data_4Z4B # _entry.id 4Z4B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Z4B pdb_00004z4b 10.2210/pdb4z4b/pdb WWPDB D_1000208613 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-04 2 'Structure model' 1 1 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' diffrn_source 5 2 'Structure model' pdbx_prerelease_seq 6 2 'Structure model' pdbx_struct_conn_angle 7 2 'Structure model' pdbx_struct_oper_list 8 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 12 2 'Structure model' '_pdbx_struct_conn_angle.value' 13 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 14 2 'Structure model' '_struct_conn.pdbx_dist_value' 15 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4Z4B _pdbx_database_status.recvd_initial_deposition_date 2015-04-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wee, J.-Y.' 1 'Dobson, R.C.J.' 2 'White, J.M.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title '2-Pyridyl Hoechst - a New Generation DNA-Binding Radioprotector' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wee, J.-Y.' 1 ? primary 'Dobson, R.C.J.' 2 ? primary 'White, J.M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3') ; 3662.404 2 ? ? ? ? 2 non-polymer syn "5-(4-methylpiperazin-1-yl)-2'-(pyridin-2-yl)-1H,1'H-2,5'-bibenzimidazole" 409.486 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCAAATTTGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5-(4-methylpiperazin-1-yl)-2'-(pyridin-2-yl)-1H,1'H-2,5'-bibenzimidazole" 4L1 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4L1 non-polymer . "5-(4-methylpiperazin-1-yl)-2'-(pyridin-2-yl)-1H,1'H-2,5'-bibenzimidazole" ? 'C24 H23 N7' 409.486 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DA 4 16 16 DA DA B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DT 9 21 21 DT DT B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4L1 1 101 1 4L1 4L1 A . D 3 MG 1 102 1 MG MG A . E 4 HOH 1 201 65 HOH HOH A . E 4 HOH 2 202 57 HOH HOH A . E 4 HOH 3 203 39 HOH HOH A . E 4 HOH 4 204 8 HOH HOH A . E 4 HOH 5 205 17 HOH HOH A . E 4 HOH 6 206 67 HOH HOH A . E 4 HOH 7 207 16 HOH HOH A . E 4 HOH 8 208 18 HOH HOH A . E 4 HOH 9 209 38 HOH HOH A . E 4 HOH 10 210 50 HOH HOH A . E 4 HOH 11 211 7 HOH HOH A . E 4 HOH 12 212 1 HOH HOH A . E 4 HOH 13 213 29 HOH HOH A . E 4 HOH 14 214 26 HOH HOH A . E 4 HOH 15 215 48 HOH HOH A . E 4 HOH 16 216 37 HOH HOH A . E 4 HOH 17 217 11 HOH HOH A . E 4 HOH 18 218 27 HOH HOH A . E 4 HOH 19 219 5 HOH HOH A . E 4 HOH 20 220 12 HOH HOH A . E 4 HOH 21 221 13 HOH HOH A . E 4 HOH 22 222 62 HOH HOH A . E 4 HOH 23 223 59 HOH HOH A . E 4 HOH 24 224 28 HOH HOH A . E 4 HOH 25 225 30 HOH HOH A . E 4 HOH 26 226 46 HOH HOH A . E 4 HOH 27 227 15 HOH HOH A . E 4 HOH 28 228 2 HOH HOH A . E 4 HOH 29 229 3 HOH HOH A . E 4 HOH 30 230 21 HOH HOH A . E 4 HOH 31 231 32 HOH HOH A . E 4 HOH 32 232 25 HOH HOH A . E 4 HOH 33 233 10 HOH HOH A . E 4 HOH 34 234 63 HOH HOH A . E 4 HOH 35 235 53 HOH HOH A . F 4 HOH 1 101 66 HOH HOH B . F 4 HOH 2 102 45 HOH HOH B . F 4 HOH 3 103 24 HOH HOH B . F 4 HOH 4 104 49 HOH HOH B . F 4 HOH 5 105 55 HOH HOH B . F 4 HOH 6 106 4 HOH HOH B . F 4 HOH 7 107 36 HOH HOH B . F 4 HOH 8 108 35 HOH HOH B . F 4 HOH 9 109 9 HOH HOH B . F 4 HOH 10 110 31 HOH HOH B . F 4 HOH 11 111 34 HOH HOH B . F 