data_4AR4 # _entry.id 4AR4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.369 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4AR4 pdb_00004ar4 10.2210/pdb4ar4/pdb PDBE EBI-52069 ? ? WWPDB D_1290052069 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1BQ8 unspecified 'RUBREDOXIN (METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS' PDB 1BQ9 unspecified 'RUBREDOXIN (FORMYL METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS' PDB 1BRF unspecified 'RUBREDOXIN (WILD TYPE) FROM PYROCOCCUS FURIOSUS' PDB 1CAA unspecified 'RUBREDOXIN (OXIDIZED)' PDB 1CAD unspecified 'RUBREDOXIN (REDUCED)' PDB 1IU5 unspecified 'X-RAY CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROMPYROCOCCUS FURIOSUS' PDB 1IU6 unspecified 'NEUTRON CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROMPYROCOCCUS FURIOSUS' PDB 1QCV unspecified 'RUBREDOXIN VARIANT (PFRD-XC4) FOLDS WITHOUT IRON' PDB 1RWD unspecified 'BACKBONE NMR STRUCTURE OF A MUTANT P. FURIOSUS RUBREDOXINUSING RESIDUAL DIPOLAR COUPLINGS' PDB 1VCX unspecified 'NEUTRON CRYSTAL STRUCTURE OF THE WILD TYPE RUBREDOXIN FROMPYROCOCCUS FURIOSUS AT 1.5A RESOLUTION' PDB 1ZRP unspecified 'RUBREDOXIN (ZN-SUBSTITUTED) (NMR, 40 STRUCTURES)' PDB 4AR3 unspecified 'NEAR-ATOMIC RESOLUTION NEUTRON CRYSTALLOGRAPHY ON THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN.' PDB 4AR5 unspecified ;X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN IN D2O AT 295K (IN QUARTZ CAPILLARY) TO 1.00 ANGSTROM RESOLUTION. ; PDB 4AR6 unspecified ;X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE REDUCED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN AT 295 K ( IN QUARTZ CAPILLARY) TO 0.92 ANGSTROMS RESOLUTION. ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AR4 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-04-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cuypers, M.G.' 1 ? 'Mason, S.A.' 2 ? 'Blakeley, M.P.' 3 ? 'Mitchell, E.P.' 4 ? 'Haertlein, M.' 5 ? 'Forsyth, V.T.' 6 ? # _citation.id primary _citation.title ;Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes. ; _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 52 _citation.page_first 1022 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 1521-3773 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23225503 _citation.pdbx_database_id_DOI 10.1002/ANIE.201207071 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cuypers, M.G.' 1 ? primary 'Mason, S.A.' 2 ? primary 'Blakeley, M.P.' 3 ? primary 'Mitchell, E.P.' 4 ? primary 'Haertlein, M.' 5 ? primary 'Forsyth, V.T.' 6 ? # _cell.entry_id 4AR4 _cell.length_a 34.375 _cell.length_b 35.183 _cell.length_c 43.994 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AR4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rubredoxin 6031.728 1 ? ? ? 'REDUCED STATE (FE II), HYDRONIUM IONS, CARBOXYLIC DEUTERONS' 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 non-polymer syn 'deuterium(1+)' 2.014 2 ? ? ? ? 4 non-polymer syn trideuteriooxidanium 22.042 4 ? ? ? ? 5 water nat water 18.015 104 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Rd # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_seq_one_letter_code_can MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 TRP n 1 5 VAL n 1 6 CYS n 1 7 LYS n 1 8 ILE n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 ILE n 1 13 TYR n 1 14 ASP n 1 15 GLU n 1 16 ASP n 1 17 ALA n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 ILE n 1 25 SER n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 LYS n 1 30 PHE n 1 31 GLU n 1 32 GLU n 1 33 LEU n 1 34 PRO n 1 35 ASP n 1 36 ASP n 1 37 TRP n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 ILE n 1 42 CYS n 1 43 GLY n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 SER n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 LYS n 1 52 LEU n 1 53 GLU n 1 54 