data_4YOK # _entry.id 4YOK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4YOK WWPDB D_1000207839 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.details . _pdbx_database_related.db_id JCSG-419228 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YOK _pdbx_database_status.recvd_initial_deposition_date 2015-03-11 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of a DUF3823 family protein (PARMER_04126) from Parabacteroides merdae ATCC 43184 at 1.80 A resolution' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 4YOK _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.866 _cell.length_a_esd ? _cell.length_b 66.212 _cell.length_b_esd ? _cell.length_c 68.593 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative flagellar protein FliS' 22503.545 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 water nat water 18.015 174 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GKDNFDAPESKLVGRVTYQGQALNLRGTGEAVQLQLYQDGYEKNDPISVFVGQDGTFSALLFDGEYRLTTRDGNGPWVNN HESVTVNLKGHTEVNLEVTPYF(MSE)ISNEQLSVTGSA(MSE)NASF(MSE)INRIVPDAKISRV(MSE)LLLSKTQFA DDVNNLYRQDFSDVVPGSVNLSADISGNTEIVKAKALYARVGVLANGADQAIYSPVVRLK ; _entity_poly.pdbx_seq_one_letter_code_can ;GKDNFDAPESKLVGRVTYQGQALNLRGTGEAVQLQLYQDGYEKNDPISVFVGQDGTFSALLFDGEYRLTTRDGNGPWVNN HESVTVNLKGHTEVNLEVTPYFMISNEQLSVTGSAMNASFMINRIVPDAKISRVMLLLSKTQFADDVNNLYRQDFSDVVP GSVNLSADISGNTEIVKAKALYARVGVLANGADQAIYSPVVRLK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-419228 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 ASP n 1 4 ASN n 1 5 PHE n 1 6 ASP n 1 7 ALA n 1 8 PRO n 1 9 GLU n 1 10 SER n 1 11 LYS n 1 12 LEU n 1 13 VAL n 1 14 GLY n 1 15 ARG n 1 16 VAL n 1 17 THR n 1 18 TYR n 1 19 GLN n 1 20 GLY n 1 21 GLN n 1 22 ALA n 1 23 LEU n 1 24 ASN n 1 25 LEU n 1 26 ARG n 1 27 GLY n 1 28 THR n 1 29 GLY n 1 30 GLU n 1 31 ALA n 1 32 VAL n 1 33 GLN n 1 34 LEU n 1 35 GLN n 1 36 LEU n 1 37 TYR n 1 38 GLN n 1 39 ASP n 1 40 GLY n 1 41 TYR n 1 42 GLU n 1 43 LYS n 1 44 ASN n 1 45 ASP n 1 46 PRO n 1 47 ILE n 1 48 SER n 1 49 VAL n 1 50 PHE n 1 51 VAL n 1 52 GLY n 1 53 GLN n 1 54 ASP n 1 55 GLY n 1 56 THR n 1 57 PHE n 1 58 SER n 1 59 ALA n 1 60 LEU n 1 61 LEU n 1 62 PHE n 1 63 ASP n 1 64 GLY n 1 65 GLU n 1 66 TYR n 1 67 ARG n 1 68 LEU n 1 69 THR n 1 70 THR n 1 71 ARG n 1 72 ASP n 1 73 GLY n 1 74 ASN n 1 75 GLY n 1 76 PRO n 1 77 TRP n 1 78 VAL n 1 79 ASN n 1 80 ASN n 1 81 HIS n 1 82 GLU n 1 83 SER n 1 84 VAL n 1 85 THR n 1 86 VAL n 1 87 ASN n 1 88 LEU n 1 89 LYS n 1 90 GLY n 1 91 HIS n 1 92 THR n 1 93 GLU n 1 94 VAL n 1 95 ASN n 1 96 LEU n 1 97 GLU n 1 98 VAL n 1 99 THR n 1 100 PRO n 1 101 TYR n 1 102 PHE n 1 103 MSE n 1 104 ILE n 1 105 SER n 1 106 ASN n 1 107 GLU n 1 108 GLN n 1 109 LEU n 1 110 SER n 1 111 VAL n 1 112 THR n 1 113 GLY n 1 114 SER n 1 115 ALA n 1 116 MSE n 1 117 ASN n 1 118 ALA n 1 119 SER n 1 120 PHE n 1 121 MSE n 1 122 ILE n 1 123 ASN n 1 124 ARG n 1 125 ILE n 1 126 VAL n 1 127 PRO n 1 128 ASP n 1 129 ALA n 1 130 LYS n 1 131 ILE n 1 132 SER n 1 133 ARG n 1 134 VAL n 1 135 MSE n 1 136 LEU n 1 137 LEU n 1 138 LEU n 1 139 SER n 1 140 LYS n 1 141 THR n 1 142 GLN n 1 143 PHE n 1 144 ALA n 1 145 ASP n 1 146 ASP n 1 147 VAL n 1 148 ASN n 1 149 ASN n 1 150 LEU n 1 151 TYR n 1 152 ARG n 1 153 GLN n 1 154 ASP n 1 155 PHE n 1 156 SER n 1 157 ASP n 1 158 VAL n 1 159 VAL n 1 160 PRO n 1 161 GLY n 1 162 SER n 1 163 VAL n 1 164 ASN n 1 165 LEU n 1 166 SER n 1 167 ALA n 1 168 ASP n 1 169 ILE n 1 170 SER n 1 171 GLY n 1 172 ASN n 1 173 THR n 1 174 GLU n 1 175 ILE n 1 176 VAL n 1 177 LYS n 1 178 ALA n 1 179 LYS n 1 180 ALA n 1 181 LEU n 1 182 TYR n 1 183 ALA n 1 184 ARG n 1 185 VAL n 1 186 GLY n 1 187 VAL n 1 188 LEU n 1 189 ALA n 1 190 ASN n 1 191 GLY n 1 192 ALA n 1 193 ASP n 1 194 GLN n 1 195 ALA n 1 196 ILE n 1 197 TYR n 1 198 SER n 1 199 PRO n 1 200 VAL n 1 201 VAL n 1 202 ARG n 1 203 LEU n 1 204 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 204 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PARMER_04126 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Parabacteroides merdae ATCC 43184' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411477 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name Bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7AL02_9PORP _struct_ref.pdbx_db_accession A7AL02 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKDNFDAPESKLVGRVTYQGQALNLRGTGEAVQLQLYQDGYEKNDPISVFVGQDGTFSALLFDGEYRLTTRDGNGPWVNN HESVTVNLKGHTEVNLEVTPYFMISNEQLSVTGSAMNASFMINRIVPDAKISRVMLLLSKTQFADDVNNLYRQDFSDVVP GSVNLSADISGNTEIVKAKALYARVGVLANGADQAIYSPVVRLK ; _struct_ref.pdbx_align_begin 23 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4YOK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7AL02 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 226 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 226 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YOK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.33 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2M magnesium chloride, 32.0% polyethylene glycol 1000, 0.01M GSH (L-Glutathione reduced), GSSG (L-Glutathione oxidized), 0.1M sodium cacodylate pH 6.33 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-12-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97947 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97947 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 22.698 _reflns.entry_id 4YOK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 26.531 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18276 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 99.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.998 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.58 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.040 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.078 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 87402 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.800 1.860 ? 1.5 ? 7957 3216 ? 3161 98.300 ? ? 0.565 ? 0.649 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.821 ? ? 1 1 ? ? 1.860 1.940 ? 2.2 ? 9272 3642 ? 3624 99.500 ? ? 0.757 ? 0.458 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.578 ? ? 2 ? ? ? 1.940 2.030 ? 3.5 ? 8848 3460 ? 3445 99.600 ? ? 0.869 ? 0.291 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.367 ? ? 3 ? ? ? 2.030 2.130 ? 4.9 ? 8299 3226 ? 3214 99.600 ? ? 0.931 ? 0.203 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.256 ? ? 4 ? ? ? 2.130 2.270 ? 6.5 ? 9240 3594 ? 3583 99.700 ? ? 0.961 ? 0.150 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.189 ? ? 5 ? ? ? 2.270 2.440 ? 8.3 ? 8619 3335 ? 3312 99.300 ? ? 0.974 ? 0.119 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.150 ? ? 6 ? ? ? 2.440 2.690 ? 11.4 ? 8874 3449 ? 3415 99.000 ? ? 0.987 ? 0.083 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.105 ? ? 7 ? ? ? 2.690 3.070 ? 15.8 ? 8591 3344 ? 3310 99.000 ? ? 0.994 ? 0.056 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.071 ? ? 8 ? ? ? 3.070 3.870 ? 25.0 ? 8937 3477 ? 3417 98.300 ? ? 0.997 ? 0.034 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.043 ? ? 9 ? ? ? 3.870 ? ? 31.3 ? 8765 3452 ? 3361 97.400 ? ? 0.998 ? 0.026 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.033 ? ? 10 ? ? ? # _refine.aniso_B[1][1] -0.0591 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -4.7125 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 4.7716 _refine.B_iso_max 94.690 _refine.B_iso_mean 29.4735 _refine.B_iso_min 13.950 _refine.correlation_coeff_Fo_to_Fc 0.9504 _refine.correlation_coeff_Fo_to_Fc_free 0.9404 _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 3. MG, CL, AND GOL ARE PRESENT IN CRYSTALLIZATION/CRYO CONDITIONS. 4. ELECTRON DENSITY FOR LOOP 61-65 IS WEAK. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YOK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 26.531 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18214 _refine.ls_number_reflns_R_free 925 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_percent_reflns_R_free 5.0800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1753 _refine.ls_R_factor_R_free 0.2141 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1733 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 4YOK _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.188 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1514 