4 HOH 12 112 23 HOH HOH B . F 4 HOH 13 113 61 HOH HOH B . F 4 HOH 14 114 14 HOH HOH B . F 4 HOH 15 115 44 HOH HOH B . F 4 HOH 16 116 60 HOH HOH B . F 4 HOH 17 117 58 HOH HOH B . F 4 HOH 18 118 19 HOH HOH B . F 4 HOH 19 119 6 HOH HOH B . F 4 HOH 20 120 51 HOH HOH B . F 4 HOH 21 121 22 HOH HOH B . F 4 HOH 22 122 20 HOH HOH B . F 4 HOH 23 123 33 HOH HOH B . F 4 HOH 24 124 52 HOH HOH B . F 4 HOH 25 125 68 HOH HOH B . F 4 HOH 26 126 54 HOH HOH B . F 4 HOH 27 127 41 HOH HOH B . F 4 HOH 28 128 64 HOH HOH B . F 4 HOH 29 129 56 HOH HOH B . F 4 HOH 30 130 43 HOH HOH B . F 4 HOH 31 131 42 HOH HOH B . F 4 HOH 32 132 47 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 4Z4B _cell.length_a 24.858 _cell.length_b 40.797 _cell.length_c 64.538 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z4B _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4Z4B _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;The hanging drops contained the following constituents (final drop concentrations): DNA 0.63 mM, Ligand 1 0.63 mM, MgCl2 2.1 mM, spermine 1.05 mM, MPD 4.2%. MgCl2 and spermine were made in 30 mM sodium cacodylate buffer at pH 7.0 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-11-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9567 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9567 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4Z4B _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.965 _reflns.d_resolution_low 40.8 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8900 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 0.313 _reflns_shell.d_res_high 1.965 _reflns_shell.d_res_low 2.01 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 90.2 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4Z4B _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9652 _refine.ls_d_res_low 34.485 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8900 _refine.ls_number_reflns_R_free 877 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.30 _refine.ls_percent_reflns_R_free 9.85 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1727 _refine.ls_R_factor_R_free 0.2107 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1684 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.31 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Unpublished model' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.80 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.27 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 585 _refine_hist.d_res_high 1.9652 _refine_hist.d_res_low 34.485 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 622 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.829 ? 955 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 35.596 ? 276 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.056 ? 94 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 30 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9652 2.0883 . . 160 1280 93.00 . . . 0.3290 . 0.2267 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0883 2.2495 . . 136 1355 100.00 . . . 0.3417 . 0.2142 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2495 2.4758 . . 146 1361 100.00 . . . 0.3024 . 0.2145 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4758 2.8339 . . 