data_4XSN # _entry.id 4XSN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4XSN WWPDB D_1000206001 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4XQY PDB . unspecified 4XQZ PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4XSN _pdbx_database_status.recvd_initial_deposition_date 2015-01-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rohner, M.' 1 'Medina-Molner, A.' 2 'Spingler, B.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Inorg.Chem. _citation.journal_id_ASTM INOCAJ _citation.journal_id_CSD 0009 _citation.journal_id_ISSN 0020-1669 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 55 _citation.language ? _citation.page_first 6130 _citation.page_last 6140 _citation.title 'N,N,O and N,O,N Meridional cis Coordination of Two Guanines to Copper(II) by d(CGCGCG)2.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.inorgchem.6b00672 _citation.pdbx_database_id_PubMed 27266259 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rohner, M.' 1 primary 'Medina-Molner, A.' 2 primary 'Spingler, B.' 3 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4XSN _cell.details ? _cell.formula_units_Z ? _cell.length_a 18.799 _cell.length_a_esd ? _cell.length_b 29.077 _cell.length_b_esd ? _cell.length_c 43.278 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*(BGM)P*CP*GP*CP*GP)-3') ; 1889.101 2 ? ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ? 3 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(BGM)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 BGM n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4XSN _struct_ref.pdbx_db_accession 4XSN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4XSN A 1 ? 6 ? 4XSN 1 ? 6 ? 1 6 2 1 4XSN B 1 ? 6 ? 4XSN 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BGM 'DNA linking' n "8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 Br N5 O7 P' 426.117 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4XSN _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.59 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'cacodylate, MPD, calcium lactate, potassium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 183 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type STOE _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2005-12-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator graphite _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'Cu FINE FOCUS' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4XSN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.452 _reflns.d_resolution_low 17.359 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7657 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 4 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1 _reflns.pdbx_Rmerge_I_obs 0.0526 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.46 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 0.3264 _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.55 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 87.9 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4XSN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.452 _refine.ls_d_res_low 17.359 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters 2609 _refine.ls_number_reflns_all 7657 _refine.ls_number_reflns_obs 7657 _refine.ls_number_reflns_R_free 378 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints 5420 _refine.ls_percent_reflns_obs 100.0 _refine.ls_percent_reflns_R_free 4.937 _refine.ls_R_factor_all 0.121 _refine.ls_R_factor_obs 0.120 _refine.ls_R_factor_R_free 0.157 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 4XSN _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 341.0 _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 248 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 346 _refine_hist.d_res_high 1.452 _refine_hist.d_res_low 17.359 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? .0131 ? ? ? s_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.367 ? ? ? s_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0 ? ? ? s_similar_dist ? ? 