NA A 312 HOH A 418 HOH A 429 HOH A 503 SITE 3 AC1 9 HOH A 550 SITE 1 AC2 10 ASN A 34 GLY A 36 TYR A 37 ILE A 70 SITE 2 AC2 10 ASN A 71 SER A 159 SER A 161 SER A 162 SITE 3 AC2 10 EDO A 303 HOH A 440 SITE 1 AC3 10 ARG A 64 ILE A 70 ASN A 71 VAL A 73 SITE 2 AC3 10 SER A 161 SER A 162 EDO A 302 HOH A 416 SITE 3 AC3 10 HOH A 471 HOH A 507 SITE 1 AC4 9 CYS A 124 ALA A 125 PHE A 176 GLN A 203 SITE 2 AC4 9 LYS A 223 CYS A 225 EDO A 308 HOH A 518 SITE 3 AC4 9 HOH A 651 SITE 1 AC5 4 ASN A 92 THR A 95 ASN A 97 HOH A 414 SITE 1 AC6 6 TYR A 20 CYS A 22 THR A 26 HOH A 666 SITE 2 AC6 6 HOH A 674 HOH A 742 SITE 1 AC7 6 ILE A 45 ASN A 46 LYS A 232 HOH A 621 SITE 2 AC7 6 HOH A 678 HOH A 708 SITE 1 AC8 6 ALA A 127 ILE A 157 LEU A 158 EDO A 304 SITE 2 AC8 6 HOH A 411 HOH A 631 SITE 1 AC9 6 GLU A 67 ASN A 69 VAL A 72 GLU A 77 SITE 2 AC9 6 HOH A 506 HOH A 507 SITE 1 AD1 2 GLN A 214 LYS A 215 SITE 1 AD2 6 TYR A 37 LYS A 58 HOH A 402 HOH A 476 SITE 2 AD2 6 ILE B 7 PRO B 8 SITE 1 AD3 3 SO4 A 301 HOH A 462 HOH A 570 SITE 1 AD4 3 SER A 162 HOH A 404 HOH A 606 CRYST1 62.390 63.050 69.170 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014457 0.00000