133 1371 100.00 . . . 0.2480 . 0.1989 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8339 3.5699 . . 150 1347 99.00 . . . 0.1853 . 0.1573 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5699 34.4900 . . 152 1309 97.00 . . . 0.1692 . 0.1416 . . . . . . . . . . # _struct.entry_id 4Z4B _struct.title '2-Pyridyl Hoechst - a New Generation DNA-Binding Radioprotector' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4Z4B _struct_keywords.text 'DNA, Hoechst' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4Z4B _struct_ref.pdbx_db_accession 4Z4B _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4Z4B A 1 ? 12 ? 4Z4B 1 ? 12 ? 1 12 2 1 4Z4B B 1 ? 12 ? 4Z4B 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 214 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 216 3_554 ? ? ? ? ? ? ? 2.085 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 228 3_554 ? ? ? ? ? ? ? 2.085 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 229 3_554 ? ? ? ? ? ? ? 2.137 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 B HOH 106 1_555 ? ? ? ? ? ? ? 2.149 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 212 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 214 ? 1_555 93.0 ? 2 O ? E HOH . ? A HOH 212 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 216 ? 3_554 100.8 ? 3 O ? E HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 216 ? 3_554 85.9 ? 4 O ? E HOH . ? A HOH 212 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 228 ? 3_554 171.4 ? 5 O ? E HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 228 ? 3_554 86.5 ? 6 O ? E HOH . ? A HOH 216 ? 3_554 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 228 ? 3_554 87.8 ? 7 O ? E HOH . ? A HOH 212 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 229 ? 3_554 89.9 ? 8 O ? E HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 229 ? 3_554 176.6 ? 9 O ? E HOH . ? A HOH 216 ? 3_554 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 229 ? 3_554 91.7 ? 10 O ? E HOH . ? A HOH 228 ? 3_554 MG ? D MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 229 ? 3_554 90.9 ? 11 O ? E HOH . ? A HOH 212 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 88.1 ? 12 O ? E HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 91.9 ? 13 O ? E HOH . ? A HOH 216 ? 3_554 MG ? D MG . ? A MG 102 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 171.0 ? 14 O ? E HOH . ? A HOH 228 ? 3_554 MG ? D MG . ? A MG 102 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 83.3 ? 15 O ? E HOH . ? A HOH 229 ? 3_554 MG ? D MG . ? A MG 102 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 90.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 4L1 101 ? 15 'binding site for residue 4L1 A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 15 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 15 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 15 DT A 9 ? DT A 9 . ? 1_555 ? 5 AC1 15 DG A 10 ? DG A 10 . ? 1_555 ? 6 AC1 15 DC A 11 ? DC A 11 . ? 1_555 ? 7 AC1 15 HOH E . ? HOH A 201 . ? 1_555 ? 8 AC1 15 HOH E . ? HOH A 206 . ? 1_555 ? 9 AC1 15 HOH E . ? HOH A 221 . ? 1_555 ? 10 AC1 15 DA B 5 ? DA B 17 . ? 1_555 ? 11 AC1 15 DA B 6 ? DA B 18 . ? 1_555 ? 12 AC1 15 DT B 7 ? DT B 19 . ? 1_555 ? 13 AC1 15 DT B 8 ? DT B 20 . ? 