'X-RAY DIFFRACTION' ? 0.003 ? ? ? s_from_restr_planes ? ? 'X-RAY DIFFRACTION' ? 0.0 ? ? ? s_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? 0.04 ? ? ? s_non_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? 0.0186 ? ? ? s_anti_bump_dis_restr ? ? 'X-RAY DIFFRACTION' ? 0.0089 ? ? ? s_rigid_bond_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? 0.0216 ? ? ? s_similar_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? .0000 ? ? ? s_approx_iso_adps ? ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4XSN _pdbx_refine.R_factor_all_no_cutoff 0.121 _pdbx_refine.R_factor_obs_no_cutoff 0.120 _pdbx_refine.free_R_factor_no_cutoff 0.157 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 4.937 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 378 _pdbx_refine.R_factor_all_4sig_cutoff 0.107 _pdbx_refine.R_factor_obs_4sig_cutoff 0.106 _pdbx_refine.free_R_factor_4sig_cutoff 0.143 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.975 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 309 _pdbx_refine.number_reflns_obs_4sig_cutoff 6211 # _struct.entry_id 4XSN _struct.title 'Copper(II) bound to the Z-DNA form of d(CGCGCG)' _struct.pdbx_descriptor ;DNA (5'-D(*CP*(BGM)P*CP*GP*CP*GP)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4XSN _struct_keywords.text 'Z-DNA, copper(II), DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A DC 1 "O3'" ? ? ? 1_555 A BGM 2 P ? ? A DC 1 A BGM 2 1_555 ? ? ? ? ? ? ? 1.609 ? covale2 covale both ? A BGM 2 "O3'" ? ? ? 1_555 A DC 3 P ? ? A BGM 2 A DC 3 1_555 ? ? ? ? ? ? ? 1.612 ? covale3 covale both ? B DC 1 "O3'" ? ? ? 1_555 B BGM 2 P ? ? B DC 1 B BGM 2 1_555 ? ? ? ? ? ? ? 1.573 ? covale4 covale both ? B BGM 2 "O3'" ? ? ? 1_555 B DC 3 P B ? B BGM 2 B DC 3 1_555 ? ? ? ? ? ? ? 1.593 ? covale5 covale both ? B BGM 2 "O3'" ? ? ? 1_555 B DC 3 P A ? B BGM 2 B DC 3 1_555 ? ? ? ? ? ? ? 1.595 ? metalc1 metalc ? ? B DG 6 N7 ? ? ? 1_555 C CU . CU ? ? B DG 6 B CU 101 1_555 ? ? ? ? ? ? ? 2.009 ? metalc2 metalc ? ? C CU . CU ? ? ? 1_555 E HOH . O ? ? B CU 101 B HOH 213 1_555 ? ? ? ? ? ? ? 2.066 ? metalc3 metalc ? ? C CU . CU ? ? ? 1_555 E HOH . O ? ? B CU 101 B HOH 208 1_555 ? ? ? ? ? ? ? 2.369 ? metalc4 metalc ? ? B DG 4 N7 ? ? ? 1_555 C CU . CU ? ? B DG 4 B CU 101 4_566 ? ? ? ? ? ? ? 2.572 ? metalc5 metalc ? ? B DG 4 O6 ? ? ? 1_555 C CU . CU ? ? B DG 4 B CU 101 4_566 ? ? ? ? ? ? ? 2.010 ? metalc6 metalc ? ? C CU . CU ? ? ? 1_555 E HOH . O ? ? B CU 101 B HOH 211 4_466 ? ? ? ? ? ? ? 1.954 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A BGM 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A BGM 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A BGM 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A BGM 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A BGM 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A BGM 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B BGM 2 N1 ? ? A DC 5 B BGM 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B BGM 2 O6 ? ? A DC 5 B BGM 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B BGM 2 N2 ? ? A DC 5 B BGM 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id CU _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue CU B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DG B 4 ? DG B 4 . ? 4_466 ? 2 AC1 5 DG B 6 ? DG B 6 . ? 1_555 ? 3 AC1 5 HOH E . ? HOH B 208 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH B 211 . ? 4_466 ? 5 AC1 5 HOH E . ? HOH B 213 . ? 