data_4YOD # _entry.id 4YOD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YOD pdb_00004yod 10.2210/pdb4yod/pdb WWPDB D_1000207832 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.details . _pdbx_database_related.db_id JCSG-419026 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YOD _pdbx_database_status.recvd_initial_deposition_date 2015-03-11 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae ATCC 43185 at 1.90 A resolution' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 97.420 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 4YOD _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.210 _cell.length_a_esd ? _cell.length_b 45.420 _cell.length_b_esd ? _cell.length_c 70.670 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'thioredoxin-like protein' 33449.629 1 ? ? ? ? 2 water nat water 18.015 197 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQTKNEVSQDTIKTFTLPAIPQI(MSE)VAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQ EAIRKTIDRTNVDKKVFAYITDLADKYLYDPNSP(MSE)RNEEFYIPVLEA(MSE)AASPVLEEIEKVRPKARLELAQKN RIGTKAINFTYTLASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKH LNEFPKEWINGYDKKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYL(MSE)IHQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GQTKNEVSQDTIKTFTLPAIPQIMVAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQEAIR KTIDRTNVDKKVFAYITDLADKYLYDPNSPMRNEEFYIPVLEAMAASPVLEEIEKVRPKARLELAQKNRIGTKAINFTYT LASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKHLNEFPKEWINGY DKKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYLMIHQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-419026 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 THR n 1 4 LYS n 1 5 ASN n 1 6 GLU n 1 7 VAL n 1 8 SER n 1 9 GLN n 1 10 ASP n 1 11 THR n 1 12 ILE n 1 13 LYS n 1 14 THR n 1 15 PHE n 1 16 THR n 1 17 LEU n 1 18 PRO n 1 19 ALA n 1 20 ILE n 1 21 PRO n 1 22 GLN n 1 23 ILE n 1 24 MSE n 1 25 VAL n 1 26 ALA n 1 27 PRO n 1 28 GLU n 1 29 GLN n 1 30 ARG n 1 31 ALA n 1 32 GLU n 1 33 PHE n 1 34 LEU n 1 35 VAL n 1 36 LYS n 1 37 HIS n 1 38 TYR n 1 39 TRP n 1 40 ASP n 1 41 ASN n 1 42 VAL n 1 43 ASN n 1 44 PHE n 1 45 ALA n 1 46 ASP n 1 47 THR n 1 48 ASN n 1 49 TYR n 1 50 ILE n 1 51 HIS n 1 52 HIS n 1 53 PRO n 1 54 GLU n 1 55 ILE n 1 56 THR n 1 57 GLU n 1 58 GLN n 1 59 ALA n 1 60 TRP n 1 61 VAL n 1 62 ASP n 1 63 TYR n 1 64 CYS n 1 65 ASP n 1 66 ILE n 1 67 LEU n 1 68 ASN n 1 69 HIS n 1 70 VAL n 1 71 PRO n 1 72 LEU n 1 73 LYS n 1 74 THR n 1 75 ALA n 1 76 GLN n 1 77 GLU n 1 78 ALA n 1 79 ILE n 1 80 ARG n 1 81 LYS n 1 82 THR n 1 83 ILE n 1 84 ASP n 1 85 ARG n 1 86 THR n 1 87 ASN n 1 88 VAL n 1 89 ASP n 1 90 LYS n 1 91 LYS n 1 92 VAL n 1 93 PHE n 1 94 ALA n 1 95 TYR n 1 96 ILE n 1 97 THR n 1 98 ASP n 1 99 LEU n 1 100 ALA n 1 101 ASP n 1 102 LYS n 1 103 TYR n 1 104 LEU n 1 105 TYR n 1 106 ASP n 1 107 PRO n 1 108 ASN n 1 109 SER n 1 110 PRO n 1 111 MSE n 1 112 ARG n 1 113 ASN n 1 114 GLU n 1 115 GLU n 1 116 PHE n 1 117 TYR n 1 118 ILE n 1 119 PRO n 1 120 VAL n 1 121 LEU n 1 122 GLU n 1 123 ALA n 1 124 MSE n 1 125 ALA n 1 126 ALA n 1 127 SER n 1 128 PRO n 1 129 VAL n 1 130 LEU n 1 131 GLU n 1 132 GLU n 1 133 ILE n 1 134 GLU n 1 135 LYS n 1 136 VAL n 1 137 ARG n 1 138 PRO n 1 139 LYS n 1 140 ALA n 1 141 ARG n 1 142 LEU n 1 143 GLU n 1 144 LEU n 1 145 ALA n 1 146 GLN n 1 147 LYS n 1 148 ASN n 1 149 ARG n 1 150 ILE n 1 151 GLY n 1 152 THR n 1 153 LYS n 1 154 ALA n 1 155 ILE n 1 156 ASN n 1 157 PHE n 1 158 THR n 1 159 TYR n 1 160 THR n 1 161 LEU n 1 162 ALA n 1 163 SER n 1 164 GLY n 1 165 ALA n 1 166 GLN n 1 167 GLY n 1 168 SER n 1 169 LEU n 1 170 TYR n 1 171 GLN n 1 172 LEU n 1 173 ASN n 1 174 ALA n 1 175 ASP n 1 176 TYR n 1 177 LEU n 1 178 LEU n 1 179 LEU n 1 180 PHE n 1 181 ILE n 1 182 ASN n 1 183 ASN n 1 184 PRO n 1 185 GLY n 1 186 CYS n 1 187 HIS n 1 188 ALA n 1 189 CYS n 1 190 THR n 1 191 GLU n 1 192 THR n 1 193 ILE n 1 194 GLU n 1 195 GLY n 1 196 LEU n 1 197 LYS n 1 198 GLN n 1 199 ALA n 1 200 PRO n 1 201 ILE n 1 202 ILE n 1 203 SER n 1 204 GLN n 1 205 LEU n 1 206 ILE n 1 207 LYS n 1 208 GLU n 1 209 LYS n 1 210 LYS n 1 211 LEU n 1 212 ILE n 1 213 VAL n 1 214 LEU n 1 215 SER n 1 216 ILE