HEADER OXIDOREDUCTASE 10-MAY-15 4ZQM TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE TITLE 2 DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS IN THE COMPLEX WITH XMP TITLE 3 AND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE,INOSINE-5'- COMPND 3 MONOPHOSPHATE DEHYDROGENASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 1-125 AND 253-529 LINKED BY LINKER (GLY GLY); COMPND 6 SYNONYM: IMPDH; COMPND 7 EC: 1.1.1.205,1.1.1.205; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: GUAB, GUAB2, RV3411C, MTCY78.17; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS IMPDH, DELTA-CBS, MYCOBACTERIUM TUBERCULOSIS, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.MAKOWSKA-GRZYSKA,M.GU,M.KAVITHA,L.HEDSTROM, AUTHOR 2 W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 5 30-MAR-22 4ZQM 1 REMARK REVDAT 4 22-NOV-17 4ZQM 1 REMARK REVDAT 3 08-FEB-17 4ZQM 1 AUTHOR REVDAT 2 16-DEC-15 4ZQM 1 JRNL REVDAT 1 17-JUN-15 4ZQM 0 JRNL AUTH M.MAKOWSKA-GRZYSKA,Y.KIM,S.K.GORLA,Y.WEI,K.MANDAPATI, JRNL AUTH 2 M.ZHANG,N.MALTSEVA,G.MODI,H.I.BOSHOFF,M.GU,C.ALDRICH, JRNL AUTH 3 G.D.CUNY,L.HEDSTROM,A.JOACHIMIAK JRNL TITL MYCOBACTERIUM TUBERCULOSIS IMPDH IN COMPLEXES WITH JRNL TITL 2 SUBSTRATES, PRODUCTS AND ANTITUBERCULAR COMPOUNDS. JRNL REF PLOS ONE V. 10 38976 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26440283 JRNL DOI 10.1371/JOURNAL.PONE.0138976 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 42579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8109 - 4.0342 1.00 2610 137 0.1357 0.1515 REMARK 3 2 4.0342 - 3.2027 0.99 2535 136 0.1471 0.1691 REMARK 3 3 3.2027 - 2.7980 1.00 2553 126 0.1618 0.2185 REMARK 3 4 2.7980 - 2.5423 1.00 2547 153 0.1604 0.1949 REMARK 3 5 2.5423 - 2.3601 1.00 2506 163 0.1624 0.1913 REMARK 3 6 2.3601 - 2.2210 0.99 2474 196 0.1784 0.2109 REMARK 3 7 2.2210 - 2.1098 1.00 2508 137 0.1649 0.1939 REMARK 3 8 2.1098 - 2.0179 1.00 2583 133 0.1615 0.2030 REMARK 3 9 2.0179 - 1.9403 1.00 2525 115 0.1739 0.2008 REMARK 3 10 1.9403 - 1.8733 0.99 2568 125 0.2267 0.2620 REMARK 3 11 1.8733 - 1.8147 1.00 2568 111 0.1783 0.2023 REMARK 3 12 1.8147 - 1.7629 1.00 2492 150 0.1699 0.1879 REMARK 3 13 1.7629 - 1.7165 1.00 2538 132 0.1755 0.2084 REMARK 3 14 1.7165 - 1.6746 1.00 2536 124 0.1878 0.2302 REMARK 3 15 1.6746 - 1.6365 0.99 2508 144 0.2089 0.2628 REMARK 3 16 1.6365 - 1.6020 0.91 2343 103 0.2313 0.2862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2495 REMARK 3 ANGLE : 1.325 3409 REMARK 3 CHIRALITY : 0.051 413 REMARK 3 PLANARITY : 0.006 437 REMARK 3 DIHEDRAL : 16.294 906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0085 5.9805 -12.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.2127 T22: 0.2301 REMARK 3 T33: 0.1515 T12: 0.0164 REMARK 3 T13: 0.0123 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8383 L22: 6.1915 REMARK 3 L33: 0.3937 L12: 1.3929 REMARK 3 L13: 0.3835 L23: 0.9114 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.0627 S13: -0.0150 REMARK 3 S21: -0.3410 S22: -0.0070 S23: -0.1356 REMARK 3 S31: 0.0043 S32: -0.0009 S33: -0.0406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2949 27.7942 -4.1236 REMARK 3 T TENSOR REMARK 3 T11: 0.1998 T22: 0.1837 REMARK 3 T33: 0.2495 T12: 0.0158 REMARK 3 T13: -0.0158 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.7731 L22: 2.3693 REMARK 3 L33: 1.0933 L12: 1.2805 REMARK 3 L13: -0.2028 L23: 0.1558 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: 0.1255 S13: 0.4079 REMARK 3 S21: -0.1789 S22: 0.0215 S23: 0.2702 REMARK 3 S31: -0.1931 S32: 0.0079 S33: 0.0527 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.3775 21.0271 9.3916 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.2786 REMARK 3 T33: 0.2637 T12: 0.0040 REMARK 3 T13: 0.0599 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 3.4125 L22: 2.3357 REMARK 3 L33: 1.7237 L12: 1.6592 REMARK 3 L13: -0.0973 L23: -0.1075 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: -0.4190 S13: 0.4389 REMARK 3 S21: 0.3046 S22: -0.1893 S23: 0.4424 REMARK 3 S31: -0.1671 S32: -0.2572 S33: 0.0795 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.5304 16.6510 1.6652 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.2706 REMARK 3 T33: 0.3413 T12: 0.0250 REMARK 3 T13: 0.0266 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 3.8123 L22: 3.8378 REMARK 3 L33: 2.6853 L12: 1.3058 REMARK 3 L13: 0.5322 L23: 0.4834 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0121 S13: 0.2805 REMARK 3 S21: -0.0188 S22: -0.0960 S23: 0.7055 REMARK 3 S31: -0.0878 S32: -0.4999 S33: 0.0830 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4330 11.4839 -6.3935 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.2463 REMARK 3 T33: 0.2843 T12: -0.0116 REMARK 3 T13: -0.0214 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.2968 L22: 4.6177 REMARK 3 L33: 1.8519 L12: -2.1132 REMARK 3 L13: -1.1580 L23: 0.8914 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.0688 S13: 0.0332 REMARK 3 S21: -0.0083 S22: 0.0462 S23: 0.3655 REMARK 3 S31: 0.0391 S32: -0.2608 S33: 0.0242 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6278 11.9147 -7.5016 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1734 REMARK 3 T33: 0.1805 T12: -0.0248 REMARK 3 T13: -0.0151 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.1914 L22: 3.1469 REMARK 3 L33: 3.2035 L12: 0.6335 REMARK 3 L13: -0.9821 L23: 1.0565 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.1392 S13: 0.0932 REMARK 3 S21: -0.0862 S22: -0.0991 S23: 0.1793 REMARK 3 S31: -0.0672 S32: -0.0992 S33: 0.0809 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8733 7.1887 -8.1762 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.1806 REMARK 3 T33: 0.1678 T12: -0.0049 REMARK 3 T13: -0.0030 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.8980 L22: 0.9185 REMARK 3 L33: 0.6424 L12: 0.5968 REMARK 3 L13: -0.1856 L23: 0.5434 REMARK 3 S TENSOR REMARK 3 S11: -0.0503 S12: 0.0140 S13: 0.0228 REMARK 3 S21: -0.1393 S22: 0.0035 S23: -0.1666 REMARK 3 S31: -0.0434 S32: -0.0594 S33: 0.1139 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 368 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1689 17.3939 -2.9063 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1886 REMARK 3 T33: 0.1832 T12: -0.0002 REMARK 3 T13: 0.0033 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.5307 L22: 2.0612 REMARK 3 L33: 1.1640 L12: 1.1174 REMARK 3 L13: -0.2621 L23: 1.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.3300 S13: -0.0438 REMARK 3 S21: 0.1337 S22: -0.0075 S23: -0.0958 REMARK 3 S31: 0.1535 S32: 0.0025 S33: -0.0431 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9795 15.2214 19.2573 REMARK 3 T TENSOR REMARK 3 T11: 0.4735 T22: 0.5058 REMARK 3 T33: 0.1999 T12: 0.0232 REMARK 3 T13: -0.0432 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.8633 L22: 3.8022 REMARK 3 L33: 4.2080 L12: 0.7655 REMARK 3 L13: 0.7272 L23: -0.0740 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.9865 S13: 0.0209 REMARK 3 S21: 0.9805 S22: 0.1379 S23: -0.2728 REMARK 3 S31: 0.4084 S32: 0.2694 S33: -0.0890 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 423 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8386 6.7375 13.3812 REMARK 3 T TENSOR REMARK 3 T11: 0.4332 T22: 0.3313 REMARK 3 T33: 0.2418 T12: -0.0133 REMARK 3 T13: 0.0175 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.8865 L22: 9.1047 REMARK 3 L33: 4.2638 L12: 0.7371 REMARK 3 L13: 0.5326 L23: 3.5112 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: -0.0521 S13: -0.5306 REMARK 3 S21: 0.3218 S22: 0.1442 S23: 0.0920 REMARK 3 S31: 0.7370 S32: -0.2160 S33: -0.2529 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 470 THROUGH 509 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2898 22.9962 -3.0409 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.1493 REMARK 3 T33: 0.1677 T12: -0.0120 REMARK 3 T13: -0.0145 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.0839 L22: 2.6383 REMARK 3 L33: 2.2389 L12: 0.5144 REMARK 3 L13: -0.7940 L23: -0.3637 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: -0.1169 S13: 0.1048 REMARK 3 S21: 0.1235 S22: -0.0511 S23: 0.0078 REMARK 3 S31: -0.1296 S32: 0.0045 S33: -0.0340 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42708 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M MAGNESIUM FORMATE DYHYDRATE, 0.1 REMARK 280 M TRIS PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.07700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.07700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.75600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.07700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.07700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.75600 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 44.07700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 44.07700 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.75600 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 44.07700 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 44.07700 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.75600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D4). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 GLU A 9 REMARK 465 ASP A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 TYR A 19 REMARK 465 VAL A 20 REMARK 465 ARG A 21 REMARK 465 MET A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 LEU A 25 REMARK 465 THR A 26 REMARK 465 THR A 27 REMARK 465 ARG A 431 REMARK 465 GLY A 432 REMARK 465 ARG A 433 REMARK 465 GLY A 434 REMARK 465 GLY A 435 REMARK 465 ALA A 436 REMARK 465 THR A 437 REMARK 465 SER A 438 REMARK 465 TYR A 439 REMARK 465 SER A 440 REMARK 465 LYS A 441 REMARK 465 ASP A 442 REMARK 465 ARG A 443 REMARK 465 TYR A 444 REMARK 465 PHE A 445 REMARK 465 ALA A 446 REMARK 465 ASP A 447 REMARK 465 ASP A 448 REMARK 465 ALA A 449 REMARK 465 LEU A 450 REMARK 465 SER A 451 REMARK 465 GLU A 452 REMARK 465 ASP A 453 REMARK 465 LYS A 454 REMARK 465 LYS A 510 REMARK 465 GLU A 511 REMARK 465 SER A 512 REMARK 465 HIS A 513 REMARK 465 PRO A 514 REMARK 465 HIS A 515 REMARK 465 ASP A 516 REMARK 465 VAL A 517 REMARK 465 ALA A 518 REMARK 465 MET A 519 REMARK 465 THR A 520 REMARK 465 VAL A 521 REMARK 465 GLU A 522 REMARK 465 ALA A 523 REMARK 465 PRO A 524 REMARK 465 ASN A 525 REMARK 465 TYR A 526 REMARK 465 TYR A 527 REMARK 465 ALA A 528 REMARK 465 ARG A 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 88 -53.74 -127.39 REMARK 500 GLU A 90 -165.16 -119.34 REMARK 500 ASN A 109 53.76 -91.79 REMARK 500 SER A 125 34.34 -96.82 REMARK 500 HIS A 286 85.69 -151.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91646 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4ZQN RELATED DB: PDB REMARK 900 RELATED ID: 4ZQO RELATED DB: PDB REMARK 900 RELATED ID: 4ZQP RELATED DB: PDB REMARK 900 RELATED ID: 4ZQR RELATED DB: PDB DBREF 4ZQM A 1 125 UNP P9WKI7 IMDH_MYCTU 1 125 DBREF 4ZQM A 253 529 UNP P9WKI7 IMDH_MYCTU 253 529 SEQADV 4ZQM SER A -2 UNP P9WKI7 EXPRESSION TAG SEQADV 4ZQM ASN A -1 UNP P9WKI7 EXPRESSION TAG SEQADV 4ZQM ALA A 0 UNP P9WKI7 EXPRESSION TAG SEQADV 4ZQM GLY A 126 UNP P9WKI7 LINKER SEQADV 4ZQM GLY A 127 UNP P9WKI7 LINKER SEQRES 1 A 407 SER ASN ALA MET SER ARG GLY MET SER GLY LEU GLU ASP SEQRES 2 A 407 SER SER ASP LEU VAL VAL SER PRO TYR VAL ARG MET GLY SEQRES 3 A 407 GLY LEU THR THR ASP PRO VAL PRO THR GLY GLY ASP ASP SEQRES 4 A 407 PRO HIS LYS VAL ALA MET LEU GLY LEU THR PHE ASP ASP SEQRES 5 A 407 VAL LEU LEU LEU PRO ALA ALA SER ASP VAL VAL PRO ALA SEQRES 6 A 407 THR ALA ASP THR SER SER GLN LEU THR LYS LYS ILE ARG SEQRES 7 A 407 LEU LYS VAL PRO LEU VAL SER SER ALA MET ASP THR VAL SEQRES 8 A 407 THR GLU SER ARG MET ALA ILE ALA MET ALA ARG ALA GLY SEQRES 9 A 407 GLY MET GLY VAL LEU HIS ARG ASN LEU PRO VAL ALA GLU SEQRES 10 A 407 GLN ALA GLY GLN VAL GLU MET VAL LYS ARG SER GLY GLY SEQRES 11 A 407 LEU LEU VAL GLY ALA ALA VAL GLY VAL GLY GLY ASP ALA SEQRES 12 A 407 TRP VAL ARG ALA MET MET LEU VAL ASP ALA GLY VAL ASP SEQRES 13 A 407 VAL LEU VAL VAL ASP THR ALA HIS ALA HIS ASN ARG LEU SEQRES 14 A 407 VAL LEU ASP MET VAL GLY LYS LEU LYS SER GLU VAL GLY SEQRES 15 A 407 ASP ARG VAL GLU VAL VAL GLY GLY ASN VAL ALA THR ARG SEQRES 16 A 407 SER ALA ALA ALA ALA LEU VAL ASP ALA GLY ALA ASP ALA SEQRES 17 A 407 VAL LYS VAL GLY VAL GLY PRO GLY SER ILE CYS THR THR SEQRES 18 A 407 ARG VAL VAL ALA GLY VAL GLY ALA PRO GLN ILE THR ALA SEQRES 19 A 407 ILE LEU GLU ALA VAL ALA ALA CYS ARG PRO ALA GLY VAL SEQRES 20 A 407 PRO VAL ILE ALA ASP GLY GLY LEU GLN TYR SER GLY ASP SEQRES 21 A 407 ILE ALA LYS ALA LEU ALA ALA GLY ALA SER THR ALA MET SEQRES 22 A 407 LEU GLY SER LEU LEU ALA GLY THR ALA GLU ALA PRO GLY SEQRES 23 A 407 GLU LEU ILE PHE VAL ASN GLY LYS GLN TYR LYS SER TYR SEQRES 24 A 407 ARG GLY MET GLY SER LEU GLY ALA MET ARG GLY ARG GLY SEQRES 25 A 407 GLY ALA THR SER TYR SER LYS ASP ARG TYR PHE ALA ASP SEQRES 26 A 407 ASP ALA LEU SER GLU ASP LYS LEU VAL PRO GLU GLY ILE SEQRES 27 A 407 GLU GLY ARG VAL PRO PHE ARG GLY PRO LEU SER SER VAL SEQRES 28 A 407 ILE HIS GLN LEU THR GLY GLY LEU ARG ALA ALA MET GLY SEQRES 29 A 407 TYR THR GLY SER PRO THR ILE GLU VAL LEU GLN GLN ALA SEQRES 30 A 407 GLN PHE VAL ARG ILE THR PRO ALA GLY LEU LYS GLU SER SEQRES 31 A 407 HIS PRO HIS ASP VAL ALA MET THR VAL GLU ALA PRO ASN SEQRES 32 A 407 TYR TYR ALA ARG HET XMP A 601 24 HET NAD A 602 44 HETNAM XMP XANTHOSINE-5'-MONOPHOSPHATE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETSYN XMP 5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE FORMUL 2 XMP C10 H14 N4 O9 P 1+ FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 HOH *161(H2 O) HELIX 1 AA1 THR A 46 ASP A 48 5 3 HELIX 2 AA2 VAL A 60 ALA A 64 5 5 HELIX 3 AA3 GLU A 90 ALA A 100 1 11 HELIX 4 AA4 PRO A 111 ARG A 124 1 14 HELIX 5 AA5 GLY A 262 ALA A 275 1 14 HELIX 6 AA6 ASN A 289 GLY A 304 1 16 HELIX 7 AA7 THR A 316 GLY A 327 1 12 HELIX 8 AA8 THR A 342 ALA A 347 1 6 HELIX 9 AA9 PRO A 352 ARG A 365 1 14 HELIX 10 AB1 PRO A 366 GLY A 368 5 3 HELIX 11 AB2 TYR A 379 ALA A 389 1 11 HELIX 12 AB3 GLY A 397 GLY A 402 1 6 HELIX 13 AB4 PRO A 469 GLY A 489 1 21 HELIX 14 AB5 THR A 492 GLN A 497 1 6 HELIX 15 AB6 THR A 505 LEU A 509 5 5 SHEET 1 AA1 2 VAL A 50 LEU A 52 0 SHEET 2 AA1 2 PHE A 501 ARG A 503 -1 O VAL A 502 N LEU A 51 SHEET 1 AA2 2 SER A 68 GLN A 69 0 SHEET 2 AA2 2 ARG A 75 LEU A 76 -1 O LEU A 76 N SER A 68 SHEET 1 AA3 9 LEU A 80 SER A 82 0 SHEET 2 AA3 9 MET A 103 LEU A 106 1 O MET A 103 N SER A 82 SHEET 3 AA3 9 GLY A 256 VAL A 259 1 O GLY A 256 N LEU A 106 SHEET 4 AA3 9 VAL A 279 ASP A 283 1 O ASP A 283 N VAL A 259 SHEET 5 AA3 9 GLU A 308 VAL A 314 1 O GLU A 308 N LEU A 280 SHEET 6 AA3 9 ALA A 330 VAL A 333 1 O LYS A 332 N GLY A 311 SHEET 7 AA3 9 VAL A 371 ASP A 374 1 O ILE A 372 N VAL A 333 SHEET 8 AA3 9 THR A 393 LEU A 396 1 O MET A 395 N ALA A 373 SHEET 9 AA3 9 LEU A 80 SER A 82 1 N VAL A 81 O LEU A 396 SHEET 1 AA4 3 ILE A 411 VAL A 413 0 SHEET 2 AA4 3 LYS A 416 ARG A 422 -1 O TYR A 418 N ILE A 411 SHEET 3 AA4 3 GLU A 461 PRO A 465 -1 O GLY A 462 N TYR A 421 CISPEP 1 GLY A 312 ASN A 313 0 -1.78 SITE 1 AC1 26 SER A 83 MET A 85 ASN A 313 GLY A 338 SITE 2 AC1 26 SER A 339 ILE A 340 CYS A 341 THR A 343 SITE 3 AC1 26 ASP A 374 GLY A 375 GLY A 376 MET A 395 SITE 4 AC1 26 GLY A 397 SER A 398 TYR A 421 GLY A 423 SITE 5 AC1 26 MET A 424 GLY A 425 GLU A 458 GLY A 459 SITE 6 AC1 26 NAD A 602 HOH A 725 HOH A 762 HOH A 765 SITE 7 AC1 26 HOH A 780 HOH A 820 SITE 1 AC2 19 VAL A 59 ARG A 108 ASP A 283 THR A 284 SITE 2 AC2 19 ALA A 285 HIS A 286 ASN A 289 THR A 343 SITE 3 AC2 19 MET A 424 GLU A 458 ALA A 483 GLY A 486 SITE 4 AC2 19 TYR A 487 XMP A 601 HOH A 707 HOH A 708 SITE 5 AC2 19 HOH A 724 HOH A 727 HOH A 741 CRYST1 88.154 88.154 85.512 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011694 0.00000