data_4YB0 # _entry.id 4YB0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YB0 pdb_00004yb0 10.2210/pdb4yb0/pdb WWPDB D_1000207148 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4YAZ PDB . unspecified 4YB1 PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YB0 _pdbx_database_status.recvd_initial_deposition_date 2015-02-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, A.M.' 1 'Patel, D.J.' 2 'Rajashankar, R.K.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 1 _citation.page_last 12 _citation.title ;Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch. ; _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2015.03.004 _citation.pdbx_database_id_PubMed 25818298 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ren, A.' 1 ? primary 'Wang, X.C.' 2 ? primary 'Kellenberger, C.A.' 3 ? primary 'Rajashankar, K.R.' 4 ? primary 'Jones, R.A.' 5 ? primary 'Hammond, M.C.' 6 ? primary 'Patel, D.J.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 103.33 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4YB0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 174.829 _cell.length_a_esd ? _cell.length_b 44.901 _cell.length_b_esd ? _cell.length_c 68.210 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (84-MER)' 26834.090 2 ? ? ? ? 2 non-polymer man "GUANOSINE-5'-DIPHOSPHATE" 443.201 2 ? ? ? ? 3 non-polymer syn ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; 690.411 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 6 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GUACACGACAAUACUAAACCAUCCGCGAGGAUGGGGCGGAAAGCCUAAGGGUCUCCCUGAGACAGCCGGGCUGCCGAAAU AUC ; _entity_poly.pdbx_seq_one_letter_code_can ;GUACACGACAAUACUAAACCAUCCGCGAGGAUGGGGCGGAAAGCCUAAGGGUCUCCCUGAGACAGCCGGGCUGCCGAAAU AUC ; _entity_poly.pdbx_strand_id R,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 A n 1 4 C n 1 5 A n 1 6 C n 1 7 G n 1 8 A n 1 9 C n 1 10 A n 1 11 A n 1 12 U n 1 13 A n 1 14 C n 1 15 U n 1 16 A n 1 17 A n 1 18 A n 1 19 C n 1 20 C n 1 21 A n 1 22 U n 1 23 C n 1 24 C n 1 25 G n 1 26 C n 1 27 G n 1 28 A n 1 29 G n 1 30 G n 1 31 A n 1 32 U n 1 33 G n 1 34 G n 1 35 G n 1 36 G n 1 37 C n 1 38 G n 1 39 G n 1 40 A n 1 41 A n 1 42 A n 1 43 G n 1 44 C n 1 45 C n 1 46 U n 1 47 A n 1 48 A n 1 49 G n 1 50 G n 1 51 G n 1 52 U n 1 53 C n 1 54 U n 1 55 C n 1 56 C n 1 57 C n 1 58 U n 1 59 G n 1 60 A n 1 61 G n 1 62 A n 1 63 C n 1 64 A n 1 65 G n 1 66 C n 1 67 C n 1 68 G n 1 69 G n 1 70 G n 1 71 C n 1 72 U n 1 73 G n 1 74 C n 1 75 C n 1 76 G n 1 77 A n 1 78 A n 1 79 A n 1 80 U n 1 81 A n 1 82 U n 1 83 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 83 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AE017180.2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Geobacter _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4YB0 _struct_ref.pdbx_db_accession 4YB0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YB0 R 1 ? 83 ? 4YB0 2 ? 84 ? 2 84 2 1 4YB0 A 1 ? 83 ? 4YB0 2 ? 84 ? 2 84 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 C2E non-polymer . ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; 'c-di-GMP; Cyclic diguanosine monophosphate' 'C20 H24 N10 O14 P2' 690.411 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YB0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Na/K-phosphate, pH 6.2-6.6, 0.2 M NaCl and 40-45% PEG400' _exptl_crystal_grow.pdbx_pH_range 6.2-6.6 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YB0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.12 _reflns.d_resolution_low 85.1 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28937 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.3 _reflns.percent_possible_obs 98.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.3 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.12 _reflns_shell.d_res_low 2.24 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 97.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YB0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.121 _refine.ls_d_res_low 85.1 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28916 _refine.ls_number_reflns_R_free 1466 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.72 _refine.ls_percent_reflns_R_free 5.07 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2297 _refine.ls_R_factor_R_free 0.2620 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2280 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4YAZ _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.79 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.35 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3616 _refine_hist.pdbx_number_atoms_ligand 99 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 3757 _refine_hist.d_res_high 2.121 _refine_hist.d_res_low 85.1 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 4152 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.457 ? 6470 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.739 ? 2052 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.060 ? 854 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 172 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.121 2.1972 . . 151 2677 97.00 . . . 0.3713 . 0.3560 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1972 2.2852 . . 157 2710 98.00 . . . 0.3571 . 0.3394 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2852 2.3892 . . 159 2695 97.00 . . . 0.3983 . 0.3508 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3892 2.5152 . . 132 2774 99.00 . . . 0.3938 . 0.3395 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5152 2.6728 . . 128 2748 99.00 . . . 0.3415 . 0.3250 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6728 2.8791 . . 137 2741 98.00 . . . 0.3403 . 0.3321 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8791 3.1689 . . 150 2785 99.00 . . . 0.3020 . 0.2649 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1689 3.6274 . . 148 2747 97.00 . . . 0.2649 . 0.2032 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6274 4.5702 . . 163 2777 98.00 . . . 0.2052 . 0.1843 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5702 85.1271 . . 141 2796 96.00 . . . 0.2059 . 0.1728 . . . . . . . . . . # _struct.entry_id 4YB0 _struct.title ;3',3'-cGAMP riboswitch bound with c-di-GMP ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YB0 _struct_keywords.text ;riboswitch, 3', 3'-cGAMP, spinach, RNA structure, c-di-GMP, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 2 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 6 ? O N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 1 P ? ? ? 1_555 C GDP . "O3'" ? ? R G 2 R GDP 101 1_555 ? ? ? ? ? ? ? 1.678 ? ? covale2 covale both ? B G 1 P ? ? ? 1_555 J GDP . "O3'" ? ? A G 2 A GDP 101 1_555 ? ? ? ? ? ? ? 1.649 ? ? metalc1 metalc ? ? A A 10 OP1 ? ? ? 1_555 F MG . MG ? ? R A 11 R MG 104 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc2 metalc ? ? A A 10 OP2 ? ? ? 1_555 F MG . MG ? ? R A 11 R MG 104 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc3 metalc ? ? A A 11 OP2 ? ? ? 1_555 F MG . MG ? ? R A 12 R MG 104 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc4 metalc ? ? A G 35 O6 ? ? ? 1_555 I K . K ? ? R G 36 R K 107 1_555 ? ? ? ? ? ? ? 2.821 ? ? metalc5 metalc ? ? A A 40 "O3'" ? ? ? 1_555 G MG . MG ? ? R A 41 R MG 105 1_555 ? ? ? ? ? ? ? 2.887 ? ? metalc6 metalc ? ? A A 40 "O2'" ? ? ? 1_555 G MG . MG ? ? R A 41 R MG 105 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc7 metalc ? ? A G 50 O6 ? ? ? 1_555 H K . K ? ? R G 51 R K 106 1_555 ? ? ? ? ? ? ? 2.686 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? R MG 103 R HOH 205 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? R MG 103 R HOH 208 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? R MG 103 R HOH 214 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? R MG 103 R HOH 226 1_555 ? ? ? ? ? ? ? 