HEADER TRANSFERASE/DNA 27-JAN-15 4XVI TITLE BINARY COMPLEX OF HUMAN POLYMERASE NU AND DNA WITH THE FINGER DOMAIN TITLE 2 AJAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE NU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE (UNP RESIDUES 194-859); COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*CP*TP*CP*TP*GP*AP*CP*GP*CP*TP*AP*GP*G)-3'); COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*CP*AP*G)-3'); COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLEXM; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606 KEYWDS POL NU, POLYMERASE, ERROR-PRONE DNA SYNTHESIS, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-S.LEE,W.YANG REVDAT 6 28-FEB-24 4XVI 1 REMARK REVDAT 5 25-DEC-19 4XVI 1 REMARK REVDAT 4 27-SEP-17 4XVI 1 SOURCE KEYWDS REMARK REVDAT 3 15-APR-15 4XVI 1 JRNL REVDAT 2 01-APR-15 4XVI 1 JRNL REVDAT 1 11-MAR-15 4XVI 0 JRNL AUTH Y.S.LEE,Y.GAO,W.YANG JRNL TITL HOW A HOMOLOG OF HIGH-FIDELITY REPLICASES CONDUCTS MUTAGENIC JRNL TITL 2 DNA SYNTHESIS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 298 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 25775266 JRNL DOI 10.1038/NSMB.2985 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6568 - 7.0458 0.99 2674 130 0.1778 0.1971 REMARK 3 2 7.0458 - 5.6048 1.00 2625 142 0.2349 0.2370 REMARK 3 3 5.6048 - 4.9000 1.00 2627 142 0.2099 0.2228 REMARK 3 4 4.9000 - 4.4536 1.00 2606 149 0.1930 0.2422 REMARK 3 5 4.4536 - 4.1353 1.00 2609 141 0.1923 0.1934 REMARK 3 6 4.1353 - 3.8920 1.00 2602 143 0.2148 0.2448 REMARK 3 7 3.8920 - 3.6975 1.00 2579 150 0.2340 0.3271 REMARK 3 8 3.6975 - 3.5368 1.00 2585 147 0.2332 0.2445 REMARK 3 9 3.5368 - 3.4009 1.00 2604 126 0.2392 0.2510 REMARK 3 10 3.4009 - 3.2837 1.00 2606 149 0.2539 0.2973 REMARK 3 11 3.2837 - 3.1811 0.99 2568 111 0.2737 0.2607 REMARK 3 12 3.1811 - 3.0903 0.97 2553 126 0.3008 0.3126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5774 REMARK 3 ANGLE : 1.112 7915 REMARK 3 CHIRALITY : 0.071 913 REMARK 3 PLANARITY : 0.008 924 REMARK 3 DIHEDRAL : 16.971 2187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9-6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LIQUED NITROGEN REMARK 200 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32918 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 100 MM MES, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 146.33250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.48511 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.83233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 146.33250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 84.48511 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.83233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 146.33250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 84.48511 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.83233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 146.33250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 84.48511 