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1697 _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 26.531 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 734 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 46 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 234 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1575 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 0 ? t_nbd 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 207 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 1853 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 1575 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.050 ? 2146 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 4.080 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 2.540 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 1.9100 _refine_ls_shell.number_reflns_all 2892 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 165 _refine_ls_shell.number_reflns_R_work 2727 _refine_ls_shell.percent_reflns_obs 99.7800 _refine_ls_shell.percent_reflns_R_free 5.7100 _refine_ls_shell.R_factor_all 0.2064 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2541 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2035 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4YOK _struct.title 'Crystal structure of a DUF3823 family protein (PARMER_04126) from Parabacteroides merdae ATCC 43184 at 1.80 A resolution' _struct.pdbx_descriptor 'DUF3823 family protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YOK _struct_keywords.text ;Prealbumin-like fold, DUF3823, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 172 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 178 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 194 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 200 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A GLU 82 OE1 ? ? ? 1_555 B MG . MG ? ? A GLU 104 A MG 301 1_555 ? ? ? ? ? ? ? 2.031 ? covale1 covale both ? A PHE 102 C ? ? ? 1_555 A MSE 103 N ? ? A PHE 124 A MSE 125 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A MSE 103 C ? ? ? 1_555 A ILE 104 N ? ? A MSE 125 A ILE 126 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? A ALA 115 C ? ? ? 1_555 A MSE 116 N ? ? A ALA 137 A MSE 138 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale both ? A MSE 116 C ? ? ? 1_555 A ASN 117 N ? ? A MSE 138 A ASN 139 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale both ? A PHE 120 C ? ? ? 1_555 A MSE 121 N ? ? A PHE 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale both ? A MSE 121 C ? ? ? 1_555 A ILE 122 N ? ? A MSE 143 A ILE 144 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale both ? A VAL 134 C ? ? ? 1_555 A MSE 135 N ? ? A VAL 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale both ? A MSE 135 C ? ? ? 1_555 A LEU 136 N ? ? A MSE 157 A LEU 158 1_555 ? ? ? ? ? ? ? 1.334 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 301 A HOH 416 1_555 ? ? ? ? ? ? ? 1.964 ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 301 A HOH 439 1_555 ? ? ? ? ? ? ? 2.050 ? metalc4 metalc ? ? A SER 170 OG ? ? ? 1_555 B MG . MG ? ? A SER 192 A MG 301 2_674 ? ? ? ? ? ? ? 2.042 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 301 A HOH 402 2_675 ? ? ? ? ? ? ? 2.095 ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 301 A HOH 450 2_675 ? ? ? ? ? ? ? 2.103 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 3 ? AA5 ? 4 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 21 ? ALA A 22 ? GLN A 43 ALA A 44 AA1 2 GLU A 9 ? TYR A 18 ? GLU A 31 TYR A 40 AA1 3 THR A 56 ? PHE A 62 ? THR A 78 PHE A 84 AA2 1 GLN A 21 ? ALA A 22 ? GLN A 43 ALA A 44 AA2 2 GLU A 9 ? TYR A 18 ? GLU A 31 TYR A 40 AA2 3 THR A 92 ? GLU A 97 ? THR A 114 GLU A 119 AA3 1 ILE A 47 ? PHE A 50 ? ILE A 69 PHE A 72 AA3 2 GLN A 33 ? TYR A 37 ? GLN A 55 TYR A 59 AA3 3 GLY A 64 ? THR A 70 ? GLY A 86 THR A 92 AA3 4 SER A 83 ? LEU A 88 ? SER A 105 LEU A 110 AA4 1 PHE A 102 ? VAL A 111 ? PHE A 124 VAL A 133 AA4 2 ALA A 115 ? ARG A 124 ? ALA A 137 ARG A 146 AA4 3 GLY A 161 ? ASP A 168 ? GLY A 183 ASP A 190 AA5 1 TYR A 151 ? PHE A 155 ? TYR A 173 PHE A 177 AA5 2 ILE A 131 ? SER A 139 ? ILE A 153 SER A 