1.834 ? ? metalc12 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? R MG 105 R HOH 213 1_555 ? ? ? ? ? ? ? 1.946 ? ? metalc13 metalc ? ? H K . K ? ? ? 1_555 N HOH . O ? ? R K 106 R HOH 211 1_555 ? ? ? ? ? ? ? 2.586 ? ? metalc14 metalc ? ? H K . K ? ? ? 1_555 N HOH . O ? ? R K 106 R HOH 217 1_555 ? ? ? ? ? ? ? 2.453 ? ? metalc15 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? R K 107 R HOH 216 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc16 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? R K 107 R HOH 221 1_555 ? ? ? ? ? ? ? 2.624 ? ? metalc17 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? R K 107 R HOH 223 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc18 metalc ? ? B G 27 OP1 ? ? ? 1_555 L MG . MG ? ? A G 28 A MG 103 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc19 metalc ? ? B A 40 "O2'" ? ? ? 1_555 M MG . MG ? ? A A 41 A MG 104 1_555 ? ? ? ? ? ? ? 2.877 ? ? metalc20 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 202 1_555 ? ? ? ? ? ? ? 2.685 ? ? metalc21 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 203 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc22 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 208 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc23 metalc ? ? M MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 104 A HOH 215 1_555 ? ? ? ? ? ? ? 2.382 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B U 82 O2 ? ? A G 2 A U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? B G 1 O6 ? ? ? 1_555 B U 82 N3 ? ? A G 2 A U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 81 N1 ? ? A U 3 A A 82 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog4 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 80 N3 ? ? A A 4 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 80 O4 ? ? A A 4 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B A 5 N1 ? ? ? 1_555 B A 79 N6 ? ? A A 6 A A 80 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog7 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 76 N1 ? ? A C 7 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 76 O6 ? ? A C 7 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 76 N2 ? ? A C 7 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B C 6 O2 ? ? ? 1_555 B A 77 N6 ? ? A C 7 A A 78 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog11 hydrog ? ? B C 6 O2 ? ? ? 1_555 B A 78 N6 ? ? A C 7 A A 79 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog12 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 75 N3 ? ? A G 8 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 75 O2 ? ? A G 8 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 75 N4 ? ? A G 8 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B A 10 N6 ? ? ? 1_555 B C 75 O2 ? ? A A 11 A C 76 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog16 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 40 N6 ? ? A U 13 A A 41 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog17 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 39 N1 ? ? A C 15 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 39 O6 ? ? A C 15 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 39 N2 ? ? A C 15 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B U 15 N3 ? ? ? 1_555 B G 38 O6 ? ? A U 16 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? B U 15 O2 ? ? ? 1_555 B G 38 N1 ? ? A U 16 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? B A 16 N3 ? ? ? 1_555 B C 37 N4 ? ? A A 17 A C 38 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog23 hydrog ? ? B A 18 N6 ? ? ? 1_555 B G 35 N3 ? ? A A 19 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? B A 18 N7 ? ? ? 1_555 B G 35 N2 ? ? A A 19 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 34 N1 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 34 O6 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 34 N2 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 33 N1 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 33 O6 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 33 N2 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B A 21 N1 ? ? ? 1_555 B U 32 N3 ? ? A A 22 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 32 O4 ? ? A A 22 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 31 N1 ? ? A U 23 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B U 22 O4 ? ? ? 1_555 B A 31 N6 ? ? A U 23 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 23 N3 ? ? ? 1_555 B G 30 N1 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 23 N4 ? ? ? 1_555 B G 30 O6 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 23 O2 ? ? ? 1_555 B G 30 N2 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 29 N1 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 29 O6 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 29 N2 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 25 N2 ? ? ? 1_555 B A 28 N7 ? ? A G 26 A A 29 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog42 hydrog ? ? B G 27 N2 ? ? ? 1_555 B U 54 O2 ? ? A G 28 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog43 hydrog ? ? B A 28 N3 ? ? ? 1_555 B G 61 N2 ? ? A A 29 A G 62 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog44 hydrog ? ? B C 37 N3 ? ? ? 1_555 B G 65 N1 ? ? A C 38 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 37 N4 ? ? ? 1_555 B G 65 O6 ? ? A C 38 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 37 O2 ? ? ? 1_555 B G 65 N2 ? ? A C 38 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 38 N2 ? ? ? 1_555 B A 42 N3 ? ? A G 39 A A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog48 hydrog ? ? B A 41 N6 ? ? ? 1_555 B U 72 O2 ? ? A A 42 A U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog49 hydrog ? ? B A 41 N7 ? ? ? 1_555 B U 72 N3 ? ? A A 42 A U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? B G 43 N1 ? ? ? 1_555 B C 71 N3 ? ? A G 44 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 43 N2 ? ? ? 1_555 B C 71 O2 ? ? A G 44 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 43 O6 ? ? ? 1_555 B C 71 N4 ? ? A G 44 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 44 N3 ? ? ? 1_555 B G 70 N1 ? ? A C 45 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 44 N4 ? ? ? 1_555 B G 70 O6 ? ? A C 45 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 44 O2 ? ? ? 1_555 B G 70 N2 ? ? A C 45 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 45 N3 ? ? ? 1_555 B G 69 N1 ? ? A C 46 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 45 N4 ? ? ? 1_555 B G 69 O6 ? ? A C 46 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 45 O2 ? ? ? 1_555 B G 69 N2 ? ? A C 46 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B U 46 N3 ? ? ? 1_555 B G 68 O6 ? ? A U 47 A G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog60 hydrog ? ? B U 46 O2 ? ? ? 1_555 B G 68 N1 ? ? A U 47 A G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? B G 49 N1 ? ? ? 1_555 B C 67 N3 ? ? A G 50 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B G 49 N2 ? ? ? 1_555 B C 67 O2 ? ? A G 50 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 49 O6 ? ? ? 1_555 B C 67 N4 ? ? A G 50 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 50 N1 ? ? ? 1_555 B C 66 N3 ? ? A G 51 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 50 N2 ? ? ? 1_555 B C 66 O2 ? ? A G 51 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 50 O6 ? ? ? 1_555 B C 66 N4 ? ? A G 51 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 51 N1 ? ? ? 1_555 B C 63 N3 ? ? A G 52 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 51 N2 ? ? ? 1_555 B C 63 O2 ? ? A G 52 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 51 O6 ? ? ? 1_555 B C 63 N4 ? ? A G 52 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B U 52 N3 ? ? ? 