data_4YGW # _entry.id 4YGW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YGW pdb_00004ygw 10.2210/pdb4ygw/pdb WWPDB D_1000207449 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-01 2 'Structure model' 1 1 2015-07-08 3 'Structure model' 1 2 2015-07-29 4 'Structure model' 1 3 2022-03-30 5 'Structure model' 1 4 2023-09-27 6 'Structure model' 1 5 2023-11-15 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Refinement description' 10 6 'Structure model' 'Data collection' 11 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' database_2 3 4 'Structure model' entity_src_gen 4 4 'Structure model' pdbx_audit_support 5 4 'Structure model' pdbx_entity_src_syn 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_conn 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' pdbx_initial_refinement_model 11 6 'Structure model' chem_comp_atom 12 6 'Structure model' chem_comp_bond 13 7 'Structure model' chem_comp # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 5 4 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 7 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 6 'Structure model' '_chem_comp_atom.atom_id' 18 6 'Structure model' '_chem_comp_bond.atom_id_2' 19 7 'Structure model' '_chem_comp.pdbx_synonyms' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YGW _pdbx_database_status.recvd_initial_deposition_date 2015-02-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Assem, N.' 1 ? 'Ferreira, D.' 2 ? 'Wolan, D.W.' 3 ? 'Dawson, P.E.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 54 _citation.language ? _citation.page_first 8665 _citation.page_last 8668 _citation.title 'Acetone-Linked Peptides: A Convergent Approach for Peptide Macrocyclization and Labeling.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201502607 _citation.pdbx_database_id_PubMed 26096515 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Assem, N.' 1 ? primary 'Ferreira, D.J.' 2 ? primary 'Wolan, D.W.' 3 ? primary 'Dawson, P.E.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'S-peptide: ACE-LYS-GLU-THR-ALA-ALA-HCS-LYS-PHE-GLU-HCS-GLN-HIS-MET-ASP-SER' 1785.050 1 ? ? ? ? 2 polymer man 'Ribonuclease A C2' 11468.903 1 ? ? 'UNP residues 113-215' ? 3 non-polymer syn 1-hydroxypropan-2-one 74.079 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 76 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)KETAA(HCS)KFE(HCS)QHMDS' XKETAAXKFEXQHMDS b ? 2 'polypeptide(L)' no no ;SSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQ ANKHIIVACEGNPYVPVHFDASV ; ;SSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQ ANKHIIVACEGNPYVPVHFDASV ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1-hydroxypropan-2-one 4Y8 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 LYS n 1 3 GLU n 1 4 THR n 1 5 ALA n 1 6 ALA n 1 7 HCS n 1 8 LYS n 1 9 PHE n 1 10 GLU n 1 11 HCS n 1 12 GLN n 1 13 HIS n 1 14 MET n 1 15 ASP n 1 16 SER n 2 1 SER n 2 2 SER n 2 3 ASN n 2 4 TYR n 2 5 CYS n 2 6 ASN n 2 7 GLN n 2 8 MET n 2 9 MET n 2 10 LYS n 2 11 SER n 2 12 ARG n 2 13 ASN n 2 14 LEU n 2 15 THR n 2 16 LYS n 2 17 ASP n 2 18 ARG n 2 19 CYS n 2 20 LYS n 2 21 PRO n 2 22 VAL n 2 23 ASN n 2 24 THR n 2 25 PHE n 2 26 VAL n 2 27 HIS n 2 28 GLU n 2 29 SER n 2 30 LEU n 2 31 ALA n 2 32 ASP n 2 33 VAL n 2 34 GLN n 2 35 ALA n 2 36 VAL n 2 37 CYS n 2 38 SER n 2 39 GLN n 2 40 LYS n 2 41 ASN n 2 42 VAL n 2 43 ALA n 2 44 CYS n 2 45 LYS n 2 46 ASN n 2 47 GLY n 2 48 GLN n 2 49 THR n 2 50 ASN n 2 51 CYS n 2 52 TYR n 2 53 GLN n 2 54 SER n 2 55 TYR n 2 56 SER n 2 57 THR n 2 58 MET n 2 59 SER n 2 60 ILE n 2 61 THR n 2 62 ASP n 2 63 CYS n 2 64 ARG n 2 65 GLU n 2 66 THR n 2 67 GLY n 2 68 SER n 2 69 SER n 2 70 LYS n 2 71 TYR n 2 72 PRO n 2 73 ASN n 2 74 CYS n 2 75 ALA n 2 76 TYR n 2 77 LYS n 2 78 THR n 2 79 THR n 2 80 GLN n 2 81 ALA n 2 82 ASN n 2 83 LYS n 2 84 HIS n 2 85 ILE n 2 86 ILE n 2 87 VAL n 2 88 ALA n 2 89 CYS n 2 90 GLU n 2 91 GLY n 2 92 ASN n 2 93 PRO n 2 94 TYR n 2 95 VAL n 2 96 PRO n 2 97 VAL n 2 98 HIS n 2 99 PHE n 2 100 ASP n 2 101 ALA n 2 102 SER n 2 103 VAL n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 103 _entity_src_gen.gene_src_common_name Bovine _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RAC2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ pancreas _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4Y8 non-polymer . 