161 AA5 3 LEU A 181 ? ALA A 189 ? LEU A 203 ALA A 211 AA5 4 ILE A 196 ? TYR A 197 ? ILE A 218 TYR A 219 AA6 1 TYR A 151 ? PHE A 155 ? TYR A 173 PHE A 177 AA6 2 ILE A 131 ? SER A 139 ? ILE A 153 SER A 161 AA6 3 LEU A 181 ? ALA A 189 ? LEU A 203 ALA A 211 AA6 4 VAL A 201 ? LYS A 204 ? VAL A 223 LYS A 226 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN A 21 ? O GLN A 43 N TYR A 18 ? N TYR A 40 AA1 2 3 N LEU A 12 ? N LEU A 34 O ALA A 59 ? O ALA A 81 AA2 1 2 O GLN A 21 ? O GLN A 43 N TYR A 18 ? N TYR A 40 AA2 2 3 N THR A 17 ? N THR A 39 O LEU A 96 ? O LEU A 118 AA3 1 2 O ILE A 47 ? O ILE A 69 N LEU A 36 ? N LEU A 58 AA3 2 3 N GLN A 35 ? N GLN A 57 O THR A 69 ? O THR A 91 AA3 3 4 N TYR A 66 ? N TYR A 88 O VAL A 86 ? O VAL A 108 AA4 1 2 N MSE A 103 ? N MSE A 125 O ASN A 123 ? O ASN A 145 AA4 2 3 N PHE A 120 ? N PHE A 142 O VAL A 163 ? O VAL A 185 AA5 1 2 O PHE A 155 ? O PHE A 177 N VAL A 134 ? N VAL A 156 AA5 2 3 N SER A 132 ? N SER A 154 O LEU A 188 ? O LEU A 210 AA5 3 4 N VAL A 187 ? N VAL A 209 O ILE A 196 ? O ILE A 218 AA6 1 2 O PHE A 155 ? O PHE A 177 N VAL A 134 ? N VAL A 156 AA6 2 3 N SER A 132 ? N SER A 154 O LEU A 188 ? O LEU A 210 AA6 3 4 N LEU A 181 ? N LEU A 203 O LEU A 203 ? O LEU A 225 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 301 ? 6 'binding site for residue MG A 301' AC2 Software A GOL 302 ? 6 'binding site for residue GOL A 302' AC3 Software A CL 303 ? 3 'binding site for residue CL A 303' AC4 Software A CL 304 ? 3 'binding site for residue CL A 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 82 ? GLU A 104 . ? 1_555 ? 2 AC1 6 SER A 170 ? SER A 192 . ? 2_675 ? 3 AC1 6 HOH F . ? HOH A 402 . ? 2_675 ? 4 AC1 6 HOH F . ? HOH A 416 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 439 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 450 . ? 2_675 ? 7 AC2 6 GLY A 27 ? GLY A 49 . ? 1_555 ? 8 AC2 6 PHE A 50 ? PHE A 72 . ? 1_555 ? 9 AC2 6 GLY A 52 ? GLY A 74 . ? 1_555 ? 10 AC2 6 THR A 56 ? THR A 78 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH A 444 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH A 502 . ? 1_555 ? 13 AC3 3 GLY A 113 ? GLY A 135 . ? 1_555 ? 14 AC3 3 THR A 141 ? THR A 163 . ? 4_465 ? 15 AC3 3 GLN A 142 ? GLN A 164 . ? 4_465 ? 16 AC4 3 TYR A 151 ? TYR A 173 . ? 1_555 ? 17 AC4 3 ARG A 152 ? ARG A 174 . ? 1_555 ? 18 AC4 3 HOH F . ? HOH A 537 . ? 1_555 ? # _atom_sites.entry_id 4YOK _atom_sites.fract_transf_matrix[1][1] 0.023886 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015103 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014579 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 23 ? ? ? A . n A 1 2 LYS 2 24 ? ? ? A . n A 1 3 ASP 3 25 ? ? ? A . n A 1 4 ASN 4 26 ? ? ? A . n A 1 5 PHE 5 27 ? ? ? A . n A 1 6 ASP 6 28 28 ASP ASP A . n A 1 7 ALA 7 29 29 ALA ALA A . n A 1 8 PRO 8 30 30 PRO PRO A . n A 1 9 GLU 9 31 31 GLU GLU A . n A 1 10 SER 10 32 32 SER SER A . n A 1 11 LYS 11 33 33 LYS LYS A . n A 1 12 LEU 12 34 34 LEU LEU A . n A 1 13 VAL 13 35 35 VAL VAL A . n A 1 14 GLY 14 36 36 GLY GLY A . n A 1 15 ARG 15 37 37 ARG ARG A . n A 1 16 VAL 16 38 38 VAL VAL A . n A 1 17 THR 17 39 39 THR THR A . n A 1 18 TYR 18 40 40 TYR TYR A . n A 1 19 GLN 19 41 41 GLN GLN A . n A 1 20 GLY 20 42 42 GLY GLY A . n A 1 21 GLN 21 43 43 GLN GLN A . n A 1 22 ALA 22 44 44 ALA ALA A . n A 1 23 LEU 23 45 45 LEU LEU A . n A 1 24 ASN 24 46 46 ASN ASN A . n A 1 25 LEU 25 47 47 LEU LEU A . n A 1 26 ARG 26 48 48 ARG ARG A . n A 1 27 GLY 27 49 49 GLY GLY A . n A 1 28 THR 28 50 50 THR THR A . n A 1 29 GLY 29 51 51 GLY GLY A . n A 1 30 GLU 30 52 52 GLU GLU A . n A 1 31 ALA 31 53 53 ALA ALA A . n A 1 32 VAL 32 54 54 VAL VAL A . n A 1 33 GLN 33 55 55 GLN GLN A . n A 1 34 LEU 34 56 56 LEU LEU A . n A 1 35 GLN 35 57 57 GLN GLN A . n A 1 36 LEU 36 58 58 LEU LEU A . n A 1 37 TYR 37 59 59 TYR TYR A . n A 1 38 GLN 38 60 60 GLN GLN A . n A 1 39 ASP 39 61 61 ASP ASP A . n A 1 40 GLY 40 62 62 GLY GLY A . n A 1 41 TYR 41 63 63 TYR TYR A . n A 1 42 GLU 42 64 64 GLU GLU A . n A 1 43 LYS 43 65 65 LYS LYS A . n A 1 44 ASN 44 66 66 ASN ASN A . n A 1 45 ASP 45 67 67 ASP ASP A . n A 1 46 PRO 46 68 68 PRO PRO A . n A 1 47 ILE 47 69 69 ILE ILE A . n A 