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.83233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 146.33250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 84.48511 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.83233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 146.33250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 84.48511 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.83233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 168.97022 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 73.66467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 168.97022 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 73.66467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 168.97022 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 73.66467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 168.97022 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.66467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 168.97022 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 73.66467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 168.97022 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 73.66467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 258 REMARK 465 HIS A 259 REMARK 465 GLY A 260 REMARK 465 CYS A 261 REMARK 465 PRO A 262 REMARK 465 ASP A 263 REMARK 465 ALA A 264 REMARK 465 PRO A 265 REMARK 465 ALA A 266 REMARK 465 ASN A 594 REMARK 465 PHE A 595 REMARK 465 LYS A 596 REMARK 465 GLY A 597 REMARK 465 LYS A 598 REMARK 465 GLU A 599 REMARK 465 ASP A 600 REMARK 465 GLU A 647 REMARK 465 SER A 648 REMARK 465 GLU A 649 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 303 OD2 ASP A 335 2.01 REMARK 500 O ILE A 726 ND1 HIS A 730 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 504 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 DC P 4 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG P 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT P 11 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA P 12 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DA P 12 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DA P 12 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG T 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG T 11 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 501 -0.93 78.75 REMARK 500 GLN A 509 -87.13 -125.09 REMARK 500 VAL A 546 -53.43 -128.04 REMARK 500 ASP A 663 18.70 58.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XVK RELATED DB: PDB REMARK 900 RELATED ID: 4XVL RELATED DB: PDB REMARK 900 RELATED ID: 4XVM RELATED DB: PDB DBREF 4XVI A 194 859 UNP Q7Z5Q5 DPOLN_HUMAN 194 859 DBREF 4XVI P 1 14 PDB 4XVI 4XVI 1 14 DBREF 4XVI T 1 11 PDB 4XVI 4XVI 1 11 SEQRES 1 A 666 LYS LYS HIS PHE CYS ASP ILE ARG HIS LEU ASP ASP TRP SEQRES 2 A 666 ALA LYS SER GLN LEU ILE GLU MET LEU LYS GLN ALA ALA SEQRES 3 A 666 ALA LEU VAL ILE THR VAL MET TYR THR ASP GLY SER THR SEQRES 4 A 666 GLN LEU GLY ALA ASP GLN THR