n 1 217 TYR n 1 218 PRO n 1 219 ASP n 1 220 GLU n 1 221 GLU n 1 222 LEU n 1 223 ASP n 1 224 ASP n 1 225 TRP n 1 226 ARG n 1 227 LYS n 1 228 HIS n 1 229 LEU n 1 230 ASN n 1 231 GLU n 1 232 PHE n 1 233 PRO n 1 234 LYS n 1 235 GLU n 1 236 TRP n 1 237 ILE n 1 238 ASN n 1 239 GLY n 1 240 TYR n 1 241 ASP n 1 242 LYS n 1 243 LYS n 1 244 PHE n 1 245 THR n 1 246 ILE n 1 247 LYS n 1 248 GLU n 1 249 LYS n 1 250 GLN n 1 251 LEU n 1 252 TYR n 1 253 ASP n 1 254 LEU n 1 255 LYS n 1 256 ALA n 1 257 ILE n 1 258 PRO n 1 259 THR n 1 260 LEU n 1 261 TYR n 1 262 LEU n 1 263 LEU n 1 264 ASN n 1 265 LYS n 1 266 GLU n 1 267 LYS n 1 268 THR n 1 269 VAL n 1 270 LEU n 1 271 LEU n 1 272 LYS n 1 273 ASP n 1 274 ALA n 1 275 THR n 1 276 THR n 1 277 GLN n 1 278 ALA n 1 279 ILE n 1 280 GLU n 1 281 GLU n 1 282 TYR n 1 283 LEU n 1 284 MSE n 1 285 ILE n 1 286 HIS n 1 287 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 287 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACCAC_02376 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides caccae ATCC 43185' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411901 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5ZHK4_9BACE _struct_ref.pdbx_db_accession A5ZHK4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QTKNEVSQDTIKTFTLPAIPQIMVAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQEAIRK TIDRTNVDKKVFAYITDLADKYLYDPNSPMRNEEFYIPVLEAMAASPVLEEIEKVRPKARLELAQKNRIGTKAINFTYTL ASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKHLNEFPKEWINGYD KKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYLMIHQ ; _struct_ref.pdbx_align_begin 27 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4YOD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 287 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5ZHK4 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 312 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 312 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4YOD _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A5ZHK4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YOD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% polyethylene glycol 6000, 0.1M Bicine pH 9.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-01-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9184 1.0 2 0.9796 1.0 3 0.9795 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9184,0.9796,0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 34.007 _reflns.entry_id 4YOD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 28.343 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22102 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 91.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.998 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.77 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.056 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 72712 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.910 1.980 ? 2.0 ? 6856 4556 ? 4056 89.000 ? ? 0.783 ? 0.505 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.702 ? ? 1 1 ? ? 1.980 2.060 ? 3.0 ? 7764 4508 ? 4244 94.100 ? ? 0.825 ? 0.336 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.467 ? ? 2 ? ? ? 2.060 2.150 ? 4.5 ? 7435 4315 ? 4091 94.800 ? ? 0.891 ? 0.238 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.331 ? ? 3 ? ? ? 2.150 2.260 ? 5.8 ? 7230 4324 ? 4062 93.900 ? ? 0.934 ? 0.177 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.245 ? ? 4 ? ? ? 2.260 2.410 ? 7.4 ? 7552 4825 ? 4416 91.500 ? ? 0.961 ? 0.132 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.182 ? ? 5 ? ? ? 2.410 2.590 ? 9.3 ? 7453 4288 ? 4053 94.500 ? ? 0.981 ? 0.091 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.126 ? ? 6 ? ? ? 2.590 2.850 ? 12.2 ? 7532 4492 ? 4218 93.900 ? ? 0.991 ? 0.062 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.086 ? ? 7 ? ? ? 2.850 3.260 ? 16.4 ? 6841 4472 ? 3991 89.200 ? ? 0.995 ? 0.041 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.057 ? ? 8 ? ? ? 3.260 4.100 ? 21.9 ? 7026 4472 ? 3942 88.100 ? ? 0.996 ? 0.030 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.041 ? ? 9 ? ? ? 4.100 ? ? 24.8 ? 7023 4550 ? 