1 48 SER 48 70 70 SER SER A . n A 1 49 VAL 49 71 71 VAL VAL A . n A 1 50 PHE 50 72 72 PHE PHE A . n A 1 51 VAL 51 73 73 VAL VAL A . n A 1 52 GLY 52 74 74 GLY GLY A . n A 1 53 GLN 53 75 75 GLN GLN A . n A 1 54 ASP 54 76 76 ASP ASP A . n A 1 55 GLY 55 77 77 GLY GLY A . n A 1 56 THR 56 78 78 THR THR A . n A 1 57 PHE 57 79 79 PHE PHE A . n A 1 58 SER 58 80 80 SER SER A . n A 1 59 ALA 59 81 81 ALA ALA A . n A 1 60 LEU 60 82 82 LEU LEU A . n A 1 61 LEU 61 83 83 LEU LEU A . n A 1 62 PHE 62 84 84 PHE PHE A . n A 1 63 ASP 63 85 85 ASP ASP A . n A 1 64 GLY 64 86 86 GLY GLY A . n A 1 65 GLU 65 87 87 GLU GLU A . n A 1 66 TYR 66 88 88 TYR TYR A . n A 1 67 ARG 67 89 89 ARG ARG A . n A 1 68 LEU 68 90 90 LEU LEU A . n A 1 69 THR 69 91 91 THR THR A . n A 1 70 THR 70 92 92 THR THR A . n A 1 71 ARG 71 93 93 ARG ARG A . n A 1 72 ASP 72 94 94 ASP ASP A . n A 1 73 GLY 73 95 95 GLY GLY A . n A 1 74 ASN 74 96 96 ASN ASN A . n A 1 75 GLY 75 97 97 GLY GLY A . n A 1 76 PRO 76 98 98 PRO PRO A . n A 1 77 TRP 77 99 99 TRP TRP A . n A 1 78 VAL 78 100 100 VAL VAL A . n A 1 79 ASN 79 101 101 ASN ASN A . n A 1 80 ASN 80 102 102 ASN ASN A . n A 1 81 HIS 81 103 103 HIS HIS A . n A 1 82 GLU 82 104 104 GLU GLU A . n A 1 83 SER 83 105 105 SER SER A . n A 1 84 VAL 84 106 106 VAL VAL A . n A 1 85 THR 85 107 107 THR THR A . n A 1 86 VAL 86 108 108 VAL VAL A . n A 1 87 ASN 87 109 109 ASN ASN A . n A 1 88 LEU 88 110 110 LEU LEU A . n A 1 89 LYS 89 111 111 LYS LYS A . n A 1 90 GLY 90 112 112 GLY GLY A . n A 1 91 HIS 91 113 113 HIS HIS A . n A 1 92 THR 92 114 114 THR THR A . n A 1 93 GLU 93 115 115 GLU GLU A . n A 1 94 VAL 94 116 116 VAL VAL A . n A 1 95 ASN 95 117 117 ASN ASN A . n A 1 96 LEU 96 118 118 LEU LEU A . n A 1 97 GLU 97 119 119 GLU GLU A . n A 1 98 VAL 98 120 120 VAL VAL A . n A 1 99 THR 99 121 121 THR THR A . n A 1 100 PRO 100 122 122 PRO PRO A . n A 1 101 TYR 101 123 123 TYR TYR A . n A 1 102 PHE 102 124 124 PHE PHE A . n A 1 103 MSE 103 125 125 MSE MSE A . n A 1 104 ILE 104 126 126 ILE ILE A . n A 1 105 SER 105 127 127 SER SER A . n A 1 106 ASN 106 128 128 ASN ASN A . n A 1 107 GLU 107 129 129 GLU GLU A . n A 1 108 GLN 108 130 130 GLN GLN A . n A 1 109 LEU 109 131 131 LEU LEU A . n A 1 110 SER 110 132 132 SER SER A . n A 1 111 VAL 111 133 133 VAL VAL A . n A 1 112 THR 112 134 134 THR THR A . n A 1 113 GLY 113 135 135 GLY GLY A . n A 1 114 SER 114 136 136 SER SER A . n A 1 115 ALA 115 137 137 ALA ALA A . n A 1 116 MSE 116 138 138 MSE MSE A . n A 1 117 ASN 117 139 139 ASN ASN A . n A 1 118 ALA 118 140 140 ALA ALA A . n A 1 119 SER 119 141 141 SER SER A . n A 1 120 PHE 120 142 142 PHE PHE A . n A 1 121 MSE 121 143 143 MSE MSE A . n A 1 122 ILE 122 144 144 ILE ILE A . n A 1 123 ASN 123 145 145 ASN ASN A . n A 1 124 ARG 124 146 146 ARG ARG A . n A 1 125 ILE 125 147 147 ILE ILE A . n A 1 126 VAL 126 148 148 VAL VAL A . n A 1 127 PRO 127 149 149 PRO PRO A . n A 1 128 ASP 128 150 150 ASP ASP A . n A 1 129 ALA 129 151 151 ALA ALA A . n A 1 130 LYS 130 152 152 LYS LYS A . n A 1 131 ILE 131 153 153 ILE ILE A . n A 1 132 SER 132 154 154 SER SER A . n A 1 133 ARG 133 155 155 ARG ARG A . n A 1 134 VAL 134 156 156 VAL VAL A . n A 1 135 MSE 135 157 157 MSE MSE A . n A 1 136 LEU 136 158 158 LEU LEU A . n A 1 137 LEU 137 159 159 LEU LEU A . n A 1 138 LEU 138 160 160 LEU LEU A . n A 1 139 SER 139 161 161 SER SER A . n A 1 140 LYS 140 162 162 LYS LYS A . n A 1 141 THR 141 163 163 THR THR A . n A 1 142 GLN 142 164 164 GLN GLN A . n A 1 143 PHE 143 165 165 PHE PHE A . n A 1 144 ALA 144 166 166 ALA ALA A . n A 1 145 ASP 145 167 167 ASP ASP A . n A 1 146 ASP 146 168 168 ASP ASP A . n A 1 147 VAL 147 169 169 VAL VAL A . n A 1 148 ASN 148 170 170 ASN ASN A . n A 1 149 ASN 149 171 171 ASN ASN A . n A 1 150 LEU 150 172 172 LEU LEU A . n A 1 151 TYR 151 173 173 TYR TYR A . n A 1 152 ARG 152 174 174 ARG ARG A . n A 1 153 GLN 153 175 175 GLN GLN A . n A 1 154 ASP 154 176 176 ASP ASP A . n A 1 155 PHE 155 177 177 PHE PHE A . n A 1 156 SER 156 178 178 SER SER A . n A 1 157 ASP 157 179 179 ASP ASP A . n A 1 158 VAL 158 180 180 VAL VAL A . n A 1 159 VAL 159 181 181 VAL VAL A . n A 1 160 PRO 160 182 182 PRO PRO A . n A 1 161 GLY 161 183 183 