1_555 B A 62 N1 ? ? A U 53 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B U 52 O4 ? ? ? 1_555 B A 62 N6 ? ? A U 53 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B C 53 N3 ? ? ? 1_555 B G 61 N1 ? ? A C 54 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 53 N4 ? ? ? 1_555 B G 61 O6 ? ? A C 54 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 53 O2 ? ? ? 1_555 B G 61 N2 ? ? A C 54 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B U 54 N3 ? ? ? 1_555 B A 60 N1 ? ? A U 55 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B U 54 O4 ? ? ? 1_555 B A 60 N6 ? ? A U 55 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 55 N3 ? ? ? 1_555 B G 59 N1 ? ? A C 56 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 55 N4 ? ? ? 1_555 B G 59 O6 ? ? A C 56 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 55 O2 ? ? ? 1_555 B G 59 N2 ? ? A C 56 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 82 O2 ? ? R G 2 R U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog81 hydrog ? ? A G 1 O6 ? ? ? 1_555 A U 82 N3 ? ? R G 2 R U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 81 N1 ? ? R U 3 R A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 81 N6 ? ? R U 3 R A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 80 N3 ? ? R A 4 R U 81 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog85 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 76 N1 ? ? R C 7 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 76 O6 ? ? R C 7 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 76 N2 ? ? R C 7 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 6 O2 ? ? ? 1_555 A A 78 N6 ? ? R C 7 R A 79 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog89 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 75 N3 ? ? R G 8 R C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 75 O2 ? ? R G 8 R C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 75 N4 ? ? R G 8 R C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A A 10 N6 ? ? ? 1_555 A C 75 O2 ? ? R A 11 R C 76 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog93 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 40 N6 ? ? R U 13 R A 41 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog94 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 39 N1 ? ? R C 15 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 39 O6 ? ? R C 15 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 39 N2 ? ? R C 15 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A U 15 N3 ? ? ? 1_555 A G 38 O6 ? ? R U 16 R G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog98 hydrog ? ? A U 15 O2 ? ? ? 1_555 A G 38 N1 ? ? R U 16 R G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog99 hydrog ? ? A A 16 N3 ? ? ? 1_555 A C 37 N4 ? ? R A 17 R C 38 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog100 hydrog ? ? A A 18 N6 ? ? ? 1_555 A G 35 N3 ? ? R A 19 R G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog101 hydrog ? ? A A 18 N7 ? ? ? 1_555 A G 35 N2 ? ? R A 19 R G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog102 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 34 N1 ? ? R C 20 R G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 34 O6 ? ? R C 20 R G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 34 N2 ? ? R C 20 R G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 33 N1 ? ? R C 21 R G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 33 O6 ? ? R C 21 R G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 33 N2 ? ? R C 21 R G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 32 N3 ? ? R A 22 R U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 32 O4 ? ? R A 22 R U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 31 N1 ? ? R U 23 R A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 31 N6 ? ? R U 23 R A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 30 N1 ? ? R C 24 R G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 30 O6 ? ? R C 24 R G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 30 N2 ? ? R C 24 R G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 29 N1 ? ? R C 25 R G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 29 O6 ? ? R C 25 R G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 29 N2 ? ? R C 25 R G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A G 25 N2 ? ? ? 1_555 A A 28 N7 ? ? R G 26 R A 29 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog119 hydrog ? ? A G 27 N2 ? ? ? 1_555 A U 54 O2 ? ? R G 28 R U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog120 hydrog ? ? A A 28 N3 ? ? ? 1_555 A G 61 N2 ? ? R A 29 R G 62 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog121 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 65 N1 ? ? R C 38 R G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 65 O6 ? ? R C 38 R G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 65 N2 ? ? R C 38 R G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A G 38 N2 ? ? ? 1_555 A A 42 N3 ? ? R G 39 R A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog125 hydrog ? ? A A 41 N6 ? ? ? 1_555 A U 72 O2 ? ? R A 42 R U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog126 hydrog ? ? A A 41 N7 ? ? ? 1_555 A U 72 N3 ? ? R A 42 R U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog127 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 71 N3 ? ? R G 44 R C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 71 O2 ? ? R G 44 R C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 71 N4 ? ? R G 44 R C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 70 N1 ? ? R C 45 R G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 70 O6 ? ? R C 45 R G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 70 N2 ? ? R C 45 R G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 69 N1 ? ? R C 46 R G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 69 O6 ? ? R C 46 R G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 69 N2 ? ? R C 46 R G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? A U 46 N3 ? ? ? 1_555 A G 68 O6 ? ? R U 47 R G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog137 hydrog ? ? A U 46 O2 ? ? ? 1_555 A G 68 N1 ? ? R U 47 R G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog138 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 67 N3 ? ? R G 50 R C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 67 O2 ? ? R G 50 R C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 67 N4 ? ? R G 50 R C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 66 N3 ? ? R G 51 R C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 66 O2 ? ? R G 51 R C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 66 N4 ? ? R G 51 R C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 63 N3 ? ? R G 52 R C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 63 O2 ? ? R G 52 R C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 63 N4 ? ? R G 52 R C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? A U 52 N3 ? ? ? 1_555 A A 62 N1 ? ? R U 53 R A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? A U 52 O4 ? ? ? 1_555 A A 62 N6 ? ? R U 53 R A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 61 N1 ? ? R C 54 R G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? A C 53 N4 ? ? ? 1_555 A G 61 O6 ? ? R C 54 R G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 61 N2 ? ? R C 54 R G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? A U 54 N3 ? ? ? 1_555 A A 60 N1 ? ? R U 55 R A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? A U 54 O4 ? ? ? 1_555 A A 60 N6 ? ? R U 55 R A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 59 N1 ? ? R C 56 R G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 59 O6 ? ? R C 56 R G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 59 N2 ? ? R C 56 R G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software R GDP 101 ? 