4029 88.500 ? ? 0.998 ? 0.023 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.032 ? ? 10 ? ? ? # _refine.aniso_B[1][1] 3.5736 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -2.1054 _refine.aniso_B[2][2] 4.7993 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -8.3729 _refine.B_iso_max 149.890 _refine.B_iso_mean 45.8312 _refine.B_iso_min 21.120 _refine.correlation_coeff_Fo_to_Fc 0.9583 _refine.correlation_coeff_Fo_to_Fc_free 0.9395 _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. CONDITIONS. 3. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YOD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 28.343 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22078 _refine.ls_number_reflns_R_free 1126 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.4300 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1789 _refine.ls_R_factor_R_free 0.2144 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1770 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 4YOD _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.263 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2263 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 197 _refine_hist.number_atoms_total 2460 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 28.343 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 1099 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 69 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 325 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2335 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 316 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2688 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 2335 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.940 ? 3178 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 2.880 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 2.850 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9900 _refine_ls_shell.number_reflns_all 2802 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 126 _refine_ls_shell.number_reflns_R_work 2676 _refine_ls_shell.percent_reflns_obs 95.4300 _refine_ls_shell.percent_reflns_R_free 4.5000 _refine_ls_shell.R_factor_all 0.2209 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2320 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2203 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4YOD _struct.title 'Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae ATCC 43185 at 1.90 A resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YOD _struct_keywords.text ;Thioredoxin fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 26 ? TYR A 38 ? ALA A 51 TYR A 63 1 ? 13 HELX_P HELX_P2 AA2 HIS A 52 ? LEU A 67 ? HIS A 77 LEU A 92 1 ? 16 HELX_P HELX_P3 AA3 ASN A 68 ? VAL A 70 ? ASN A 93 VAL A 95 5 ? 3 HELX_P HELX_P4 AA4 PRO A 71 ? THR A 86 ? PRO A 96 THR A 111 1 ? 16 HELX_P HELX_P5 AA5 ASP A 89 ? TYR A 105 ? ASP A 114 TYR A 130 1 ? 17 HELX_P HELX_P6 AA6 ASN A 113 ? ALA A 126 ? ASN A 138 ALA A 151 1 ? 14 HELX_P HELX_P7 AA7 GLU A 131 ? LYS A 147 ? GLU A 156 LYS A 172 1 ? 17 HELX_P HELX_P8 AA8 TYR A 170 ? LEU A 172 ? TYR A 195 LEU A 197 5 ? 3 HELX_P HELX_P9 AA9 CYS A 186 ? GLN A 198 ? CYS A 211 GLN A 223 1 ? 13 HELX_P HELX_P10 AB1 ALA A 199 ? GLU A 208 ? ALA A 224 GLU A 233 1 ? 10 HELX_P HELX_P11 AB2 GLU A 221 ? LEU A 229 ? GLU A 246 LEU A 254 1 ? 9 HELX_P HELX_P12 AB3 ASN A 230 ? PHE A 232 ? ASN A 255 PHE A 257 5 ? 3 HELX_P HELX_P13 AB4 PHE A 244 ? LYS A 249 ? PHE A 269 LYS A 274 1 ? 6 HELX_P HELX_P14 AB5 THR A 275 ? GLN A 287 ? THR A 300 GLN A 312 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 23 C ? ? ? 1_555 A MSE 24 N ? ? A ILE 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale2 covale both ? A MSE 24 C ? ? ? 1_555 A VAL 25 N ? ? A MSE 49 A VAL 50 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A PRO 110 C ? ? ? 1_555 A MSE 111 N ? ? A PRO 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale4 covale both ? A MSE 111 C ? ? ? 1_555 A ARG 112 N ? ? A MSE 136 A ARG 137 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A ALA 123 C ? ? ? 1_555 A MSE 124 N ? ? A ALA 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale6 covale both ? A MSE 124 C ? ? ? 