PRO VAL SER SER VAL ARG SEQRES 5 A 666 GLY ILE VAL VAL LEU VAL LYS ARG GLN ALA GLU GLY GLY SEQRES 6 A 666 HIS GLY CYS PRO ASP ALA PRO ALA CYS GLY PRO VAL LEU SEQRES 7 A 666 GLU GLY PHE VAL SER ASP ASP PRO CYS ILE TYR ILE GLN SEQRES 8 A 666 ILE GLU HIS SER ALA ILE TRP ASP GLN GLU GLN GLU ALA SEQRES 9 A 666 HIS GLN GLN PHE ALA ARG ASN VAL LEU PHE GLN THR MET SEQRES 10 A 666 LYS CYS LYS CYS PRO VAL ILE CYS PHE ASN ALA LYS ASP SEQRES 11 A 666 PHE VAL ARG ILE VAL LEU GLN PHE PHE GLY ASN ASP GLY SEQRES 12 A 666 SER TRP LYS HIS VAL ALA ASP PHE ILE GLY LEU ASP PRO SEQRES 13 A 666 ARG ILE ALA ALA TRP LEU ILE ASP PRO SER ASP ALA THR SEQRES 14 A 666 PRO SER PHE GLU ASP LEU VAL GLU LYS TYR CYS GLU LYS SEQRES 15 A 666 SER ILE THR VAL LYS VAL ASN SER THR TYR GLY ASN SER SEQRES 16 A 666 SER ARG ASN ILE VAL ASN GLN ASN VAL ARG GLU ASN LEU SEQRES 17 A 666 LYS THR LEU TYR ARG LEU THR MET ASP LEU CYS SER LYS SEQRES 18 A 666 LEU LYS ASP TYR GLY LEU TRP GLN LEU PHE ARG THR LEU SEQRES 19 A 666 GLU LEU PRO LEU ILE PRO ILE LEU ALA VAL MET GLU SER SEQRES 20 A 666 HIS ALA ILE GLN VAL ASN LYS GLU GLU MET GLU LYS THR SEQRES 21 A 666 SER ALA LEU LEU GLY ALA ARG LEU LYS GLU LEU GLU GLN SEQRES 22 A 666 GLU ALA HIS PHE VAL ALA GLY GLU ARG PHE LEU ILE THR SEQRES 23 A 666 SER ASN ASN GLN LEU ARG GLU ILE LEU PHE GLY LYS LEU SEQRES 24 A 666 LYS LEU HIS LEU LEU SER GLN ARG ASN SER LEU PRO ARG SEQRES 25 A 666 THR GLY LEU GLN LYS TYR PRO SER THR SER GLU ALA VAL SEQRES 26 A 666 LEU ASN ALA LEU ARG ASP LEU HIS PRO LEU PRO LYS ILE SEQRES 27 A 666 ILE LEU GLU TYR ARG GLN VAL HIS LYS ILE LYS SER THR SEQRES 28 A 666 PHE VAL ASP GLY LEU LEU ALA CYS MET LYS LYS GLY SER SEQRES 29 A 666 ILE SER SER THR TRP ASN GLN THR GLY THR VAL THR GLY SEQRES 30 A 666 ARG LEU SER ALA LYS HIS PRO ASN ILE GLN GLY ILE SER SEQRES 31 A 666 LYS HIS PRO ILE GLN ILE THR THR PRO LYS ASN PHE LYS SEQRES 32 A 666 GLY LYS GLU ASP LYS ILE LEU THR ILE SER PRO ARG ALA SEQRES 33 A 666 MET PHE VAL SER SER LYS GLY HIS THR PHE LEU ALA ALA SEQRES 34 A 666 ASP PHE SER GLN ILE GLU LEU ARG ILE LEU THR HIS LEU SEQRES 35 A 666 SER GLY ASP PRO GLU LEU LEU LYS LEU PHE GLN GLU SER SEQRES 36 A 666 GLU ARG ASP ASP VAL PHE SER THR LEU THR SER GLN TRP SEQRES 37 A 666 LYS ASP VAL PRO VAL GLU GLN VAL THR HIS ALA ASP ARG SEQRES 38 A 666 GLU GLN THR LYS LYS VAL VAL TYR ALA VAL VAL TYR GLY SEQRES 39 A 666 ALA GLY LYS GLU ARG LEU ALA ALA CYS LEU GLY VAL PRO SEQRES 40 A 666 ILE GLN GLU ALA ALA GLN PHE LEU GLU SER PHE LEU GLN SEQRES 41 A 666 LYS TYR LYS LYS ILE LYS ASP PHE ALA ARG ALA ALA ILE SEQRES 42 A 666 ALA GLN CYS HIS GLN THR GLY CYS VAL VAL SER ILE MET SEQRES 43 A 666 GLY ARG ARG ARG PRO LEU PRO ARG ILE HIS ALA HIS ASP SEQRES 44 A 666 GLN GLN LEU ARG ALA GLN ALA GLU ARG GLN ALA VAL ASN SEQRES 45 A 666 PHE VAL VAL GLN GLY SER ALA ALA ASP LEU CYS LYS LEU SEQRES 46 A 666 ALA MET ILE HIS VAL PHE THR ALA VAL ALA ALA SER HIS SEQRES 47 A 666 THR LEU THR ALA ARG LEU VAL ALA GLN ILE HIS ASP GLU SEQRES 48 A 666 LEU LEU