2 'binding site for residue GDP R 101' AC2 Software R C2E 102 ? 10 'binding site for residue C2E R 102' AC3 Software R MG 103 ? 6 'binding site for residue MG R 103' AC4 Software R MG 104 ? 2 'binding site for residue MG R 104' AC5 Software R MG 105 ? 5 'binding site for residue MG R 105' AC6 Software R K 106 ? 6 'binding site for residue K R 106' AC7 Software R K 107 ? 6 'binding site for residue K R 107' AC8 Software A C2E 102 ? 11 'binding site for residue C2E A 102' AC9 Software A MG 103 ? 5 'binding site for residue MG A 103' AD1 Software A MG 104 ? 4 'binding site for residue MG A 104' AD2 Software A GDP 101 ? 4 'binding site for GDP A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 1 ? G R 2 . ? 1_555 ? 2 AC1 2 C A 83 ? C R 84 . ? 1_555 ? 3 AC2 10 G A 7 ? G R 8 . ? 1_555 ? 4 AC2 10 A A 10 ? A R 11 . ? 1_555 ? 5 AC2 10 A A 11 ? A R 12 . ? 1_555 ? 6 AC2 10 A A 13 ? A R 14 . ? 1_555 ? 7 AC2 10 G A 39 ? G R 40 . ? 1_555 ? 8 AC2 10 A A 40 ? A R 41 . ? 1_555 ? 9 AC2 10 A A 41 ? A R 42 . ? 1_555 ? 10 AC2 10 C A 74 ? C R 75 . ? 1_555 ? 11 AC2 10 C A 75 ? C R 76 . ? 1_555 ? 12 AC2 10 MG G . ? MG R 105 . ? 1_555 ? 13 AC3 6 G A 25 ? G R 26 . ? 1_555 ? 14 AC3 6 G A 27 ? G R 28 . ? 1_555 ? 15 AC3 6 HOH N . ? HOH R 205 . ? 1_555 ? 16 AC3 6 HOH N . ? HOH R 208 . ? 1_555 ? 17 AC3 6 HOH N . ? HOH R 214 . ? 1_555 ? 18 AC3 6 HOH N . ? HOH R 226 . ? 1_555 ? 19 AC4 2 A A 10 ? A R 11 . ? 1_555 ? 20 AC4 2 A A 11 ? A R 12 . ? 1_555 ? 21 AC5 5 G A 7 ? G R 8 . ? 1_555 ? 22 AC5 5 A A 40 ? A R 41 . ? 1_555 ? 23 AC5 5 A A 41 ? A R 42 . ? 1_555 ? 24 AC5 5 C2E D . ? C2E R 102 . ? 1_555 ? 25 AC5 5 HOH N . ? HOH R 213 . ? 1_555 ? 26 AC6 6 A A 47 ? A R 48 . ? 1_555 ? 27 AC6 6 G A 49 ? G R 50 . ? 1_555 ? 28 AC6 6 G A 50 ? G R 51 . ? 1_555 ? 29 AC6 6 A A 64 ? A R 65 . ? 1_555 ? 30 AC6 6 HOH N . ? HOH R 211 . ? 1_555 ? 31 AC6 6 HOH N . ? HOH R 217 . ? 1_555 ? 32 AC7 6 G A 33 ? G R 34 . ? 1_555 ? 33 AC7 6 G A 34 ? G R 35 . ? 1_555 ? 34 AC7 6 G A 35 ? G R 36 . ? 1_555 ? 35 AC7 6 HOH N . ? HOH R 216 . ? 1_555 ? 36 AC7 6 HOH N . ? HOH R 221 . ? 1_555 ? 37 AC7 6 HOH N . ? HOH R 223 . ? 1_555 ? 38 AC8 11 G B 7 ? G A 8 . ? 1_555 ? 39 AC8 11 A B 8 ? A A 9 . ? 1_555 ? 40 AC8 11 A B 10 ? A A 11 . ? 1_555 ? 41 AC8 11 A B 11 ? A A 12 . ? 1_555 ? 42 AC8 11 A B 13 ? A A 14 . ? 1_555 ? 43 AC8 11 G B 39 ? G A 40 . ? 1_555 ? 44 AC8 11 A B 40 ? A A 41 . ? 1_555 ? 45 AC8 11 A B 41 ? A A 42 . ? 1_555 ? 46 AC8 11 C B 74 ? C A 75 . ? 1_555 ? 47 AC8 11 C B 75 ? C A 76 . ? 1_555 ? 48 AC8 11 MG M . ? MG A 104 . ? 1_555 ? 49 AC9 5 G B 25 ? G A 26 . ? 1_555 ? 50 AC9 5 G B 27 ? G A 28 . ? 1_555 ? 51 AC9 5 HOH O . ? HOH A 202 . ? 1_555 ? 52 AC9 5 HOH O . ? HOH A 203 . ? 1_555 ? 53 AC9 5 HOH O . ? HOH A 208 . ? 1_555 ? 54 AD1 4 A B 40 ? A A 41 . ? 1_555 ? 55 AD1 4 A B 41 ? A A 42 . ? 1_555 ? 56 AD1 4 C2E K . ? C2E A 102 . ? 1_555 ? 57 AD1 4 HOH O . ? HOH A 215 . ? 1_555 ? 58 AD2 4 U B 2 ? U A 3 . ? 1_555 ? 59 AD2 4 A B 81 ? A A 82 . ? 1_555 ? 60 AD2 4 U B 82 ? U A 83 . ? 1_555 ? 61 AD2 4 C B 83 ? C A 84 . ? 1_555 ? # _atom_sites.entry_id 4YB0 _atom_sites.fract_transf_matrix[1][1] 0.005720 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001355 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022271 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015067 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G G R . n A 1 2 U 2 3 3 U U R . n A 1 3 A 3 4 4 A A R . n A 1 4 C 4 5 5 C C R . n A 1 5 A 5 6 6 A A R . n A 1 6 C 6 7 7 C C R . n A 1 7 G 7 8 8 G G R . n A 1 8 A 8 9 9 A A R . n A 1 9 C 9 10 10 C C R . n A 1 10 A 10 11 11 A A R . n A 1 11 A 11 12 12 A A R . n A 1 12 U 12 13 13 U U R . n A 1 13 A 13 14 14 A A R . n A 1 14 C 14 15 15 C C R . n A 1 15 U 15 16 16 U U R . n A 1 16 A 16 17 17 A A R . n A 1 17 A 17 18 18 A A R . n A 1 18 A 18 19 19 A A R . n A 1 19 C 19 20 20 C C R . n A 1 20 C 20 21 21 C C R . n A 1 21 A 21 22 22 A A R . n A 1 22 U 22 23 23 U U R . n A 1 23 C 23 24 24 C C R . n A 1 24 C 24 25 25 C C R . n A 1 25 G 25 26 26 G G R . n A 1 26 C 26 27 27 C C R . n A 1 27 G 27 28 28 G G R . n A 1 28 A 28 29 29 A A R . n A 1 29 G 29 30 30 G G R . n A 1 30 G 30 31 31 G G R . n A 1 31 A 31 32 32 A A R . n A 1 32 U 32 33 33 U U R . n A 1 33 G 33 34 34 G G R . n A 1 34 G 34 35 35 G G R . n A 1 35 G 35 36 36 G G R . n A 1 36 G 36 37 37 G G R . n A 1 37 C 37 38 38 C C R . n A 1 38 G 38 39 39 G G R . n A 1 39 G 39 40 40 G G R . n A 1 40 A 40 41 41 A A R . n A 1 41 A 41 42 42 A A R . n A 1 42 A 42 43 43 A A R . n A 1 43 G 43 44 44 G G R . n A 1 44 C 44 45 45 C C R . n A 1 45 C 45 46 46 C C R . n A 1 46 U 46 47 47 U U R . n A 1 47 A 47 48 48 A A R . n A 1 48 A 48 49 49 A A R . n A 1 49 G 49 50 50 G G R . n A 1 50 G 50 51 51 G G R . n A 1 51 G 51 52 52 G G R . n A 1 52 U 52 53 53 U U R . n A 1 53 C 53 54 54 C C R . n A 1 54 U 54 55 55 U U R . n A 1 55 C 55 56 56 C C R . n A 1 56 C 56 57 57 C C R . n A 1 57 C 57 58 58 C C R . n A 1 58 U 58 59 59 U U R . n A 1 59 G 59 60 60 G G R . n A 1 60 A 60 61 61 A A R . n A 1 61 G 61 62 62 G G R . n A 1 62 A 62 63 63 A A R . n A 1 63 C 63 64 64 C C R . n A 1 64 A 64 65 65 A A R . n A 1 65 G 65 66 66 G G R . n A 1 66 C 66 67 67 C C R . n A 1 67 C 67 68 68 C C R . n A 1 68 G 68 69 69 G G R . n A 1 69 G 69 70 70 G G R . n A 1 70 G 70 71 71 G G R . n A 1 71 C 71 72 72 C C R . n A 1 72 U 72 73 73 U U R . n A 1 73 G 73 74 74 G G R . n A 1 74 C 74 75 75 C C R . n A 1 75 C 75 76 76 C C R . n A 1 76 G 76 77 77 G G R . n A 1 77 A 77 78 78 A A R . n A 1 78 A 78 79 79 A A R . n A 1 79 A 79 80 80 A A R . n A 1 80 U 80 81 81 U U R . n A 1 81 A 81 82 82 A A R . n A 1 82 U 82 83 83 U U R . n A 1 83 C 83 84 84 C C R . n B 1 1 G 1 2 2 G G A . n B 1 2 U 2 3 3 U U A . n B 1 3 A 3 4 4 A A A . n B 1 4 C 4 5 5 C C A . n B 1 5 A 5 6 6 A A A . n B 1 6 C 6 7 7 C C A . n B 1 7 G 7 8 8 G G A . n B 1 8 A 8 9 9 A A A . n B 1 9 C 9 10 10 C C A . n B 1 10 A 10 11 11 A A A . n B 1 11 A 11 12 12 A A A . n B 1 12 U 12 13 13 U U A . n B 1 13 A 13 14 14 A A A . n B 1 14 C 14 15 15 C C A . n B 1 15 U 15 16 16 U U A . n B 1 16 A 16 17 17 A A A . n B 1 17 A 17 18 18 A A A . n B 1 18 A 18 19 19 A A A . n B 1 19 C 19 20 20 C C A . n B 1 20 C 20 21 21 C C A . n B 1 21 A 21 22 22 A A A . n B 1 22 U 22 23 23 U U A . n B 1 23 C 23 24 24 C C A . n B 1 24 C 24 25 25 C C A . n B 1 25 G 25 26 26 G G A . n B 1 26 C 26 27 27 C C A . n B 1 27 G 27 28 28 G G A . n B 1 28 A 28 29 29 A A A . n B 1 29 G 29 30 30 G G A . n B 1 30 G 30 31 31 G G A . n B 1 31 A 31 32 32 A A A . n B 1 32 U 32 33 33 U U A . n B 1 33 G 33 34 34 G G A . n B 1 34 G 34 35 35 G G A . n B 1 35 G 35 36 36 G G A . n B 1 36 G 36 37 37 G G A . n B 1 37 C 37 38 38 C C A . n B 1 38 G 38 39 39 G G A . n B 1 39 G 39 40 40 G G A . n B 1 40 A 40 41 41 A A A . n B 1 41 A 41 42 42 A A A . n B 1 42 A 42 43 43 A A A . n B 1 43 G 43 44 44 G G A . n B 1 44 C 44 45 45 C C A . n B 1 45 C 45 46 46 C C A . n B 1 46 U 46 47 47 U U A . n B 1 47 A 47 48 48 A A A . n B 1 48 A 48 49 49 A A A . n B 1 49 G 49 50 50 G G A . n B 1 50 G 50 51 51 G G A . n B 1 51 G 51 52 52 G G A . n B 1 52 U 52 53 53 U U A . n B 1 53 C 53 54 54 C C A . n B 1 54 U 54 55 55 U U A . n B 1 55 C 55 56 56 C C A . n B 1 56 C 56 57 57 C C A . n B 1 57 C 57 58 58 C C A . n B 1 58 U 58 59 59 U U A . n B 1 59 G 59 60 60 G G A . n B 1 60 A 60 61 61 A A A . n B 1 61 G 61 62 62 G G A . n B 1 62 A 62 63 63 A A A . n B 1 63 C 63 64 64 C C A . n B 1 64 A 64 65 65 A A A . n B 1 65 G 65 66 66 G G A . n B 1 66 C 66 67 67 C C A . n B 1 67 C 67 68 68 C C A . n B 1 68 G 68 69 69 G G A . n B 1 69 G 69 70 70 G G A . n B 1 70 G 70 71 71 G G A . n B 1 71 C 71 72 72 C C A . n B 1 72 U 72 73 73 U U A . n B 1 73 G 73 74 74 G G A . n B 1 74 C 74 75 75 C C A . n B 1 75 C 75 76 76 C C