1_555 ? 14 AC1 15 DT B 9 ? DT B 21 . ? 1_555 ? 15 AC1 15 DG B 12 ? DG B 24 . ? 2_455 ? 16 AC2 6 HOH E . ? HOH A 212 . ? 1_555 ? 17 AC2 6 HOH E . ? HOH A 214 . ? 1_555 ? 18 AC2 6 HOH E . ? HOH A 216 . ? 3_554 ? 19 AC2 6 HOH E . ? HOH A 228 . ? 3_554 ? 20 AC2 6 HOH E . ? HOH A 229 . ? 3_554 ? 21 AC2 6 HOH F . ? HOH B 106 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 15 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 15 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.383 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.036 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 103.42 108.00 -4.58 0.70 N 2 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 103.72 108.00 -4.28 0.70 N 3 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 103.63 108.00 -4.37 0.70 N 4 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 103.54 108.00 -4.46 0.70 N 5 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 103.70 108.00 -4.30 0.70 N 6 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.51 108.30 3.21 0.30 N 7 1 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 102.33 108.00 -5.67 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4L1 CAN C N N 1 4L1 CAL C N N 2 4L1 NBD N N N 3 4L1 CAA C N N 4 4L1 CAM C N N 5 4L1 CAO C N N 6 4L1 NBE N N N 7 4L1 CAV C Y N 8 4L1 CAK C Y N 9 4L1 CAG C Y N 10 4L1 CAI C Y N 11 4L1 CBC C Y N 12 4L1 NAS N Y N 13 4L1 CBA C Y N 14 4L1 NAQ N Y N 15 4L1 CAX C Y N 16 4L1 CAU C Y N 17 4L1 CAJ C Y N 18 4L1 CAF C Y N 19 4L1 CAH C Y N 20 4L1 CBB C Y N 21 4L1 NAT N Y N 22 4L1 CAZ C Y N 23 4L1 NAR N Y N 24 4L1 CAY C Y N 25 4L1 CAW C Y N 26 4L1 NAP N Y N 27 4L1 CAD C Y N 28 4L1 CAB C Y N 29 4L1 CAC C Y N 30 4L1 CAE C Y N 31 4L1 HAN2 H N N 32 4L1 HAN1 H N N 33 4L1 HAL2 H N N 34 4L1 HAL1 H N N 35 4L1 HAA2 H N N 36 4L1 HAA3 H N N 37 4L1 HAA1 H N N 38 4L1 HAM2 H N N 39 4L1 HAM1 H N N 40 4L1 HAO2 H N N 41 4L1 HAO1 H N N 42 4L1 HAK1 H N N 43 4L1 HAG1 H N N 44 4L1 HAI1 H N N 45 4L1 H2 H N N 46 4L1 HAJ1 H N N 47 4L1 HAF1 H N N 48 4L1 HAH1 H N N 49 4L1 H4 H N N 50 4L1 HAD1 H N N 51 4L1 HAB1 H N N 52 4L1 HAC1 H N N 53 4L1 HAE1 H N N 54 DA OP3 O N N 55 DA P P N N 56 DA OP1 O N N 57 DA OP2 O N N 58 DA "O5'" O N N 59 DA "C5'" C N N 60 DA "C4'" C N R 61 DA "O4'" O N N 62 DA "C3'" C N S 63 DA "O3'" O N N 64 DA "C2'" C N N 65 DA "C1'" C N R 66 DA N9 N Y N 67 DA C8 C Y N 68 DA N7 N Y N 69 DA C5 C Y N 70 DA C6 C Y N 71 DA N6 N N N 72 DA N1 N Y N 73 DA C2 C Y N 74 DA N3 N Y N 75 DA C4 C Y N 76 DA HOP3 H N N 77 DA HOP2 H N N 78 DA "H5'" H N N 79 DA "H5''" H N N 80 DA "H4'" H N N 81 DA "H3'" H N N 82 DA "HO3'" H N N 83 DA "H2'" H N N 84 DA "H2''" H N N 85 DA "H1'" H N N 86 DA H8 H N N 87 DA H61 H N N 88 DA H62 H N N 89 DA H2 H N N 90 DC OP3 O N N 91 DC P P N N 92 DC OP1 O N N 93 DC OP2 O N N 94 DC "O5'" O N N 95 DC "C5'" C N N 96 DC "C4'" C N R 97 DC "O4'" O N N 98 DC "C3'" C N S 99 DC "O3'" O N N 100 DC "C2'" C N N 101 DC "C1'" C N R 102 DC N1 N N N 103 DC C2 C N N 104 DC O2 O N N 105 DC N3 N N N 106 DC C4 C N N 107 DC N4 N N N 108 DC C5 C N N 109 DC C6 C N N 110 DC HOP3 H N N 111 DC HOP2 H N N 112 DC "H5'" H N N 113 DC "H5''" H N N 114 DC "H4'" H N N 115 DC "H3'" H N N 116 DC "HO3'" H N N 117 DC "H2'" H N N 118 DC "H2''" H N N 119 DC "H1'" H N N 120 DC H41 