1-hydroxypropan-2-one ? 'C3 H6 O2' 74.079 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HCS 'L-peptide linking' . '2-AMINO-4-MERCAPTO-BUTYRIC ACID' L-Homocysteine 'C4 H9 N O2 S' 135.185 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE b . n A 1 2 LYS 2 2 2 LYS LYS b . n A 1 3 GLU 3 3 3 GLU GLU b . n A 1 4 THR 4 4 4 THR THR b . n A 1 5 ALA 5 5 5 ALA ALA b . n A 1 6 ALA 6 6 6 ALA ALA b . n A 1 7 HCS 7 7 7 HCS HCS b . n A 1 8 LYS 8 8 8 LYS LYS b . n A 1 9 PHE 9 9 9 PHE PHE b . n A 1 10 GLU 10 10 10 GLU GLU b . n A 1 11 HCS 11 11 11 HCS HCS b . n A 1 12 GLN 12 12 12 GLN GLN b . n A 1 13 HIS 13 13 13 HIS HIS b . n A 1 14 MET 14 14 14 MET MET b . n A 1 15 ASP 15 15 15 ASP ASP b . n A 1 16 SER 16 16 16 SER SER b . n B 2 1 SER 1 22 22 SER SER B . n B 2 2 SER 2 23 23 SER SER B . n B 2 3 ASN 3 24 24 ASN ASN B . n B 2 4 TYR 4 25 25 TYR TYR B . n B 2 5 CYS 5 26 26 CYS CYS B . n B 2 6 ASN 6 27 27 ASN ASN B . n B 2 7 GLN 7 28 28 GLN GLN B . n B 2 8 MET 8 29 29 MET MET B . n B 2 9 MET 9 30 30 MET MET B . n B 2 10 LYS 10 31 31 LYS LYS B . n B 2 11 SER 11 32 32 SER SER B . n B 2 12 ARG 12 33 33 ARG ARG B . n B 2 13 ASN 13 34 34 ASN ASN B . n B 2 14 LEU 14 35 35 LEU LEU B . n B 2 15 THR 15 36 36 THR THR B . n B 2 16 LYS 16 37 37 LYS LYS B . n B 2 17 ASP 17 38 38 ASP ASP B . n B 2 18 ARG 18 39 39 ARG ARG B . n B 2 19 CYS 19 40 40 CYS CYS B . n B 2 20 LYS 20 41 41 LYS LYS B . n B 2 21 PRO 21 42 42 PRO PRO B . n B 2 22 VAL 22 43 43 VAL VAL B . n B 2 23 ASN 23 44 44 ASN ASN B . n B 2 24 THR 24 45 45 THR THR B . n B 2 25 PHE 25 46 46 PHE PHE B . n B 2 26 VAL 26 47 47 VAL VAL B . n B 2 27 HIS 27 48 48 HIS HIS B . n B 2 28 GLU 28 49 49 GLU GLU B . n B 2 29 SER 29 50 50 SER SER B . n B 2 30 LEU 30 51 51 LEU LEU B . n B 2 31 ALA 31 52 52 ALA ALA B . n B 2 32 ASP 32 53 53 ASP ASP B . n B 2 33 VAL 33 54 54 VAL VAL B . n B 2 34 GLN 34 55 55 GLN GLN B . n B 2 35 ALA 35 56 56 ALA ALA B . n B 2 36 VAL 36 57 57 VAL VAL B . n B 2 37 CYS 37 58 58 CYS CYS B . n B 2 38 SER 38 59 59 SER SER B . n B 2 39 GLN 39 60 60 GLN GLN B . n B 2 40 LYS 40 61 61 LYS LYS B . n B 2 41 ASN 41 62 62 ASN ASN B . n B 2 42 VAL 42 63 63 VAL VAL B . n B 2 43 ALA 43 64 64 ALA ALA B . n B 2 44 CYS 44 65 65 CYS CYS B . n B 2 45 LYS 45 66 66 LYS LYS B . n B 2 46 ASN 46 67 67 ASN ASN B . n B 2 47 GLY 47 68 68 GLY GLY B . n B 2 48 GLN 48 69 69 GLN GLN B . n B 2 49 THR 49 70 70 THR THR B . n B 2 50 ASN 50 71 71 ASN ASN B . n B 2 51 CYS 51 72 72 CYS CYS B . n B 2 52 TYR 52 73 73 TYR TYR B . n B 2 53 GLN 53 74 74 GLN GLN B . n B 2 54 SER 54 75 75 SER SER B . n B 2 55 TYR 55 76 76 TYR TYR B . n B 2 56 SER 56 77 77 SER SER B . n B 2 57 THR 57 78 78 THR THR B . n B 2 58 MET 58 79 79 MET MET B . n B 2 59 SER 59 80 80 SER SER B . n B 2 60 ILE 60 81 81 ILE ILE B . n B 2 61 THR 61 82 82 THR THR B . n B 2 62 ASP 62 83 83 ASP ASP B . n B 2 63 CYS 63 84 84 CYS CYS B . n B 2 64 ARG 64 85 85 ARG ARG B . n B 2 65 GLU 65 86 86 GLU GLU B . n B 2 66 THR 66 87 87 THR THR B . n B 2 67 GLY 67 88 88 GLY GLY B . n B 2 68 SER 68 89 89 SER SER B . n B 2 69 SER 69 90 90 SER SER B . n B 2 70 LYS 70 91 91 LYS LYS B . n B 2 71 TYR 71 92 92 TYR TYR B . n B 2 72 PRO 72 93 93 PRO PRO B . n B 2 73 ASN 73 94 94 ASN ASN B . n B 2 74 CYS 74 95 95 CYS CYS B . n B 2 75 ALA 75 96 96 ALA ALA B . n B 2 76 TYR 76 97 97 TYR TYR B . n B 2 77 LYS 77 98 98 LYS LYS B . n B 2 78 THR 78 99 99 THR THR B . n B 2 79 THR 79 100 100 THR THR B . n B 2 80 GLN 80 101 101 GLN GLN B . n B 2 81 ALA 81 102 102 ALA ALA B . n B 2 82 ASN 82 103 103 ASN ASN B . n B 2 83 LYS 83 104 104 LYS LYS B . n B 2 84 HIS 84 105 105 HIS HIS B . n B 2 85 ILE 85 106 106 ILE ILE B . n B 2 86 ILE 86 107 107 ILE ILE B . n B 2 87 VAL 87 108 108 VAL VAL B . n B 2 88 ALA 88 109 109 ALA ALA B . n B 2 89 CYS 89 110 110 CYS CYS B . n B 2 90 GLU 90 111 111 GLU GLU B . n B 2 91 GLY 91 112 112 GLY GLY B . n B 2 92 ASN 92 113 113 ASN ASN B . n B 2 93 PRO 93 114 114 PRO PRO B . n B 2 94 TYR 94 115 115 TYR TYR B . n B 2 95 VAL 95 116 116 VAL VAL B . n B 2 96 PRO 96 117 117 PRO PRO B . n B 2 97 VAL 97 118 118 VAL VAL B . n B 2 98 HIS 98 119 119 HIS HIS B . n B 2 99 PHE 99 120 120 PHE PHE B . n B 2 100 ASP 100 121 121 ASP ASP B . n B 2 101 ALA 101 122 122 ALA ALA B . n B 2 102 SER 102 123 123 SER SER B . n B 2 103 VAL 103 124 124 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4Y8 1 101 1 4Y8 4Y8 b . D 4 SO4 1 201 1 SO4 SO4 B . E 4 SO4 1 202 2 SO4 SO4 B . F 5 HOH 1 201 13 HOH HOH b . F 5 HOH 2 202 6 HOH HOH b . F 5 HOH 3 203 34 HOH HOH b . F 5 HOH 4 204 65 HOH HOH b . F 5 HOH 5 205 21 HOH HOH b . F 5 HOH 6 206 36 HOH HOH b . F 5 HOH 7 207 64 HOH HOH b . F 5 HOH 8 208 75 HOH HOH b . F 5 HOH 9 209 33 HOH HOH b . F 5 HOH 10 210 7 HOH HOH b . F 5 HOH 11 211 38 HOH HOH b . F 5 HOH 12 212 71 HOH HOH b . F 5 HOH 13 213 4 HOH HOH b . F 5 HOH 14 214 53 HOH HOH b . F 5 HOH 15 215 70 HOH HOH b . G 5 HOH 1 301 18 HOH HOH B . G 5 HOH 2 302 49 HOH HOH B . G 5 HOH 3 303 26 HOH HOH B . G 5 HOH 4 304 63 HOH HOH B . G 5 HOH 5 305 28 HOH HOH B . G 5 HOH 6 306 1 HOH HOH B . G 5 HOH 7 307 8 HOH HOH B . G 5 HOH 8 308 19 HOH HOH B . G 5 HOH 9 309 35 HOH HOH B . G 5 HOH 10 310 57 HOH HOH B . G 5 HOH 11 311 20 HOH HOH B . G 5 HOH 12 312 66 HOH HOH B . G 5 HOH 13 313 24 HOH HOH B . G 5 HOH 14 314 23 HOH HOH B . G 5 HOH 15 315 11 HOH HOH B . G 5 HOH 16 316 76 HOH HOH B . G 5 HOH 17 317 48 HOH HOH B . G 5 HOH 18 318 61 HOH HOH B . G 5 HOH 19 319 45 HOH HOH B . G 5 HOH 20 320 44 HOH HOH B . G 5 HOH 21 321 32 HOH HOH B . G 5 HOH 22 322 31 HOH HOH B . G 5 HOH 23 323 81 HOH HOH B . G 5 HOH 24 324 67 HOH HOH B . G 5 HOH 25 325 73 HOH HOH B . G 5 HOH 26 326 74 HOH HOH B . G 5 HOH 27 327 37 HOH HOH B . G 5 HOH 28 328 3 HOH HOH B . G 5 HOH 29 329 5 HOH HOH B . G 5 HOH 30 330 9 HOH HOH B . G 5 HOH 31 331 10 HOH HOH B . G 5 HOH 32 332 12 HOH HOH B . G 5 HOH 33 333 14 HOH HOH B . G 5 HOH 34 334 15 HOH HOH B . G 5 HOH 35 335 16 HOH HOH B . G 5 HOH 36 336 17 HOH HOH B . G 5 HOH 37 337 22 HOH HOH B . G 5 HOH 38 338 25 HOH HOH B . G 5 HOH 39 339 27 HOH HOH B . G 5 HOH 40 340 29 HOH HOH B . G 5 HOH 41 341 30 HOH HOH B . G 5 HOH 42 342 39 HOH HOH B . G 5 HOH 43 343 40 HOH HOH B . G 5 HOH 44 344 41 HOH HOH B . G 5 HOH 45 345 42 HOH HOH B . G 5 HOH 46 346 43 HOH HOH B . G 5 HOH 47 347 47 HOH HOH B . G 5 HOH 48 348 51 HOH HOH B . G 5 HOH 49 349 54 HOH HOH B . G 5 HOH 50 350 56 HOH HOH B . G 5 HOH 51 351 58 HOH HOH B . G 5 HOH 52 352 59 HOH HOH B . G 5 HOH 53 353 60 HOH HOH B . G 5 HOH 54 354 62 HOH HOH B . G 5 HOH 55 355 68 HOH HOH B . G 5 HOH 56 356 69 HOH HOH B . G 5 HOH 57 357 72 HOH HOH B . G 5 HOH 58 358 77 HOH HOH B . G 5 HOH 59 359 78 HOH HOH B . G 5 HOH 60 360 79 HOH HOH B . G 5 HOH 61 361 80 HOH HOH B . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 22 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id SER _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OG # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.9_1692)' 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4YGW _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.562 _cell.length_a_esd ? _cell.length_b 87.108 _cell.length_b_esd ? _cell.length_c 45.420 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YGW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium citrate, pH 5.5, 27.5% PEG4000, 0.06 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-01-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97950 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YGW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.18 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5835 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.9 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.099 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.18 _reflns_shell.d_res_low 2.22 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 58.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.372 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YGW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.18 _refine.ls_d_res_low 40.274 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5804 _refine.ls_number_reflns_R_free 290 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.24 _refine.ls_percent_reflns_R_free 5.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2023 _refine.ls_R_factor_R_free 0.2188 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2014 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3OQY _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.42 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.10 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 917 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 1007 _refine_hist.d_res_high 2.18 _refine_hist.d_res_low 40.274 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 983 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.649 ? 1330 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.733 ? 368 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.025 ? 144 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 173 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.18 2.7413 . . 129 2457 84.00 . . . 0.2492 . 0.2321 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7413 40.2808 . . 161 3057 99.00 . . . 0.2089 . 0.1913 . . . . . . . . . . # _struct.entry_id 4YGW _struct.title 'RNase S in complex with stabilized S peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YGW _struct_keywords.text 'Rnase, unnatural amino acids, side chain link, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4YGW 4YGW ? 1 ? 1 2 UNP W0UVI3_BOVIN W0UVI3 ? 2 ;SSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQ ANKHIIVACEGNPYVPVHFDASV ; 113 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YGW b 1 ? 16 ? 4YGW 1 ? 16 ? 1 16 2 2 4YGW B 1 ? 103 ? W0UVI3 113 ? 215 ? 22 124 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1740 ? 1 MORE -30 ? 1 'SSA (A^2)' 6970 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 4 ? MET A 14 ? THR b 4 MET b 14 1 ? 11 HELX_P HELX_P2 AA2 ASN B 3 ? ARG B 12 ? ASN B 24 ARG B 33 1 ? 10 HELX_P HELX_P3 AA3 SER B 29 ? ALA B 35 ? SER B 50 ALA B 56 1 ? 7 HELX_P HELX_P4 AA4 VAL B 36 ? GLN B 39 ? VAL B 57 GLN B 60 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 63 SG ? ? B CYS 26 B CYS 84 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 19 SG ? ? ? 1_555 B CYS 74 SG ? ? B CYS 40 B CYS 95 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? B CYS 37 SG ? ? ? 1_555 B CYS 89 SG ? ? B CYS 58 B CYS 110 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf4 disulf ? ? B CYS 44 SG ? ? ? 1_555 B CYS 51 SG ? ? B CYS 65 B CYS 72 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale both ? A ACE 1 C ? ? ? 1_555 A LYS 2 N ? ? b ACE 1 b LYS 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A ALA 6 C ? ? ? 1_555 A HCS 7 N ? ? b ALA 6 b HCS 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A HCS 7 C ? ? ? 1_555 A LYS 8 N ? ? b HCS 7 b LYS 8 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale none ? A HCS 7 SD ? ? ? 