1_555 ? # _database_PDB_matrix.entry_id 4XSN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4XSN _atom_sites.fract_transf_matrix[1][1] 0.053194 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034391 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023106 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C CU N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 BGM 2 2 2 BGM BGM A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 BGM 2 2 2 BGM BGM B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU 1 101 1 CU CU B . D 3 HOH 1 101 168 HOH HOH A . D 3 HOH 2 102 164 HOH HOH A . D 3 HOH 3 103 172 HOH HOH A . D 3 HOH 4 104 166 HOH HOH A . D 3 HOH 5 105 130 HOH HOH A . D 3 HOH 6 106 134 HOH HOH A . D 3 HOH 7 107 144 HOH HOH A . D 3 HOH 8 108 162 HOH HOH A . D 3 HOH 9 109 176 HOH HOH A . D 3 HOH 10 110 106 HOH HOH A . D 3 HOH 11 111 160 HOH HOH A . D 3 HOH 12 112 187 HOH HOH A . D 3 HOH 13 113 109 HOH HOH A . D 3 HOH 14 114 107 HOH HOH A . D 3 HOH 15 115 120 HOH HOH A . D 3 HOH 16 116 127 HOH HOH A . D 3 HOH 17 117 192 HOH HOH A . D 3 HOH 18 118 112 HOH HOH A . D 3 HOH 19 119 104 HOH HOH A . D 3 HOH 20 120 159 HOH HOH A . D 3 HOH 21 121 105 HOH HOH A . D 3 HOH 22 122 108 HOH HOH A . D 3 HOH 23 123 114 HOH HOH A . D 3 HOH 24 124 118 HOH HOH A . D 3 HOH 25 125 126 HOH HOH A . D 3 HOH 26 126 177 HOH HOH A . D 3 HOH 27 127 157 HOH HOH A . D 3 HOH 28 128 116 HOH HOH A . D 3 HOH 29 129 163 HOH HOH A . D 3 HOH 30 130 156 HOH HOH A . D 3 HOH 31 131 178 HOH HOH A . D 3 HOH 32 132 195 HOH HOH A . D 3 HOH 33 133 165 HOH HOH A . D 3 HOH 34 134 190 HOH HOH A . D 3 HOH 35 135 139 HOH HOH A . D 3 HOH 36 136 196 HOH HOH A . D 3 HOH 37 137 198 HOH HOH A . D 3 HOH 38 138 182 HOH HOH A . D 3 HOH 39 139 175 HOH HOH A . D 3 HOH 40 140 194 HOH HOH A . D 3 HOH 41 141 140 HOH HOH A . D 3 HOH 42 142 122 HOH HOH A . D 3 HOH 43 143 128 HOH HOH A . D 3 HOH 44 144 129 HOH HOH A . D 3 HOH 45 145 131 HOH HOH A . D 3 HOH 46 146 145 HOH HOH A . D 3 HOH 47 147 146 HOH HOH A . D 3 HOH 48 148 151 HOH HOH A . D 3 HOH 49 149 153 HOH HOH A . D 3 HOH 50 150 179 HOH HOH A . D 3 HOH 51 151 185 HOH HOH A . E 3 HOH 1 201 110 HOH HOH B . E 3 HOH 2 202 188 HOH HOH B . E 3 HOH 3 203 189 HOH HOH B . E 3 HOH 4 204 135 HOH HOH B . E 3 HOH 5 205 117 HOH HOH B . E 3 HOH 6 206 124 HOH HOH B . E 3 HOH 7 207 111 HOH HOH B . E 3 HOH 8 208 102 HOH HOH B . E 3 HOH 9 209 137 HOH HOH B . E 3 HOH 10 210 115 HOH HOH B . E 3 HOH 11 211 100 HOH HOH B . E 3 HOH 12 212 138 HOH HOH B . E 3 HOH 13 213 101 HOH HOH B . E 3 HOH 14 214 136 HOH HOH B . E 3 HOH 15 215 197 HOH HOH B . E 3 HOH 16 216 171 HOH HOH B . E 3 HOH 17 217 147 HOH HOH B . E 3 HOH 18 218 161 HOH HOH B . E 3 HOH 19 219 148 HOH HOH B . E 3 HOH 20 220 186 HOH HOH B . E 3 HOH 21 221 155 HOH HOH B . E 3 HOH 22 222 193 HOH HOH B . E 3 HOH 23 223 167 HOH HOH B . E 3 HOH 24 224 141 HOH HOH B . E 3 HOH 25 225 158 HOH HOH B . E 3 HOH 26 226 149 HOH HOH B . E 3 HOH 27 227 119 HOH HOH B . E 3 HOH 28 228 121 HOH HOH B . E 3 HOH 29 229 133 HOH HOH B . E 3 HOH 30 230 173 HOH HOH B . E 3 HOH 31 231 181 HOH HOH B . E 3 HOH 32 232 125 HOH HOH B . E 3 HOH 33 233 170 HOH HOH B . E 3 HOH 34 234 180 HOH HOH B . E 3 HOH 35 235 183 HOH HOH B . E 3 HOH 36 236 154 HOH HOH B . E 3 HOH 37 237 174 HOH HOH B . E 3 HOH 38 238 123 HOH HOH B . E 3 HOH 39 239 103 HOH HOH B . E 3 HOH 40 240 113 HOH HOH B . E 3 HOH 41 241 132 HOH HOH B . E 3 HOH 42 242 142 HOH HOH B . E 3 HOH 43 243 143 HOH HOH B . E 3 HOH 44 244 152 HOH HOH B . E 3 HOH 45 245 169 HOH HOH B . E 3 HOH 46 246 184 HOH HOH B . E 3 HOH 47 247 199 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1830 ? 1 MORE 4 ? 1 'SSA (A^2)' 2270 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 213 ? 1_555 88.2 ? 2 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 208 ? 1_555 103.7 ? 3 O ? E HOH . ? B HOH 213 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 208 ? 1_555 89.9 ? 4 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 N7 ? B DG 4 ? B DG 4 ? 1_555 97.5 ? 5 O ? E HOH . ? B HOH 213 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 N7 ? B DG 4 ? B DG 4 ? 1_555 36.9 ? 6 O ? E HOH . ? B HOH 208 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 N7 ? B DG 4 ? B DG 4 ? 1_555 53.0 ? 7 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 84.9 ? 8 O ? E HOH . ? B HOH 213 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 40.5 ? 9 O ? E HOH . ? B HOH 208 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 52.1 ? 10 N7 ? B DG 4 ? B DG 4 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 13.4 ? 