H N N 121 DC H42 H N N 122 DC H5 H N N 123 DC H6 H N N 124 DG OP3 O N N 125 DG P P N N 126 DG OP1 O N N 127 DG OP2 O N N 128 DG "O5'" O N N 129 DG "C5'" C N N 130 DG "C4'" C N R 131 DG "O4'" O N N 132 DG "C3'" C N S 133 DG "O3'" O N N 134 DG "C2'" C N N 135 DG "C1'" C N R 136 DG N9 N Y N 137 DG C8 C Y N 138 DG N7 N Y N 139 DG C5 C Y N 140 DG C6 C N N 141 DG O6 O N N 142 DG N1 N N N 143 DG C2 C N N 144 DG N2 N N N 145 DG N3 N N N 146 DG C4 C Y N 147 DG HOP3 H N N 148 DG HOP2 H N N 149 DG "H5'" H N N 150 DG "H5''" H N N 151 DG "H4'" H N N 152 DG "H3'" H N N 153 DG "HO3'" H N N 154 DG "H2'" H N N 155 DG "H2''" H N N 156 DG "H1'" H N N 157 DG H8 H N N 158 DG H1 H N N 159 DG H21 H N N 160 DG H22 H N N 161 DT OP3 O N N 162 DT P P N N 163 DT OP1 O N N 164 DT OP2 O N N 165 DT "O5'" O N N 166 DT "C5'" C N N 167 DT "C4'" C N R 168 DT "O4'" O N N 169 DT "C3'" C N S 170 DT "O3'" O N N 171 DT "C2'" C N N 172 DT "C1'" C N R 173 DT N1 N N N 174 DT C2 C N N 175 DT O2 O N N 176 DT N3 N N N 177 DT C4 C N N 178 DT O4 O N N 179 DT C5 C N N 180 DT C7 C N N 181 DT C6 C N N 182 DT HOP3 H N N 183 DT HOP2 H N N 184 DT "H5'" H N N 185 DT "H5''" H N N 186 DT "H4'" H N N 187 DT "H3'" H N N 188 DT "HO3'" H N N 189 DT "H2'" H N N 190 DT "H2''" H N N 191 DT "H1'" H N N 192 DT H3 H N N 193 DT H71 H N N 194 DT H72 H N N 195 DT H73 H N N 196 DT H6 H N N 197 HOH O O N N 198 HOH H1 H N N 199 HOH H2 H N N 200 MG MG MG N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4L1 CAB CAC doub Y N 1 4L1 CAB CAD sing Y N 2 4L1 CAC CAE sing Y N 3 4L1 CAD NAP doub Y N 4 4L1 CAE CAW doub Y N 5 4L1 NAP CAW sing Y N 6 4L1 CAW CAY sing N N 7 4L1 CAY NAT sing Y N 8 4L1 CAY NAR doub Y N 9 4L1 NAT CBB sing Y N 10 4L1 NAR CAZ sing Y N 11 4L1 CBB CAZ doub Y N 12 4L1 CBB CAH sing Y N 13 4L1 CAZ CAJ sing Y N 14 4L1 CAH CAF doub Y N 15 4L1 CAJ CAU doub Y N 16 4L1 CAF CAU sing Y N 17 4L1 CAU CAX sing N N 18 4L1 CAX NAQ doub Y N 19 4L1 CAX NAS sing Y N 20 4L1 NAQ CBA sing Y N 21 4L1 NAS CBC sing Y N 22 4L1 CBA CBC doub Y N 23 4L1 CBA CAK sing Y N 24 4L1 CBC CAI sing Y N 25 4L1 CAK CAV doub Y N 26 4L1 CAI CAG doub Y N 27 4L1 CAV CAG sing Y N 28 4L1 CAV NBE sing N N 29 4L1 CAN NBE sing N N 30 4L1 CAN CAL sing N N 31 4L1 NBE CAO sing N N 32 4L1 CAL NBD sing N N 33 4L1 CAO CAM sing N N 34 4L1 NBD CAM sing N N 35 4L1 NBD CAA sing N N 36 4L1 CAN HAN2 sing N N 37 4L1 CAN HAN1 sing N N 38 4L1 CAL HAL2 sing N N 39 4L1 CAL HAL1 sing N N 40 4L1 CAA HAA2 sing N N 41 4L1 CAA HAA3 sing N N 42 4L1 CAA HAA1 sing N N 43 4L1 CAM HAM2 sing N N 44 4L1 CAM HAM1 sing N N 45 4L1 CAO HAO2 sing N N 46 4L1 CAO HAO1 sing N N 47 4L1 CAK HAK1 sing N N 48 4L1 CAG HAG1 sing N N 49 4L1 CAI HAI1 sing N N 50 4L1 NAS H2 sing N N 51 4L1 CAJ HAJ1 sing N N 52 4L1 CAF HAF1 sing N N 53 4L1 CAH HAH1 sing N N 54 4L1 NAT H4 sing N N 55 4L1 CAD HAD1 sing N N 56 4L1 CAB HAB1 sing N N 57 4L1 CAC HAC1 sing N N 58 4L1 CAE HAE1 sing N N 59 DA OP3 P sing N N 60 DA OP3 HOP3 sing N N 61 DA P OP1 doub N N 62 DA P OP2 sing N N 63 DA P "O5'" sing N N 64 DA OP2 HOP2 sing N N 65 DA "O5'" "C5'" sing N N 66 DA "C5'" "C4'" sing N N 67 DA "C5'" "H5'" sing N N 68 DA "C5'" "H5''" sing N N 69 DA "C4'" "O4'" sing N N 70 DA "C4'" "C3'" sing N N 71 DA "C4'" "H4'" sing N N 72 DA "O4'" "C1'" sing N N 73 