1_555 A ALA 125 N ? ? A MSE 149 A ALA 150 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A LEU 283 C ? ? ? 1_555 A MSE 284 N ? ? A LEU 308 A MSE 309 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale8 covale both ? A MSE 284 C ? ? ? 1_555 A ILE 285 N ? ? A MSE 309 A ILE 310 1_555 ? ? ? ? ? ? ? 1.344 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 257 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 282 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 258 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 283 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 9.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 158 ? THR A 160 ? THR A 183 THR A 185 AA1 2 GLN A 166 ? SER A 168 ? GLN A 191 SER A 193 AA2 1 ILE A 237 ? TYR A 240 ? ILE A 262 TYR A 265 AA2 2 LEU A 211 ? TYR A 217 ? LEU A 236 TYR A 242 AA2 3 TYR A 176 ? ILE A 181 ? TYR A 201 ILE A 206 AA2 4 THR A 259 ? LEU A 263 ? THR A 284 LEU A 288 AA2 5 VAL A 269 ? LYS A 272 ? VAL A 294 LYS A 297 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 159 ? N TYR A 184 O GLY A 167 ? O GLY A 192 AA2 1 2 O ILE A 237 ? O ILE A 262 N VAL A 213 ? N VAL A 238 AA2 2 3 O LEU A 214 ? O LEU A 239 N PHE A 180 ? N PHE A 205 AA2 3 4 N LEU A 177 ? N LEU A 202 O LEU A 263 ? O LEU A 288 AA2 4 5 N LEU A 262 ? N LEU A 287 O LEU A 270 ? O LEU A 295 # _atom_sites.entry_id 4YOD _atom_sites.fract_transf_matrix[1][1] 0.021640 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002818 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022017 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014270 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 27 ? ? ? A . n A 1 3 THR 3 28 ? ? ? A . n A 1 4 LYS 4 29 ? ? ? A . n A 1 5 ASN 5 30 ? ? ? A . n A 1 6 GLU 6 31 ? ? ? A . n A 1 7 VAL 7 32 ? ? ? A . n A 1 8 SER 8 33 ? ? ? A . n A 1 9 GLN 9 34 ? ? ? A . n A 1 10 ASP 10 35 ? ? ? A . n A 1 11 THR 11 36 36 THR THR A . n A 1 12 ILE 12 37 37 ILE ILE A . n A 1 13 LYS 13 38 38 LYS LYS A . n A 1 14 THR 14 39 39 THR THR A . n A 1 15 PHE 15 40 40 PHE PHE A . n A 1 16 THR 16 41 41 THR THR A . n A 1 17 LEU 17 42 42 LEU LEU A . n A 1 18 PRO 18 43 43 PRO PRO A . n A 1 19 ALA 19 44 44 ALA ALA A . n A 1 20 ILE 20 45 45 ILE ILE A . n A 1 21 PRO 21 46 46 PRO PRO A . n A 1 22 GLN 22 47 47 GLN GLN A . n A 1 23 ILE 23 48 48 ILE ILE A . n A 1 24 MSE 24 49 49 MSE MSE A . n A 1 25 VAL 25 50 50 VAL VAL A . n A 1 26 ALA 26 51 51 ALA ALA A . n A 1 27 PRO 27 52 52 PRO PRO A . n A 1 28 GLU 28 53 53 GLU GLU A . n A 1 29 GLN 29 54 54 GLN GLN A . n A 1 30 ARG 30 55 55 ARG ARG A . n A 1 31 ALA 31 56 56 ALA ALA A . n A 1 32 GLU 32 57 57 GLU GLU A . n A 1 33 PHE 33 58 58 PHE PHE A . n A 1 34 LEU 34 59 59 LEU LEU A . n A 1 35 VAL 35 60 60 VAL VAL A . n A 1 36 LYS 36 61 61 LYS LYS A . n A 1 37 HIS 37 62 62 HIS HIS A . n A 1 38 TYR 38 63 63 TYR TYR A . n A 1 39 TRP 39 64 64 TRP TRP A . n A 1 40 ASP 40 65 65 ASP ASP A . n A 1 41 ASN 41 66 66 ASN ASN A . n A 1 42 VAL 42 67 67 VAL VAL A . n A 1 43 ASN 43 68 68 ASN ASN A . n A 1 44 PHE 44 69 69 PHE PHE A . n A 1 45 ALA 45 70 70 ALA ALA A . n A 1 46 ASP 46 71 71 ASP ASP A . n A 1 47 THR 47 72 72 THR THR A . n A 1 48 ASN 48 73 73 ASN ASN A . n A 1 49 TYR 49 74 74 TYR TYR A . n A 1 50 ILE 50 75 75 ILE ILE A . n A 1 51 HIS 51 76 76 HIS HIS A . n A 1 52 HIS 52 77 77 HIS HIS A . n A 1 53 PRO 53 78 78 PRO PRO A . n A 1 54 GLU 54 79 79 GLU GLU A . n A 1 55 ILE 55 80 80 ILE ILE A . n A 1 56 THR 56 81 81 THR THR A . n A 1 57 GLU 57 82 82 GLU GLU A . n A 1 58 GLN 58 83 83 GLN GLN A . n A 1 59 ALA 59 84 84 ALA ALA A . n A 1 60 TRP 60 85 85 TRP TRP A . n A 1 61 VAL 61 86 86 VAL VAL A . n A 1 62 ASP 62 87 87 ASP ASP A . n A 1 63 TYR 63 88 88 TYR TYR A . n A 1 64 CYS 64 89 89 CYS CYS A . n A 1 65 ASP 65 90 90 ASP ASP A . n A 1 66 ILE 66 91 91 ILE ILE A . n A 1 67 LEU 67 92 92 LEU LEU A . n A 1 68 ASN 68 93 93 ASN ASN A . n A 1 69 HIS 69 94 94 HIS HIS A . n A 1 70 VAL 70 95 95 VAL VAL A . n A 1 71 PRO 71 96 96 PRO PRO A . n A 1 72 LEU 72 97 97 LEU LEU A . n A 1 73 LYS 73 98 98 LYS LYS A . n A 1 74 THR 74 99 99 THR THR A . n A 1 75 ALA 75 100 100 ALA ALA A . n A 1 76 GLN 