GLY GLY A . n A 1 162 SER 162 184 184 SER SER A . n A 1 163 VAL 163 185 185 VAL VAL A . n A 1 164 ASN 164 186 186 ASN ASN A . n A 1 165 LEU 165 187 187 LEU LEU A . n A 1 166 SER 166 188 188 SER SER A . n A 1 167 ALA 167 189 189 ALA ALA A . n A 1 168 ASP 168 190 190 ASP ASP A . n A 1 169 ILE 169 191 191 ILE ILE A . n A 1 170 SER 170 192 192 SER SER A . n A 1 171 GLY 171 193 193 GLY GLY A . n A 1 172 ASN 172 194 194 ASN ASN A . n A 1 173 THR 173 195 195 THR THR A . n A 1 174 GLU 174 196 196 GLU GLU A . n A 1 175 ILE 175 197 197 ILE ILE A . n A 1 176 VAL 176 198 198 VAL VAL A . n A 1 177 LYS 177 199 199 LYS LYS A . n A 1 178 ALA 178 200 200 ALA ALA A . n A 1 179 LYS 179 201 201 LYS LYS A . n A 1 180 ALA 180 202 202 ALA ALA A . n A 1 181 LEU 181 203 203 LEU LEU A . n A 1 182 TYR 182 204 204 TYR TYR A . n A 1 183 ALA 183 205 205 ALA ALA A . n A 1 184 ARG 184 206 206 ARG ARG A . n A 1 185 VAL 185 207 207 VAL VAL A . n A 1 186 GLY 186 208 208 GLY GLY A . n A 1 187 VAL 187 209 209 VAL VAL A . n A 1 188 LEU 188 210 210 LEU LEU A . n A 1 189 ALA 189 211 211 ALA ALA A . n A 1 190 ASN 190 212 212 ASN ASN A . n A 1 191 GLY 191 213 213 GLY GLY A . n A 1 192 ALA 192 214 214 ALA ALA A . n A 1 193 ASP 193 215 215 ASP ASP A . n A 1 194 GLN 194 216 216 GLN GLN A . n A 1 195 ALA 195 217 217 ALA ALA A . n A 1 196 ILE 196 218 218 ILE ILE A . n A 1 197 TYR 197 219 219 TYR TYR A . n A 1 198 SER 198 220 220 SER SER A . n A 1 199 PRO 199 221 221 PRO PRO A . n A 1 200 VAL 200 222 222 VAL VAL A . n A 1 201 VAL 201 223 223 VAL VAL A . n A 1 202 ARG 202 224 224 ARG ARG A . n A 1 203 LEU 203 225 225 LEU LEU A . n A 1 204 LYS 204 226 226 LYS LYS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 301 301 MG MG A . C 3 GOL 1 302 302 GOL GOL A . D 4 CL 1 303 303 CL CL A . E 4 CL 1 304 304 CL CL A . F 5 HOH 1 401 388 HOH HOH A . F 5 HOH 2 402 323 HOH HOH A . F 5 HOH 3 403 411 HOH HOH A . F 5 HOH 4 404 405 HOH HOH A . F 5 HOH 5 405 372 HOH HOH A . F 5 HOH 6 406 362 HOH HOH A . F 5 HOH 7 407 329 HOH HOH A . F 5 HOH 8 408 404 HOH HOH A . F 5 HOH 9 409 325 HOH HOH A . F 5 HOH 10 410 434 HOH HOH A . F 5 HOH 11 411 382 HOH HOH A . F 5 HOH 12 412 393 HOH HOH A . F 5 HOH 13 413 415 HOH HOH A . F 5 HOH 14 414 425 HOH HOH A . F 5 HOH 15 415 387 HOH HOH A . F 5 HOH 16 416 331 HOH HOH A . F 5 HOH 17 417 386 HOH HOH A . F 5 HOH 18 418 452 HOH HOH A . F 5 HOH 19 419 473 HOH HOH A . F 5 HOH 20 420 356 HOH HOH A . F 5 HOH 21 421 334 HOH HOH A . F 5 HOH 22 422 394 HOH HOH A . F 5 HOH 23 423 468 HOH HOH A . F 5 HOH 24 424 348 HOH HOH A . F 5 HOH 25 425 441 HOH HOH A . F 5 HOH 26 426 416 HOH HOH A . F 5 HOH 27 427 398 HOH HOH A . F 5 HOH 28 428 449 HOH HOH A . F 5 HOH 29 429 410 HOH HOH A . F 5 HOH 30 430 408 HOH HOH A . F 5 HOH 31 431 433 HOH HOH A . F 5 HOH 32 432 322 HOH HOH A . F 5 HOH 33 433 324 HOH HOH A . F 5 HOH 34 434 430 HOH HOH A . F 5 HOH 35 435 471 HOH HOH A . F 5 HOH 36 436 379 HOH HOH A . F 5 HOH 37 437 443 HOH HOH A . F 5 HOH 38 438 373 HOH HOH A . F 5 HOH 39 439 320 HOH HOH A . F 5 HOH 40 440 420 HOH HOH A . F 5 HOH 41 441 397 HOH HOH A . F 5 HOH 42 442 419 HOH HOH A . F 5 HOH 43 443 366 HOH HOH A . F 5 HOH 44 444 317 HOH HOH A . F 5 HOH 45 445 365 HOH HOH A . F 5 HOH 46 446 326 HOH HOH A . F 5 HOH 47 447 390 HOH HOH A . F 5 HOH 48 448 466 HOH HOH A . F 5 HOH 49 449 330 HOH HOH A . F 5 HOH 50 450 346 HOH HOH A . F 5 HOH 51 451 395 HOH HOH A . F 5 HOH 52 452 418 HOH HOH A . F 5 HOH 53 453 337 HOH HOH A . F 5 HOH 54 454 383 HOH HOH A . F 5 HOH 55 455 403 HOH HOH A . F 5 HOH 56 456 341 HOH HOH A . F 5 HOH 57 457 429 HOH HOH A . F 5 HOH 58 458 364 HOH HOH A . F 5 HOH 59 459 476 HOH HOH A . F 5 HOH 60 460 321 HOH HOH A . F 5 HOH 61 461 360 HOH HOH A . F 5 HOH 62 462 457 HOH HOH A . F 5 HOH 63 463 439 HOH HOH A . F 5 HOH 64 464 465 HOH HOH A . F 5 HOH 65 465 456 HOH HOH A . F 5 HOH 66 466 455 HOH HOH A . F 5 HOH 67 467 463 HOH HOH A . F 5 HOH 68 468 464 HOH HOH A . F 5 HOH 69 469 380 HOH HOH A . F 5 HOH 70 470 477 HOH HOH A . F 5 HOH 71 471 400 HOH HOH A . F 5 HOH 72 472 392 HOH HOH A . F 5 HOH 73 473 414 HOH HOH A . F 5 HOH 74 474 450 HOH HOH A . F 5 HOH 75 475 413 HOH HOH A . F 5 HOH 76 476 467 HOH HOH A . F 5 HOH 77 