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 54 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rub, PF1282' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 43587 / DSM 3638 / JCM 8422 / Vc1' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 186497 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector pET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_PYRFU _struct_ref.pdbx_db_accession P24297 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4AR4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 54 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P24297 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 54 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 53 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 D3O non-polymer . trideuteriooxidanium 'perdeuterated oxonium' 'D3 O 1' 22.042 D8U non-polymer . 'deuterium(1+)' ? 'D 1' 2.014 DOD non-polymer . 'DEUTERATED WATER' ? 'D2 O' 20.028 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4AR4 _exptl.method 'NEUTRON DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.46 _exptl_crystal.density_percent_sol 15.08 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 6.2' # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector '5ATM 3HE, CURVED 120X30 DEGREES' _diffrn_detector.type 'INSTITUT LAUE LANGEVIN DETECTOR GROUP' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'BORON CARBIDE BEAM DEFINING APERTURES' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator 'PYROLYTIC GRAPHITE (002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type neutron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 2.42 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'NUCLEAR REACTOR' _diffrn_source.type 'ILL BEAMLINE D19' _diffrn_source.pdbx_synchrotron_site ILL _diffrn_source.pdbx_synchrotron_beamline D19 _diffrn_source.pdbx_wavelength 2.42 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AR4 _reflns.observed_criterion_sigma_I 1.3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.42 _reflns.d_resolution_high 1.38 _reflns.number_obs 10521 _reflns.number_all ? _reflns.percent_possible_obs 93.1 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.B_iso_Wilson_estimate 11.4 _reflns.pdbx_redundancy 3.7 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all 0.084 _reflns.pdbx_CC_star ? # _refine.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine.entry_id 4AR4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10500 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.465 _refine.ls_d_res_high 1.381 _refine.ls_percent_reflns_obs 91.97 _refine.ls_R_factor_obs 0.1881 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1861 _refine.ls_R_factor_R_free 0.2264 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 505 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 11.52 _refine.aniso_B[1][1] -0.5527 _refine.aniso_B[2][2] 0.1200 _refine.aniso_B[3][3] 0.4326 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.600 _refine.solvent_model_param_bsol 40.158 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.60 _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE HIGH HYGROSCOPICITY OF SODIUM DITHIONITE ADDED TO THE CRYSTAL FOR FE REDUCTION LEADS TO THE INTRODUCTION OF EXCHANGEABLE H AND D ATOM POSITIONS DESPITE EFFORTS TO AVOID THE PRESENCE OF HYDROGEN ATOMS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.pdbx_overall_phase_error 22.14 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 421 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 530 _refine_hist.d_res_high 1.381 _refine_hist.d_res_low 27.465 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1120 'NEUTRON DIFFRACTION' ? f_angle_d 0.865 ? ? 1873 'NEUTRON DIFFRACTION' ? f_dihedral_angle_d 13.090 ? ? 257 'NEUTRON DIFFRACTION' ? f_chiral_restr 0.065 ? ? 64 'NEUTRON DIFFRACTION' ? f_plane_restr 0.006 ? ? 186 'NEUTRON DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'NEUTRON DIFFRACTION' . 1.3812 1.5202 2306 0.3596 87.00 0.4166 . . 123 . . . . 'NEUTRON DIFFRACTION' . 1.5202 1.7401 2486 0.2203 92.00 0.2568 . . 114 . . . . 'NEUTRON DIFFRACTION' . 1.7401 2.1922 2538 0.1485 94.00 0.2071 . . 139 . . . . 'NEUTRON DIFFRACTION' . 2.1922 27.4702 2665 0.1656 94.00 0.1935 . . 129 . . . . # _struct.entry_id 4AR4 _struct.title 'Neutron crystallographic structure of the reduced form perdeuterated Pyrococcus furiosus rubredoxin to 1.38 Angstrom resolution.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AR4 _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'ELECTRON TRANSPORT, PERDEUTERATED, MONOCHROMATIC NEUTRON CRYSTALLOGRAPHY, HYDRONIUM, PROTONATION STATE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? GLY A 23 ? PRO A 19 GLY A 22 5 ? 4 HELX_P HELX_P2 2 LYS A 29 ? LEU A 33 ? LYS A 28 LEU A 32 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 B FE . FE ? ? A CYS 5 A FE 1054 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 B FE . FE ? ? A CYS 8 A FE 1054 1_555 ? ? ? ? ? ? ? 2.452 ? ? metalc3 metalc ? ? A CYS 39 SG ? ? ? 1_555 B FE . FE ? ? A CYS 38 A FE 1054 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc4 metalc ? ? A CYS 42 SG ? ? ? 1_555 B FE . FE ? ? A CYS 41 A FE 1054 1_555 ? ? ? ? ? ? ? 2.251 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 12 ? ASP A 14 ? ILE A 11 ASP A 13 AA 2 LYS A 3 ? CYS A 6 ? LYS A 2 CYS A 5 AA 3 PHE A 49 ? LYS A 51 ? PHE A 48 LYS A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 13 ? N TYR A 12 O TRP A 4 ? O TRP A 3 AA 2 3 N VAL A 5 ? N VAL A 4 O GLU A 50 ? O GLU A 49 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FE 1054 ? 4 'BINDING SITE FOR RESIDUE FE A 1054' AC2 Software A D3O 1057 ? 3 'BINDING SITE FOR RESIDUE D3O A 1057' AC3 Software A D3O 1058 ? 2 'BINDING SITE FOR RESIDUE D3O A 1058' AC4 Software A D3O 1060 ? 2 'BINDING SITE FOR RESIDUE D3O A 1060' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 6 ? CYS A 5 . ? 1_555 ? 2 AC1 4 CYS A 9 ? CYS A 8 . ? 1_555 ? 3 AC1 4 CYS A 39 ? CYS A 38 . ? 1_555 ? 4 AC1 4 CYS A 42 ? CYS A 41 . ? 1_555 ? 5 AC2 3 ALA A 2 ? ALA A 1 . ? 1_555 ? 6 AC2 3 LYS A 3 ? LYS A 2 . ? 1_555 ? 7 AC2 3 LEU A 52 ? LEU A 51 . ? 1_555 ? 8 AC3 2 SER A 25 ? SER A 24 . ? 1_555 ? 9 AC3 2 PRO A 26 ? PRO A 25 . ? 1_555 ? 10 AC4 2 ALA A 17 ? ALA A 16 . ? 1_555 ? 11 AC4 2 DOD I . ? DOD A 2036 . ? 1_555 ? # _database_PDB_matrix.entry_id 4AR4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AR4 _atom_sites.fract_transf_matrix[1][1] 0.029091 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028423 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C D FE H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 ALA 2 1 1 ALA ALA A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 TRP 4 3 3 TRP TRP A . n A 1 5 VAL 5 4 4 VAL VAL A . n A 1 6 CYS 6 5 5 CYS CYS A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 CYS 9 8 8 CYS CYS A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 ASP 16 15 15 ASP ASP A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 TRP 37 36 36 TRP TRP A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 CYS 39 38 38 CYS CYS A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 CYS 42 41 41 CYS CYS A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 GLU 53 52 52 GLU GLU A . n A 1 54 ASP 54 53 53 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 1054 1054 FE FE A . C 3 D8U 1 1055 1055 D8U D8U A . D 3 D8U 1 1056 1056 D8U D8U A . E 4 D3O 1 1057 1057 D3O D3O A . F 4 D3O 1 1058 1058 D3O D3O A . G 4 D3O 1 1059 1059 D3O D3O A . H 4 D3O 1 1060 1060 D3O D3O A . I 5 DOD 1 2004 2004 DOD DOD A . I 5 DOD 2 2005 2005 DOD DOD A . I 5 DOD 3 2006 2006 DOD DOD A . I 5 DOD 4 2007 2007 DOD DOD A . I 5 DOD 5 2009 2009 DOD DOD A . I 5 DOD 6 2010 2010 DOD DOD A . I 5 DOD 7 2011 2011 DOD DOD A . I 5 DOD 8 2012 2012 DOD DOD A . I 5 DOD 9 2013 2013 DOD DOD A . I 5 DOD 10 2014 2014 DOD DOD A . I 5 DOD 11 2015 2015 DOD DOD A . I 5 DOD 12 2016 2016 DOD DOD A . I 5 DOD 13 2017 2017 DOD DOD A . I 5 DOD 14 2018 2018 DOD DOD A . I 5 DOD 15 2020 2020 DOD DOD A . I 5 DOD 16 2021 2021 DOD DOD A . I 5 DOD 17 2022 2022 DOD DOD A . I 5 DOD 18 2023 2023 DOD DOD A . I 5 DOD 19 2024 2024 DOD DOD A . I 5 DOD 20 2026 2026 DOD DOD A . I 5 DOD 21 2027 2027 DOD DOD A . I 5 DOD 22 2028 2028 DOD DOD A . I 5 DOD 23 2029 2029 DOD DOD A . I 5 DOD 24 2030 2030 DOD DOD A . I 5 DOD 25 2031 2031 DOD DOD A . I 5 DOD 26 2032 2032 DOD DOD A . I 5 DOD 27 2033 2033 DOD DOD A . I 5 DOD 28 2034 2034 DOD DOD A . I 5 DOD 29 2035 2035 DOD DOD A . I 5 DOD 30 2036 2036 DOD DOD A . I 5 DOD 31 2037 2037 DOD DOD A . I 5 DOD 32 2038 2038 DOD DOD A . I 5 DOD 33 2039 2039 DOD DOD A . I 5 DOD 34 2040 2040 DOD DOD A . I 5 DOD 35 2041 2041 DOD DOD A . I 5 DOD 36 2042 2042 DOD DOD A . I 5 DOD 37 2043 2043 DOD DOD A . I 5 DOD 38 2044 2044 DOD DOD A . I 5 DOD 39 2045 2045 DOD DOD A . I 5 DOD 40 2046 2046 DOD DOD A . I 5 DOD 41 2047 2047 DOD DOD A . I 5 DOD 42 2048 2048 DOD DOD A . I 5 DOD 43 2049 2049 DOD DOD A . I 5 DOD 44 2050 2050 DOD DOD A . I 5 DOD 45 2051 2051 DOD DOD A . I 5 DOD 46 2052 2052 DOD DOD A . I 5 DOD 47 2053 2053 DOD DOD A . I 5 DOD 48 2054 2054 DOD DOD A . I 5 DOD 49 2055 2055 DOD DOD A . I 5 DOD 50 2056 2056 DOD DOD A . I 5 DOD 51 2057 2057 DOD DOD A . I 5 DOD 52 2058 2058 DOD DOD A . I 5 DOD 53 2060 2060 DOD DOD A . I 5 DOD 54 2063 2063 DOD DOD A . I 5 DOD 55 2064 2064 DOD DOD A . I 5 DOD 56 2065 2065 DOD DOD A . I 5 DOD 57 2066 2066 DOD DOD A . I 5 DOD 58 2067 2067 DOD DOD A . I 5 DOD 59 2069 2069 DOD DOD A . I 5 DOD 60 2070 2070 DOD DOD A . I 5 DOD 61 2073 2073 DOD DOD A . I 5 DOD 62 2074 2074 DOD DOD A . I 5 DOD 63 2075 2075 DOD DOD A . I 5 DOD 64 2076 2076 DOD DOD A . I 5 DOD 65 2077 2077 DOD DOD A . I 5 DOD 66 2080 2080 DOD DOD A . I 5 DOD 67 2082 2082 DOD DOD A . I 5 DOD 68 2083 2083 DOD DOD A . I 5 DOD 69 2085 2085 DOD DOD A . I 5 DOD 70 2086 2086 DOD DOD A . I 5 DOD 71 2087 2087 DOD DOD A . I 5 DOD 72 2088 2088 DOD DOD A . I 5 DOD 73 2089 2089 DOD DOD A . I 5 DOD 74 2090 2090 DOD DOD A . I 5 DOD 75 2091 2091 DOD DOD A . I 5 DOD 76 2092 2092 DOD DOD A . I 5 DOD 77 2095 2095 DOD DOD A . I 5 DOD 78 2096 2096 DOD DOD A . I 5 DOD 79 2097 2097 DOD DOD A . I 5 DOD 80 2098 2098 DOD DOD A . I 5 DOD 81 2099 2099 DOD DOD A . I 5 DOD 82 2101 2101 DOD DOD A . I 5 DOD 83 2105 2105 DOD DOD A . I 5 DOD 84 2109 2109 DOD DOD A . I 5 DOD 85 2110 2110 DOD DOD A . I 5 DOD 86 2111 2111 DOD DOD A . I 5 DOD 87 2112 2112 DOD DOD A . I 5 DOD 88 2114 2114 DOD DOD A . I 5 DOD 89 2117 2117 DOD DOD A . I 5 DOD 90 2118 2118 DOD DOD A . I 5 DOD 91 2119 2119 DOD DOD A . I 5 DOD 92 2120 2120 DOD DOD A . I 5 DOD 93 2121 2121 DOD DOD A . I 5 DOD 94 2122 2122 DOD DOD A . I 5 DOD 95 2123 2123 DOD DOD A . I 5 DOD 96 2124 2124 DOD DOD A . I 5 DOD 97 2125 2125 DOD DOD A . I 5 DOD 98 2126 2126 DOD DOD A . I 5 DOD 99 2127 2127 DOD DOD A . I 5 DOD 100 2128 2128 DOD DOD A . I 5 DOD 101 2129 2129 DOD DOD A . I 5 DOD 102 2130 2130 DOD DOD A . I 5 DOD 103 2131 2131 DOD DOD A . I 5 DOD 104 2132 2132 DOD DOD A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9090 ? 1 MORE 40 ? 1 'SSA (A^2)' 6170 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 1054 ? 1_555 SG ? A CYS 9 ? A CYS 8 ? 1_555 112.8 ? 2 SG ? A CYS 6 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 1054 ? 1_555 SG ? A CYS 39 ? A CYS 38 ? 1_555 115.4 ? 3 SG ? A CYS 9 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 1054 ? 1_555 SG ? A CYS 39 ? A CYS 38 ? 1_555 102.0 ? 4 SG ? A CYS 6 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 1054 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 108.6 ? 5 SG ? A CYS 9 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 1054 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 108.4 ? 6 SG ? A CYS 39 ? A CYS 38 ? 1_555 FE ? B FE . ? A FE 1054 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 109.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-16 2 'Structure model' 1 1 2013-03-06 3 'Structure model' 1 2 2013-08-14 4 'Structure model' 1 3 2017-03-22 5 'Structure model' 1 4 2019-08-28 6 'Structure model' 2 0 2021-06-09 7 'Structure model' 2 1 2023-05-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Non-polymer description' 10 6 'Structure model' Other 11 6 'Structure model' 'Source and taxonomy' 12 6 'Structure model' 'Structure summary' 13 7 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' reflns 2 6 'Structure model' chem_comp 3 6 'Structure model' citation 4 6 'Structure model' entity 5 6 'Structure model' entity_name_com 6 6 'Structure model' entity_src_gen 7 6 'Structure model' pdbx_database_status 8 6 'Structure model' pdbx_struct_assembly_prop 9 6 'Structure model' pdbx_struct_conn_angle 10 6 'Structure model' struct_conn 11 6 'Structure model' struct_ref 12 6 'Structure model' struct_site 13 7 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_reflns.pdbx_Rrim_I_all' 2 5 'Structure model' '_reflns.pdbx_Rsym_value' 3 5 'Structure model' '_reflns.pdbx_netI_over_sigmaI' 4 6 'Structure model' '_chem_comp.formula' 5 6 'Structure model' '_citation.journal_id_ASTM' 6 6 'Structure model' '_citation.journal_id_CSD' 7 6 'Structure model' '_citation.journal_id_ISSN' 8 6 'Structure model' '_entity.pdbx_description' 9 6 'Structure model' '_entity_name_com.name' 10 6 'Structure model' '_entity_src_gen.gene_src_strain' 11 6 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 12 6 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 13 6 'Structure model' '_entity_src_gen.pdbx_gene_src_gene' 14 6 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 15 6 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 16 6 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 17 6 'Structure model' '_entity_src_gen.pdbx_host_org_vector' 18 6 'Structure model' '_entity_src_gen.pdbx_seq_type' 19 6 'Structure model' '_pdbx_database_status.status_code_sf' 20 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 21 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 22 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 6 'Structure model' '_pdbx_struct_conn_angle.value' 25 6 'Structure model' '_struct_conn.pdbx_dist_value' 26 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 6 'Structure model' '_struct_ref.pdbx_align_begin' 39 6 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 40 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 6 'Structure model' '_struct_site.pdbx_auth_seq_id' 43 7 'Structure model' '_database_2.pdbx_DOI' 44 7 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement . ? 1 ? ? ? ? RETREAT 'data reduction' . ? 2 ? ? ? ? RETREAT 'data scaling' . ? 3 ? ? ? ? # _pdbx_entry_details.entry_id 4AR4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'M IN POSITION 0' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 52 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 DOD _pdbx_validate_close_contact.auth_seq_id_2 2124 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 18 ? ? -154.96 66.51 2 1 ASP A 18 ? ? -154.96 65.82 3 1 GLU A 52 ? B -175.96 142.66 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A DOD 2034 ? 6.64 . 2 1 O ? A DOD 2085 ? 8.40 . 3 1 O ? A DOD 2088 ? 7.11 . 4 1 O ? A DOD 2091 ? 9.75 . 5 1 O ? A DOD 2096 ? 6.21 . 6 1 O ? A DOD 2097 ? 6.36 . 7 1 O A A DOD 2098 ? 11.81 . 8 1 O ? A DOD 2112 ? . 7.40 9 1 O ? A DOD 2120 ? 7.16 . 10 1 O ? A DOD 2131 ? 7.19 . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 'deuterium(1+)' D8U 4 trideuteriooxidanium D3O 5 water DOD #