PHE GLU VAL GLU ASP PRO GLN ILE PRO GLU CYS SEQRES 49 A 666 ALA ALA LEU VAL ARG ARG THR MET GLU SER LEU GLU GLN SEQRES 50 A 666 VAL GLN ALA LEU GLU LEU GLN LEU GLN VAL PRO LEU LYS SEQRES 51 A 666 VAL SER LEU SER ALA GLY ARG SER TRP GLY HIS LEU VAL SEQRES 52 A 666 PRO LEU GLN SEQRES 1 P 14 DA DC DT DC DT DG DA DC DG DC DT DA DG SEQRES 2 P 14 DG SEQRES 1 T 11 DC DC DT DA DG DC DG DT DC DA DG HELIX 1 AA1 ASP A 204 ALA A 218 1 15 HELIX 2 AA2 ASP A 292 CYS A 312 1 21 HELIX 3 AA3 ASN A 320 GLY A 333 1 14 HELIX 4 AA4 SER A 337 VAL A 341 5 5 HELIX 5 AA5 ASP A 348 ASP A 357 1 10 HELIX 6 AA6 SER A 364 CYS A 373 1 10 HELIX 7 AA7 SER A 389 TYR A 418 1 30 HELIX 8 AA8 LEU A 420 LEU A 427 1 8 HELIX 9 AA9 PRO A 430 SER A 440 1 11 HELIX 10 AB1 ASN A 446 GLY A 473 1 28 HELIX 11 AB2 SER A 480 GLY A 490 1 11 HELIX 12 AB3 SER A 515 LEU A 522 1 8 HELIX 13 AB4 PRO A 527 VAL A 546 1 20 HELIX 14 AB5 VAL A 546 ALA A 551 1 6 HELIX 15 AB6 PRO A 607 PHE A 611 5 5 HELIX 16 AB7 GLN A 626 GLY A 637 1 12 HELIX 17 AB8 ASP A 638 PHE A 645 1 8 HELIX 18 AB9 ASP A 652 ASP A 663 1 12 HELIX 19 AC1 THR A 670 TYR A 686 1 17 HELIX 20 AC2 LYS A 690 LEU A 697 1 8 HELIX 21 AC3 PRO A 700 TYR A 715 1 16 HELIX 22 AC4 LYS A 716 GLY A 733 1 18 HELIX 23 AC5 PRO A 746 ALA A 750 5 5 HELIX 24 AC6 ASP A 752 ALA A 789 1 38 HELIX 25 AC7 GLN A 813 SER A 827 1 15 SHEET 1 AA1 6 PHE A 197 ASP A 199 0 SHEET 2 AA1 6 CYS A 280 GLN A 284 1 O TYR A 282 N CYS A 198 SHEET 3 AA1 6 VAL A 244 LYS A 252 -1 N VAL A 249 O ILE A 281 SHEET 4 AA1 6 ALA A 220 TYR A 227 -1 N VAL A 222 O LEU A 250 SHEET 5 AA1 6 VAL A 316 CYS A 318 1 O ILE A 317 N ILE A 223 SHEET 6 AA1 6 GLY A 346 LEU A 347 1 O LEU A 347 N VAL A 316 SHEET 1 AA2 2 ILE A 443 GLN A 444 0 SHEET 2 AA2 2 SER A 557 ILE A 558 -1 O ILE A 558 N ILE A 443 SHEET 1 AA3 2 THR A 561 ASN A 563 0 SHEET 2 AA3 2 SER A 573 LYS A 575 -1 O SER A 573 N ASN A 563 SHEET 1 AA4 2 ILE A 587 THR A 590 0 SHEET 2 AA4 2 ILE A 602 ILE A 605 -1 O LEU A 603 N ILE A 589 SHEET 1 AA5 5 ARG A 796 ILE A 801 0 SHEET 2 AA5 5 GLU A 804 GLU A 810 -1 O GLU A 804 N ILE A 801 SHEET 3 AA5 5 HIS A 617 PHE A 624 -1 N ALA A 622 O LEU A 805 SHEET 4 AA5 5 VAL A 844 GLY A 849 -1 O SER A 845 N ASP A 623 SHEET 5 AA5 5 VAL A 856 PRO A 857 -1 O VAL A 856 N ALA A 848 SHEET 1 AA6 2 CYS A 734 VAL A 736 0 SHEET 2 AA6 2 ARG A 742 PRO A 744 -1 O ARG A 743 N VAL A 735 SHEET 1 AA7 2 GLN A 830 VAL A 831 0 SHEET 2 AA7 2 LEU A 836 GLN A 837 -1 O LEU A 836 N VAL A 831 CISPEP 1 ASP A 229 GLY A 230 0 -19.46 CISPEP 2 GLY A 235 ALA A 236 0 1.36 CISPEP 3 ASP A 277 ASP A 278 0 -5.74 CISPEP 4 GLU A 374 LYS A 375 0 -5.47 CISPEP 5 HIS A 576 PRO A 577 0 13.60 CISPEP 6 LYS A 615 GLY A 616 0 1.43 CISPEP 7 GLY A 687 ALA A 688 0 -12.69 CISPEP 8 GLN A 832 ALA A 833 0 2.43 CISPEP 9 ALA A 833 LEU A 834 0 14.76 CRYST1 292.665 292.665 110.497 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003417 0.001973 0.000000 0.00000 SCALE2 0.000000 0.003945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009050 0.00000