11 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 211 ? 4_466 93.5 ? 12 O ? E HOH . ? B HOH 213 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 211 ? 4_466 178.2 ? 13 O ? E HOH . ? B HOH 208 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 211 ? 4_466 89.4 ? 14 N7 ? B DG 4 ? B DG 4 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 211 ? 4_466 142.4 ? 15 O6 ? B DG 4 ? B DG 4 ? 1_555 CU ? C CU . ? B CU 101 ? 1_555 O ? E HOH . ? B HOH 211 ? 4_466 139.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-03 2 'Structure model' 1 1 2016-07-13 3 'Structure model' 1 2 2017-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.source' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? X-Area ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELXL-97 ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.04 108.30 5.74 0.30 N 2 1 C4 A DC 3 ? ? C5 A DC 3 ? ? C6 A DC 3 ? ? 114.20 117.40 -3.20 0.50 N 3 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 125.31 121.00 4.31 0.50 N 4 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 126.30 121.90 4.40 0.70 N 5 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 102.49 109.40 -6.91 0.80 N 6 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.38 108.30 5.08 0.30 N 7 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 123.09 119.90 3.19 0.50 N 8 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.64 108.00 -5.36 0.70 N 9 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 112.43 108.30 4.13 0.30 N 10 1 "C3'" B DC 1 ? ? "O3'" B DC 1 ? ? P B BGM 2 ? ? 128.01 119.70 8.31 1.20 Y 11 1 N3 B DG 4 ? ? C4 B DG 4 ? ? C5 B DG 4 ? ? 125.35 128.60 -3.25 0.50 N 12 1 C4 B DG 4 ? ? C5 B DG 4 ? ? C6 B DG 4 ? ? 122.59 118.80 3.79 0.60 N 13 1 N3 B DG 4 ? ? C4 B DG 4 ? ? N9 B DG 4 ? ? 130.40 126.00 4.40 0.60 N 14 1 C6 B DG 4 ? ? C5 B DG 4 ? ? N7 B DG 4 ? ? 125.26 130.40 -5.14 0.60 N 15 1 N1 B DG 4 ? ? C6 B DG 4 ? ? O6 B DG 4 ? ? 126.20 119.90 6.30 0.60 N 16 1 C5 B DG 4 ? ? C6 B DG 4 ? ? O6 B DG 4 ? ? 123.82 128.60 -4.78 0.60 N 17 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.33 108.30 4.03 0.30 N 18 1 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 119.05 121.90 -2.85 0.40 N 19 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 103.76 108.00 -4.24 0.70 N # _ndb_struct_conf_na.entry_id 4XSN _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.316 -0.138 0.063 4.340 5.179 2.047 1 A_DC1:DG6_B A 1 ? B 6 ? 19 1 1 A BGM 2 1_555 B DC 5 1_555 0.367 -0.080 -0.027 -0.173 0.879 0.150 2 A_BGM2:DC5_B A 2 ? B 5 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.461 -0.192 0.040 6.546 -6.398 0.998 3 A_DC3:DG4_B A 3 ? B 4 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.304 -0.103 -0.074 -6.059 -1.668 0.165 4 A_DG4:DC3_B A 4 ? B 3 ? 19 1 1 A DC 5 1_555 B BGM 2 1_555 -0.361 -0.151 -0.016 2.505 1.217 1.524 5 A_DC5:BGM2_B A 5 ? B 2 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.300 -0.156 0.235 -0.452 6.965 1.549 6 A_DG6:DC1_B A 6 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A BGM 2 1_555 B DC 5 1_555 -0.177 5.395 3.572 1.452 1.570 -9.439 -34.991 1.738 2.637 -9.385 8.678 -9.678 1 AA_DC1BGM2:DC5DG6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 A BGM 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.505 -1.177 3.351 -0.681 -2.259 -50.264 1.548 -0.643 3.292 2.658 -0.801 -50.316 2 AA_BGM2DC3:DG4DC5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.055 5.329 3.760 2.792 -3.876 -3.701 -14.888 26.214 5.696 42.399 30.542 -6.042 3 AA_DC3DG4:DC3DG4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B BGM 2 1_555 0.201 -1.183 3.264 -0.092 -4.961 -50.375 1.728 0.229 3.142 5.812 -0.108 -50.603 4 AA_DG4DC5:BGM2DC3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 A DC 5 1_555 B BGM 2 1_555 A DG 6 1_555 B DC 1 1_555 0.033 5.476 3.538 0.250 0.860 -9.699 -33.960 0.690 3.040 -5.071 1.476 -9.740 5 AA_DC5DG6:DC1BGM2_BB A 5 ? B 2 ? A 6 ? B 1 ? # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 water HOH #