data_4Y3I # _entry.id 4Y3I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.319 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4Y3I WWPDB D_1000206701 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Deinococcus radiodurans BphP photosensory module with different point mutant with dose in mind for correlated spectroscopic data' 4Q0J unspecified PDB 'PAS-GAF fragment from Deinococcus radiodurans BphP, high-dose (460-520 KGy) collection' 4Y5F unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4Y3I _pdbx_database_status.recvd_initial_deposition_date 2015-02-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, F.' 1 'Burgie, E.S.' 2 'Yu, T.' 3 'Heroux, A.' 4 'Schatz, G.C.' 5 'Vierstra, R.D.' 6 'Orville, A.M.' 7 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 137 _citation.language ? _citation.page_first 2792 _citation.page_last 2795 _citation.title 'X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/ja510923m _citation.pdbx_database_id_PubMed 25650486 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, F.' 1 ? primary 'Burgie, E.S.' 2 ? primary 'Yu, T.' 3 ? primary 'Heroux, A.' 4 ? primary 'Schatz, G.C.' 5 ? primary 'Vierstra, R.D.' 6 ? primary 'Orville, A.M.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 116.22 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4Y3I _cell.details ? _cell.formula_units_Z ? _cell.length_a 89.481 _cell.length_a_esd ? _cell.length_b 51.917 _cell.length_b_esd ? _cell.length_c 80.339 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Bacteriophytochrome 34463.324 1 2.7.13.3 Y307S 'PAS-GAF fragment (UNP residues 4-321)' ? 2 non-polymer syn ;3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid ; 585.670 1 ? ? ? ? 3 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Phytochrome-like protein, bilin chromophore' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWP ALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQT VRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTN APTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH ; _entity_poly.pdbx_seq_one_letter_code_can ;DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWP ALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQT VRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTN APTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 PRO n 1 3 LEU n 1 4 PRO n 1 5 PHE n 1 6 PHE n 1 7 PRO n 1 8 PRO n 1 9 LEU n 1 10 TYR n 1 11 LEU n 1 12 GLY n 1 13 GLY n 1 14 PRO n 1 15 GLU n 1 16 ILE n 1 17 THR n 1 18 THR n 1 19 GLU n 1 20 ASN n 1 21 CYS n 1 22 GLU n 1 23 ARG n 1 24 GLU n 1 25 PRO n 1 26 ILE n 1 27 HIS n 1 28 ILE n 1 29 PRO n 1 30 GLY n 1 31 SER n 1 32 ILE n 1 33 GLN n 1 34 PRO n 1 35 HIS n 1 36 GLY n 1 37 ALA n 1 38 LEU n 1 39 LEU n 1 40 THR n 1 41 ALA n 1 42 ASP n 1 43 GLY n 1 44 HIS n 1 45 SER n 1 46 GLY n 1 47 GLU n 1 48 VAL n 1 49 LEU n 1 50 GLN n 1 51 MET n 1 52 SER n 1 53 LEU n 1 54 ASN n 1 55 ALA n 1 56 ALA n 1 57 THR n 1 58 PHE n 1 59 LEU n 1 60 GLY n 1 61 GLN n 1 62 GLU n 1 63 PRO n 1 64 THR n 1 65 VAL n 1 66 LEU n 1 67 ARG n 1 68 GLY n 1 69 GLN n 1 70 THR n 1 71 LEU n 1 72 ALA n 1 73 ALA n 1 74 LEU n 1 75 LEU n 1 76 PRO n 1 77 GLU n 1 78 GLN n 1 79 TRP n 1 80 PRO n 1 81 ALA n 1 82 LEU n 1 83 GLN n 1 84 ALA n 1 85 ALA n 1 86 LEU n 1 87 PRO n 1 88 PRO n 1 89 GLY n 1 90 CYS n 1 91 PRO n 1 92 ASP n 1 93 ALA n 1 94 LEU n 1 95 GLN n 1 96 TYR n 1 97 ARG n 1 98 ALA n 1 99 THR n 1 100 LEU n 1 101 ASP n 1 102 TRP n 1 103 PRO n 1 104 ALA n 1 105 ALA n 1 106 GLY n 1 107 HIS n 1 108 LEU n 1 109 SER n 1 110 LEU n 1 111 THR n 1 112 VAL n 1 113 HIS n 1 114 ARG n 1 115 VAL n 1 116 GLY n 1 117 GLU n 1 118 LEU n 1 119 LEU n 1 120 ILE n 1 121 LEU n 1 122 GLU n 1 123 PHE n 1 124 GLU n 1 125 PRO n 1 126 THR n 1 127 GLU n 1 128 ALA n 1 129 TRP n 1 130 ASP n 1 131 SER n 1 132 THR n 1 133 GLY n 1 134 PRO n 1 135 HIS n 1 136 ALA n 1 137 LEU n 1 138 ARG n 1 139 ASN n 1 140 ALA n 1 141 MET n 1 142 PHE n 1 143 ALA n 1 144 LEU n 1 145 GLU n 1 146 SER n 1 147 ALA n 1 148 PRO n 1 149 ASN n 1 150 LEU n 1 151 ARG n 1 152 ALA n 1 153 LEU n 1 154 ALA n 1 155 GLU n 1 156 VAL n 1 157 ALA n 1 158 THR n 1 159 GLN n 1 160 THR n 1 161 VAL n 1 162 ARG n 1 163 GLU n 1 164 LEU n 1 165 THR n 1 166 GLY n 1 167 PHE n 1 168 ASP n 1 