76 101 101 GLN GLN A . n A 1 77 GLU 77 102 102 GLU GLU A . n A 1 78 ALA 78 103 103 ALA ALA A . n A 1 79 ILE 79 104 104 ILE ILE A . n A 1 80 ARG 80 105 105 ARG ARG A . n A 1 81 LYS 81 106 106 LYS LYS A . n A 1 82 THR 82 107 107 THR THR A . n A 1 83 ILE 83 108 108 ILE ILE A . n A 1 84 ASP 84 109 109 ASP ASP A . n A 1 85 ARG 85 110 110 ARG ARG A . n A 1 86 THR 86 111 111 THR THR A . n A 1 87 ASN 87 112 112 ASN ASN A . n A 1 88 VAL 88 113 113 VAL VAL A . n A 1 89 ASP 89 114 114 ASP ASP A . n A 1 90 LYS 90 115 115 LYS LYS A . n A 1 91 LYS 91 116 116 LYS LYS A . n A 1 92 VAL 92 117 117 VAL VAL A . n A 1 93 PHE 93 118 118 PHE PHE A . n A 1 94 ALA 94 119 119 ALA ALA A . n A 1 95 TYR 95 120 120 TYR TYR A . n A 1 96 ILE 96 121 121 ILE ILE A . n A 1 97 THR 97 122 122 THR THR A . n A 1 98 ASP 98 123 123 ASP ASP A . n A 1 99 LEU 99 124 124 LEU LEU A . n A 1 100 ALA 100 125 125 ALA ALA A . n A 1 101 ASP 101 126 126 ASP ASP A . n A 1 102 LYS 102 127 127 LYS LYS A . n A 1 103 TYR 103 128 128 TYR TYR A . n A 1 104 LEU 104 129 129 LEU LEU A . n A 1 105 TYR 105 130 130 TYR TYR A . n A 1 106 ASP 106 131 131 ASP ASP A . n A 1 107 PRO 107 132 132 PRO PRO A . n A 1 108 ASN 108 133 133 ASN ASN A . n A 1 109 SER 109 134 134 SER SER A . n A 1 110 PRO 110 135 135 PRO PRO A . n A 1 111 MSE 111 136 136 MSE MSE A . n A 1 112 ARG 112 137 137 ARG ARG A . n A 1 113 ASN 113 138 138 ASN ASN A . n A 1 114 GLU 114 139 139 GLU GLU A . n A 1 115 GLU 115 140 140 GLU GLU A . n A 1 116 PHE 116 141 141 PHE PHE A . n A 1 117 TYR 117 142 142 TYR TYR A . n A 1 118 ILE 118 143 143 ILE ILE A . n A 1 119 PRO 119 144 144 PRO PRO A . n A 1 120 VAL 120 145 145 VAL VAL A . n A 1 121 LEU 121 146 146 LEU LEU A . n A 1 122 GLU 122 147 147 GLU GLU A . n A 1 123 ALA 123 148 148 ALA ALA A . n A 1 124 MSE 124 149 149 MSE MSE A . n A 1 125 ALA 125 150 150 ALA ALA A . n A 1 126 ALA 126 151 151 ALA ALA A . n A 1 127 SER 127 152 152 SER SER A . n A 1 128 PRO 128 153 153 PRO PRO A . n A 1 129 VAL 129 154 154 VAL VAL A . n A 1 130 LEU 130 155 155 LEU LEU A . n A 1 131 GLU 131 156 156 GLU GLU A . n A 1 132 GLU 132 157 157 GLU GLU A . n A 1 133 ILE 133 158 158 ILE ILE A . n A 1 134 GLU 134 159 159 GLU GLU A . n A 1 135 LYS 135 160 160 LYS LYS A . n A 1 136 VAL 136 161 161 VAL VAL A . n A 1 137 ARG 137 162 162 ARG ARG A . n A 1 138 PRO 138 163 163 PRO PRO A . n A 1 139 LYS 139 164 164 LYS LYS A . n A 1 140 ALA 140 165 165 ALA ALA A . n A 1 141 ARG 141 166 166 ARG ARG A . n A 1 142 LEU 142 167 167 LEU LEU A . n A 1 143 GLU 143 168 168 GLU GLU A . n A 1 144 LEU 144 169 169 LEU LEU A . n A 1 145 ALA 145 170 170 ALA ALA A . n A 1 146 GLN 146 171 171 GLN GLN A . n A 1 147 LYS 147 172 172 LYS LYS A . n A 1 148 ASN 148 173 173 ASN ASN A . n A 1 149 ARG 149 174 174 ARG ARG A . n A 1 150 ILE 150 175 175 ILE ILE A . n A 1 151 GLY 151 176 176 GLY GLY A . n A 1 152 THR 152 177 177 THR THR A . n A 1 153 LYS 153 178 178 LYS LYS A . n A 1 154 ALA 154 179 179 ALA ALA A . n A 1 155 ILE 155 180 180 ILE ILE A . n A 1 156 ASN 156 181 181 ASN ASN A . n A 1 157 PHE 157 182 182 PHE PHE A . n A 1 158 THR 158 183 183 THR THR A . n A 1 159 TYR 159 184 184 TYR TYR A . n A 1 160 THR 160 185 185 THR THR A . n A 1 161 LEU 161 186 186 LEU LEU A . n A 1 162 ALA 162 187 187 ALA ALA A . n A 1 163 SER 163 188 188 SER SER A . n A 1 164 GLY 164 189 189 GLY GLY A . n A 1 165 ALA 165 190 190 ALA ALA A . n A 1 166 GLN 166 191 191 GLN GLN A . n A 1 167 GLY 167 192 192 GLY GLY A . n A 1 168 SER 168 193 193 SER SER A . n A 1 169 LEU 169 194 194 LEU LEU A . n A 1 170 TYR 170 195 195 TYR TYR A . n A 1 171 GLN 171 196 196 GLN GLN A . n A 1 172 LEU 172 197 197 LEU LEU A . n A 1 173 ASN 173 198 198 ASN ASN A . n A 1 174 ALA 174 199 199 ALA ALA A . n A 1 175 ASP 175 200 200 ASP ASP A . n A 1 176 TYR 176 201 201 TYR TYR A . n A 1 177 LEU 177 202 202 LEU LEU A . n A 1 178 LEU 178 203 203 LEU LEU A . n A 1 179 LEU 179 204 204 LEU LEU A . n A 1 180 PHE 180 205 205 PHE PHE A . n A 1 181 ILE 181 206 206 ILE ILE A . n A 1 182 ASN 182 207 207 ASN ASN A . n A 1 183 ASN 183 208 208 ASN ASN A . n A 1 184 PRO 184 209 209 PRO PRO A . n A 1 185 GLY 185 210 210 GLY GLY A . n A 1 186 CYS 