DA "C3'" "O3'" sing N N 74 DA "C3'" "C2'" sing N N 75 DA "C3'" "H3'" sing N N 76 DA "O3'" "HO3'" sing N N 77 DA "C2'" "C1'" sing N N 78 DA "C2'" "H2'" sing N N 79 DA "C2'" "H2''" sing N N 80 DA "C1'" N9 sing N N 81 DA "C1'" "H1'" sing N N 82 DA N9 C8 sing Y N 83 DA N9 C4 sing Y N 84 DA C8 N7 doub Y N 85 DA C8 H8 sing N N 86 DA N7 C5 sing Y N 87 DA C5 C6 sing Y N 88 DA C5 C4 doub Y N 89 DA C6 N6 sing N N 90 DA C6 N1 doub Y N 91 DA N6 H61 sing N N 92 DA N6 H62 sing N N 93 DA N1 C2 sing Y N 94 DA C2 N3 doub Y N 95 DA C2 H2 sing N N 96 DA N3 C4 sing Y N 97 DC OP3 P sing N N 98 DC OP3 HOP3 sing N N 99 DC P OP1 doub N N 100 DC P OP2 sing N N 101 DC P "O5'" sing N N 102 DC OP2 HOP2 sing N N 103 DC "O5'" "C5'" sing N N 104 DC "C5'" "C4'" sing N N 105 DC "C5'" "H5'" sing N N 106 DC "C5'" "H5''" sing N N 107 DC "C4'" "O4'" sing N N 108 DC "C4'" "C3'" sing N N 109 DC "C4'" "H4'" sing N N 110 DC "O4'" "C1'" sing N N 111 DC "C3'" "O3'" sing N N 112 DC "C3'" "C2'" sing N N 113 DC "C3'" "H3'" sing N N 114 DC "O3'" "HO3'" sing N N 115 DC "C2'" "C1'" sing N N 116 DC "C2'" "H2'" sing N N 117 DC "C2'" "H2''" sing N N 118 DC "C1'" N1 sing N N 119 DC "C1'" "H1'" sing N N 120 DC N1 C2 sing N N 121 DC N1 C6 sing N N 122 DC C2 O2 doub N N 123 DC C2 N3 sing N N 124 DC N3 C4 doub N N 125 DC C4 N4 sing N N 126 DC C4 C5 sing N N 127 DC N4 H41 sing N N 128 DC N4 H42 sing N N 129 DC C5 C6 doub N N 130 DC C5 H5 sing N N 131 DC C6 H6 sing N N 132 DG OP3 P sing N N 133 DG OP3 HOP3 sing N N 134 DG P OP1 doub N N 135 DG P OP2 sing N N 136 DG P "O5'" sing N N 137 DG OP2 HOP2 sing N N 138 DG "O5'" "C5'" sing N N 139 DG "C5'" "C4'" sing N N 140 DG "C5'" "H5'" sing N N 141 DG "C5'" "H5''" sing N N 142 DG "C4'" "O4'" sing N N 143 DG "C4'" "C3'" sing N N 144 DG "C4'" "H4'" sing N N 145 DG "O4'" "C1'" sing N N 146 DG "C3'" "O3'" sing N N 147 DG "C3'" "C2'" sing N N 148 DG "C3'" "H3'" sing N N 149 DG "O3'" "HO3'" sing N N 150 DG "C2'" "C1'" sing N N 151 DG "C2'" "H2'" sing N N 152 DG "C2'" "H2''" sing N N 153 DG "C1'" N9 sing N N 154 DG "C1'" "H1'" sing N N 155 DG N9 C8 sing Y N 156 DG N9 C4 sing Y N 157 DG C8 N7 doub Y N 158 DG C8 H8 sing N N 159 DG N7 C5 sing Y N 160 DG C5 C6 sing N N 161 DG C5 C4 doub Y N 162 DG C6 O6 doub N N 163 DG C6 N1 sing N N 164 DG N1 C2 sing N N 165 DG N1 H1 sing N N 166 DG C2 N2 sing N N 167 DG C2 N3 doub N N 168 DG N2 H21 sing N N 169 DG N2 H22 sing N N 170 DG N3 C4 sing N N 171 DT OP3 P sing N N 172 DT OP3 HOP3 sing N N 173 DT P OP1 doub N N 174 DT P OP2 sing N N 175 DT P "O5'" sing N N 176 DT OP2 HOP2 sing N N 177 DT "O5'" "C5'" sing N N 178 DT "C5'" "C4'" sing N N 179 DT "C5'" "H5'" sing N N 180 DT "C5'" "H5''" sing N N 181 DT "C4'" "O4'" sing N N 182 DT "C4'" "C3'" sing N N 183 DT "C4'" "H4'" sing N N 184 DT "O4'" "C1'" sing N N 185 DT "C3'" "O3'" sing N N 186 DT "C3'" "C2'" sing N N 187 DT "C3'" "H3'" sing N N 188 DT "O3'" "HO3'" sing N N 189 DT "C2'" "C1'" sing N N 190 DT "C2'" "H2'" sing N N 191 DT "C2'" "H2''" sing N N 192 DT "C1'" N1 sing N N 193 DT "C1'" "H1'" sing N N 194 DT N1 C2 sing N N 195 DT N1 C6 sing N N 196 DT C2 O2 doub N N 197 DT C2 N3 sing N N 198 DT N3 C4 sing N N 199 DT N3 H3 sing N N 200 DT C4 O4 doub N N 201 DT C4 C5 sing N N 202 DT C5 C7 sing N N 203 DT C5 C6 doub N