A . n B 1 76 G 76 77 77 G G A . n B 1 77 A 77 78 78 A A A . n B 1 78 A 78 79 79 A A A . n B 1 79 A 79 80 80 A A A . n B 1 80 U 80 81 81 U U A . n B 1 81 A 81 82 82 A A A . n B 1 82 U 82 83 83 U U A . n B 1 83 C 83 84 84 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP 1 101 1 GDP GDP R . D 3 C2E 1 102 2 C2E C2E R . E 4 MG 1 103 1 MG MG R . F 4 MG 1 104 9 MG MG R . G 4 MG 1 105 10 MG MG R . H 5 K 1 106 1 K K R . I 5 K 1 107 2 K K R . J 2 GDP 1 101 1 GDP GDP A . K 3 C2E 1 102 1 C2E C2E A . L 4 MG 1 103 5 MG MG A . M 4 MG 1 104 8 MG MG A . N 6 HOH 1 201 3 HOH HOH R . N 6 HOH 2 202 2 HOH HOH R . N 6 HOH 3 203 10 HOH HOH R . N 6 HOH 4 204 9 HOH HOH R . N 6 HOH 5 205 29 HOH HOH R . N 6 HOH 6 206 5 HOH HOH R . N 6 HOH 7 207 8 HOH HOH R . N 6 HOH 8 208 46 HOH HOH R . N 6 HOH 9 209 1 HOH HOH R . N 6 HOH 10 210 13 HOH HOH R . N 6 HOH 11 211 21 HOH HOH R . N 6 HOH 12 212 22 HOH HOH R . N 6 HOH 13 213 28 HOH HOH R . N 6 HOH 14 214 30 HOH HOH R . N 6 HOH 15 215 31 HOH HOH R . N 6 HOH 16 216 32 HOH HOH R . N 6 HOH 17 217 35 HOH HOH R . N 6 HOH 18 218 36 HOH HOH R . N 6 HOH 19 219 37 HOH HOH R . N 6 HOH 20 220 47 HOH HOH R . N 6 HOH 21 221 48 HOH HOH R . N 6 HOH 22 222 49 HOH HOH R . N 6 HOH 23 223 50 HOH HOH R . N 6 HOH 24 224 51 HOH HOH R . N 6 HOH 25 225 55 HOH HOH R . N 6 HOH 26 226 56 HOH HOH R . N 6 HOH 27 227 57 HOH HOH R . O 6 HOH 1 201 52 HOH HOH A . O 6 HOH 2 202 11 HOH HOH A . O 6 HOH 3 203 23 HOH HOH A . O 6 HOH 4 204 7 HOH HOH A . O 6 HOH 5 205 12 HOH HOH A . O 6 HOH 6 206 14 HOH HOH A . O 6 HOH 7 207 15 HOH HOH A . O 6 HOH 8 208 24 HOH HOH A . O 6 HOH 9 209 26 HOH HOH A . O 6 HOH 10 210 27 HOH HOH A . O 6 HOH 11 211 41 HOH HOH A . O 6 HOH 12 212 42 HOH HOH A . O 6 HOH 13 213 43 HOH HOH A . O 6 HOH 14 214 44 HOH HOH A . O 6 HOH 15 215 53 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,N 2 1 B,J,K,L,M,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 10 ? R A 11 ? 1_555 MG ? F MG . ? R MG 104 ? 1_555 OP2 ? A A 10 ? R A 11 ? 1_555 60.8 ? 2 OP1 ? A A 10 ? R A 11 ? 1_555 MG ? F MG . ? R MG 104 ? 1_555 OP2 ? A A 11 ? R A 12 ? 1_555 73.6 ? 3 OP2 ? A A 10 ? R A 11 ? 1_555 MG ? F MG . ? R MG 104 ? 1_555 OP2 ? A A 11 ? R A 12 ? 1_555 118.0 ? 4 O6 ? A G 35 ? R G 36 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? R HOH 216 ? 1_555 132.0 ? 5 O6 ? A G 35 ? R G 36 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? R HOH 221 ? 1_555 80.3 ? 6 O ? N HOH . ? R HOH 216 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? R HOH 221 ? 1_555 59.1 ? 7 O6 ? A G 35 ? R G 36 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? R HOH 223 ? 1_555 97.2 ? 8 O ? N HOH . ? R HOH 216 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? R HOH 223 ? 1_555 97.8 ? 9 O ? N HOH . ? R HOH 221 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? R HOH 223 ? 1_555 77.7 ? 10 "O3'" ? A A 40 ? R A 41 ? 1_555 MG ? G MG . ? R MG 105 ? 1_555 "O2'" ? A A 40 ? R A 41 ? 1_555 58.6 ? 11 "O3'" ? A A 40 ? R A 41 ? 1_555 MG ? G MG . ? R MG 105 ? 1_555 O ? N HOH . ? R HOH 213 ? 1_555 151.8 ? 12 "O2'" ? A A 40 ? R A 41 ? 1_555 MG ? G MG . ? R MG 105 ? 1_555 O ? N HOH . ? R HOH 213 ? 1_555 146.6 ? 13 O6 ? A G 50 ? R G 51 ? 1_555 K ? H K . ? R K 106 ? 1_555 O ? N HOH . ? R HOH 211 ? 1_555 91.4 ? 14 O6 ? A G 50 ? R G 51 ? 1_555 K ? H K . ? R K 106 ? 1_555 O ? N HOH . ? R HOH 217 ? 1_555 124.7 ? 15 O ? N HOH . ? R HOH 211 ? 1_555 K ? H K . ? R K 106 ? 1_555 O ? N HOH . ? R HOH 217 ? 1_555 119.4 ? 16 O ? N HOH . ? R HOH 205 ? 1_555 MG ? E MG . ? R MG 103 ? 1_555 O ? N HOH . ? R HOH 208 ? 1_555 114.6 ? 17 O ? N HOH . ? R HOH 205 ? 1_555 MG ? E MG . ? R MG 103 ? 1_555 O ? N HOH . ? R HOH 214 ? 1_555 102.4 ? 18 O ? N HOH . ? R HOH 208 ? 1_555 MG ? E MG . ? R MG 103 ? 1_555 O ? N HOH . ? R HOH 214 ? 1_555 75.2 ? 19 O ? N HOH . ? R HOH 205 ? 1_555 MG ? E MG . ? R MG 103 ? 1_555 O ? N HOH . ? R HOH 226 ? 1_555 130.4 ? 20 O ? N HOH . ? R HOH 208 ? 1_555 MG ? E MG . ? R MG 103 ? 1_555 O ? N HOH . ? R HOH 226 ? 1_555 94.2 ? 21 O ? N HOH . ? R HOH 214 ? 1_555 MG ? E MG . ? R MG 103 ? 1_555 O ? N HOH . ? R HOH 226 ? 1_555 124.3 ? 22 OP1 ? B G 27 ? A G 28 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 202 ? 1_555 90.4 ? 23 OP1 ? B G 27 ? A G 28 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 203 ? 1_555 136.5 ? 24 O ? O HOH . ? A HOH 202 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 203 ? 1_555 79.1 ? 25 OP1 ? B G 27 ? A G 28 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 208 ? 1_555 134.1 ? 26 O ? O HOH . ? A HOH 202 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 208 ? 1_555 92.7 ? 27 O ? O HOH . ? A HOH 203 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 208 ? 1_555 88.9 ? 28 "O2'" ? B A 40 ? A A 41 ? 1_555 MG ? M MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 215 ? 1_555 144.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-15 2 'Structure model' 1 1 2015-04-22 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' entity_src_gen 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' pdbx_struct_oper_list 9 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.value' 19 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 20 3 'Structure model' '_struct_conn.conn_type_id' 21 3 'Structure model' '_struct_conn.id' 22 3 'Structure model' '_struct_conn.pdbx_dist_value' 23 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 161.1264 _pdbx_refine_tls.origin_y 34.9699 _pdbx_refine_tls.origin_z 150.5993 _pdbx_refine_tls.T[1][1] 0.4339 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0343 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.1348 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.4342 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0701 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.4793 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.6981 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.3071 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.9327 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.9247 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.3079 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.7555 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0342 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0705 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.1592 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0499 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0721 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0709 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.3250 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.3889 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0925 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.9_1692)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O5'" R G 2 ? ? "O3'" R GDP 101 ? ? 1.92 2 1 OP1 A G 2 ? ? "O3'" A GDP 101 ? ? 1.94 3 1 OP1 R G 2 ? ? "O3'" R GDP 101 ? ? 2.03 4 1 "O3'" R A 14 ? ? O R HOH 201 ? ? 2.17 5 1 O A HOH 206 ? ? O A HOH 213 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" R C 25 ? ? P R C 25 ? ? OP2 R C 25 ? ? 99.90 105.70 -5.80 0.90 N 2 1 "O5'" R G 30 ? ? P R G 30 ? ? OP2 R G 30 ? ? 100.15 105.70 -5.55 0.90 N 3 1 C5 R G 31 ? ? C6 R G 31 ? ? O6 R G 31 ? ? 124.03 128.60 -4.57 0.60 N 4 1 "O4'" R G 37 ? ? "C1'" R G 37 ? ? N9 R G 37 ? ? 112.82 108.50 4.32 0.70 N 5 1 "O4'" R A 42 ? ? "C1'" R A 42 ? ? N9 R A 42 ? ? 112.94 108.50 4.44 0.70 N 6 1 C5 R G 51 ? ? C6 R G 51 ? ? O6 R G 51 ? ? 124.64 128.60 -3.96 0.60 N 7 1 N1 R U 59 ? ? C2 R U 59 ? ? O2 R U 59 ? ? 128.27 122.80 5.47 0.70 N 8 1 N3 R U 59 ? ? C2 R U 59 ? ? O2 R U 59 ? ? 117.04 122.20 -5.16 0.70 N 9 1 C2 R U 59 ? ? N1 R U 59 ? ? "C1'" R U 59 ? ? 126.27 117.70 8.57 1.20 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 C2E P1 P N N 73 C2E O2P O N N 74 C2E O1P O N N 75 C2E "O5'" O N N 76 C2E "C5'" C N N 77 C2E "C4'" C N R 78 C2E "O4'" O N N 79 C2E "C3'" C N S 80 C2E "O3'" O N N 81 C2E "C2'" C N R 82 C2E "O2'" O N N 83 C2E "C1'" C N R 84 C2E N9 N Y N 85 C2E C8 C Y N 86 C2E N7 N Y N 87 C2E C5 C Y N 88 C2E C6 C N N 89 C2E O6 O N N 90 C2E N1 N N N 91 C2E C2 C N N 92 C2E N2 N N N 93 C2E N3 N N N 94 C2E C4 C Y N 95 C2E P11 P N N 96 C2E O21 O N N 97 C2E O11 O N N 98 C2E O5A O N N 99 C2E C5A C N N 100 C2E C4A C N R 101 C2E O4A O N N 102 C2E C3A C N S 103 C2E O3A O N N 104 C2E C2A C N R 105 C2E O2A O N N 106 C2E C1A C N R 107 C2E N91 N Y N 108 C2E C81 C Y N 109 C2E N71 N Y N 110 C2E C51 C Y N 111 C2E C61 C N N 112 C2E O61 O N N 113 C2E N11 N N N 114 C2E C21 C N N 115 C2E N21 N N N 116 C2E N31 N N N 117 C2E C41 C Y N 118 C2E HO2P H N N 119 C2E "H5'1" H N N 120 C2E "H5'2" H N N 121 C2E "H4'" H N N 122 C2E "H3'" H N N 123 C2E "H2'" H N N 124 C2E "HO2'" H N N 125 C2E "H1'" H N N 126 C2E H8 H N N 127 C2E HN1 H N N 128 C2E HN21 H N N 129 C2E HN22 H N N 130 C2E HO21 H N N 131 C2E H511 H N N 132 C2E H512 H N N 133 C2E H4A H N N 134 C2E H3A H N N 135 C2E H2A H N N 136 C2E HO2A H N N 137 C2E H1A H N N 138 C2E H81 H N N 139 C2E HN11 H N N 140 C2E HN24 H N N 141 C2E HN23 H N N 142 G OP3 O N N 143 G P P N N 144 G OP1 O N N 145 G OP2 O N N 146 G "O5'" O N N 147 G "C5'" C N N 148 G "C4'" C N R 149 G "O4'" O N N 150 G "C3'" C N S 151 G "O3'" O N N 152 G "C2'" C N R 153 G "O2'" O N N 154 G "C1'" C N R 155 G N9 N Y N 156 G C8 C Y N 157 G N7 N Y N 158 G C5 C Y N 159 G C6 C N N 160 G O6 O N N 161 G N1 N N N 162 G C2 C N N 163 G N2 N N N 164 G N3 N N N 165 G C4 C Y N 166 G HOP3 H N N 167 G HOP2 H N N 168 G "H5'" H N N 169 G "H5''" H N N 170 G "H4'" H N N 171 G "H3'" H N N 172 G "HO3'" H N N 173 G "H2'" H N N 174 G "HO2'" H N N 175 G "H1'" H N N 176 G H8 H N N 177 G H1 H N N 178 G H21 H N N 179 G H22 H N N 180 GDP PB P N N 181 GDP O1B O N N 182 GDP O2B O N N 183 GDP O3B O N N 184 GDP O3A O N N 185 GDP PA P N N 186 GDP O1A O N N 187 GDP O2A O N N 188 GDP "O5'" O N N 189 GDP "C5'" C N N 190 GDP "C4'" C N R 191 GDP "O4'" O N N 192 GDP "C3'" C N S 193 GDP "O3'" O N N 194 GDP "C2'" C N R 195 GDP "O2'" O N N 196 GDP "C1'" C N R 197 GDP N9 N Y N 198 GDP C8 C Y N 199 GDP N7 N Y N 200 GDP C5 C Y N 201 GDP C6 C N N 202 GDP O6 O N N 203 GDP N1 N N N 204 GDP C2 C N N 205 GDP N2 N N N 206 GDP N3 N N N 207 GDP C4 C Y N 208 GDP HOB2 H N N 209 GDP HOB3 H N N 210 GDP HOA2 H N N 211 GDP "H5'" H N N 212 GDP "H5''" H N N 213 GDP "H4'" H N N 214 GDP "H3'" H N N 215 GDP "HO3'" H N N 216 GDP "H2'" H N N 217 GDP "HO2'" H N N 218 GDP "H1'" H N N 219 GDP H8 H N N 220 GDP HN1 H N N 221 GDP HN21 H N N 222 GDP HN22 H N N 223 HOH O O N N 224 HOH H1 H N N 225 HOH H2 H N N 226 K K K N N 227 MG MG MG N N 228 U OP3 O N N 229 U P P N N 230 U OP1 O N N 231 U OP2 O N N 232 U "O5'" O N N 233 U "C5'" C N N 234 U "C4'" C N R 235 U "O4'" O N N 236 U "C3'" C N S 237 U "O3'" O N N 238 U "C2'" C N R 239 U "O2'" O N N 240 U "C1'" C N R 241 U N1 N N N 242 U C2 C N N 243 U O2 O N N 244 U N3 N N N 245 U C4 C N N 246 U O4 O N N 247 U C5 C N N 248 U C6 C N N 249 U HOP3 H N N 250 U HOP2 H N N 251 U "H5'" H N N 252 U "H5''" H N N 253 U "H4'" H N N 254 U "H3'" H N N 255 U "HO3'" H N N 256 U "H2'" H N N 257 U "HO2'" H N N 258 U "H1'" H N N 259 U H3 H N N 260 U H5 H N N 261 U H6 H N N 262 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 C2E P1 O2P sing N N 76 C2E O1P P1 doub N N 77 C2E "O5'" P1 sing N N 78 C2E "C5'" "O5'" sing N N 79 C2E "C4'" "O4'" sing N N 80 C2E "C4'" "C5'" sing N N 81 C2E "C3'" "C4'" sing N N 82 C2E "O3'" P11 sing N N 83 C2E "O3'" "C3'" sing N N 84 C2E "C2'" "C3'" sing N N 85 C2E "C2'" "C1'" sing N N 86 C2E "O2'" "C2'" sing N N 87 C2E "C1'" "O4'" sing N N 88 C2E "C1'" N9 sing N N 89 C2E N9 C4 sing Y N 90 C2E N9 C8 sing Y N 91 C2E C8 N7 doub Y N 92 C2E C5 N7 sing Y N 93 C2E C5 C6 sing N N 94 C2E C6 O6 doub N N 95 C2E N1 C6 sing N N 96 C2E C2 N1 sing N N 97 C2E N2 C2 sing N N 98 C2E N3 C2 doub N N 99 C2E N3 C4 sing N N 100 C2E C4 C5 doub Y N 101 C2E P11 O21 sing N N 102 C2E P11 O5A sing N N 103 C2E O11 P11 doub N N 104 C2E C5A O5A sing N N 105 C2E C5A C4A sing N N 106 C2E C4A O4A sing N N 107 C2E C4A C3A sing N N 108 C2E O4A C1A sing N N 109 C2E C3A C2A sing N N 110 C2E O3A C3A sing N N 111 C2E O3A P1 sing N N 112 C2E C2A O2A sing N N 113 C2E C1A C2A sing N N 114 C2E C1A N91 sing N N 115 C2E N91 C41 sing Y N 116 C2E C81 N71 doub Y N 117 C2E C81 N91 sing Y N 118 C2E N71 C51 sing Y N 119 C2E C51 C41 doub Y N 120 C2E C51 C61 sing N N 121 C2E C61 O61 doub N N 122 C2E C61 N11 sing N N 123 C2E C21 N11 sing N N 124 C2E C21 N21 sing N N 125 C2E N31 C21 doub N N 126 C2E C41 N31 sing N N 127 C2E O2P HO2P sing N N 128 C2E "C5'" "H5'1" sing N N 129 C2E "C5'" "H5'2" sing N N 130 C2E "C4'" "H4'" sing N N 131 C2E "C3'" "H3'" sing N N 132 C2E "C2'" "H2'" sing N N 133 C2E "O2'" "HO2'" sing N N 134 C2E "C1'" "H1'" sing N N 135 C2E C8 H8 sing N N 136 C2E N1 HN1 sing N N 137 C2E N2 HN21 sing N N 138 C2E N2 HN22 sing N N 139 C2E O21 HO21 sing N N 140 C2E C5A H511 sing N N 141 C2E C5A H512 sing N N 142 C2E C4A H4A sing N N 143 C2E C3A H3A sing N N 144 C2E C2A H2A sing N N 145 C2E O2A HO2A sing N N 146 C2E C1A H1A sing N N 147 C2E C81 H81 sing N N 148 C2E N11 HN11 sing N N 149 C2E N21 HN24 sing N N 150 C2E N21 HN23 sing N N 151 G OP3 P sing N N 152 G OP3 HOP3 sing N N 153 G P OP1 doub N N 154 G P OP2 sing N N 155 G P "O5'" sing N N 156 G OP2 HOP2 sing N N 157 G "O5'" "C5'" sing N N 158 G "C5'" "C4'" sing N N 159 G "C5'" "H5'" sing N N 160 G "C5'" "H5''" sing N N 161 G "C4'" "O4'" sing N N 162 G "C4'" "C3'" sing N N 163 G "C4'" "H4'" sing N N 164 G "O4'" "C1'" sing N N 165 G "C3'" "O3'" sing N N 166 G "C3'" "C2'" sing N N 167 G "C3'" "H3'" sing N N 168 G "O3'" "HO3'" sing N N 169 G "C2'" "O2'" sing N N 170 G "C2'" "C1'" sing N N 171 G "C2'" "H2'" sing N N 172 G "O2'" "HO2'" sing N N 173 G "C1'" N9 sing N N 174 G "C1'" "H1'" sing N N 175 G N9 C8 sing Y N 176 G N9 C4 sing Y N 177 G C8 N7 doub Y N 178 G C8 H8 sing N N 179 G N7 C5 sing Y N 180 G C5 C6 sing N N 181 G C5 C4 doub Y N 182 G C6 O6 doub N N 183 G C6 N1 sing N N 184 G N1 C2 sing N N 185 G N1 H1 sing N N 186 G C2 N2 sing N N 187 G C2 N3 doub N N 188 G N2 H21 sing N N 189 G N2 H22 sing N N 190 G N3 C4 sing N N 191 GDP PB O1B doub N N 192 GDP PB O2B sing N N 193 GDP PB O3B sing N N 194 GDP PB O3A sing N N 195 GDP O2B HOB2 sing N N 196 GDP O3B HOB3 sing N N 197 GDP O3A PA sing N N 198 GDP PA O1A doub N N 199 GDP PA O2A sing N N 200 GDP PA "O5'" sing N N 201 GDP O2A HOA2 sing N N 202 GDP "O5'" "C5'" sing N N 203 GDP "C5'" "C4'" sing N N 204 GDP "C5'" "H5'" sing N N 205 GDP "C5'" "H5''" sing N N 206 GDP "C4'" "O4'" sing N N 207 GDP "C4'" "C3'" sing N N 208 GDP "C4'" "H4'" sing N N 209 GDP "O4'" "C1'" sing N N 210 GDP "C3'" "O3'" sing N N 211 GDP "C3'" "C2'" sing N N 212 GDP "C3'" "H3'" sing N N 213 GDP "O3'" "HO3'" sing N N 214 GDP "C2'" "O2'" sing N N 215 GDP "C2'" "C1'" sing N N 216 GDP "C2'" "H2'" sing N N 217 GDP "O2'" "HO2'" sing N N 218 GDP "C1'" N9 sing N N 219 GDP "C1'" "H1'" sing N N 220 GDP N9 C8 sing Y N 221 GDP N9 C4 sing Y N 222 GDP C8 N7 doub Y N 223 GDP C8 H8 sing N N 224 GDP N7 C5 sing Y N 225 GDP C5 C6 sing N N 226 GDP C5 C4 doub Y N 227 GDP C6 O6 doub N N 228 GDP C6 N1 sing N N 229 GDP N1 C2 sing N N 230 GDP N1 HN1 sing N N 231 GDP C2 N2 sing N N 232 GDP C2 N3 doub N N 233 GDP N2 HN21 sing N N 234 GDP N2 HN22 sing N N 235 GDP N3 C4 sing N N 236 HOH O H1 sing N N 237 HOH O H2 sing N N 238 U OP3 P sing N N 239 U OP3 HOP3 sing N N 240 U P OP1 doub N N 241 U P OP2 sing N N 242 U P "O5'" sing N N 243 U OP2 HOP2 sing N N 244 U "O5'" "C5'" sing N N 245 U "C5'" "C4'" sing N N 246 U "C5'" "H5'" sing N N 247 U "C5'" "H5''" sing N N 248 U "C4'" "O4'" sing N N 249 U "C4'" "C3'" sing N N 250 U "C4'" "H4'" sing N N 251 U "O4'" "C1'" sing N N 252 U "C3'" "O3'" sing N N 253 U "C3'" "C2'" sing N N 254 U "C3'" "H3'" sing N N 255 U "O3'" "HO3'" sing N N 256 U "C2'" "O2'" sing N N 257 U "C2'" "C1'" sing N N 258 U "C2'" "H2'" sing N N 259 U "O2'" "HO2'" sing N N 260 U "C1'" N1 sing N N 261 U "C1'" "H1'" sing N N 262 U N1 C2 sing N N 263 U N1 C6 sing N N 264 U C2 O2 doub N N 265 U C2 N3 sing N N 266 U N3 C4 sing N N 267 U N3 H3 sing N N 268 U C4 O4 doub N N 269 U C4 C5 sing N N 270 U C5 C6 doub N N 271 U C5 H5 sing N N 272 U C6 H6 sing N N 273 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4YB0 'double helix' 4YB0 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A U 82 1_555 -1.980 -0.774 0.332 -1.545 -16.068 -10.527 1 R_G2:U83_R R 2 ? R 83 ? 