186 211 211 CYS CYS A . n A 1 187 HIS 187 212 212 HIS HIS A . n A 1 188 ALA 188 213 213 ALA ALA A . n A 1 189 CYS 189 214 214 CYS CYS A . n A 1 190 THR 190 215 215 THR THR A . n A 1 191 GLU 191 216 216 GLU GLU A . n A 1 192 THR 192 217 217 THR THR A . n A 1 193 ILE 193 218 218 ILE ILE A . n A 1 194 GLU 194 219 219 GLU GLU A . n A 1 195 GLY 195 220 220 GLY GLY A . n A 1 196 LEU 196 221 221 LEU LEU A . n A 1 197 LYS 197 222 222 LYS LYS A . n A 1 198 GLN 198 223 223 GLN GLN A . n A 1 199 ALA 199 224 224 ALA ALA A . n A 1 200 PRO 200 225 225 PRO PRO A . n A 1 201 ILE 201 226 226 ILE ILE A . n A 1 202 ILE 202 227 227 ILE ILE A . n A 1 203 SER 203 228 228 SER SER A . n A 1 204 GLN 204 229 229 GLN GLN A . n A 1 205 LEU 205 230 230 LEU LEU A . n A 1 206 ILE 206 231 231 ILE ILE A . n A 1 207 LYS 207 232 232 LYS LYS A . n A 1 208 GLU 208 233 233 GLU GLU A . n A 1 209 LYS 209 234 234 LYS LYS A . n A 1 210 LYS 210 235 235 LYS LYS A . n A 1 211 LEU 211 236 236 LEU LEU A . n A 1 212 ILE 212 237 237 ILE ILE A . n A 1 213 VAL 213 238 238 VAL VAL A . n A 1 214 LEU 214 239 239 LEU LEU A . n A 1 215 SER 215 240 240 SER SER A . n A 1 216 ILE 216 241 241 ILE ILE A . n A 1 217 TYR 217 242 242 TYR TYR A . n A 1 218 PRO 218 243 243 PRO PRO A . n A 1 219 ASP 219 244 244 ASP ASP A . n A 1 220 GLU 220 245 245 GLU GLU A . n A 1 221 GLU 221 246 246 GLU GLU A . n A 1 222 LEU 222 247 247 LEU LEU A . n A 1 223 ASP 223 248 248 ASP ASP A . n A 1 224 ASP 224 249 249 ASP ASP A . n A 1 225 TRP 225 250 250 TRP TRP A . n A 1 226 ARG 226 251 251 ARG ARG A . n A 1 227 LYS 227 252 252 LYS LYS A . n A 1 228 HIS 228 253 253 HIS HIS A . n A 1 229 LEU 229 254 254 LEU LEU A . n A 1 230 ASN 230 255 255 ASN ASN A . n A 1 231 GLU 231 256 256 GLU GLU A . n A 1 232 PHE 232 257 257 PHE PHE A . n A 1 233 PRO 233 258 258 PRO PRO A . n A 1 234 LYS 234 259 259 LYS LYS A . n A 1 235 GLU 235 260 260 GLU GLU A . n A 1 236 TRP 236 261 261 TRP TRP A . n A 1 237 ILE 237 262 262 ILE ILE A . n A 1 238 ASN 238 263 263 ASN ASN A . n A 1 239 GLY 239 264 264 GLY GLY A . n A 1 240 TYR 240 265 265 TYR TYR A . n A 1 241 ASP 241 266 266 ASP ASP A . n A 1 242 LYS 242 267 267 LYS LYS A . n A 1 243 LYS 243 268 268 LYS LYS A . n A 1 244 PHE 244 269 269 PHE PHE A . n A 1 245 THR 245 270 270 THR THR A . n A 1 246 ILE 246 271 271 ILE ILE A . n A 1 247 LYS 247 272 272 LYS LYS A . n A 1 248 GLU 248 273 273 GLU GLU A . n A 1 249 LYS 249 274 274 LYS LYS A . n A 1 250 GLN 250 275 275 GLN GLN A . n A 1 251 LEU 251 276 276 LEU LEU A . n A 1 252 TYR 252 277 277 TYR TYR A . n A 1 253 ASP 253 278 278 ASP ASP A . n A 1 254 LEU 254 279 279 LEU LEU A . n A 1 255 LYS 255 280 280 LYS LYS A . n A 1 256 ALA 256 281 281 ALA ALA A . n A 1 257 ILE 257 282 282 ILE ILE A . n A 1 258 PRO 258 283 283 PRO PRO A . n A 1 259 THR 259 284 284 THR THR A . n A 1 260 LEU 260 285 285 LEU LEU A . n A 1 261 TYR 261 286 286 TYR TYR A . n A 1 262 LEU 262 287 287 LEU LEU A . n A 1 263 LEU 263 288 288 LEU LEU A . n A 1 264 ASN 264 289 289 ASN ASN A . n A 1 265 LYS 265 290 290 LYS LYS A . n A 1 266 GLU 266 291 291 GLU GLU A . n A 1 267 LYS 267 292 292 LYS LYS A . n A 1 268 THR 268 293 293 THR THR A . n A 1 269 VAL 269 294 294 VAL VAL A . n A 1 270 LEU 270 295 295 LEU LEU A . n A 1 271 LEU 271 296 296 LEU LEU A . n A 1 272 LYS 272 297 297 LYS LYS A . n A 1 273 ASP 273 298 298 ASP ASP A . n A 1 274 ALA 274 299 299 ALA ALA A . n A 1 275 THR 275 300 300 THR THR A . n A 1 276 THR 276 301 301 THR THR A . n A 1 277 GLN 277 302 302 GLN GLN A . n A 1 278 ALA 278 303 303 ALA ALA A . n A 1 279 ILE 279 304 304 ILE ILE A . n A 1 280 GLU 280 305 305 GLU GLU A . n A 1 281 GLU 281 306 306 GLU GLU A . n A 1 282 TYR 282 307 307 TYR TYR A . n A 1 283 LEU 283 308 308 LEU LEU A . n A 1 284 MSE 284 309 309 MSE MSE A . n A 1 285 ILE 285 310 310 ILE ILE A . n A 1 286 HIS 286 311 311 HIS HIS A . n A 1 287 GLN 287 312 312 GLN GLN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 401 449 HOH HOH A . B 2 HOH 2 402 370 HOH HOH A . B 2 HOH 3 403 397 HOH HOH A . B 2 HOH 4 404 342 HOH HOH A . B 2 HOH 5 405 395 HOH HOH A . B 2 HOH 6 406 364 HOH HOH A . B 2 HOH 7 407 372 HOH HOH A . B 2 HOH 8 408 407 HOH