169 ARG n 1 170 VAL n 1 171 MET n 1 172 LEU n 1 173 TYR n 1 174 LYS n 1 175 PHE n 1 176 ALA n 1 177 PRO n 1 178 ASP n 1 179 ALA n 1 180 THR n 1 181 GLY n 1 182 GLU n 1 183 VAL n 1 184 ILE n 1 185 ALA n 1 186 GLU n 1 187 ALA n 1 188 ARG n 1 189 ARG n 1 190 GLU n 1 191 GLY n 1 192 LEU n 1 193 HIS n 1 194 ALA n 1 195 PHE n 1 196 LEU n 1 197 GLY n 1 198 HIS n 1 199 ARG n 1 200 PHE n 1 201 PRO n 1 202 ALA n 1 203 SER n 1 204 ASP n 1 205 ILE n 1 206 PRO n 1 207 ALA n 1 208 GLN n 1 209 ALA n 1 210 ARG n 1 211 ALA n 1 212 LEU n 1 213 TYR n 1 214 THR n 1 215 ARG n 1 216 HIS n 1 217 LEU n 1 218 LEU n 1 219 ARG n 1 220 LEU n 1 221 THR n 1 222 ALA n 1 223 ASP n 1 224 THR n 1 225 ARG n 1 226 ALA n 1 227 ALA n 1 228 ALA n 1 229 VAL n 1 230 PRO n 1 231 LEU n 1 232 ASP n 1 233 PRO n 1 234 VAL n 1 235 LEU n 1 236 ASN n 1 237 PRO n 1 238 GLN n 1 239 THR n 1 240 ASN n 1 241 ALA n 1 242 PRO n 1 243 THR n 1 244 PRO n 1 245 LEU n 1 246 GLY n 1 247 GLY n 1 248 ALA n 1 249 VAL n 1 250 LEU n 1 251 ARG n 1 252 ALA n 1 253 THR n 1 254 SER n 1 255 PRO n 1 256 MET n 1 257 HIS n 1 258 MET n 1 259 GLN n 1 260 TYR n 1 261 LEU n 1 262 ARG n 1 263 ASN n 1 264 MET n 1 265 GLY n 1 266 VAL n 1 267 GLY n 1 268 SER n 1 269 SER n 1 270 LEU n 1 271 SER n 1 272 VAL n 1 273 SER n 1 274 VAL n 1 275 VAL n 1 276 VAL n 1 277 GLY n 1 278 GLY n 1 279 GLN n 1 280 LEU n 1 281 TRP n 1 282 GLY n 1 283 LEU n 1 284 ILE n 1 285 ALA n 1 286 CYS n 1 287 HIS n 1 288 HIS n 1 289 GLN n 1 290 THR n 1 291 PRO n 1 292 TYR n 1 293 VAL n 1 294 LEU n 1 295 PRO n 1 296 PRO n 1 297 ASP n 1 298 LEU n 1 299 ARG n 1 300 THR n 1 301 THR n 1 302 LEU n 1 303 GLU n 1 304 SER n 1 305 LEU n 1 306 GLY n 1 307 ARG n 1 308 LEU n 1 309 LEU n 1 310 SER n 1 311 LEU n 1 312 GLN n 1 313 VAL n 1 314 GLN n 1 315 VAL n 1 316 LYS n 1 317 GLU n 1 318 ALA n 1 319 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 319 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'bphP, DR_A0050' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243230 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BPHY_DEIRA _struct_ref.pdbx_db_accession Q9RZA4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWP ALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQT VRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTN APTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEA ; _struct_ref.pdbx_align_begin 4 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4Y3I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 318 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9RZA4 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 321 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 321 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4Y3I SER A 304 ? UNP Q9RZA4 TYR 307 'engineered mutation' 307 1 1 4Y3I HIS A 319 ? UNP Q9RZA4 ? ? 'expression tag' 322 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LBV non-polymer . ;3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid ; '2(R),3(E)- PHYTOCHROMOBILIN' 'C33 H37 N4 O6 1' 585.670 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4Y3I _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '19% isopropanol, 19% PEG3350, 5% glycerol, 100 mM citric acid/NaOH' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'multi-crystals for low dose' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-08-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4Y3I _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.69 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 34408 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.694 _reflns_shell.d_res_low 1.738 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 80.82 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.283 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.59 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.01 _refine.aniso_B[2][2] 0.96 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.24 _refine.B_iso_max ? _refine.B_iso_mean 21.229 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4Y3I _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.69 _refine.ls_d_res_low 50.