477 448 HOH HOH A . F 5 HOH 78 478 399 HOH HOH A . F 5 HOH 79 479 422 HOH HOH A . F 5 HOH 80 480 447 HOH HOH A . F 5 HOH 81 481 305 HOH HOH A . F 5 HOH 82 482 306 HOH HOH A . F 5 HOH 83 483 307 HOH HOH A . F 5 HOH 84 484 308 HOH HOH A . F 5 HOH 85 485 309 HOH HOH A . F 5 HOH 86 486 310 HOH HOH A . F 5 HOH 87 487 311 HOH HOH A . F 5 HOH 88 488 312 HOH HOH A . F 5 HOH 89 489 313 HOH HOH A . F 5 HOH 90 490 314 HOH HOH A . F 5 HOH 91 491 315 HOH HOH A . F 5 HOH 92 492 316 HOH HOH A . F 5 HOH 93 493 318 HOH HOH A . F 5 HOH 94 494 319 HOH HOH A . F 5 HOH 95 495 327 HOH HOH A . F 5 HOH 96 496 328 HOH HOH A . F 5 HOH 97 497 332 HOH HOH A . F 5 HOH 98 498 333 HOH HOH A . F 5 HOH 99 499 335 HOH HOH A . F 5 HOH 100 500 336 HOH HOH A . F 5 HOH 101 501 338 HOH HOH A . F 5 HOH 102 502 339 HOH HOH A . F 5 HOH 103 503 340 HOH HOH A . F 5 HOH 104 504 342 HOH HOH A . F 5 HOH 105 505 343 HOH HOH A . F 5 HOH 106 506 344 HOH HOH A . F 5 HOH 107 507 345 HOH HOH A . F 5 HOH 108 508 347 HOH HOH A . F 5 HOH 109 509 349 HOH HOH A . F 5 HOH 110 510 350 HOH HOH A . F 5 HOH 111 511 351 HOH HOH A . F 5 HOH 112 512 352 HOH HOH A . F 5 HOH 113 513 353 HOH HOH A . F 5 HOH 114 514 354 HOH HOH A . F 5 HOH 115 515 355 HOH HOH A . F 5 HOH 116 516 357 HOH HOH A . F 5 HOH 117 517 358 HOH HOH A . F 5 HOH 118 518 359 HOH HOH A . F 5 HOH 119 519 361 HOH HOH A . F 5 HOH 120 520 363 HOH HOH A . F 5 HOH 121 521 367 HOH HOH A . F 5 HOH 122 522 368 HOH HOH A . F 5 HOH 123 523 369 HOH HOH A . F 5 HOH 124 524 370 HOH HOH A . F 5 HOH 125 525 371 HOH HOH A . F 5 HOH 126 526 374 HOH HOH A . F 5 HOH 127 527 375 HOH HOH A . F 5 HOH 128 528 376 HOH HOH A . F 5 HOH 129 529 377 HOH HOH A . F 5 HOH 130 530 378 HOH HOH A . F 5 HOH 131 531 381 HOH HOH A . F 5 HOH 132 532 384 HOH HOH A . F 5 HOH 133 533 385 HOH HOH A . F 5 HOH 134 534 389 HOH HOH A . F 5 HOH 135 535 391 HOH HOH A . F 5 HOH 136 536 396 HOH HOH A . F 5 HOH 137 537 401 HOH HOH A . F 5 HOH 138 538 402 HOH HOH A . F 5 HOH 139 539 406 HOH HOH A . F 5 HOH 140 540 407 HOH HOH A . F 5 HOH 141 541 409 HOH HOH A . F 5 HOH 142 542 412 HOH HOH A . F 5 HOH 143 543 417 HOH HOH A . F 5 HOH 144 544 421 HOH HOH A . F 5 HOH 145 545 423 HOH HOH A . F 5 HOH 146 546 424 HOH HOH A . F 5 HOH 147 547 426 HOH HOH A . F 5 HOH 148 548 427 HOH HOH A . F 5 HOH 149 549 428 HOH HOH A . F 5 HOH 150 550 431 HOH HOH A . F 5 HOH 151 551 432 HOH HOH A . F 5 HOH 152 552 435 HOH HOH A . F 5 HOH 153 553 436 HOH HOH A . F 5 HOH 154 554 437 HOH HOH A . F 5 HOH 155 555 438 HOH HOH A . F 5 HOH 156 556 440 HOH HOH A . F 5 HOH 157 557 442 HOH HOH A . F 5 HOH 158 558 444 HOH HOH A . F 5 HOH 159 559 445 HOH HOH A . F 5 HOH 160 560 446 HOH HOH A . F 5 HOH 161 561 451 HOH HOH A . F 5 HOH 162 562 453 HOH HOH A . F 5 HOH 163 563 454 HOH HOH A . F 5 HOH 164 564 458 HOH HOH A . F 5 HOH 165 565 459 HOH HOH A . F 5 HOH 166 566 460 HOH HOH A . F 5 HOH 167 567 461 HOH HOH A . F 5 HOH 168 568 462 HOH HOH A . F 5 HOH 169 569 469 HOH HOH A . F 5 HOH 170 570 470 HOH HOH A . F 5 HOH 171 571 472 HOH HOH A . F 5 HOH 172 572 474 HOH HOH A . F 5 HOH 173 573 475 HOH HOH A . F 5 HOH 174 574 478 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 103 A MSE 125 ? MET 'modified residue' 2 A MSE 116 A MSE 138 ? MET 'modified residue' 3 A MSE 121 A MSE 143 ? MET 'modified residue' 4 A MSE 135 A MSE 157 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 82 ? A GLU 104 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 416 ? 1_555 85.7 ? 2 OE1 ? A GLU 82 ? A GLU 104 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 439 ? 1_555 88.4 ? 3 O ? F HOH . ? A HOH 416 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 439 ? 1_555 96.4 ? 4 OE1 ? A GLU 82 ? A GLU 104 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OG ? A SER 170 ? A SER 192 ? 1_555 55.4 ? 5 O ? F HOH . ? A HOH 416 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OG ? A SER 170 ? A SER 192 ? 1_555 125.5 ? 6 O ? F HOH . ? A HOH 439 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OG ? A SER 170 ? A SER 192 ? 1_555 116.4 ? 7 OE1 ? A GLU 82 ? A GLU 104 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 402 ? 2_675 86.3 ? 