HOH A . B 2 HOH 9 409 494 HOH HOH A . B 2 HOH 10 410 349 HOH HOH A . B 2 HOH 11 411 441 HOH HOH A . B 2 HOH 12 412 451 HOH HOH A . B 2 HOH 13 413 416 HOH HOH A . B 2 HOH 14 414 482 HOH HOH A . B 2 HOH 15 415 443 HOH HOH A . B 2 HOH 16 416 411 HOH HOH A . B 2 HOH 17 417 321 HOH HOH A . B 2 HOH 18 418 381 HOH HOH A . B 2 HOH 19 419 427 HOH HOH A . B 2 HOH 20 420 369 HOH HOH A . B 2 HOH 21 421 388 HOH HOH A . B 2 HOH 22 422 502 HOH HOH A . B 2 HOH 23 423 361 HOH HOH A . B 2 HOH 24 424 420 HOH HOH A . B 2 HOH 25 425 379 HOH HOH A . B 2 HOH 26 426 377 HOH HOH A . B 2 HOH 27 427 496 HOH HOH A . B 2 HOH 28 428 373 HOH HOH A . B 2 HOH 29 429 363 HOH HOH A . B 2 HOH 30 430 469 HOH HOH A . B 2 HOH 31 431 445 HOH HOH A . B 2 HOH 32 432 414 HOH HOH A . B 2 HOH 33 433 368 HOH HOH A . B 2 HOH 34 434 425 HOH HOH A . B 2 HOH 35 435 346 HOH HOH A . B 2 HOH 36 436 491 HOH HOH A . B 2 HOH 37 437 495 HOH HOH A . B 2 HOH 38 438 375 HOH HOH A . B 2 HOH 39 439 513 HOH HOH A . B 2 HOH 40 440 339 HOH HOH A . B 2 HOH 41 441 389 HOH HOH A . B 2 HOH 42 442 374 HOH HOH A . B 2 HOH 43 443 367 HOH HOH A . B 2 HOH 44 444 473 HOH HOH A . B 2 HOH 45 445 333 HOH HOH A . B 2 HOH 46 446 466 HOH HOH A . B 2 HOH 47 447 341 HOH HOH A . B 2 HOH 48 448 408 HOH HOH A . B 2 HOH 49 449 512 HOH HOH A . B 2 HOH 50 450 498 HOH HOH A . B 2 HOH 51 451 484 HOH HOH A . B 2 HOH 52 452 437 HOH HOH A . B 2 HOH 53 453 350 HOH HOH A . B 2 HOH 54 454 454 HOH HOH A . B 2 HOH 55 455 452 HOH HOH A . B 2 HOH 56 456 358 HOH HOH A . B 2 HOH 57 457 470 HOH HOH A . B 2 HOH 58 458 448 HOH HOH A . B 2 HOH 59 459 447 HOH HOH A . B 2 HOH 60 460 406 HOH HOH A . B 2 HOH 61 461 515 HOH HOH A . B 2 HOH 62 462 485 HOH HOH A . B 2 HOH 63 463 504 HOH HOH A . B 2 HOH 64 464 461 HOH HOH A . B 2 HOH 65 465 458 HOH HOH A . B 2 HOH 66 466 506 HOH HOH A . B 2 HOH 67 467 428 HOH HOH A . B 2 HOH 68 468 516 HOH HOH A . B 2 HOH 69 469 456 HOH HOH A . B 2 HOH 70 470 337 HOH HOH A . B 2 HOH 71 471 340 HOH HOH A . B 2 HOH 72 472 479 HOH HOH A . B 2 HOH 73 473 488 HOH HOH A . B 2 HOH 74 474 334 HOH HOH A . B 2 HOH 75 475 465 HOH HOH A . B 2 HOH 76 476 320 HOH HOH A . B 2 HOH 77 477 322 HOH HOH A . B 2 HOH 78 478 323 HOH HOH A . B 2 HOH 79 479 324 HOH HOH A . B 2 HOH 80 480 325 HOH HOH A . B 2 HOH 81 481 326 HOH HOH A . B 2 HOH 82 482 327 HOH HOH A . B 2 HOH 83 483 328 HOH HOH A . B 2 HOH 84 484 329 HOH HOH A . B 2 HOH 85 485 330 HOH HOH A . B 2 HOH 86 486 331 HOH HOH A . B 2 HOH 87 487 332 HOH HOH A . B 2 HOH 88 488 335 HOH HOH A . B 2 HOH 89 489 336 HOH HOH A . B 2 HOH 90 490 338 HOH HOH A . B 2 HOH 91 491 343 HOH HOH A . B 2 HOH 92 492 344 HOH HOH A . B 2 HOH 93 493 345 HOH HOH A . B 2 HOH 94 494 347 HOH HOH A . B 2 HOH 95 495 348 HOH HOH A . B 2 HOH 96 496 351 HOH HOH A . B 2 HOH 97 497 352 HOH HOH A . B 2 HOH 98 498 353 HOH HOH A . B 2 HOH 99 499 354 HOH HOH A . B 2 HOH 100 500 355 HOH HOH A . B 2 HOH 101 501 356 HOH HOH A . B 2 HOH 102 502 357 HOH HOH A . B 2 HOH 103 503 359 HOH HOH A . B 2 HOH 104 504 360 HOH HOH A . B 2 HOH 105 505 362 HOH HOH A . B 2 HOH 106 506 365 HOH HOH A . B 2 HOH 107 507 366 HOH HOH A . B 2 HOH 108 508 371 HOH HOH A . B 2 HOH 109 509 376 HOH HOH A . B 2 HOH 110 510 378 HOH HOH A . B 2 HOH 111 511 380 HOH HOH A . B 2 HOH 112 512 382 HOH HOH A . B 2 HOH 113 513 383 HOH HOH A . B 2 HOH 114 514 384 HOH HOH A . B 2 HOH 115 515 385 HOH HOH A . B 2 HOH 116 516 386 HOH HOH A . B 2 HOH 117 517 387 HOH HOH A . B 2 HOH 118 518 390 HOH HOH A . B 2 HOH 119 519 391 HOH HOH A . B 2 HOH 120 520 392 HOH HOH A . B 2 HOH 121 521 393 HOH HOH A . B 2 HOH 122 522 394 HOH HOH A . B 2 HOH 123 523 396 HOH HOH A . B 2 HOH 124 524 398 HOH HOH A . B 2 HOH 125 525 399 HOH HOH A . B 2 HOH 126 526 400 HOH HOH A . B 2 HOH 127 527 401 HOH HOH A . B 2 HOH 128 528 402 HOH HOH A . B 2 HOH 129 529 403 HOH HOH A . B 2 HOH 130 530 404 HOH HOH A . B 2 HOH 131 531 405 HOH HOH A . B 2 HOH 132 532 409 HOH HOH A . B 2 HOH 133 533 410 HOH HOH A . B 2 HOH 134 534 412 HOH HOH A . B 2 HOH 135 535 413 HOH HOH A . B 2 HOH 136 536 415 HOH HOH A . B 2 HOH 137 537 417 HOH HOH A . B 2 HOH 138 538 418 HOH HOH A . B 2 HOH 139 539 419 HOH HOH A . B 2 HOH 140 540 421 HOH HOH