28 1 1 A U 2 1_555 A A 81 1_555 -0.106 -0.175 0.294 -4.538 -21.104 4.964 2 R_U3:A82_R R 3 ? R 82 ? 20 1 1 A A 3 1_555 A U 80 1_555 0.997 0.212 0.432 1.686 -14.350 3.315 3 R_A4:U81_R R 4 ? R 81 ? ? ? 1 A C 6 1_555 A G 76 1_555 0.214 -0.075 0.276 -22.395 -2.635 1.687 4 R_C7:G77_R R 7 ? R 77 ? 19 1 1 A G 7 1_555 A C 75 1_555 0.104 -0.079 0.075 12.953 -0.369 1.190 5 R_G8:C76_R R 8 ? R 76 ? 19 1 1 A U 12 1_555 A A 40 1_555 -0.860 1.910 0.207 -20.135 -8.534 -51.822 6 R_U13:A41_R R 13 ? R 41 ? ? ? 1 A C 14 1_555 A G 39 1_555 0.189 0.049 -0.056 2.056 -0.334 2.914 7 R_C15:G40_R R 15 ? R 40 ? 19 1 1 A U 15 1_555 A G 38 1_555 2.590 -0.615 -0.164 8.273 -2.596 1.696 8 R_U16:G39_R R 16 ? R 39 ? 28 1 1 A G 65 1_555 A C 37 1_555 0.051 -0.134 0.196 -5.207 -14.209 -3.179 9 R_G66:C38_R R 66 ? R 38 ? 19 1 1 A A 18 1_555 A G 35 1_555 -6.990 -4.139 -0.077 8.919 -2.579 -5.111 10 R_A19:G36_R R 19 ? R 36 ? 11 10 1 A C 19 1_555 A G 34 1_555 0.117 -0.066 -0.434 12.982 -18.496 2.346 11 R_C20:G35_R R 20 ? R 35 ? 19 1 1 A C 20 1_555 A G 33 1_555 0.322 -0.141 -0.043 5.409 -9.399 2.339 12 R_C21:G34_R R 21 ? R 34 ? 19 1 1 A A 21 1_555 A U 32 1_555 0.045 -0.145 -0.125 3.852 -11.110 5.436 13 R_A22:U33_R R 22 ? R 33 ? 20 1 1 A U 22 1_555 A A 31 1_555 0.373 -0.271 -0.014 1.718 -15.580 4.108 14 R_U23:A32_R R 23 ? R 32 ? 20 1 1 A C 23 1_555 A G 30 1_555 0.131 -0.445 -0.250 3.863 -11.037 -3.252 15 R_C24:G31_R R 24 ? R 31 ? 19 1 1 A C 24 1_555 A G 29 1_555 0.330 -0.159 -0.250 10.529 -2.427 1.383 16 R_C25:G30_R R 25 ? R 30 ? 19 1 1 A A 41 1_555 A U 72 1_555 -4.226 -2.191 -0.488 10.391 -8.393 -94.661 17 R_A42:U73_R R 42 ? R 73 ? 24 4 1 A G 43 1_555 A C 71 1_555 -0.327 -0.257 0.228 9.204 -2.185 -2.464 18 R_G44:C72_R R 44 ? R 72 ? 19 1 1 A C 44 1_555 A G 70 1_555 0.109 -0.314 -0.150 9.607 -8.263 -2.675 19 R_C45:G71_R R 45 ? R 71 ? 19 1 1 A C 45 1_555 A G 69 1_555 0.404 -0.159 -0.152 4.280 -11.507 2.067 20 R_C46:G70_R R 46 ? R 70 ? 19 1 1 A U 46 1_555 A G 68 1_555 2.637 -0.688 -0.181 -0.469 -0.177 0.603 21 R_U47:G69_R R 47 ? R 69 ? 28 1 1 A G 49 1_555 A C 67 1_555 -0.307 -0.238 -0.383 -13.418 -9.806 0.313 22 R_G50:C68_R R 50 ? R 68 ? 19 1 1 A G 50 1_555 A C 66 1_555 0.368 -0.260 -0.230 -8.775 -10.622 -1.119 23 R_G51:C67_R R 51 ? R 67 ? 19 1 1 A G 51 1_555 A C 63 1_555 -0.081 -0.121 0.035 4.391 3.570 -0.647 24 R_G52:C64_R R 52 ? R 64 ? 19 1 1 A U 52 1_555 A A 62 1_555 -0.136 -0.135 -0.079 13.192 -1.183 3.110 25 R_U53:A63_R R 53 ? R 63 ? 20 1 1 A C 53 1_555 A G 61 1_555 0.332 -0.049 -0.307 6.715 -17.704 4.158 26 R_C54:G62_R R 54 ? R 62 ? 19 1 1 A U 54 1_555 A A 60 1_555 -0.147 -0.124 0.200 -4.023 -8.452 0.229 27 R_U55:A61_R R 55 ? R 61 ? 20 1 1 A C 55 1_555 A G 59 1_555 -0.096 -0.202 0.129 10.027 -6.133 -0.929 28 R_C56:G60_R R 56 ? R 60 ? 19 1 1 B G 1 1_555 B U 82 1_555 -2.128 -0.587 0.578 3.641 -15.083 8.549 29 A_G2:U83_A A 2 ? A 83 ? 28 1 1 B U 2 1_555 B A 81 1_555 -0.014 0.241 0.263 1.827 -20.038 5.731 30 A_U3:A82_A A 3 ? A 82 ? ? ? 1 B A 3 1_555 B U 80 1_555 0.607 -0.186 0.337 8.720 -5.481 -4.758 31 A_A4:U81_A A 4 ? A 81 ? 20 1 1 B A 5 1_555 B A 79 1_555 3.983 2.052 0.365 -18.945 -6.061 -73.845 32 A_A6:A80_A A 6 ? A 80 ? ? ? 1 B C 6 1_555 B G 76 1_555 -0.106 -0.154 0.320 -24.064 -3.809 -2.073 33 A_C7:G77_A A 7 ? A 77 ? 19 1 1 B G 7 1_555 B C 75 1_555 -0.122 -0.089 0.123 15.976 -0.405 -0.637 34 A_G8:C76_A A 8 ? A 76 ? 19 1 1 B U 12 1_555 B A 40 1_555 -0.978 1.869 0.044 -18.985 -14.125 -53.303 35 A_U13:A41_A A 13 ? A 41 ? ? ? 1 B C 14 1_555 B G 39 1_555 -0.685 -0.094 -0.159 -0.910 0.469 -3.515 36 A_C15:G40_A A 15 ? A 40 ? 19 1 1 B U 15 1_555 B G 38 1_555 1.872 -0.401 -0.296 10.549 -7.090 1.222 37 A_U16:G39_A A 16 ? A 39 ? 28 1 1 B G 65 1_555 B C 37 1_555 0.287 -0.269 0.277 -1.465 -15.782 -0.404 38 A_G66:C38_A A 66 ? A 38 ? 19 1 1 B A 18 1_555 B G 35 1_555 -6.917 -4.033 0.123 12.680 -4.360 -6.452 39 A_A19:G36_A A 19 ? A 36 ? 11 10 1 B C 19 1_555 B G 34 1_555 0.146 -0.196 -0.636 10.318 -18.702 -0.352 40 A_C20:G35_A A 20 ? A 35 ? 19 1 1 B C 20 1_555 B G 33 1_555 0.325 0.096 0.139 -3.058 -2.213 2.572 41 A_C21:G34_A A 21 ? A 34 ? 19 1 1 B A 21 1_555 B U 32 1_555 0.296 -0.127 0.028 -4.040 -4.660 2.393 42 A_A22:U33_A A 22 ? A 33 ? 20 1 1 B U 22 1_555 B A 31 1_555 -0.228 -0.163 -0.032 -3.212 -3.335 -1.702 43 A_U23:A32_A A 23 ? A 32 ? 20 1 1 B C 23 1_555 B G 30 1_555 -0.597 -0.202 -0.403 5.885 -9.171 -1.013 44 A_C24:G31_A A 24 ? A 31 ? 19 1 1 B C 24 1_555 B G 29 1_555 0.266 -0.229 -0.339 8.295 -3.440 0.096 45 A_C25:G30_A A 25 ? A 30 ? 19 1 1 B A 41 1_555 B U 72 1_555 -4.249 -2.127 -0.136 7.827 -0.420 -97.726 46 A_A42:U73_A A 42 ? A 73 ? 24 4 1 B G 43 1_555 B C 71 1_555 -0.401 -0.282 0.207 5.772 -1.185 -3.244 47 A_G44:C72_A A 44 ? A 72 ? 19 1 1 B C 44 1_555 B G 70 1_555 0.389 -0.274 -0.071 9.359 -12.487 -1.008 48 A_C45:G71_A A 45 ? A 71 ? 19 1 1 B C 45 1_555 B G 69 1_555 -0.331 -0.016 -0.220 4.782 -9.642 -2.583 49 A_C46:G70_A A 46 ? A 70 ? 19 1 1 B U 46 1_555 B G 68 1_555 2.106 -0.536 -0.167 1.965 -6.245 -5.127 50 A_U47:G69_A A 47 ? A 69 ? 28 1 1 B G 49 1_555 B C 67 1_555 0.429 -0.180 -0.238 -7.831 -4.042 -5.124 51 A_G50:C68_A A 50 ? A 68 ? 19 1 1 B G 50 1_555 B C 66 1_555 0.704 -0.178 -0.045 -6.424 -2.941 -4.729 52 A_G51:C67_A A 51 ? A 67 ? 19 1 1 B G 51 1_555 B C 63 1_555 -0.350 -0.220 0.043 0.300 -2.243 -0.321 53 A_G52:C64_A A 52 ? A 64 ? 19 1 1 B U 52 1_555 B A 62 1_555 -0.737 -0.280 0.023 13.330 -8.955 -7.923 54 A_U53:A63_A A 53 ? A 63 ? 20 1 1 B C 53 1_555 B G 61 1_555 -0.153 0.025 -0.097 0.716 -8.571 3.100 55 A_C54:G62_A A 54 ? A 62 ? 19 1 1 B U 54 1_555 B A 60 1_555 -0.326 -0.001 0.130 3.177 -2.572 -2.419 56 A_U55:A61_A A 55 ? A 61 ? 20 1 1 B C 55 1_555 B G 59 1_555 -0.031 -0.271 -0.110 13.247 -0.627 -5.206 57 A_C56:G60_A A 56 ? A 60 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A U 82 1_555 A U 2 1_555 A A 81 1_555 0.459 -1.531 3.224 -0.920 6.664 41.829 -2.765 -0.725 2.947 9.262 1.279 42.342 1 RR_G2U3:A82U83_RR R 2 ? R 83 ? R 3 ? R 82 ? 1 A U 2 1_555 A A 81 1_555 A A 3 1_555 A U 80 1_555 -0.304 -1.220 2.939 0.951 11.658 38.794 -2.871 0.530 2.478 17.084 -1.393 40.454 2 RR_U3A4:U81A82_RR R 3 ? R 82 ? R 4 ? R 81 ? 1 A C 6 1_555 A G 76 1_555 A G 7 1_555 A C 75 1_555 -0.133 -0.537 2.486 2.951 13.661 24.113 -3.471 0.786 1.887 29.719 -6.420 27.819 3 RR_C7G8:C76G77_RR R 7 ? R 77 ? R 8 ? R 76 ? 1 A U 12 1_555 A A 40 1_555 A C 14 1_555 A G 39 1_555 1.031 -3.304 6.338 1.398 3.242 32.254 -6.993 -1.380 6.024 5.813 -2.506 32.441 4 RR_U13C15:G40A41_RR R 13 ? R 41 ? R 15 ? R 40 ? 1 A C 14 1_555 A G 39 1_555 A U 15 1_555 A G 38 1_555 0.019 -1.737 3.250 -0.671 0.257 36.807 -2.785 -0.121 3.238 0.407 1.063 36.814 5 RR_C15U16:G39G40_RR R 15 ? R 40 ? R 16 ? R 39 ? 1 A U 15 1_555 A G 38 1_555 A G 65 1_555 A C 37 1_555 -5.284 -0.510 3.434 -12.404 -1.113 44.605 -0.529 5.394 4.677 -1.434 15.977 46.225 6 RR_U16G66:C38G39_RR R 16 ? R 39 ? R 66 ? R 38 ? 1 A A 18 1_555 A G 35 1_555 A C 19 1_555 A G 34 1_555 0.360 -0.602 3.224 -1.154 9.371 66.211 -0.906 -0.371 3.118 8.533 1.051 66.804 7 RR_A19C20:G35G36_RR R 19 ? R 36 ? R 20 ? R 35 ? 1 A C 19 1_555 A G 34 1_555 A C 20 1_555 A G 33 1_555 -0.561 -1.935 3.514 -4.525 12.346 29.840 -5.556 0.231 2.587 22.641 8.299 32.549 8 RR_C20C21:G34G35_RR R 20 ? R 35 ? R 21 ? R 34 ? 1 A C 20 1_555 A G 33 1_555 A A 21 1_555 A U 32 1_555 -0.095 -1.446 3.226 0.876 16.501 29.441 -4.859 0.289 2.135 29.704 -1.578 33.672 9 RR_C21A22:U33G34_RR R 21 ? R 34 ? R 22 ? R 33 ? 1 A A 21 1_555 A U 32 1_555 A U 22 1_555 A A 31 1_555 -0.150 -1.038 3.298 -2.041 14.049 32.373 -3.692 -0.041 2.641 23.820 3.460 35.273 10 RR_A22U23:A32U33_RR R 22 ? R 33 ? R 23 ? R 32 ? 1 A U 22 1_555 A A 31 1_555 A C 23 1_555 A G 30 1_555 -0.539 -1.583 3.132 1.540 10.151 31.419 -4.304 1.179 2.485 18.148 -2.754 33.013 11 RR_U23C24:G31A32_RR R 23 ? R 32 ? R 24 ? R 31 ? 1 A C 23 1_555 A G 30 1_555 A C 24 1_555 A G 29 1_555 0.667 -2.113 3.193 0.526 7.365 29.654 -5.331 -1.171 2.615 14.116 -1.009 30.540 12 RR_C24C25:G30G31_RR R 24 ? R 31 ? R 25 ? R 30 ? 1 A A 41 1_555 A U 72 1_555 A G 43 1_555 A C 71 1_555 2.498 -2.534 3.166 -10.035 1.133 68.223 -2.278 -2.547 2.783 1.005 8.897 68.877 13 RR_A42G44:C72U73_RR R 42 ? R 73 ? R 44 ? R 72 ? 1 A G 43 1_555 A C 71 1_555 A C 44 1_555 A G 70 1_555 -0.067 -1.479 3.295 1.384 4.057 36.152 -2.923 0.297 3.112 6.509 -2.221 36.397 14 RR_G44C45:G71C72_RR R 44 ? R 72 ? R 45 ? R 71 ? 1 A C 44 1_555 A G 70 1_555 A C 45 1_555 A G 69 1_555 0.537 -1.838 3.335 1.570 7.146 34.153 -4.112 -0.665 2.923 11.997 -2.635 34.905 15 RR_C45C46:G70G71_RR R 45 ? R 71 ? R 46 ? R 70 ? 1 A C 45 1_555 A G 69 1_555 A U 46 1_555 A G 68 1_555 0.042 -1.666 3.404 3.293 8.565 42.069 -3.114 0.267 3.019 11.764 -4.523 43.014 16 RR_C46U47:G69G70_RR R 46 ? R 70 ? R 47 ? R 69 ? 1 A U 46 1_555 A G 68 1_555 A G 49 1_555 A C 67 1_555 -2.720 -1.653 3.580 2.820 4.221 35.140 -3.349 4.889 3.146 6.947 -4.640 35.494 17 RR_U47G50:C68G69_RR R 47 ? R 69 ? R 50 ? R 68 ? 1 A G 49 1_555 A C 67 1_555 A G 50 1_555 A C 66 1_555 0.227 -1.785 3.207 1.114 6.251 32.693 -4.088 -0.224 2.833 10.977 -1.956 33.287 18 RR_G50G51:C67C68_RR R 50 ? R 68 ? R 51 ? R 67 ? 1 A G 50 1_555 A C 66 1_555 A G 51 1_555 A C 63 1_555 3.972 -1.689 3.285 -4.304 -4.324 48.797 -1.714 -5.091 3.076 -5.210 5.186 49.154 19 RR_G51G52:C64C67_RR R 51 ? R 67 ? R 52 ? R 64 ? 1 A G 51 1_555 A C 63 1_555 A U 52 1_555 A A 62 1_555 -0.101 -1.522 3.213 -1.323 1.420 28.770 -3.364 -0.083 3.137 2.854 2.658 28.834 20 RR_G52U53:A63C64_RR R 52 ? R 64 ? R 53 ? R 63 ? 1 A U 52 1_555 A A 62 1_555 A C 53 1_555 A G 61 1_555 0.631 -1.858 3.320 5.045 5.249 36.605 -3.593 -0.326 3.091 8.256 -7.936 37.297 21 RR_U53C54:G62A63_RR R 53 ? R 63 ? R 54 ? R 62 ? 1 A C 53 1_555 A G 61 1_555 A U 54 1_555 A A 60 1_555 -0.716 -2.538 3.509 -5.134 8.725 25.261 -7.526 0.273 2.597 19.006 11.183 27.184 22 RR_C54U55:A61G62_RR R 54 ? R 62 ? R 55 ? R 61 ? 1 A U 54 1_555 A A 60 1_555 A C 55 1_555 A G 59 1_555 -0.158 -1.344 2.905 -0.040 -0.945 30.620 -2.376 0.292 2.945 -1.789 0.076 30.634 23 RR_U55C56:G60A61_RR R 55 ? R 61 ? R 56 ? R 60 ? 1 B G 1 1_555 B U 82 1_555 B U 2 1_555 B A 81 1_555 -0.412 -1.237 3.222 0.217 4.065 41.153 -2.173 0.606 3.089 5.766 -0.308 41.345 24 AA_G2U3:A82U83_AA A 2 ? A 83 ? A 3 ? A 82 ? 1 B U 2 1_555 B A 81 1_555 B A 3 1_555 B U 80 1_555 -0.276 -1.606 2.882 1.310 18.098 28.723 -4.932 0.631 1.603 32.688 -2.365 33.872 25 AA_U3A4:U81A82_AA A 3 ? A 82 ? A 4 ? A 81 ? 1 B A 3 1_555 B U 80 1_555 B A 5 1_555 B A 79 1_555 0.155 -0.786 3.354 -1.728 -1.256 103.723 -0.481 -0.124 3.359 -0.798 1.098 103.739 26 AA_A4A6:A80U81_AA A 4 ? A 81 ? A 6 ? A 80 ? 1 B A 5 1_555 B A 79 1_555 B C 6 1_555 B G 76 1_555 3.364 -1.039 4.538 -7.966 5.586 21.109 -4.833 -11.569 2.743 14.310 20.406 23.220 27 AA_A6C7:G77A80_AA A 6 ? A 80 ? A 7 ? A 77 ? 1 B C 6 1_555 B G 76 1_555 B G 7 1_555 B C 75 1_555 0.177 -0.574 2.371 2.319 12.279 24.119 -3.358 0.026 1.872 27.174 -5.133 27.121 28 AA_C7G8:C76G77_AA A 7 ? A 77 ? A 8 ? A 76 ? 1 B U 12 1_555 B A 40 1_555 B C 14 1_555 B G 39 1_555 0.855 -3.306 6.505 0.319 0.640 26.915 -7.424 -1.674 6.436 1.374 -0.685 26.924 29 AA_U13C15:G40A41_AA A 13 ? A 41 ? A 15 ? A 40 ? 1 B C 14 1_555 B G 39 1_555 B U 15 1_555 B G 38 1_555 0.321 -1.801 3.152 -0.070 -0.034 38.043 -2.759 -0.500 3.153 -0.052 0.108 38.044 30 AA_C15U16:G39G40_AA A 15 ? A 40 ? A 16 ? A 39 ? 1 B U 15 1_555 B G 38 1_555 B G 65 1_555 B C 37 1_555 -5.152 -0.319 3.663 -12.283 -3.013 48.311 -0.090 4.938 4.769 -3.609 14.716 49.842 31 AA_U16G66:C38G39_AA A 16 ? A 39 ? A 66 ? A 38 ? 1 B A 18 1_555 B G 35 1_555 B C 19 1_555 B G 34 1_555 0.213 -1.000 3.443 -1.618 12.676 62.345 -1.521 -0.275 3.202 12.109 1.546 63.512 32 AA_A19C20:G35G36_AA A 19 ? A 36 ? A 20 ? A 35 ? 1 B C 19 1_555 B G 34 1_555 B C 20 1_555 B G 33 1_555 -0.447 -2.337 3.721 -10.855 10.717 30.135 -5.861 -1.080 2.752 19.148 19.394 33.696 33 AA_C20C21:G34G35_AA A 20 ? A 35 ? A 21 ? A 34 ? 1 B C 20 1_555 B G 33 1_555 B A 21 1_555 B U 32 1_555 -0.248 -1.652 3.206 -0.142 7.609 30.948 -4.290 0.429 2.733 13.996 0.261 31.848 34 AA_C21A22:U33G34_AA A 21 ? A 34 ? A 22 ? A 33 ? 1 B A 21 1_555 B U 32 1_555 B U 22 1_555 B A 31 1_555 -0.270 -1.410 3.210 -0.280 12.481 29.502 -4.589 0.444 2.431 23.242 0.521 31.981 35 AA_A22U23:A32U33_AA A 22 ? A 33 ? A 23 ? A 32 ? 1 B U 22 1_555 B A 31 1_555 B C 23 1_555 B G 30 1_555 0.837 -1.720 3.047 6.371 3.353 32.058 -3.578 -0.465 2.964 5.978 -11.357 32.836 36 AA_U23C24:G31A32_AA A 23 ? A 32 ? A 24 ? A 31 ? 1 B C 23 1_555 B G 30 1_555 B C 24 1_555 B G 29 1_555 0.446 -1.771 3.201 1.300 5.640 30.743 -4.283 -0.597 2.855 10.522 -2.425 31.270 37 AA_C24C25:G30G31_AA A 24 ? A 31 ? A 25 ? A 30 ? 1 B A 41 1_555 B U 72 1_555 B G 43 1_555 B C 71 1_555 2.522 -2.602 3.199 -10.150 4.183 64.814 -2.555 -2.702 2.668 3.873 9.399 65.638 38 AA_A42G44:C72U73_AA A 42 ? A 73 ? A 44 ? A 72 ? 1 B G 43 1_555 B C 71 1_555 B C 44 1_555 B G 70 1_555 -0.096 -1.595 3.276 -2.958 0.930 38.745 -2.510 -0.215 3.236 1.399 4.450 38.864 39 AA_G44C45:G71C72_AA A 44 ? A 72 ? A 45 ? A 71 ? 1 B C 44 1_555 B G 70 1_555 B C 45 1_555 B G 69 1_555 0.028 -2.087 3.346 -0.328 7.173 28.094 -5.668 -0.124 2.739 14.479 0.662 28.980 40 AA_C45C46:G70G71_AA A 45 ? A 71 ? A 46 ? A 70 ? 1 B C 45 1_555 B G 69 1_555 B U 46 1_555 B G 68 1_555 0.221 -1.489 3.470 2.074 5.625 42.237 -2.633 -0.088 3.261 7.759 -2.861 42.641 41 AA_C46U47:G69G70_AA A 46 ? A 70 ? A 47 ? A 69 ? 1 B U 46 1_555 B G 68 1_555 B G 49 1_555 B C 67 1_555 -2.869 -1.618 3.526 -0.170 3.653 41.291 -2.698 4.035 3.389 5.168 0.241 41.446 42 AA_U47G50:C68G69_AA A 47 ? A 69 ? A 50 ? A 68 ? 1 B G 49 1_555 B C 67 1_555 B G 50 1_555 B C 66 1_555 0.287 -2.107 3.248 1.672 1.369 29.230 -4.454 -0.213 3.160 2.708 -3.308 29.308 43 AA_G50G51:C67C68_AA A 50 ? A 68 ? A 51 ? A 67 ? 1 B G 50 1_555 B C 66 1_555 B G 51 1_555 B C 63 1_555 4.097 -1.921 3.424 -1.411 -0.472 46.784 -2.377 -5.278 3.324 -0.594 1.777 46.806 44 AA_G51G52:C64C67_AA A 51 ? A 67 ? A 52 ? A 64 ? 1 B G 51 1_555 B C 63 1_555 B U 52 1_555 B A 62 1_555 -0.002 -1.755 3.002 -1.362 2.854 28.226 -4.162 -0.275 2.812 5.828 2.782 28.399 45 AA_G52U53:A63C64_AA A 52 ? A 64 ? A 53 ? A 63 ? 1 B U 52 1_555 B A 62 1_555 B C 53 1_555 B G 61 1_555 1.431 -1.892 3.447 3.168 5.451 38.675 -3.496 -1.742 3.264 8.164 -4.745 39.166 46 AA_U53C54:G62A63_AA A 53 ? A 63 ? A 54 ? A 62 ? 1 B C 53 1_555 B G 61 1_555 B U 54 1_555 B A 60 1_555 -1.003 -2.687 3.180 -2.722 3.737 22.982 -7.786 1.617 2.811 9.259 6.744 23.436 47 AA_C54U55:A61G62_AA A 54 ? A 62 ? A 55 ? A 61 ? 1 B U 54 1_555 B A 60 1_555 B C 55 1_555 B G 59 1_555 0.306 -1.644 3.054 1.447 0.763 31.894 -3.117 -0.311 3.026 1.387 -2.631 31.935 48 AA_U55C56:G60A61_AA A 55 ? A 61 ? A 56 ? A 60 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; C2E 4 'MAGNESIUM ION' MG 5 'POTASSIUM ION' K 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4YAZ _pdbx_initial_refinement_model.details ? #