8 O ? F HOH . ? A HOH 416 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 402 ? 2_675 90.3 ? 9 O ? F HOH . ? A HOH 439 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 402 ? 2_675 171.1 ? 10 OG ? A SER 170 ? A SER 192 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 402 ? 2_675 54.7 ? 11 OE1 ? A GLU 82 ? A GLU 104 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 450 ? 2_675 91.6 ? 12 O ? F HOH . ? A HOH 416 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 450 ? 2_675 177.2 ? 13 O ? F HOH . ? A HOH 439 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 450 ? 2_675 82.8 ? 14 OG ? A SER 170 ? A SER 192 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 450 ? 2_675 52.9 ? 15 O ? F HOH . ? A HOH 402 ? 2_675 MG ? B MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 450 ? 2_675 90.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-25 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' pdbx_struct_oper_list 3 2 'Structure model' software 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 2 'Structure model' '_software.classification' 4 3 'Structure model' '_citation_author.name' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 37.5799 _pdbx_refine_tls.origin_y 65.1055 _pdbx_refine_tls.origin_z 8.1515 _pdbx_refine_tls.T[1][1] -0.0506 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0041 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0136 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] -0.0470 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0034 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] -0.0292 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.7917 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.0157 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.5062 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.4181 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.1161 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.8339 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0369 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0513 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.0168 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.0269 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0431 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0169 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0109 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.1021 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0799 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 28 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 226 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{A|28 - 226}' # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.10 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHARP ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'November 3, 2014 BUILT=20141118' 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 5 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 2.10.2 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 7 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.2 8 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 9 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 65 ? ? -65.23 79.36 2 1 THR A 134 ? ? -109.15 -167.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 28 ? CG ? A ASP 6 CG 2 1 Y 1 A ASP 28 ? OD1 ? A ASP 6 OD1 3 1 Y 1 A ASP 28 ? OD2 ? A ASP 6 OD2 4 1 Y 1 A ASP 61 ? CG ? A ASP 39 CG 5 1 Y 1 A ASP 61 ? OD1 ? A ASP 39 OD1 6 1 Y 1 A ASP 61 ? OD2 ? A ASP 39 OD2 7 1 Y 1 A GLU 64 ? CG ? A GLU 42 CG 8 1 Y 1 A GLU 64 ? CD ? A GLU 42 CD 9 1 Y 1 A GLU 64 ? OE1 ? A GLU 42 OE1 10 1 Y 1 A GLU 64 ? OE2 ? A GLU 42 OE2 11 1 Y 1 A LYS 65 ? CG ? A LYS 43 CG 12 1 Y 1 A LYS 65 ? CD ? A LYS 43 CD 13 1 Y 1 A LYS 65 ? CE ? A LYS 43 CE 14 1 Y 1 A LYS 65 ? NZ ? A LYS 43 NZ 15 1 Y 1 A ASN 66 ? CG ? A ASN 44 CG 16 1 Y 1 A ASN 66 ? OD1 ? A ASN 44 OD1 17 1 Y 1 A ASN 66 ? ND2 ? A ASN 44 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 23 ? A GLY 1 2 1 Y 1 A LYS 24 ? A LYS 2 3 1 Y 1 A ASP 25 ? A ASP 3 4 1 Y 1 A ASN 26 ? A ASN 4 5 1 Y 1 A PHE 27 ? A PHE 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 GLYCEROL GOL 4 'CHLORIDE ION' CL 5 water HOH #