A . B 2 HOH 141 541 422 HOH HOH A . B 2 HOH 142 542 423 HOH HOH A . B 2 HOH 143 543 424 HOH HOH A . B 2 HOH 144 544 426 HOH HOH A . B 2 HOH 145 545 429 HOH HOH A . B 2 HOH 146 546 430 HOH HOH A . B 2 HOH 147 547 431 HOH HOH A . B 2 HOH 148 548 432 HOH HOH A . B 2 HOH 149 549 433 HOH HOH A . B 2 HOH 150 550 434 HOH HOH A . B 2 HOH 151 551 435 HOH HOH A . B 2 HOH 152 552 436 HOH HOH A . B 2 HOH 153 553 438 HOH HOH A . B 2 HOH 154 554 439 HOH HOH A . B 2 HOH 155 555 440 HOH HOH A . B 2 HOH 156 556 442 HOH HOH A . B 2 HOH 157 557 444 HOH HOH A . B 2 HOH 158 558 446 HOH HOH A . B 2 HOH 159 559 450 HOH HOH A . B 2 HOH 160 560 453 HOH HOH A . B 2 HOH 161 561 455 HOH HOH A . B 2 HOH 162 562 457 HOH HOH A . B 2 HOH 163 563 459 HOH HOH A . B 2 HOH 164 564 460 HOH HOH A . B 2 HOH 165 565 462 HOH HOH A . B 2 HOH 166 566 463 HOH HOH A . B 2 HOH 167 567 464 HOH HOH A . B 2 HOH 168 568 467 HOH HOH A . B 2 HOH 169 569 468 HOH HOH A . B 2 HOH 170 570 471 HOH HOH A . B 2 HOH 171 571 472 HOH HOH A . B 2 HOH 172 572 474 HOH HOH A . B 2 HOH 173 573 475 HOH HOH A . B 2 HOH 174 574 476 HOH HOH A . B 2 HOH 175 575 477 HOH HOH A . B 2 HOH 176 576 478 HOH HOH A . B 2 HOH 177 577 480 HOH HOH A . B 2 HOH 178 578 481 HOH HOH A . B 2 HOH 179 579 483 HOH HOH A . B 2 HOH 180 580 486 HOH HOH A . B 2 HOH 181 581 487 HOH HOH A . B 2 HOH 182 582 489 HOH HOH A . B 2 HOH 183 583 490 HOH HOH A . B 2 HOH 184 584 492 HOH HOH A . B 2 HOH 185 585 493 HOH HOH A . B 2 HOH 186 586 497 HOH HOH A . B 2 HOH 187 587 499 HOH HOH A . B 2 HOH 188 588 500 HOH HOH A . B 2 HOH 189 589 501 HOH HOH A . B 2 HOH 190 590 503 HOH HOH A . B 2 HOH 191 591 505 HOH HOH A . B 2 HOH 192 592 507 HOH HOH A . B 2 HOH 193 593 508 HOH HOH A . B 2 HOH 194 594 509 HOH HOH A . B 2 HOH 195 595 510 HOH HOH A . B 2 HOH 196 596 511 HOH HOH A . B 2 HOH 197 597 514 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 24 A MSE 49 ? MET 'modified residue' 2 A MSE 111 A MSE 136 ? MET 'modified residue' 3 A MSE 124 A MSE 149 ? MET 'modified residue' 4 A MSE 284 A MSE 309 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-25 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' pdbx_struct_oper_list 3 2 'Structure model' software 4 3 'Structure model' citation_author 5 4 'Structure model' database_2 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 3 'Structure model' '_citation_author.name' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 2.0893 20.3508 27.0581 -0.0904 ? -0.0214 ? 0.0243 ? -0.1082 ? 0.0038 ? -0.0120 ? 0.6544 ? 0.8034 ? -0.0797 ? 3.3407 ? 0.2142 ? 1.4620 ? 0.0086 ? 0.0518 ? 0.0848 ? 0.2109 ? -0.0134 ? 0.0143 ? -0.1787 ? 0.0788 ? 0.0048 ? 2 'X-RAY DIFFRACTION' ? refined 13.9947 -2.9274 8.0481 -0.0856 ? -0.0319 ? 0.0818 ? -0.0875 ? -0.0496 ? -0.1095 ? 4.1920 ? -0.0203 ? -0.3482 ? 3.4636 ? -0.4743 ? 2.1959 ? -0.0973 ? 0.5375 ? -0.1960 ? -0.4997 ? 0.0652 ? -0.2906 ? 0.2215 ? 0.0869 ? 0.0321 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 36 ? ? A 174 ? '{A|36 - 174}' 2 'X-RAY DIFFRACTION' 2 ? ? A 175 ? ? A 312 ? '{A|175 - 312}' # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.10 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHARP ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 'November 3, 2014 BUILT=20141118' 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.2 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 7 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 4YOD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (27-312) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 75 ? ? -96.09 -61.64 2 1 HIS A 77 ? ? -140.87 56.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 36 ? OG1 ? A THR 11 OG1 2 1 Y 1 A THR 36 ? CG2 ? A THR 11 CG2 3 1 Y 1 A ILE 37 ? CG1 ? A ILE 12 CG1 4 1 Y 1 A ILE 37 ? CG2 ? A ILE 12 CG2 5 1 Y 1 A ILE 37 ? CD1 ? A ILE 12 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 27 ? A GLN 2 3 1 Y 1 A THR 28 ? A THR 3 4 1 Y 1 A LYS 29 ? A LYS 4 5 1 Y 1 A ASN 30 ? A ASN 5 6 1 Y 1 A GLU 31 ? A GLU 6 7 1 Y 1 A VAL 32 ? A VAL 7 8 1 Y 1 A SER 33 ? A SER 8 9 1 Y 1 A GLN 34 ? A GLN 9 10 1 Y 1 A ASP 35 ? A ASP 10 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #