data_4ZYA # _entry.id 4ZYA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.303 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ZYA WWPDB D_1000210012 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 4ZWF _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZYA _pdbx_database_status.recvd_initial_deposition_date 2015-05-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, J.S.' 1 'Park, M.C.' 2 'Goughnour, P.' 3 'Kim, H.S.' 4 'Kim, S.J.' 5 'Kim, H.J.' 6 'Kim, S.H.' 7 'Han, B.W.' 8 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int. J. Biol. Macromol.' _citation.journal_id_ASTM IJBMDR _citation.journal_id_CSD 0708 _citation.journal_id_ISSN 1879-0003 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 120 _citation.language ? _citation.page_first 835 _citation.page_last 845 _citation.title 'Unique N-terminal extension domain of human asparaginyl-tRNA synthetase elicits CCR3-mediated chemokine activity.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2018.08.171 _citation.pdbx_database_id_PubMed 30171954 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, J.S.' 1 ? primary 'Park, M.C.' 2 ? primary 'Lee, K.Y.' 3 ? primary 'Goughnour, P.C.' 4 ? primary 'Jeong, S.J.' 5 ? primary 'Kim, H.S.' 6 ? primary 'Kim, H.J.' 7 ? primary 'Lee, B.J.' 8 ? primary 'Kim, S.' 9 ? primary 'Han, B.W.' 10 ? # _cell.entry_id 4ZYA _cell.length_a 32.626 _cell.length_b 32.626 _cell.length_c 215.921 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYA _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Asparagine--tRNA ligase, cytoplasmic' 9046.690 2 6.1.1.22 ? 'UNP residues 4-77' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 135 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Asparaginyl-tRNA synthetase,AsnRS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)AELYVSDREGSDATGDGTKEKPFKTGLKAL(MSE)TVGKEPFPTIYVDSQKENERWNVISKSQLKNIKK (MSE)WHREQ(MSE)KS ; _entity_poly.pdbx_seq_one_letter_code_can GHMAELYVSDREGSDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQKENERWNVISKSQLKNIKKMWHREQMKS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 ALA n 1 5 GLU n 1 6 LEU n 1 7 TYR n 1 8 VAL n 1 9 SER n 1 10 ASP n 1 11 ARG n 1 12 GLU n 1 13 GLY n 1 14 SER n 1 15 ASP n 1 16 ALA n 1 17 THR n 1 18 GLY n 1 19 ASP n 1 20 GLY n 1 21 THR n 1 22 LYS n 1 23 GLU n 1 24 LYS n 1 25 PRO n 1 26 PHE n 1 27 LYS n 1 28 THR n 1 29 GLY n 1 30 LEU n 1 31 LYS n 1 32 ALA n 1 33 LEU n 1 34 MSE n 1 35 THR n 1 36 VAL n 1 37 GLY n 1 38 LYS n 1 39 GLU n 1 40 PRO n 1 41 PHE n 1 42 PRO n 1 43 THR n 1 44 ILE n 1 45 TYR n 1 46 VAL n 1 47 ASP n 1 48 SER n 1 49 GLN n 1 50 LYS n 1 51 GLU n 1 52 ASN n 1 53 GLU n 1 54 ARG n 1 55 TRP n 1 56 ASN n 1 57 VAL n 1 58 ILE n 1 59 SER n 1 60 LYS n 1 61 SER n 1 62 GLN n 1 63 LEU n 1 64 LYS n 1 65 ASN n 1 66 ILE n 1 67 LYS n 1 68 LYS n 1 69 MSE n 1 70 TRP n 1 71 HIS n 1 72 ARG n 1 73 GLU n 1 74 GLN n 1 75 MSE n 1 76 LYS n 1 77 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 77 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NARS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYNC_HUMAN _struct_ref.pdbx_db_accession O43776 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AELYVSDREGSDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQKENERWNVISKSQLKNIKKMWHREQMKS _struct_ref.pdbx_align_begin 4 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ZYA A 4 ? 77 ? O43776 4 ? 77 ? 4 77 2 1 4ZYA B 4 ? 77 ? O43776 4 ? 77 ? 4 77 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ZYA GLY A 1 ? UNP O43776 ? ? 'expression tag' 1 1 1 4ZYA HIS A 2 ? UNP O43776 ? ? 'expression tag' 2 2 1 4ZYA MSE A 3 ? UNP O43776 ? ? 'expression tag' 3 3 2 4ZYA GLY B 1 ? UNP O43776 ? ? 'expression tag' 1 4 2 4ZYA HIS B 2 ? UNP O43776 ? ? 'expression tag' 2 5 2 4ZYA MSE B 3 ? UNP O43776 ? ? 'expression tag' 3 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZYA _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.83 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 32.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'zinc sulfate, MES, PEG 550 MME' _exptl_crystal_grow.pdbx_pH_range 6.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-10-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PAL/PLS BEAMLINE 7A (6B, 6C1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline '7A (6B, 6C1)' _diffrn_source.pdbx_synchrotron_site PAL/PLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4ZYA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14574 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.107 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.68 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.497 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ZYA _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14574 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.61 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.016 _refine.ls_d_res_high 1.650 _refine.ls_percent_reflns_obs 93.71 _refine.ls_R_factor_obs 0.2105 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2063 _refine.ls_R_factor_R_free 0.2541 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.23 _refine.ls_number_reflns_R_free 762 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML . _refine.pdbx_overall_phase_error 29.18 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1168 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 1312 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 28.016 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1213 'X-RAY DIFFRACTION' ? f_angle_d 1.120 ? ? 1620 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.921 ? ? 477 'X-RAY DIFFRACTION' ? f_chiral_restr 0.043 ? ? 168 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 203 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.6551 1.7827 2670 0.3283 88.00 0.3272 . . 150 . . . . 'X-RAY DIFFRACTION' . 1.7827 1.9616 2684 0.3063 87.00 0.3141 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.9616 2.2443 2719 0.2606 89.00 0.3165 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.2443 2.8235 2766 0.2272 90.00 0.2319 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.8235 13.6676 2854 0.1545 92.00 0.2408 . . 145 . . . . # _struct.entry_id 4ZYA _struct.title 'The N-terminal extension domain of human asparaginyl-tRNA synthetase' _struct.pdbx_descriptor 'Asparagine--tRNA ligase, cytoplasmic (E.C.6.1.1.22)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZYA _struct_keywords.text 'asparaginyl-tRNA synthetase, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 28 ? THR A 35 ? THR A 28 THR A 35 1 ? 8 HELX_P HELX_P2 AA2 SER A 59 ? GLN A 74 ? SER A 59 GLN A 74 1 ? 16 HELX_P HELX_P3 AA3 THR B 28 ? VAL B 36 ? THR B 28 VAL B 36 1 ? 9 HELX_P HELX_P4 AA4 SER B 59 ? GLN B 74 ? SER B 59 GLN B 74 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MSE 3 C ? ? ? 1_555 A ALA 4 N ? ? A MSE 3 A ALA 4 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale both ? A LEU 33 C ? ? ? 1_555 A MSE 34 N A ? A LEU 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale both ? A LEU 33 C ? ? ? 1_555 A MSE 34 N B ? A LEU 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale both ? A MSE 34 C A ? ? 1_555 A THR 35 N ? ? A MSE 34 A THR 35 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? A MSE 34 C B ? ? 1_555 A THR 35 N ? ? A MSE 34 A THR 35 1_555 ? ? ? ? ? ? ? 1.325 ? metalc1 metalc ? ? A GLU 39 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 39 A ZN 101 1_555 ? ? ? ? ? ? ? 1.922 ? covale6 covale both ? A LYS 68 C ? ? ? 1_555 A MSE 69 N A ? A LYS 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.340 ? covale7 covale both ? A LYS 68 C ? ? ? 1_555 A MSE 69 N B ? A LYS 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.337 ? covale8 covale both ? A MSE 69 C A ? ? 1_555 A TRP 70 N ? ? A MSE 69 A TRP 70 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale both ? A MSE 69 C B ? ? 1_555 A TRP 70 N ? ? A MSE 69 A TRP 70 1_555 ? ? ? ? ? ? ? 1.331 ? metalc2 metalc ? ? A HIS 71 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 71 A ZN 101 1_555 ? ? ? ? ? ? ? 2.036 ? covale10 covale both ? A GLN 74 C ? ? ? 1_555 A MSE 75 N ? ? A GLN 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.325 ? covale11 covale both ? A MSE 75 C ? ? ? 1_555 A LYS 76 N ? ? A MSE 75 A LYS 76 1_555 ? ? ? ? ? ? ? 1.333 ? covale12 covale both ? B HIS 2 C ? ? ? 1_555 B MSE 3 N ? ? B HIS 2 B MSE 3 1_555 ? ? ? ? ? ? ? 1.330 ? covale13 covale both ? B MSE 3 C ? ? ? 1_555 B ALA 4 N ? ? B MSE 3 B ALA 4 1_555 ? ? ? ? ? ? ? 1.327 ? covale14 covale both ? B LEU 33 C ? ? ? 1_555 B MSE 34 N ? ? B LEU 33 B MSE 34 1_555 ? ? ? ? ? ? ? 1.330 ? covale15 covale both ? B MSE 34 C ? ? ? 1_555 B THR 35 N ? ? B MSE 34 B THR 35 1_555 ? ? ? ? ? ? ? 1.312 ? metalc3 metalc ? ? B GLU 39 OE2 ? ? ? 1_555 D ZN . ZN ? ? B GLU 39 B ZN 101 1_555 ? ? ? ? ? ? ? 1.921 ? covale16 covale both ? B LYS 68 C ? ? ? 1_555 B MSE 69 N ? ? B LYS 68 B MSE 69 1_555 ? ? ? ? ? ? ? 1.319 ? covale17 covale both ? B MSE 69 C ? ? ? 1_555 B TRP 70 N ? ? B MSE 69 B TRP 70 1_555 ? ? ? ? ? ? ? 1.328 ? metalc4 metalc ? ? B HIS 71 NE2 ? ? ? 1_555 D ZN . ZN ? ? B HIS 71 B ZN 101 1_555 ? ? ? ? ? ? ? 1.994 ? covale18 covale both ? B GLN 74 C ? ? ? 1_555 B MSE 75 N ? ? B GLN 74 B MSE 75 1_555 ? ? ? ? ? ? ? 1.330 ? covale19 covale both ? B MSE 75 C ? ? ? 1_555 B LYS 76 N ? ? B MSE 75 B LYS 76 1_555 ? ? ? ? ? ? ? 1.336 ? metalc5 metalc ? ? A GLU 23 OE1 ? ? ? 1_555 C ZN . ZN ? ? A GLU 23 A ZN 101 1_545 ? ? ? ? ? ? ? 1.976 ? metalc6 metalc ? ? B GLU 23 OE1 ? ? ? 1_555 D ZN . ZN ? ? B GLU 23 B ZN 101 1_445 ? ? ? ? ? ? ? 2.192 ? metalc7 metalc ? ? B GLU 23 OE2 ? ? ? 1_555 D ZN . ZN ? ? B GLU 23 B ZN 101 1_445 ? ? ? ? ? ? ? 2.440 ? metalc8 metalc ? ? C ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 101 A HOH 227 1_565 ? ? ? ? ? ? ? 2.262 ? metalc9 metalc ? ? D ZN . ZN ? ? ? 1_555 H HOH . O ? ? B ZN 101 B HOH 244 1_665 ? ? ? ? ? ? ? 2.623 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 39 A . ? GLU 39 A PRO 40 A ? PRO 40 A 1 -0.41 2 GLU 39 B . ? GLU 39 B PRO 40 B ? PRO 40 B 1 7.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 5 ? VAL A 8 ? GLU A 5 VAL A 8 AA1 2 THR A 43 ? VAL A 46 ? THR A 43 VAL A 46 AA1 3 ASN A 56 ? VAL A 57 ? ASN A 56 VAL A 57 AA2 1 GLU B 5 ? TYR B 7 ? GLU B 5 TYR B 7 AA2 2 THR B 43 ? ASP B 47 ? THR B 43 ASP B 47 AA2 3 TRP B 55 ? VAL B 57 ? TRP B 55 VAL B 57 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 6 ? N LEU A 6 O THR A 43 ? O THR A 43 AA1 2 3 N VAL A 46 ? N VAL A 46 O ASN A 56 ? O ASN A 56 AA2 1 2 N LEU B 6 ? N LEU B 6 O TYR B 45 ? O TYR B 45 AA2 2 3 N VAL B 46 ? N VAL B 46 O ASN B 56 ? O ASN B 56 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 101 ? 4 'binding site for residue ZN A 101' AC2 Software B ZN 101 ? 4 'binding site for residue ZN B 101' AC3 Software B GOL 102 ? 4 'binding site for residue GOL B 102' AC4 Software B CL 103 ? 4 'binding site for residue CL B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 23 ? GLU A 23 . ? 1_565 ? 2 AC1 4 GLU A 39 ? GLU A 39 . ? 1_555 ? 3 AC1 4 HIS A 71 ? HIS A 71 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 227 . ? 1_565 ? 5 AC2 4 GLU B 23 ? GLU B 23 . ? 1_665 ? 6 AC2 4 GLU B 39 ? GLU B 39 . ? 1_555 ? 7 AC2 4 HIS B 71 ? HIS B 71 . ? 1_555 ? 8 AC2 4 HOH H . ? HOH B 244 . ? 1_665 ? 9 AC3 4 LYS A 38 ? LYS A 38 . ? 5_455 ? 10 AC3 4 GLY B 37 ? GLY B 37 . ? 1_555 ? 11 AC3 4 GLU B 53 ? GLU B 53 . ? 1_565 ? 12 AC3 4 HOH H . ? HOH B 207 . ? 1_555 ? 13 AC4 4 LEU A 30 ? LEU A 30 . ? 1_555 ? 14 AC4 4 GLY B 29 ? GLY B 29 . ? 1_555 ? 15 AC4 4 LEU B 30 ? LEU B 30 . ? 1_555 ? 16 AC4 4 HOH H . ? HOH B 245 . ? 1_555 ? # _atom_sites.entry_id 4ZYA _atom_sites.fract_transf_matrix[1][1] 0.030650 _atom_sites.fract_transf_matrix[1][2] 0.017696 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035392 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004631 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 MSE 3 3 3 MSE MSE A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 MSE 34 34 34 MSE MSE A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLN 49 49 ? ? ? A . n A 1 50 LYS 50 50 ? ? ? A . n A 1 51 GLU 51 51 ? ? ? A . n A 1 52 ASN 52 52 ? ? ? A . n A 1 53 GLU 53 53 ? ? ? A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 TRP 55 55 55 TRP TRP A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 MSE 69 69 69 MSE MSE A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 MSE 75 75 75 MSE MSE A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 ? ? ? A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 HIS 2 2 2 HIS HIS B . n B 1 3 MSE 3 3 3 MSE MSE B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 TYR 7 7 7 TYR TYR B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 ASP 10 10 10 ASP ASP B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 THR 17 17 17 THR THR B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 GLU 23 23 23 GLU GLU B . n B 1 24 LYS 24 24 24 LYS LYS B . n B 1 25 PRO 25 25 25 PRO PRO B . n B 1 26 PHE 26 26 26 PHE PHE B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 THR 28 28 28 THR THR B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 ALA 32 32 32 ALA ALA B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 MSE 34 34 34 MSE MSE B . n B 1 35 THR 35 35 35 THR THR B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 GLU 39 39 39 GLU GLU B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 PHE 41 41 41 PHE PHE B . n B 1 42 PRO 42 42 42 PRO PRO B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 TYR 45 45 45 TYR TYR B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 SER 48 48 48 SER SER B . n B 1 49 GLN 49 49 49 GLN GLN B . n B 1 50 LYS 50 50 50 LYS LYS B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 ASN 52 52 52 ASN ASN B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 ARG 54 54 54 ARG ARG B . n B 1 55 TRP 55 55 55 TRP TRP B . n B 1 56 ASN 56 56 56 ASN ASN B . n B 1 57 VAL 57 57 57 VAL VAL B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 SER 59 59 59 SER SER B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 SER 61 61 61 SER SER B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 LYS 64 64 64 LYS LYS B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 MSE 69 69 69 MSE MSE B . n B 1 70 TRP 70 70 70 TRP TRP B . n B 1 71 HIS 71 71 71 HIS HIS B . n B 1 72 ARG 72 72 72 ARG ARG B . n B 1 73 GLU 73 73 73 GLU GLU B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 MSE 75 75 75 MSE MSE B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 SER 77 77 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 101 1002 ZN ZN A . D 2 ZN 1 101 1003 ZN ZN B . E 3 GOL 1 102 1501 GOL GOL B . F 4 CL 1 103 1 CL CL B . G 5 HOH 1 201 102 HOH HOH A . G 5 HOH 2 202 82 HOH HOH A . G 5 HOH 3 203 108 HOH HOH A . G 5 HOH 4 204 60 HOH HOH A . G 5 HOH 5 205 105 HOH HOH A . G 5 HOH 6 206 71 HOH HOH A . G 5 HOH 7 207 78 HOH HOH A . G 5 HOH 8 208 133 HOH HOH A . G 5 HOH 9 209 94 HOH HOH A . G 5 HOH 10 210 56 HOH HOH A . G 5 HOH 11 211 106 HOH HOH A . G 5 HOH 12 212 130 HOH HOH A . G 5 HOH 13 213 73 HOH HOH A . G 5 HOH 14 214 34 HOH HOH A . G 5 HOH 15 215 128 HOH HOH A . G 5 HOH 16 216 125 HOH HOH A . G 5 HOH 17 217 70 HOH HOH A . G 5 HOH 18 218 120 HOH HOH A . G 5 HOH 19 219 52 HOH HOH A . G 5 HOH 20 220 19 HOH HOH A . G 5 HOH 21 221 28 HOH HOH A . G 5 HOH 22 222 54 HOH HOH A . G 5 HOH 23 223 9 HOH HOH A . G 5 HOH 24 224 76 HOH HOH A . G 5 HOH 25 225 107 HOH HOH A . G 5 HOH 26 226 51 HOH HOH A . G 5 HOH 27 227 99 HOH HOH A . G 5 HOH 28 228 5 HOH HOH A . G 5 HOH 29 229 95 HOH HOH A . G 5 HOH 30 230 72 HOH HOH A . G 5 HOH 31 231 6 HOH HOH A . G 5 HOH 32 232 32 HOH HOH A . G 5 HOH 33 233 2 HOH HOH A . G 5 HOH 34 234 40 HOH HOH A . G 5 HOH 35 235 123 HOH HOH A . G 5 HOH 36 236 63 HOH HOH A . G 5 HOH 37 237 4 HOH HOH A . G 5 HOH 38 238 126 HOH HOH A . G 5 HOH 39 239 92 HOH HOH A . G 5 HOH 40 240 18 HOH HOH A . G 5 HOH 41 241 11 HOH HOH A . G 5 HOH 42 242 22 HOH HOH A . G 5 HOH 43 243 27 HOH HOH A . G 5 HOH 44 244 91 HOH HOH A . G 5 HOH 45 245 103 HOH HOH A . G 5 HOH 46 246 87 HOH HOH A . G 5 HOH 47 247 12 HOH HOH A . G 5 HOH 48 248 75 HOH HOH A . G 5 HOH 49 249 68 HOH HOH A . G 5 HOH 50 250 111 HOH HOH A . G 5 HOH 51 251 36 HOH HOH A . G 5 HOH 52 252 97 HOH HOH A . G 5 HOH 53 253 118 HOH HOH A . G 5 HOH 54 254 81 HOH HOH A . G 5 HOH 55 255 100 HOH HOH A . G 5 HOH 56 256 104 HOH HOH A . G 5 HOH 57 257 64 HOH HOH A . H 5 HOH 1 201 112 HOH HOH B . H 5 HOH 2 202 124 HOH HOH B . H 5 HOH 3 203 127 HOH HOH B . H 5 HOH 4 204 122 HOH HOH B . H 5 HOH 5 205 84 HOH HOH B . H 5 HOH 6 206 15 HOH HOH B . H 5 HOH 7 207 134 HOH HOH B . H 5 HOH 8 208 38 HOH HOH B . H 5 HOH 9 209 135 HOH HOH B . H 5 HOH 10 210 114 HOH HOH B . H 5 HOH 11 211 110 HOH HOH B . H 5 HOH 12 212 17 HOH HOH B . H 5 HOH 13 213 109 HOH HOH B . H 5 HOH 14 214 69 HOH HOH B . H 5 HOH 15 215 57 HOH HOH B . H 5 HOH 16 216 96 HOH HOH B . H 5 HOH 17 217 30 HOH HOH B . H 5 HOH 18 218 14 HOH HOH B . H 5 HOH 19 219 101 HOH HOH B . H 5 HOH 20 220 53 HOH HOH B . H 5 HOH 21 221 61 HOH HOH B . H 5 HOH 22 222 16 HOH HOH B . H 5 HOH 23 223 13 HOH HOH B . H 5 HOH 24 224 117 HOH HOH B . H 5 HOH 25 225 131 HOH HOH B . H 5 HOH 26 226 21 HOH HOH B . H 5 HOH 27 227 98 HOH HOH B . H 5 HOH 28 228 48 HOH HOH B . H 5 HOH 29 229 45 HOH HOH B . H 5 HOH 30 230 58 HOH HOH B . H 5 HOH 31 231 29 HOH HOH B . H 5 HOH 32 232 86 HOH HOH B . H 5 HOH 33 233 50 HOH HOH B . H 5 HOH 34 234 20 HOH HOH B . H 5 HOH 35 235 89 HOH HOH B . H 5 HOH 36 236 59 HOH HOH B . H 5 HOH 37 237 31 HOH HOH B . H 5 HOH 38 238 90 HOH HOH B . H 5 HOH 39 239 79 HOH HOH B . H 5 HOH 40 240 77 HOH HOH B . H 5 HOH 41 241 85 HOH HOH B . H 5 HOH 42 242 10 HOH HOH B . H 5 HOH 43 243 62 HOH HOH B . H 5 HOH 44 244 49 HOH HOH B . H 5 HOH 45 245 26 HOH HOH B . H 5 HOH 46 246 1 HOH HOH B . H 5 HOH 47 247 3 HOH HOH B . H 5 HOH 48 248 67 HOH HOH B . H 5 HOH 49 249 66 HOH HOH B . H 5 HOH 50 250 7 HOH HOH B . H 5 HOH 51 251 43 HOH HOH B . H 5 HOH 52 252 37 HOH HOH B . H 5 HOH 53 253 8 HOH HOH B . H 5 HOH 54 254 25 HOH HOH B . H 5 HOH 55 255 33 HOH HOH B . H 5 HOH 56 256 46 HOH HOH B . H 5 HOH 57 257 41 HOH HOH B . H 5 HOH 58 258 116 HOH HOH B . H 5 HOH 59 259 113 HOH HOH B . H 5 HOH 60 260 115 HOH HOH B . H 5 HOH 61 261 121 HOH HOH B . H 5 HOH 62 262 132 HOH HOH B . H 5 HOH 63 263 55 HOH HOH B . H 5 HOH 64 264 24 HOH HOH B . H 5 HOH 65 265 39 HOH HOH B . H 5 HOH 66 266 23 HOH HOH B . H 5 HOH 67 267 80 HOH HOH B . H 5 HOH 68 268 35 HOH HOH B . H 5 HOH 69 269 93 HOH HOH B . H 5 HOH 70 270 65 HOH HOH B . H 5 HOH 71 271 119 HOH HOH B . H 5 HOH 72 272 74 HOH HOH B . H 5 HOH 73 273 88 HOH HOH B . H 5 HOH 74 274 44 HOH HOH B . H 5 HOH 75 275 83 HOH HOH B . H 5 HOH 76 276 42 HOH HOH B . H 5 HOH 77 277 47 HOH HOH B . H 5 HOH 78 278 129 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 34 A MSE 34 ? MET 'modified residue' 2 A MSE 69 A MSE 69 ? MET 'modified residue' 3 A MSE 75 A MSE 75 ? MET 'modified residue' 4 B MSE 34 B MSE 34 ? MET 'modified residue' 5 B MSE 69 B MSE 69 ? MET 'modified residue' 6 B MSE 75 B MSE 75 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1990 ? 1 MORE -70 ? 1 'SSA (A^2)' 8870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 39 ? A GLU 39 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 NE2 ? A HIS 71 ? A HIS 71 ? 1_555 120.4 ? 2 OE2 ? A GLU 39 ? A GLU 39 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 23 ? A GLU 23 ? 1_555 39.5 ? 3 NE2 ? A HIS 71 ? A HIS 71 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 23 ? A GLU 23 ? 1_555 94.0 ? 4 OE2 ? A GLU 39 ? A GLU 39 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 O ? G HOH . ? A HOH 227 ? 1_565 125.4 ? 5 NE2 ? A HIS 71 ? A HIS 71 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 O ? G HOH . ? A HOH 227 ? 1_565 108.8 ? 6 OE1 ? A GLU 23 ? A GLU 23 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 O ? G HOH . ? A HOH 227 ? 1_565 120.6 ? 7 OE2 ? B GLU 39 ? B GLU 39 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 NE2 ? B HIS 71 ? B HIS 71 ? 1_555 106.0 ? 8 OE2 ? B GLU 39 ? B GLU 39 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 OE1 ? B GLU 23 ? B GLU 23 ? 1_555 36.9 ? 9 NE2 ? B HIS 71 ? B HIS 71 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 OE1 ? B GLU 23 ? B GLU 23 ? 1_555 80.0 ? 10 OE2 ? B GLU 39 ? B GLU 39 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 OE2 ? B GLU 23 ? B GLU 23 ? 1_555 36.0 ? 11 NE2 ? B HIS 71 ? B HIS 71 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 OE2 ? B GLU 23 ? B GLU 23 ? 1_555 78.2 ? 12 OE1 ? B GLU 23 ? B GLU 23 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 OE2 ? B GLU 23 ? B GLU 23 ? 1_555 3.8 ? 13 OE2 ? B GLU 39 ? B GLU 39 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 O ? H HOH . ? B HOH 244 ? 1_665 117.3 ? 14 NE2 ? B HIS 71 ? B HIS 71 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 O ? H HOH . ? B HOH 244 ? 1_665 110.7 ? 15 OE1 ? B GLU 23 ? B GLU 23 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 O ? H HOH . ? B HOH 244 ? 1_665 104.4 ? 16 OE2 ? B GLU 23 ? B GLU 23 ? 1_555 ZN ? D ZN . ? B ZN 101 ? 1_555 O ? H HOH . ? B HOH 244 ? 1_665 108.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-25 2 'Structure model' 1 1 2019-04-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG B SER 61 ? ? O B HOH 201 ? ? 1.86 2 1 O A ASP 15 ? ? O A HOH 201 ? ? 1.95 3 1 O A HOH 255 ? ? O A HOH 256 ? ? 2.01 4 1 O B HOH 258 ? ? O B HOH 260 ? ? 2.01 5 1 O B HOH 221 ? ? O B HOH 269 ? ? 2.02 6 1 O A HOH 202 ? ? O A HOH 216 ? ? 2.08 7 1 O A HOH 217 ? ? O A HOH 253 ? ? 2.14 8 1 O B HOH 235 ? ? O B HOH 244 ? ? 2.14 9 1 OG B SER 14 ? ? O B HOH 202 ? ? 2.14 10 1 OD1 B ASP 19 ? ? OG1 B THR 21 ? ? 2.15 11 1 OD1 B ASP 47 ? ? O B HOH 203 ? ? 2.17 12 1 NH2 B ARG 11 ? ? O B HOH 204 ? ? 2.18 13 1 OE1 B GLN 62 ? ? O B HOH 205 ? ? 2.18 14 1 O A SER 61 ? ? O A HOH 202 ? ? 2.18 15 1 O B GLU 23 ? ? O B HOH 206 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 221 ? ? 1_555 O A HOH 231 ? ? 1_545 2.10 2 1 O A HOH 248 ? ? 1_555 O A HOH 257 ? ? 1_565 2.11 3 1 O B HOH 218 ? ? 1_555 O B HOH 251 ? ? 1_665 2.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A GLN 49 ? A GLN 49 4 1 Y 1 A LYS 50 ? A LYS 50 5 1 Y 1 A GLU 51 ? A GLU 51 6 1 Y 1 A ASN 52 ? A ASN 52 7 1 Y 1 A GLU 53 ? A GLU 53 8 1 Y 1 A SER 77 ? A SER 77 9 1 Y 1 B SER 77 ? B SER 77 # _pdbx_audit_support.funding_organization 'Ministry of Science, ICT and Future Planning of Korea' _pdbx_audit_support.country 'Korea, Republic Of' _pdbx_audit_support.grant_number 2013M3A6A4043695 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 GLYCEROL GOL 4 'CHLORIDE ION' CL 5 water HOH #