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 34408 _refine.ls_number_reflns_R_free 1809 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.91 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19206 _refine.ls_R_factor_R_free 0.22614 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.19021 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 209C' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.111 _refine.pdbx_overall_ESU_R_Free 0.110 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.153 _refine.overall_SU_ML 0.072 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 2403 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 2565 _refine_hist.d_res_high 1.69 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.022 0.019 2653 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 2.647 0.020 5 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.363 1.999 3657 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 10.991 3.000 11 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.542 5.000 336 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 39.149 23.717 113 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.161 15.000 407 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 18.918 15.000 19 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.188 0.200 425 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.015 0.022 2056 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.017 0.020 2 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.339 2.037 1298 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.455 3.048 1627 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.740 2.208 1355 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.737 2.208 1354 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.921 3.245 2024 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.868 17.304 4024 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.868 17.305 4025 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.694 _refine_ls_shell.d_res_low 1.738 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 109 _refine_ls_shell.number_reflns_R_work 2108 _refine_ls_shell.percent_reflns_obs 80.82 _refine_ls_shell.percent_reflns_R_free 5 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.222 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4Y3I _struct.title 'PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, low dose' _struct.pdbx_descriptor 'bilin chromophore (E.C.2.7.13.3)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4Y3I _struct_keywords.text 'low-dose, spectroscopy, bilin chromophore, phythochrome, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 8 ? GLY A 12 ? PRO A 11 GLY A 15 5 ? 5 HELX_P HELX_P2 AA2 ASN A 20 ? GLU A 24 ? ASN A 23 GLU A 27 5 ? 5 HELX_P HELX_P3 AA3 ASN A 54 ? GLY A 60 ? ASN A 57 GLY A 63 1 ? 7 HELX_P HELX_P4 AA4 GLU A 62 ? ARG A 67 ? GLU A 65 ARG A 70 1 ? 6 HELX_P HELX_P5 AA5 THR A 70 ? LEU A 75 ? THR A 73 LEU A 78 1 ? 6 HELX_P HELX_P6 AA6 GLN A 78 ? LEU A 86 ? GLN A 81 LEU A 89 1 ? 9 HELX_P HELX_P7 AA7 GLU A 127 ? SER A 131 ? GLU A 130 SER A 134 5 ? 5 HELX_P HELX_P8 AA8 PRO A 134 ? ALA A 147 ? PRO A 137 ALA A 150 1 ? 14 HELX_P HELX_P9 AA9 ASN A 149 ? GLY A 166 ? ASN A 152 GLY A 169 1 ? 18 HELX_P HELX_P10 AB1 PRO A 201 ? ILE A 205 ? PRO A 204 ILE A 208 5 ? 5 HELX_P HELX_P11 AB2 PRO A 206 ? HIS A 216 ? PRO A 209 HIS A 219 1 ? 11 HELX_P HELX_P12 AB3 SER A 254 ? MET A 264 ? SER A 257 MET A 267 1 ? 11 HELX_P HELX_P13 AB4 PRO A 295 ? ALA A 318 ? PRO A 298 ALA A 321 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 21 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id LBV _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id CBA _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 24 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LBV _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.660 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 232 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 235 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 233 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 236 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.42 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 31 ? ILE A 32 ? SER A 34 ILE A 35 AA1 2 VAL A 229 ? ASP A 232 ? VAL A 232 ASP A 235 AA1 3 VAL A 48 ? SER A 52 ? VAL A 51 SER A 55 