1_555 C 4Y8 . CM2 ? ? b HCS 7 b 4Y8 101 1_555 ? ? ? ? ? ? ? 1.816 ? ? covale5 covale both ? A GLU 10 C ? ? ? 1_555 A HCS 11 N ? ? b GLU 10 b HCS 11 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A HCS 11 C ? ? ? 1_555 A GLN 12 N ? ? b HCS 11 b GLN 12 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale one ? A HCS 11 SD ? ? ? 1_555 C 4Y8 . CM1 ? ? b HCS 11 b 4Y8 101 1_555 ? ? ? ? ? ? ? 1.699 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 71 B . ? TYR 92 B PRO 72 B ? PRO 93 B 1 3.65 2 ASN 92 B . ? ASN 113 B PRO 93 B ? PRO 114 B 1 5.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL B 22 ? VAL B 26 ? VAL B 43 VAL B 47 AA1 2 MET B 58 ? GLU B 65 ? MET B 79 GLU B 86 AA1 3 TYR B 76 ? LYS B 83 ? TYR B 97 LYS B 104 AA2 1 LYS B 40 ? VAL B 42 ? LYS B 61 VAL B 63 AA2 2 CYS B 51 ? GLN B 53 ? CYS B 72 GLN B 74 AA2 3 ILE B 85 ? GLU B 90 ? ILE B 106 GLU B 111 AA2 4 VAL B 95 ? SER B 102 ? VAL B 116 SER B 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE B 25 ? N PHE B 46 O THR B 61 ? O THR B 82 AA1 2 3 N ASP B 62 ? N ASP B 83 O THR B 79 ? O THR B 100 AA2 1 2 N LYS B 40 ? N LYS B 61 O GLN B 53 ? O GLN B 74 AA2 2 3 N TYR B 52 ? N TYR B 73 O VAL B 87 ? O VAL B 108 AA2 3 4 N ILE B 86 ? N ILE B 107 O ALA B 101 ? O ALA B 122 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 201 ? 7 'binding site for residue SO4 B 201' AC2 Software B SO4 202 ? 3 'binding site for residue SO4 B 202' AC3 Software b 4Y8 101 ? 9 'binding site for residues 4Y8 b 101 and HCS b 11' AC4 Software b 4Y8 101 ? 8 'binding site for residues 4Y8 b 101 and HCS b 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 LYS B 20 ? LYS B 41 . ? 1_555 ? 2 AC1 7 SER B 38 ? SER B 59 . ? 2_455 ? 3 AC1 7 HIS B 98 ? HIS B 119 . ? 1_555 ? 4 AC1 7 PHE B 99 ? PHE B 120 . ? 1_555 ? 5 AC1 7 GLN A 12 ? GLN b 12 . ? 1_555 ? 6 AC1 7 HIS A 13 ? HIS b 13 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH b 203 . ? 1_555 ? 8 AC2 3 LYS B 10 ? LYS B 31 . ? 4_446 ? 9 AC2 3 THR B 66 ? THR B 87 . ? 1_555 ? 10 AC2 3 GLY B 67 ? GLY B 88 . ? 1_555 ? 11 AC3 9 ARG B 12 ? ARG B 33 . ? 1_555 ? 12 AC3 9 GLY B 47 ? GLY B 68 . ? 1_655 ? 13 AC3 9 GLU A 3 ? GLU b 3 . ? 1_555 ? 14 AC3 9 HCS A 7 ? HCS b 7 . ? 1_555 ? 15 AC3 9 LYS A 8 ? LYS b 8 . ? 1_555 ? 16 AC3 9 PHE A 9 ? PHE b 9 . ? 1_555 ? 17 AC3 9 GLU A 10 ? GLU b 10 . ? 1_555 ? 18 AC3 9 GLN A 12 ? GLN b 12 . ? 1_555 ? 19 AC3 9 HIS A 13 ? HIS b 13 . ? 1_555 ? 20 AC4 8 GLU A 3 ? GLU b 3 . ? 1_555 ? 21 AC4 8 THR A 4 ? THR b 4 . ? 1_555 ? 22 AC4 8 ALA A 5 ? ALA b 5 . ? 1_555 ? 23 AC4 8 ALA A 6 ? ALA b 6 . ? 1_555 ? 24 AC4 8 LYS A 8 ? LYS b 8 . ? 1_555 ? 25 AC4 8 PHE A 9 ? PHE b 9 . ? 1_555 ? 26 AC4 8 GLU A 10 ? GLU b 10 . ? 1_555 ? 27 AC4 8 HCS A 11 ? HCS b 11 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP b 15 ? ? -157.33 71.25 2 1 GLN B 60 ? ? -116.83 -150.53 3 1 ASN B 94 ? ? -101.02 76.47 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4Y8 O O N N 1 4Y8 C C N N 2 4Y8 CM2 C N N 3 4Y8 CM1 C N N 4 4Y8 O1 O N N 5 4Y8 H1 H N N 6 4Y8 H2 H N N 7 4Y8 H3 H N N 8 4Y8 H4 H N N 9 4Y8 H5 H N N 10 4Y8 H6 H N N 11 ACE C C N N 12 ACE O O N N 13 ACE CH3 C N N 14 ACE H H N N 15 ACE H1 H N N 16 ACE H2 H N N 17 ACE H3 H N N 18 ALA N N N N 19 ALA CA C N S 20 ALA C C N N 21 ALA O O N N 22 ALA CB C N N 23 ALA OXT O N N 24 ALA H H N N 25 ALA H2 H N N 26 ALA HA H N N 27 ALA HB1 H N N 28 ALA HB2 H N N 29 ALA HB3 H N N 30 ALA HXT H N N 31 ARG N N N N 32 ARG CA C N S 33 ARG C C N N 34 ARG O O N N 35 ARG CB C N N 36 ARG CG C N N 37 ARG CD C N N 38 ARG NE N N N 39 ARG CZ C N N 40 ARG NH1 N N N 41 ARG NH2 N N N 42 ARG OXT O N N 43 ARG H H N N 44 ARG H2 H N N 45 ARG HA H N N 46 ARG HB2 H N N 47 ARG HB3 H N N 48 ARG HG2 H N N 49 ARG HG3 H N N 50 ARG HD2 H N N 51 ARG HD3 H N N 52 ARG HE H N N 53 ARG HH11 H N N 54 ARG HH12 H N N 55 ARG HH21 H N N 56 ARG HH22 H N N 57 ARG HXT H N N 58 ASN N N N N 59 ASN CA C N S 60 ASN C C N N 61 ASN O O N N 62 ASN CB C N N 63 ASN CG C N N 64 ASN OD1 O N N 65 ASN ND2 N N N 66 ASN OXT O N N 67 ASN H H N N 68 ASN H2 H N N 69 ASN HA H N N 70 ASN HB2 H N N 71 ASN HB3 H N N 72 ASN HD21 H N N 73 ASN HD22 H N N 74 ASN HXT H N N 75 ASP N N N N 76 ASP CA C N S 77 ASP C C N N 78 ASP O O N N 79 ASP CB C N N 80 ASP CG C N N 81 ASP OD1 O N N 82 ASP OD2 O N N 83 ASP OXT O N N 84 ASP H H N N 85 ASP H2 H N N 86 ASP HA H N N 87 ASP HB2 H N N 88 ASP HB3 H N N 89 ASP HD2 H N N 90 ASP HXT H N N 91 CYS N N N N 92 CYS CA C N R 93 CYS C C N N 94 CYS O O N N 95 CYS CB C N N 96 CYS SG S N N 97 CYS OXT O N N 98 CYS H H N N 99 CYS H2 H N N 100 CYS HA H N N 101 CYS HB2 H N N 102 CYS HB3 H N N 103 CYS HG H N N 104 CYS HXT H N N 105 GLN N N N N 106 GLN CA C N S 107 GLN C C N N 108 GLN O O N N 109 GLN CB C N N 110 GLN CG C N N 111 GLN CD C N N 112 GLN OE1 O N N 113 GLN NE2 N N N 114 GLN OXT O N N 115 GLN H H N N 116 GLN H2 H N N 117 GLN HA H N N 118 GLN HB2 H N N 119 GLN HB3 H N N 120 GLN HG2 H N N 121 GLN HG3 H N N 122 GLN HE21 H N N 123 GLN HE22 H N N 124 GLN HXT H N N 125 GLU N N N N 126 GLU CA C N S 127 GLU C C N N 128 GLU O O N N 129 GLU CB C N N 130 GLU CG C N N 131 GLU CD C N N 132 GLU OE1 O N N 133 GLU OE2 O N N 134 GLU OXT O N N 135 GLU H H N N 136 GLU H2 H N N 137 GLU HA H N N 138 GLU HB2 H N N 139 GLU HB3 H N N 140 GLU HG2 H N N 141 GLU HG3 H N N 142 GLU HE2 H N N 143 GLU HXT H N N 144 GLY N N N N 145 GLY CA C N N 146 GLY C C N N 147 GLY O O N N 148 GLY OXT O N N 149 GLY H H N N 150 GLY H2 H N N 151 GLY HA2 H N N 152 GLY HA3 H N N 153 GLY HXT H N N 154 HCS N N N N 155 HCS CA C N S 156 HCS CB C N N 157 HCS CG C N N 158 HCS SD S N N 159 HCS C C N N 160 HCS OXT O N N 161 HCS O O N N 162 HCS H H N N 163 HCS H2 H N N 164 HCS HA H N N 165 HCS HB2 H N N 166 HCS HB3 H N N 167 HCS HG2 H N N 168 HCS HG3 H N N 169 HCS HD H N N 170 HCS HXT H N N 171 HIS N N N N 172 HIS CA C N S 173 HIS C C N N 174 HIS O O N N 175 HIS CB C N N 176 HIS CG C Y N 177 HIS ND1 N Y N 178 HIS CD2 C Y N 179 HIS CE1 C Y N 180 HIS NE2 N Y N 181 HIS OXT O N N 182 HIS H H N N 183 HIS H2 H N N 184 HIS HA H N N 185 HIS HB2 H N N 186 HIS HB3 H N N 187 HIS HD1 H N N 188 HIS HD2 H N N 189 HIS HE1 H N N 190 HIS HE2 H N N 191 HIS HXT H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 ILE N N N N 196 ILE CA C N S 197 ILE C C N N 198 ILE O O N N 199 ILE CB C N S 200 ILE CG1 C N N 201 ILE CG2 C N N 202 ILE CD1 C N N 203 ILE OXT O N N 204 ILE H H N N 205 ILE H2 H N N 206 ILE HA H N N 207 ILE HB H N N 208 ILE HG12 H N N 209 ILE HG13 H N N 210 ILE HG21 H N N 211 ILE HG22 H N N 212 ILE HG23 H N N 213 ILE HD11 H N N 214 ILE HD12 H N N 215 ILE HD13 H N N 216 ILE HXT H N N 217 LEU N N N N 218 LEU CA C N S 219 LEU C C N N 220 LEU O O N N 221 LEU CB C N N 222 LEU CG C N N 223 LEU CD1 C N N 224 LEU CD2 C N N 225 LEU OXT O N N 226 LEU H H N N 227 LEU H2 H N N 228 LEU HA H N N 229 LEU HB2 H N N 230 LEU HB3 H N N 231 LEU HG H N N 232 LEU HD11 H N N 233 LEU HD12 H N N 234 LEU HD13 H N N 235 LEU HD21 H N N 236 LEU HD22 H N N 237 LEU HD23 H N N 238 LEU HXT H N N 239 LYS N N N N 240 LYS CA C N S 241 LYS C C N N 242 LYS O O N N 243 LYS CB C N N 244 LYS CG C N N 245 LYS CD C N N 246 LYS CE C N N 247 LYS NZ N N N 248 LYS OXT O N N 249 LYS H H N N 250 LYS H2 H N N 251 LYS HA H N N 252 LYS HB2 H N N 253 LYS HB3 H N N 254 LYS HG2 H N N 255 LYS HG3 H N N 256 LYS HD2 H N N 257 LYS HD3 H N N 258 LYS HE2 H N N 259 LYS HE3 H N N 260 LYS HZ1 H N N 261 LYS HZ2 H N N 262 LYS HZ3 H N N 263 LYS HXT H N N 264 MET N N N N 265 MET CA C N S 266 MET C C N N 267 MET O O N N 268 MET CB C N N 269 MET CG C N N 270 MET SD S N N 271 MET CE C N N 272 MET OXT O N N 273 MET H H N N 274 MET H2 H N N 275 MET HA H N N 276 MET HB2 H N N 277 MET HB3 H N N 278 MET HG2 H N N 279 MET HG3 H N N 