N 204 DT C7 H71 sing N N 205 DT C7 H72 sing N N 206 DT C7 H73 sing N N 207 DT C6 H6 sing N N 208 HOH O H1 sing N N 209 HOH O H2 sing N N 210 # _ndb_struct_conf_na.entry_id 4Z4B _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.268 -0.254 0.133 -1.033 -11.680 1.687 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.274 -0.082 0.421 6.364 -10.108 -1.442 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.233 -0.059 -0.044 -1.698 -3.112 2.612 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 0.101 -0.038 -0.070 14.001 -15.032 -1.024 4 A_DA4:DT21_B A 4 ? B 21 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 0.139 -0.127 0.045 12.140 -19.161 0.747 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.238 -0.084 -0.027 3.631 -20.933 4.191 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.143 -0.090 0.111 -2.765 -22.101 7.626 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.296 -0.094 0.004 -6.985 -15.365 3.559 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DT 9 1_555 B DA 4 1_555 -0.051 -0.048 -0.017 -13.394 -10.824 -2.735 9 A_DT9:DA16_B A 9 ? B 16 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 -0.203 -0.110 0.147 11.414 -1.867 1.061 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.152 -0.293 0.255 9.385 -27.275 -6.087 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.307 -0.273 -0.045 6.348 10.876 -1.994 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.344 0.078 3.148 -3.534 4.565 34.363 -0.543 0.054 3.151 7.660 5.929 34.831 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.744 0.485 3.561 4.752 -7.357 41.211 1.504 -0.501 3.489 -10.311 -6.660 42.092 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 -0.519 0.723 3.080 3.172 5.400 27.459 0.280 1.776 3.084 11.193 -6.575 28.151 3 AA_DC3DA4:DT21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DA 4 1_555 B DT 9 1_555 A DA 5 1_555 B DT 8 1_555 0.232 0.092 3.362 -0.294 4.424 35.946 -0.493 -0.416 3.347 7.135 0.474 36.209 4 AA_DA4DA5:DT20DT21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.107 -0.228 3.411 -1.407 5.864 38.907 -1.060 -0.331 3.337 8.739 2.097 39.353 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.053 -0.682 3.306 -1.257 1.465 28.820 -1.695 -0.387 3.262 2.939 2.522 28.884 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.359 -0.139 3.285 1.427 1.267 36.704 -0.394 0.764 3.262 2.010 -2.264 36.752 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DT 9 1_555 B DA 4 1_555 -0.221 0.031 3.411 1.109 -0.769 40.434 0.134 0.449 3.403 -1.112 -1.604 40.456 8 AA_DT8DT9:DA16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 0.568 1.157 2.933 -2.534 5.212 26.485 1.254 -1.803 3.034 11.206 5.449 27.101 9 AA_DT9DG10:DC15DA16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.127 0.746 3.403 -2.405 -12.360 44.238 2.049 1.233 3.151 -16.031 3.119 45.908 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.126 0.761 3.587 3.524 -5.431 37.028 1.959 -1.244 3.533 -8.472 -5.498 37.570 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 4Z4B _atom_sites.fract_transf_matrix[1][1] 0.040228 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024512 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015495 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P # loop_