AA1 4 ALA A 37 ? ASP A 42 ? ALA A 40 ASP A 45 AA1 5 LEU A 118 ? THR A 126 ? LEU A 121 THR A 129 AA1 6 HIS A 107 ? VAL A 115 ? HIS A 110 VAL A 118 AA1 7 TYR A 96 ? ASP A 101 ? TYR A 99 ASP A 104 AA2 1 ARG A 199 ? PHE A 200 ? ARG A 202 PHE A 203 AA2 2 GLY A 181 ? ARG A 188 ? GLY A 184 ARG A 191 AA2 3 ARG A 169 ? PHE A 175 ? ARG A 172 PHE A 178 AA2 4 GLN A 279 ? HIS A 288 ? GLN A 282 HIS A 291 AA2 5 SER A 268 ? VAL A 276 ? SER A 271 VAL A 279 AA2 6 LEU A 218 ? THR A 221 ? LEU A 221 THR A 224 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 32 ? N ILE A 35 O VAL A 229 ? O VAL A 232 AA1 2 3 O ASP A 232 ? O ASP A 235 N MET A 51 ? N MET A 54 AA1 3 4 O SER A 52 ? O SER A 55 N LEU A 38 ? N LEU A 41 AA1 4 5 N LEU A 39 ? N LEU A 42 O LEU A 121 ? O LEU A 124 AA1 5 6 O GLU A 124 ? O GLU A 127 N SER A 109 ? N SER A 112 AA1 6 7 O LEU A 110 ? O LEU A 113 N ALA A 98 ? N ALA A 101 AA2 1 2 O PHE A 200 ? O PHE A 203 N GLY A 181 ? N GLY A 184 AA2 2 3 O ALA A 187 ? O ALA A 190 N VAL A 170 ? N VAL A 173 AA2 3 4 N MET A 171 ? N MET A 174 O ALA A 285 ? O ALA A 288 AA2 4 5 O CYS A 286 ? O CYS A 289 N LEU A 270 ? N LEU A 273 AA2 5 6 O SER A 269 ? O SER A 272 N THR A 221 ? N THR A 224 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id LBV _struct_site.pdbx_auth_seq_id 401 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 25 _struct_site.details 'binding site for residue LBV A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 CYS A 21 ? CYS A 24 . ? 1_555 ? 2 AC1 25 MET A 171 ? MET A 174 . ? 1_555 ? 3 AC1 25 TYR A 173 ? TYR A 176 . ? 1_555 ? 4 AC1 25 PHE A 195 ? PHE A 198 . ? 1_555 ? 5 AC1 25 PHE A 200 ? PHE A 203 . ? 1_555 ? 6 AC1 25 SER A 203 ? SER A 206 . ? 1_555 ? 7 AC1 25 ASP A 204 ? ASP A 207 . ? 1_555 ? 8 AC1 25 ILE A 205 ? ILE A 208 . ? 1_555 ? 9 AC1 25 PRO A 206 ? PRO A 209 . ? 1_555 ? 10 AC1 25 TYR A 213 ? TYR A 216 . ? 1_555 ? 11 AC1 25 ARG A 251 ? ARG A 254 . ? 1_555 ? 12 AC1 25 THR A 253 ? THR A 256 . ? 1_555 ? 13 AC1 25 SER A 254 ? SER A 257 . ? 1_555 ? 14 AC1 25 MET A 256 ? MET A 259 . ? 1_555 ? 15 AC1 25 HIS A 257 ? HIS A 260 . ? 1_555 ? 16 AC1 25 TYR A 260 ? TYR A 263 . ? 1_555 ? 17 AC1 25 MET A 264 ? MET A 267 . ? 1_555 ? 18 AC1 25 SER A 269 ? SER A 272 . ? 1_555 ? 19 AC1 25 SER A 271 ? SER A 274 . ? 1_555 ? 20 AC1 25 HIS A 287 ? HIS A 290 . ? 1_555 ? 21 AC1 25 HOH C . ? HOH A 535 . ? 1_555 ? 22 AC1 25 HOH C . ? HOH A 541 . ? 1_555 ? 23 AC1 25 HOH C . ? HOH A 545 . ? 1_555 ? 24 AC1 25 HOH C . ? HOH A 550 . ? 1_555 ? 25 AC1 25 HOH C . ? HOH A 551 . ? 1_555 ? # _atom_sites.entry_id 4Y3I _atom_sites.fract_transf_matrix[1][1] 0.011176 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005505 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019262 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013876 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 4 4 ASP ASP A . n A 1 2 PRO 2 5 5 PRO PRO A . n A 1 3 LEU 3 6 6 LEU LEU A . n A 1 4 PRO 4 7 7 PRO PRO A . n A 1 5 PHE 5 8 8 PHE PHE A . n A 1 6 PHE 6 9 9 PHE PHE A . n A 1 7 PRO 7 10 10 PRO PRO A . n A 1 8 PRO 8 11 11 PRO PRO A . n A 1 9 LEU 9 12 12 LEU LEU A . n A 1 10 TYR 10 13 13 TYR TYR A . n A 1 11 LEU 11 14 14 LEU LEU A . n A 1 12 GLY 12 15 15 GLY GLY A . n A 1 13 GLY 13 16 16 GLY GLY A . n A 1 14 PRO 14 17 17 PRO PRO A . n A 1 15 GLU 15 18 18 GLU GLU A . n A 1 16 ILE 16 19 19 ILE ILE A . n A 1 17 THR 17 20 20 THR THR A . n A 1 18 THR 18 21 21 THR THR A . n A 1 19 GLU 19 22 22 GLU GLU A . n A 1 20 ASN 20 23 23 ASN ASN A . n A 1 21 CYS 21 24 24 CYS CYS A . n A 1 22 GLU 22 25 25 GLU GLU A . n A 1 23 ARG 23 26 26 ARG ARG A . n A 1 24 GLU 24 27 27 GLU GLU A . n A 1 25 PRO 25 28 28 PRO PRO A . n A 1 26 ILE 26 29 29 ILE ILE A . n A 1 27 HIS 27 30 30 HIS HIS A . n A 1 28 ILE 28 31 31 ILE ILE A . n A 1 29 PRO 29 32 32 PRO PRO A . n A 1 30 GLY 30 33 33 GLY GLY A . n A 1 31 SER 31 34 34 SER SER A . n A 1 32 ILE 32 35 35 ILE ILE A . n A 1 33 GLN 33 36 36 GLN GLN A . n A 1 34 PRO 34 37 37 PRO PRO A . n A 1 35 HIS 35 38 38 HIS HIS A . n A 1 36 GLY 36 39 39 GLY GLY A . n A 1 37 ALA 37 40 40 ALA ALA A . n A 1 38 LEU 38 41 41 LEU LEU A . n A 1 39 LEU 39 42 42 LEU LEU A . n A 1 40 THR 40 43 43 THR THR A . n A 1 41 ALA 41 44 44 ALA ALA A . n A 1 42 ASP 42 45 45 ASP ASP A . n A 1 43 GLY 43 46 46 GLY GLY A . n A 1 44 HIS 44 47 47 HIS HIS A . n A 1 45 SER 45 48 48 SER SER A . n A 1 46 GLY 46 49 49 GLY GLY A . n A 1 47 GLU 47 50 50 GLU GLU A . n A 1 48 VAL 48 51 51 VAL VAL A . n A 1 49 LEU 49 52 52 LEU LEU A . n A 1 50 GLN 50 53 53 GLN GLN A . n A 1 51 MET 51 54 54 MET MET A . n A 1 52 SER 52 55 55 SER SER A . n A 1 53 LEU 53 56 56 LEU LEU A . n A 1 54 ASN 54 57 57 ASN ASN A . n A 1 55 ALA 55 58 58 ALA ALA A . n A 1 56 ALA 56 59 59 ALA ALA A . n A 1 57 THR 57 60 60 THR THR A . n A 1 58 PHE 58 61 61 PHE PHE A . n A 1 59 LEU 59 62 62 LEU LEU A . n A 1 60 GLY 60 63 63 GLY GLY A . n A 1 61 GLN 61 64 64 GLN GLN A . n A 1 62 GLU 62 65 65 GLU GLU A . n A 1 63 PRO 63 66 66 PRO PRO A . n A 1 64 THR 64 67 67 THR THR A . n A 1 65 VAL 65 68 68 VAL VAL A . n A 1 66 LEU 66 69 69 LEU LEU A . n A 1 67 ARG 67 70 70 ARG ARG A . n A 1 68 GLY 68 71 71 GLY GLY A . n A 1 69 GLN 69 72 72 GLN GLN A . n A 1 70 THR 70 73 73 THR THR A . n A 1 71 LEU 71 74 74 LEU LEU A . n A 1 72 ALA 72 75 75 ALA ALA A . n A 1 73 ALA 73 76 76 ALA ALA A . n A 1 74 LEU 74 77 77 LEU LEU A . n A 1 75 LEU 75 78 78 LEU LEU A . n A 1 76 PRO 76 79 79 PRO PRO A . n A 1 77 GLU 77 80 80 GLU GLU A . n A 1 78 GLN 78 81 81 GLN GLN A . n A 1 79 TRP 79 82 82 TRP TRP A . n A 1 80 PRO 80 83 83 PRO PRO A . n A 1 81 ALA 81 84 84 ALA ALA A . n A 1 82 LEU 82 85 85 LEU LEU A . n A 1 83 GLN 83 86 86 GLN GLN A . n A 1 84 ALA 84 87 87 ALA ALA A . n A 1 85 ALA 85 88 88 ALA ALA A . n A 1 86 LEU 86 89 89 LEU LEU A . n A 1 87 PRO 87 90 90 PRO PRO A . n A 1 88 PRO 88 91 91 PRO PRO A . n A 1 89 GLY 89 92 92 GLY GLY A . n A 1 90 CYS 90 93 93 CYS CYS A . n A 1 91 PRO 91 94 94 PRO PRO A . n A 1 92 ASP 92 95 95 ASP ASP A . n A 1 93 ALA 93 96 96 ALA ALA A . n A 1 94 LEU 94 97 97 LEU LEU A . n A 1 95 GLN 95 98 98 GLN GLN A . n A 1 96 TYR 96 99 99 TYR TYR A . n A 1 97 ARG 97 100 100 ARG ARG A . n A 1 98 ALA 98 101 101 ALA ALA A . n A 1 99 THR 99 102 102 THR THR A . n A 1 100 LEU 100 103 103 LEU LEU A . n A 1 101 ASP 101 104 104 ASP ASP A . n A 1 102 TRP 102 105 105 TRP TRP A . n A 1 103 PRO 103 106 106 PRO PRO A . n A 1 104 ALA 104 107 107 ALA ALA A . n A 1 105 ALA 105 108 108 ALA ALA A . n A 1 106 GLY 106 109 109 GLY GLY A . n A 1 107 HIS 107 110 110 HIS HIS A . n A 1 108 LEU 108 111 111 LEU LEU A . n A 1 109 SER 109 112 112 SER SER A . n A 1 110 LEU 110 113 113 LEU LEU A . n A 1 111 THR 111 114 114 THR THR A . n A 1 112 VAL 112 115 115 VAL VAL A . n A 1 113 HIS 113 116 116 HIS HIS A . n A 1 114 ARG 114 117 117 ARG ARG A . n A 1 115 VAL 115 118 118 VAL VAL A . n A 1 116 GLY 116 119 119 GLY GLY A . n A 1 117 GLU 117 120 120 GLU GLU A . n A 1 118 LEU 118 121 121 LEU LEU A . n A 1 119 LEU 119 122 122 LEU LEU A . n A 1 120 ILE 120 123 123 ILE ILE A . n A 1 121 LEU 121 124 124 LEU LEU A . n A 1 122 GLU 122 125 125 GLU GLU A . n A 1 123 PHE 123 126 126 PHE PHE A . n A 1 124 GLU 124 127 127 GLU GLU A . n A 1 125 PRO 125 128 128 PRO PRO A . n A 1 126 THR 126 129 129 THR THR A . n A 1 127 GLU 127 130 130 GLU GLU A . n A 1 128 ALA 128 131 131 ALA ALA A . n A 1 129 TRP 129 132 132 TRP TRP A . n A 1 130 ASP 130 133 133 ASP ASP A . n A 1 131 SER 131 134 134 SER SER A . n A 1 132 THR 132 135 135 THR THR A . n A 1 133 GLY 133 136 136 GLY GLY A . n A 1 134 PRO 134 137 137 PRO PRO A . n A 1 135 HIS 135 138 138 HIS HIS A . n A 1 136 ALA 136 139 139 ALA ALA A . n A 1 137 LEU 137 140 140 LEU LEU A . n A 1 138 ARG 138 141 141 ARG ARG A . n A 1 139 ASN 139 142 142 ASN ASN A . n A 1 140 ALA 140 143 143 ALA ALA A . n A 1 141 MET 141 144 144 MET MET A . n A 1 142 PHE 142 145 145 PHE PHE A . n A 1 143 ALA 143 146 146 ALA ALA A . n A 1 144 LEU 144 147 147 LEU LEU A . n A 1 145 GLU 145 148 148 GLU GLU A . n A 1 146 SER 146 149 149 SER SER A . n A 1 147 ALA 147 150 150 ALA ALA A . n A 1 148 PRO 148 151 151 PRO PRO A . n A 1 149 ASN 149 152 152 ASN ASN A . n A 1 150 LEU 150 153 153 LEU LEU A . n A 1 151 ARG 151 154 154 ARG ARG A . n A 1 152 ALA 152 155 155 ALA ALA A . n A 1 153 LEU 153 156 156 LEU LEU A . n A 1 154 ALA 154 157 157 ALA ALA A . n A 1 155 GLU 155 158 158 GLU GLU A . n A 1 156 VAL 156 159 159 VAL VAL A . n A 1 157 ALA 157 160 160 ALA ALA A . n A 1 158 THR 158 161 161 THR THR A . n A 1 159 GLN 159 162 162 GLN GLN A . n A 1 160 THR 160 163 163 THR THR A . n A 1 161 VAL 161 164 164 VAL VAL A . n A 1 162 ARG 162 165 165 ARG ARG A . n A 1 163 GLU 163 166 166 GLU GLU A . n A 1 164 LEU 164 167 167 LEU LEU A . n A 1 165 THR 165 168 168 THR THR A . n A 1 166 GLY 166 169 169 GLY GLY A . n A 1 167 PHE 167 170 170 PHE PHE A . n A 1 168 ASP 168 171 171 ASP ASP A . n A 1 169 ARG 169 172 172 ARG ARG A . n A 1 170 VAL 170 173 173 VAL VAL A . n A 1 171 MET 171 174 174 MET MET A . n A 1 172 LEU 172 175 175 LEU LEU A . n A 1 173 TYR 173 176 176 TYR TYR A . n A 1 174 LYS 174 177 177 LYS LYS A . n A 1 175 PHE 175 178 178 PHE PHE A . n A 1 176 ALA 176 179 179 ALA ALA A . n A 1 177 PRO 177 180 180 PRO PRO A . n A 1 178 ASP 178 181 181 ASP ASP A . n A 1 179 ALA 179 182 182 ALA ALA A . n A 1 180 THR 180 183 183 THR THR A . n A 1 181 GLY 181 184 184 GLY GLY A . n A 1 182 GLU 182 185 185 GLU GLU A . n A 1 183 VAL 183 186 186 VAL VAL A . n A 1 184 ILE 184 187 187 ILE ILE A . n A 1 185 ALA 185 188 188 ALA ALA A . n A 1 186 GLU 186 189 189 GLU GLU A . n A 1 187 ALA 187 190 190 ALA ALA A . n A 1 188 ARG 188 191 191 ARG ARG A . n A 1 189 ARG 189 192 192 ARG ARG A . n A 1 190 GLU 190 193 193 GLU GLU A . n A 1 191 GLY 191 194 194 GLY GLY A . n A 1 192 LEU 192 195 195 LEU LEU A . n A 1 193 HIS 193 196 196 HIS HIS A . n A 1 194 ALA 194 197 197 ALA ALA A . n A 1 195 PHE 195 198 198 PHE PHE A . n A 1 196 LEU 196 199 199 LEU LEU A . n A 1 197 GLY 197 200 200 GLY GLY A . n A 1 198 HIS 198 201 201 HIS HIS A . n A 1 199 ARG 199 202 202 ARG ARG A . n A 1 200 PHE 200 203 203 PHE PHE A . n A 1 201 PRO 201 204 204 PRO PRO A . n A 1 202 ALA 202 205 205 ALA ALA A . n A 1 203 SER 203 206 206 SER SER A . n A 1 204 ASP 204 207 207 ASP ASP A . n A 1 205 ILE 205 208 208 ILE ILE A . n A 1 206 PRO 206 209 209 PRO PRO A . n A 1 207 ALA 207 210 210 ALA ALA A . n A 1 208 GLN 208 211 211 GLN GLN A . n A 1 209 ALA 209 212 212 ALA ALA A . n A 1 210 ARG 210 213 213 ARG ARG A . n A 1 211 ALA 211 214 214 ALA ALA A . n A 1 212 LEU 212 215 215 LEU LEU A . n A 1 213 TYR 213 216 216 TYR TYR A . n A 1 214 THR 214 217 217 THR THR A . n A 1 215 ARG 215 218 218 ARG ARG A . n A 1 216 HIS 216 219 219 HIS HIS A . n A 1 217 LEU 217 220 220 LEU LEU A . n A 1 218 LEU 218 221 221 LEU LEU A . n A 1 219 ARG 219 222 222 ARG ARG A . n A 1 220 LEU 220 223 223 LEU LEU A . n A 1 221 THR 221 224 224 THR THR A . n A 1 222 ALA 222 225 225 ALA ALA A . n A 1 223 ASP 223 226 226 ASP ASP A . n A 1 224 THR 224 227 227 THR THR A . n A 1 225 ARG 225 228 228 ARG ARG A . n A 1 226 ALA 226 229 229 ALA ALA A . n A 1 227 ALA 227 230 230 ALA ALA A . n A 1 228 ALA 228 231 231 ALA ALA A . n A 1 229 VAL 229 232 232 VAL VAL A . n A 1 230 PRO 230 233 233 PRO PRO A . n A 1 231 LEU 231 234 234 LEU LEU A . n A 1 232 ASP 232 235 235 ASP ASP A . n A 1 233 PRO 233 236 236 PRO PRO A . n A 1 234 VAL 234 237 237 VAL VAL A . n A 1 235 LEU 235 238 238 LEU LEU A . n A 1 236 ASN 236 239 239 ASN ASN A . n A 1 237 PRO 237 240 240 PRO PRO A . n A 1 238 GLN 238 241 241 GLN GLN A . n A 1 239 THR 239 242 242 THR THR A . n A 1 240 ASN 240 243 243 ASN ASN A . n A 1 241 ALA 241 244 244 ALA ALA A . n A 1 242 PRO 242 245 245 PRO PRO A . n A 1 243 THR 243 246 246 THR THR A . n A 1 244 PRO 244 247 247 PRO PRO A . n A 1 245 LEU 245 248 248 LEU LEU A . n A 1 246 GLY 246 249 249 GLY GLY A . n A 1 247 GLY 247 250 250 GLY GLY A . n A 1 248 ALA 248 251 251 ALA ALA A . n A 1 249 VAL 249 252 252 VAL VAL A . n A 1 250 LEU 250 253 253 LEU LEU A . n A 1 251 ARG 251 254 254 ARG ARG A . n A 1 252 ALA 252 255 255 ALA ALA A . n A 1 253 THR 253 256 256 THR THR A . n A 1 254 SER 254 257 257 SER SER A . n A 1 255 PRO 255 258 258 PRO PRO A . n A 1 256 MET 256 259 259 MET MET A . n A 1 257 HIS 257 260 260 HIS HIS A . n A 1 258 MET 258 261 261 MET MET A . n A 1 259 GLN 259 262 262 GLN GLN A . n A 1 260 TYR 260 263 263 TYR TYR A . n A 1 261 LEU 261 264 264 LEU LEU A . n A 1 262 ARG 262 265 265 ARG ARG A . n A 1 263 ASN 263 266 266 ASN ASN A . n A 1 264 MET 264 267 267 MET MET A . n A 1 265 GLY 265 268 268 GLY GLY A . n A 1 266 VAL 266 269 269 VAL VAL A . n A 1 267 GLY 267 270 270 GLY GLY A . n A 1 268 SER 268 271 271 SER SER A . n A 1 269 SER 269 272 272 SER SER A . n A 1 270 LEU 270 273 273 LEU LEU A . n A 1 271 SER 271 274 274 SER SER A . n A 1 272 VAL 272 275 275 VAL VAL A . n A 1 273 SER 273 276 276 SER SER A . n A 1 274 VAL 274 277 277 VAL VAL A . n A 1 275 VAL 275 278 278 VAL VAL A . n A 1 276 VAL 276 279 279 VAL VAL A . n A 1 277 GLY 277 280 280 GLY GLY A . n A 1 278 GLY 278 281 281 GLY GLY A . n A 1 279 GLN 279 282 282 GLN GLN A . n A 1 280 LEU 280 283 283 LEU LEU A . n A 1 281 TRP 281 284 284 TRP TRP A . n A 1 282 GLY 282 285 285 GLY GLY A . n A 1 283 LEU 283 286 286 LEU LEU A . n A 1 284 ILE 284 287 287 ILE ILE A . n A 1 285 ALA 285 288 288 ALA ALA A . n A 1 286 CYS 286 289 289 CYS CYS A . n A 1 287 HIS 287 290 290 HIS HIS A . n A 1 288 HIS 288 291 291 HIS HIS A . n A 1 289 GLN 289 292 292 GLN GLN A . n A 1 290 THR 290 293 293 THR THR A . n A 1 291 PRO 291 294 294 PRO PRO A . n A 1 292 TYR 292 295 295 TYR TYR A . n A 1 293 VAL 293 296 296 VAL VAL A . n A 1 294 LEU 294 297 297 LEU LEU A . n A 1 295 PRO 295 298 298 PRO PRO A . n A 1 296 PRO 296 299 299 PRO PRO A . n A 1 297 ASP 297 300 300 ASP ASP A . n A 1 298 LEU 298 301 301 LEU LEU A . n A 1 299 ARG 299 302 302 ARG ARG A . n A 1 300 THR 300 303 303 THR THR A . n A 1 301 THR 301 304 304 THR THR A . n A 1 302 LEU 302 305 305 LEU LEU A . n A 1 303 GLU 303 306 306 GLU GLU A . n A 1 304 SER 304 307 307 SER SER A . n A 1 305 LEU 305 308 308 LEU LEU A . n A 1 306 GLY 306 309 309 GLY GLY A . n A 1 307 ARG 307 310 310 ARG ARG A . n A 1 308 LEU 308 311 311 LEU LEU A . n A 1 309 LEU 309 312 312 LEU LEU A . n A 1 310 SER 310 313 313 SER SER A . n A 1 311 LEU 311 314 314 LEU LEU A . n A 1 312 GLN 312 315 315 GLN GLN A . n A 1 313 VAL 313 316 316 VAL VAL A . n A 1 314 GLN 314 317 317 GLN GLN A . n A 1 315 VAL 315 318 318 VAL VAL A . n A 1 316 LYS 316 319 319 LYS LYS A . n A 1 317 GLU 317 320 320 GLU GLU A . n A 1 318 ALA 318 321 321 ALA ALA A . n A 1 319 HIS 319 322 322 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LBV 1 401 1 LBV LBV A . C 3 HOH 1 501 73 HOH HOH A . C 3 HOH 2 502 60 HOH HOH A . C 3 HOH 3 503 93 HOH HOH A . C 3 HOH 4 504 58 HOH HOH A . C 3 HOH 5 505 98 HOH HOH A . C 3 HOH 6 506 102 HOH HOH A . C 3 HOH 7 507 55 HOH HOH A . C 3 HOH 8 508 69 HOH HOH A . C 3 HOH 9 509 86 HOH HOH A . C 3 HOH 10 510 54 HOH HOH A . C 3 HOH 11 511 12 HOH HOH A . C 3 HOH 12 512 82 HOH HOH A . C 3 HOH 13 513 119 HOH HOH A . C 3 HOH 14 514 71 HOH HOH A . C 3 HOH 15 515 78 HOH HOH A . C 3 HOH 16 516 32 HOH HOH A . C 3 HOH 17 517 74 HOH HOH A . C 3 HOH 18 518 45 HOH HOH A . C 3 HOH 19 519 112 HOH HOH A . C 3 HOH 20 520 46 HOH HOH A . C 3 HOH 21 521 34 HOH HOH A . C 3 HOH 22 522 108 HOH HOH A . C 3 HOH 23 523 20 HOH HOH A . C 3 HOH 24 524 62 HOH HOH A . C 3 HOH 25 525 35 HOH HOH A . C 3 HOH 26 526 84 HOH HOH A . C 3 HOH 27 527 88 HOH HOH A . C 3 HOH 28 528 91 HOH HOH A . C 3 HOH 29 529 33 HOH HOH A . C 3 HOH 30 530 116 HOH HOH A . C 3 HOH 31 531 90 HOH HOH A . C 3 HOH 32 532 83 HOH HOH A . C 3 HOH 33 533 118 HOH HOH A . C 3 HOH 34 534 1 HOH HOH A . C 3 HOH 35 535 2 HOH HOH A . C 3 HOH 36 536 3 HOH HOH A . C 3 HOH 37 537 4 HOH HOH A . C 3 HOH 38 538 5 HOH HOH A . C 3 HOH 39 539 6 HOH HOH A . C 3 HOH 40 540 7 HOH HOH A . C 3 HOH 41 541 8 HOH HOH A . C 3 HOH 42 542 9 HOH HOH A . C 3 HOH 43 543 10 HOH HOH A . C 3 HOH 44 544 11 HOH HOH A . C 3 HOH 45 545 13 HOH HOH A . C 3 HOH 46 546 14 HOH HOH A . C 3 HOH 47 547 15 HOH HOH A . C 3 HOH 48 548 16 HOH HOH A . C 3 HOH 49 549 17 HOH HOH A . C 3 HOH 50 550 18 HOH HOH A . C 3 HOH 51 551 19 HOH HOH A . C 3 HOH 52 552 21 HOH HOH A . C 3 HOH 53 553 22 HOH HOH A . C 3 HOH 54 554 23 HOH HOH A . C 3 HOH 55 555 24 HOH HOH A . C 3 HOH 56 556 25 HOH HOH A . C 3 HOH 57 557 26 HOH HOH A . C 3 HOH 58 558 27 HOH HOH A . C 3 HOH 59 559 28 HOH HOH A . C 3 HOH 60 560 29 HOH HOH A . C 3 HOH 61 561 30 HOH HOH A . C 3 HOH 62 562 31 HOH HOH A . C 3 HOH 63 563 36 HOH HOH A . C 3 HOH 64 564 37 HOH HOH A . C 3 HOH 65 565 38 HOH HOH A . C 3 HOH 66 566 39 HOH HOH A . C 3 HOH 67 567 40 HOH HOH A . C 3 HOH 68 568 41 HOH HOH A . C 3 HOH 69 569 42 HOH HOH A . C 3 HOH 70 570 43 HOH HOH A . C 3 HOH 71 571 44 HOH HOH A . C 3 HOH 72 572 47 HOH HOH A . C 3 HOH 73 573 48 HOH HOH A . C 3 HOH 74 574 49 HOH HOH A . C 3 HOH 75 575 50 HOH HOH A . C 3 HOH 76 576 51 HOH HOH A . C 3 HOH 77 577 52 HOH HOH A . C 3 HOH 78 578 53 HOH HOH A . C 3 HOH 79 579 56 HOH HOH A . C 3 HOH 80 580 57 HOH HOH A . C 3 HOH 81 581 59 HOH HOH A . C 3 HOH 82 582 61 HOH HOH A . C 3 HOH 83 583 63 HOH HOH A . C 3 HOH 84 584 64 HOH HOH A . C 3 HOH 85 585 65 HOH HOH A . C 3 HOH 86 586 66 HOH HOH A . C 3 HOH 87 587 67 HOH HOH A . C 3 HOH 88 588 68 HOH HOH A . C 3 HOH 89 589 70 HOH HOH A . C 3 HOH 90 590 72 HOH HOH A . C 3 HOH 91 591 75 HOH HOH A . C 3 HOH 92 592 76 HOH HOH A . C 3 HOH 93 593 77 HOH HOH A . C 3 HOH 94 594 79 HOH HOH A . C 3 HOH 95 595 80 HOH HOH A . C 3 HOH 96 596 81 HOH HOH A . C 3 HOH 97 597 85 HOH HOH A . C 3 HOH 98 598 87 HOH HOH A . C 3 HOH 99 599 89 HOH HOH A . C 3 HOH 100 600 92 HOH HOH A . C 3 HOH 101 601 94 HOH HOH A . C 3 HOH 102 602 95 HOH HOH A . C 3 HOH 103 603 96 HOH HOH A . C 3 HOH 104 604 97 HOH HOH A . C 3 HOH 105 605 99 HOH HOH A . C 3 HOH 106 606 100 HOH HOH A . C 3 HOH 107 607 101 HOH HOH A . C 3 HOH 108 608 103 HOH HOH A . C 3 HOH 109 609 104 HOH HOH A . C 3 HOH 110 610 105 HOH HOH A . C 3 HOH 111 611 106 HOH HOH A . C 3 HOH 112 612 107 HOH HOH A . C 3 HOH 113 613 109 HOH HOH A . C 3 HOH 114 614 110 HOH HOH A . C 3 HOH 115 615 111 HOH HOH A . C 3 HOH 116 616 113 HOH HOH A . C 3 HOH 117 617 114 HOH HOH A . C 3 HOH 118 618 115 HOH HOH A . C 3 HOH 119 619 117 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1360 ? 1 MORE -13 ? 1 'SSA (A^2)' 14140 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 501 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-20 2 'Structure model' 1 1 2017-09-06 3 'Structure model' 1 2 2019-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' pdbx_audit_support 3 2 'Structure model' pdbx_struct_assembly 4 2 'Structure model' pdbx_struct_assembly_prop 5 2 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 2 'Structure model' '_pdbx_audit_support.funding_organization' 3 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 4 2 'Structure model' '_pdbx_struct_assembly_prop.type' 5 2 'Structure model' '_pdbx_struct_assembly_prop.value' 6 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 7 3 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A PHE 9 ? A CA A PHE 9 ? ? C A PHE 9 ? ? 96.92 110.40 -13.48 2.00 N 2 1 NE A ARG 191 ? A CZ A ARG 191 ? A NH1 A ARG 191 ? A 125.53 120.30 5.23 0.50 N 3 1 NE A ARG 191 ? A CZ A ARG 191 ? A NH2 A ARG 191 ? A 115.58 120.30 -4.72 0.50 N 4 1 NE A ARG 202 ? ? CZ A ARG 202 ? ? NH1 A ARG 202 ? ? 117.15 120.30 -3.15 0.50 N 5 1 NE A ARG 213 ? ? CZ A ARG 213 ? ? NH1 A ARG 213 ? ? 123.67 120.30 3.37 0.50 N 6 1 NE A ARG 302 ? ? CZ A ARG 302 ? ? NH1 A ARG 302 ? ? 123.70 120.30 3.40 0.50 N 7 1 NE A ARG 302 ? ? CZ A ARG 302 ? ? NH2 A ARG 302 ? ? 115.05 120.30 -5.25 0.50 N 8 1 CB A LEU 311 ? ? CG A LEU 311 ? ? CD2 A LEU 311 ? ? 121.81 111.00 10.81 1.70 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 4 ? CG ? A ASP 1 CG 2 1 Y 1 A ASP 4 ? OD1 ? A ASP 1 OD1 3 1 Y 1 A ASP 4 ? OD2 ? A ASP 1 OD2 4 1 Y 1 A ARG 70 ? CG ? A ARG 67 CG 5 1 Y 1 A ARG 70 ? CD ? A ARG 67 CD 6 1 Y 1 A ARG 70 ? NE ? A ARG 67 NE 7 1 Y 1 A ARG 70 ? CZ ? A ARG 67 CZ 8 1 Y 1 A ARG 70 ? NH1 ? A ARG 67 NH1 9 1 Y 1 A ARG 70 ? NH2 ? A ARG 67 NH2 10 1 Y 1 A GLU 193 ? CG ? A GLU 190 CG 11 1 Y 1 A GLU 193 ? CD ? A GLU 190 CD 12 1 Y 1 A GLU 193 ? OE1 ? A GLU 190 OE1 13 1 Y 1 A GLU 193 ? OE2 ? A GLU 190 OE2 14 1 Y 1 A HIS 196 ? CG ? A HIS 193 CG 15 1 Y 1 A HIS 196 ? ND1 ? A HIS 193 ND1 16 1 Y 1 A HIS 196 ? CD2 ? A HIS 193 CD2 17 1 Y 1 A HIS 196 ? CE1 ? A HIS 193 CE1 18 1 Y 1 A HIS 196 ? NE2 ? A HIS 193 NE2 19 1 Y 1 A ARG 310 ? CG ? A ARG 307 CG 20 1 Y 1 A ARG 310 ? CD ? A ARG 307 CD 21 1 Y 1 A ARG 310 ? NE ? A ARG 307 NE 22 1 Y 1 A ARG 310 ? CZ ? A ARG 307 CZ 23 1 Y 1 A ARG 310 ? NH1 ? A ARG 307 NH1 24 1 Y 1 A ARG 310 ? NH2 ? A ARG 307 NH2 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 8P41GM103473-16 1 'Department of Energy (DOE, United States)' 'United States' 'FWP BO-70' 2 'National Science Foundation (NSF, United States)' 'United States' MCB-1329956 3 'National Science Foundation (NSF, United States)' 'United States' CHE-1147335 4 'Department of Energy (DOE, United States)' 'United States' DE-AC02-98CH10886 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid ; LBV 3 water HOH #