280 MET HE1 H N N 281 MET HE2 H N N 282 MET HE3 H N N 283 MET HXT H N N 284 PHE N N N N 285 PHE CA C N S 286 PHE C C N N 287 PHE O O N N 288 PHE CB C N N 289 PHE CG C Y N 290 PHE CD1 C Y N 291 PHE CD2 C Y N 292 PHE CE1 C Y N 293 PHE CE2 C Y N 294 PHE CZ C Y N 295 PHE OXT O N N 296 PHE H H N N 297 PHE H2 H N N 298 PHE HA H N N 299 PHE HB2 H N N 300 PHE HB3 H N N 301 PHE HD1 H N N 302 PHE HD2 H N N 303 PHE HE1 H N N 304 PHE HE2 H N N 305 PHE HZ H N N 306 PHE HXT H N N 307 PRO N N N N 308 PRO CA C N S 309 PRO C C N N 310 PRO O O N N 311 PRO CB C N N 312 PRO CG C N N 313 PRO CD C N N 314 PRO OXT O N N 315 PRO H H N N 316 PRO HA H N N 317 PRO HB2 H N N 318 PRO HB3 H N N 319 PRO HG2 H N N 320 PRO HG3 H N N 321 PRO HD2 H N N 322 PRO HD3 H N N 323 PRO HXT H N N 324 SER N N N N 325 SER CA C N S 326 SER C C N N 327 SER O O N N 328 SER CB C N N 329 SER OG O N N 330 SER OXT O N N 331 SER H H N N 332 SER H2 H N N 333 SER HA H N N 334 SER HB2 H N N 335 SER HB3 H N N 336 SER HG H N N 337 SER HXT H N N 338 SO4 S S N N 339 SO4 O1 O N N 340 SO4 O2 O N N 341 SO4 O3 O N N 342 SO4 O4 O N N 343 THR N N N N 344 THR CA C N S 345 THR C C N N 346 THR O O N N 347 THR CB C N R 348 THR OG1 O N N 349 THR CG2 C N N 350 THR OXT O N N 351 THR H H N N 352 THR H2 H N N 353 THR HA H N N 354 THR HB H N N 355 THR HG1 H N N 356 THR HG21 H N N 357 THR HG22 H N N 358 THR HG23 H N N 359 THR HXT H N N 360 TYR N N N N 361 TYR CA C N S 362 TYR C C N N 363 TYR O O N N 364 TYR CB C N N 365 TYR CG C Y N 366 TYR CD1 C Y N 367 TYR CD2 C Y N 368 TYR CE1 C Y N 369 TYR CE2 C Y N 370 TYR CZ C Y N 371 TYR OH O N N 372 TYR OXT O N N 373 TYR H H N N 374 TYR H2 H N N 375 TYR HA H N N 376 TYR HB2 H N N 377 TYR HB3 H N N 378 TYR HD1 H N N 379 TYR HD2 H N N 380 TYR HE1 H N N 381 TYR HE2 H N N 382 TYR HH H N N 383 TYR HXT H N N 384 VAL N N N N 385 VAL CA C N S 386 VAL C C N N 387 VAL O O N N 388 VAL CB C N N 389 VAL CG1 C N N 390 VAL CG2 C N N 391 VAL OXT O N N 392 VAL H H N N 393 VAL H2 H N N 394 VAL HA H N N 395 VAL HB H N N 396 VAL HG11 H N N 397 VAL HG12 H N N 398 VAL HG13 H N N 399 VAL HG21 H N N 400 VAL HG22 H N N 401 VAL HG23 H N N 402 VAL HXT H N N 403 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4Y8 O C doub N N 1 4Y8 C CM2 sing N N 2 4Y8 C CM1 sing N N 3 4Y8 CM1 O1 sing N N 4 4Y8 CM2 H1 sing N N 5 4Y8 CM2 H2 sing N N 6 4Y8 CM2 H3 sing N N 7 4Y8 CM1 H4 sing N N 8 4Y8 CM1 H5 sing N N 9 4Y8 O1 H6 sing N N 10 ACE C O doub N N 11 ACE C CH3 sing N N 12 ACE C H sing N N 13 ACE CH3 H1 sing N N 14 ACE CH3 H2 sing N N 15 ACE CH3 H3 sing N N 16 ALA N CA sing N N 17 ALA N H sing N N 18 ALA N H2 sing N N 19 ALA CA C sing N N 20 ALA CA CB sing N N 21 ALA CA HA sing N N 22 ALA C O doub N N 23 ALA C OXT sing N N 24 ALA CB HB1 sing N N 25 ALA CB HB2 sing N N 26 ALA CB HB3 sing N N 27 ALA OXT HXT sing N N 28 ARG N CA sing N N 29 ARG N H sing N N 30 ARG N H2 sing N N 31 ARG CA C sing N N 32 ARG CA CB sing N N 33 ARG CA HA sing N N 34 ARG C O doub N N 35 ARG C OXT sing N N 36 ARG CB CG sing N N 37 ARG CB HB2 sing N N 38 ARG CB HB3 sing N N 39 ARG CG CD sing N N 40 ARG CG HG2 sing N N 41 ARG CG HG3 sing N N 42 ARG CD NE sing N N 43 ARG CD HD2 sing N N 44 ARG CD HD3 sing N N 45 ARG NE CZ sing N N 46 ARG NE HE sing N N 47 ARG CZ NH1 sing N N 48 ARG CZ NH2 doub N N 49 ARG NH1 HH11 sing N N 50 ARG NH1 HH12 sing N N 51 ARG NH2 HH21 sing N N 52 ARG NH2 HH22 sing N N 53 ARG OXT HXT sing N N 54 ASN N CA sing N N 55 ASN N H sing N N 56 ASN N H2 sing N N 57 ASN CA C sing N N 58 ASN CA CB sing N N 59 ASN CA HA sing N N 60 ASN C O doub N N 61 ASN C OXT sing N N 62 ASN CB CG sing N N 63 ASN CB HB2 sing N N 64 ASN CB HB3 sing N N 65 ASN CG OD1 doub N N 66 ASN CG ND2 sing N N 67 ASN ND2 HD21 sing N N 68 ASN ND2 HD22 sing N N 69 ASN OXT HXT sing N N 70 ASP N CA sing N N 71 ASP N H sing N N 72 ASP N H2 sing N N 73 ASP CA C sing N N 74 ASP CA CB sing N N 75 ASP CA HA sing N N 76 ASP C O doub N N 77 ASP C OXT sing N N 78 ASP CB CG sing N N 79 ASP CB HB2 sing N N 80 ASP CB HB3 sing N N 81 ASP CG OD1 doub N N 82 ASP CG OD2 sing N N 83 ASP OD2 HD2 sing N N 84 ASP OXT HXT sing N N 85 CYS N CA sing N N 86 CYS N H sing N N 87 CYS N H2 sing N N 88 CYS CA C sing N N 89 CYS CA CB sing N N 90 CYS CA HA sing N N 91 CYS C O doub N N 92 CYS C OXT sing N N 93 CYS CB SG sing N N 94 CYS CB HB2 sing N N 95 CYS CB HB3 sing N N 96 CYS SG HG sing N N 97 CYS OXT HXT sing N N 98 GLN N CA sing N N 99 GLN N H sing N N 100 GLN N H2 sing N N 101 GLN CA C sing N N 102 GLN CA CB sing N N 103 GLN CA HA sing N N 104 GLN C O doub N N 105 GLN C OXT sing N N 106 GLN CB CG sing N N 107 GLN CB HB2 sing N N 108 GLN CB HB3 sing N N 109 GLN CG CD sing N N 110 GLN CG HG2 sing N N 111 GLN CG HG3 sing N N 112 GLN CD OE1 doub N N 113 GLN CD NE2 sing N N 114 GLN NE2 HE21 sing N N 115 GLN NE2 HE22 sing N N 116 GLN OXT HXT sing N N 117 GLU N CA sing N N 118 GLU N H sing N N 119 GLU N H2 sing N N 120 GLU CA C sing N N 121 GLU CA CB sing N N 122 GLU CA HA sing N N 123 GLU C O doub N N 124 GLU C OXT sing N N 125 GLU CB CG sing N N 126 GLU CB HB2 sing N N 127 GLU CB HB3 sing N N 128 GLU CG CD sing N N 129 GLU CG HG2 sing N N 130 GLU CG HG3 sing N N 131 GLU CD OE1 doub N N 132 GLU CD OE2 sing N N 133 GLU OE2 HE2 sing N N 134 GLU OXT HXT sing N N 135 GLY N CA sing N N 136 GLY N H sing N N 137 GLY N H2 sing N N 138 GLY CA C sing N N 139 GLY CA HA2 sing N N 140 GLY CA HA3 sing N N 141 GLY C O doub N N 142 GLY C OXT sing N N 143 GLY OXT HXT sing N N 144 HCS N CA sing N N 145 HCS N H sing N N 146 HCS N H2 sing N N 147 HCS CA CB sing N N 148 HCS CA C sing N N 149 HCS CA HA sing N N 150 HCS CB CG sing N N 151 HCS CB HB2 sing N N 152 HCS CB HB3 sing N N 153 HCS CG SD sing N N 154 HCS CG HG2 sing N N 155 HCS CG HG3 sing N N 156 HCS SD HD sing N N 157 HCS C OXT sing N N 158 HCS C O doub N N 159 HCS OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 SO4 S O1 doub N N 322 SO4 S O2 doub N N 323 SO4 S O3 sing N N 324 SO4 S O4 sing N N 325 THR N CA sing N N 326 THR N H sing N N 327 THR N H2 sing N N 328 THR CA C sing N N 329 THR CA CB sing N N 330 THR CA HA sing N N 331 THR C O doub N N 332 THR C OXT sing N N 333 THR CB OG1 sing N N 334 THR CB CG2 sing N N 335 THR CB HB sing N N 336 THR OG1 HG1 sing N N 337 THR CG2 HG21 sing N N 338 THR CG2 HG22 sing N N 339 THR CG2 HG23 sing N N 340 THR OXT HXT sing N N 341 TYR N CA sing N N 342 TYR N H sing N N 343 TYR N H2 sing N N 344 TYR CA C sing N N 345 TYR CA CB sing N N 346 TYR CA HA sing N N 347 TYR C O doub N N 348 TYR C OXT sing N N 349 TYR CB CG sing N N 350 TYR CB HB2 sing N N 351 TYR CB HB3 sing N N 352 TYR CG CD1 doub Y N 353 TYR CG CD2 sing Y N 354 TYR CD1 CE1 sing Y N 355 TYR CD1 HD1 sing N N 356 TYR CD2 CE2 doub Y N 357 TYR CD2 HD2 sing N N 358 TYR CE1 CZ doub Y N 359 TYR CE1 HE1 sing N N 360 TYR CE2 CZ sing Y N 361 TYR CE2 HE2 sing N N 362 TYR CZ OH sing N N 363 TYR OH HH sing N N 364 TYR OXT HXT sing N N 365 VAL N CA sing N N 366 VAL N H sing N N 367 VAL N H2 sing N N 368 VAL CA C sing N N 369 VAL CA CB sing N N 370 VAL CA HA sing N N 371 VAL C O doub N N 372 VAL C OXT sing N N 373 VAL CB CG1 sing N N 374 VAL CB CG2 sing N N 375 VAL CB HB sing N N 376 VAL CG1 HG11 sing N N 377 VAL CG1 HG12 sing N N 378 VAL CG1 HG13 sing N N 379 VAL CG2 HG21 sing N N 380 VAL CG2 HG22 sing N N 381 VAL CG2 HG23 sing N N 382 VAL OXT HXT sing N N 383 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3OQY _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 4YGW _atom_sites.fract_transf_matrix[1][1] 0.035012 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011480 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022017 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_