data_4BF9 # _entry.id 4BF9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4BF9 PDBE EBI-56168 WWPDB D_1290056168 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4BFA _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF E. COLI DIHYDROURIDINE SYNTHASE C (DUSC)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BF9 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-03-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Byrne, R.T.' 1 'Whelan, F.' 2 'Konevega, A.' 3 'Aziz, N.' 4 'Rodnina, M.' 5 'Antson, A.A.' 6 # _citation.id primary _citation.title 'Major Reorientation of tRNA Substrates Defines Specificity of Dihydrouridine Synthases.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first 6033 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25902496 _citation.pdbx_database_id_DOI 10.1073/PNAS.1500161112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Byrne, R.T.' 1 primary 'Jenkins, H.T.' 2 primary 'Peters, D.T.' 3 primary 'Whelan, F.' 4 primary 'Stowell, J.' 5 primary 'Aziz, N.' 6 primary 'Kasatsky, P.' 7 primary 'Rodnina, M.V.' 8 primary 'Koonin, E.V.' 9 primary 'Konevega, A.L.' 10 primary 'Antson, A.A.' 11 # _cell.entry_id 4BF9 _cell.length_a 94.140 _cell.length_b 94.140 _cell.length_c 119.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BF9 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRNA-DIHYDROURIDINE SYNTHASE C' 38076.301 1 1.3.1.- ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 water nat water 18.015 104 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DIHYDROURIDINE SYNTHASE C' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGLVPRGSH(MSE)AS(MSE)RVLLAP(MSE)EGVLDSLVRELLTEVNDYDLCITEFVRVVDQLL PVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ GAKA(MSE)REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPV IANGEIWDWQSAQQC(MSE)AISGCDAV(MSE)IGRGALNIPNLSRVVKYNEPR(MSE)PWPEVVALLQKYTRLEKQGDT GLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMASMRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNAS RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVS VKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISG CDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL NNSPDIARAIQAIDIEKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MSE n 1 22 ALA n 1 23 SER n 1 24 MSE n 1 25 ARG n 1 26 VAL n 1 27 LEU n 1 28 LEU n 1 29 ALA n 1 30 PRO n 1 31 MSE n 1 32 GLU n 1 33 GLY n 1 34 VAL n 1 35 LEU n 1 36 ASP n 1 37 SER n 1 38 LEU n 1 39 VAL n 1 40 ARG n 1 41 GLU n 1 42 LEU n 1 43 LEU n 1 44 THR n 1 45 GLU n 1 46 VAL n 1 47 ASN n 1 48 ASP n 1 49 TYR n 1 50 ASP n 1 51 LEU n 1 52 CYS n 1 53 ILE n 1 54 THR n 1 55 GLU n 1 56 PHE n 1 57 VAL n 1 58 ARG n 1 59 VAL n 1 60 VAL n 1 61 ASP n 1 62 GLN n 1 63 LEU n 1 64 LEU n 1 65 PRO n 1 66 VAL n 1 67 LYS n 1 68 VAL n 1 69 PHE n 1 70 HIS n 1 71 ARG n 1 72 ILE n 1 73 CYS n 1 74 PRO n 1 75 GLU n 1 76 LEU n 1 77 GLN n 1 78 ASN n 1 79 ALA n 1 80 SER n 1 81 ARG n 1 82 THR n 1 83 PRO n 1 84 SER n 1 85 GLY n 1 86 THR n 1 87 LEU n 1 88 VAL n 1 89 ARG n 1 90 VAL n 1 91 GLN n 1 92 LEU n 1 93 LEU n 1 94 GLY n 1 95 GLN n 1 96 PHE n 1 97 PRO n 1 98 GLN n 1 99 TRP n 1 100 LEU n 1 101 ALA n 1 102 GLU n 1 103 ASN n 1 104 ALA n 1 105 ALA n 1 106 ARG n 1 107 ALA n 1 108 VAL n 1 109 GLU n 1 110 LEU n 1 111 GLY n 1 112 SER n 1 113 TRP n 1 114 GLY n 1 115 VAL n 1 116 ASP n 1 117 LEU n 1 118 ASN n 1 119 CYS n 1 120 GLY n 1 121 CYS n 1 122 PRO n 1 123 SER n 1 124 LYS n 1 125 THR n 1 126 VAL n 1 127 ASN n 1 128 GLY n 1 129 SER n 1 130 GLY n 1 131 GLY n 1 132 GLY n 1 133 ALA n 1 134 THR n 1 135 LEU n 1 136 LEU n 1 137 LYS n 1 138 ASP n 1 139 PRO n 1 140 GLU n 1 141 LEU n 1 142 ILE n 1 143 TYR n 1 144 GLN n 1 145 GLY n 1 146 ALA n 1 147 LYS n 1 148 ALA n 1 149 MSE n 1 150 ARG n 1 151 GLU n 1 152 ALA n 1 153 VAL n 1 154 PRO n 1 155 ALA n 1 156 HIS n 1 157 LEU n 1 158 PRO n 1 159 VAL n 1 160 SER n 1 161 VAL n 1 162 LYS n 1 163 VAL n 1 164 ARG n 1 165 LEU n 1 166 GLY n 1 167 TRP n 1 168 ASP n 1 169 SER n 1 170 GLY n 1 171 GLU n 1 172 LYS n 1 173 LYS n 1 174 PHE n 1 175 GLU n 1 176 ILE n 1 177 ALA n 1 178 ASP n 1 179 ALA n 1 180 VAL n 1 181 GLN n 1 182 GLN n 1 183 ALA n 1 184 GLY n 1 185 ALA n 1 186 THR n 1 187 GLU n 1 188 LEU n 1 189 VAL n 1 190 VAL n 1 191 HIS n 1 192 GLY n 1 193 ARG n 1 194 THR n 1 195 LYS n 1 196 GLU n 1 197 GLN n 1 198 GLY n 1 199 TYR n 1 200 ARG n 1 201 ALA n 1 202 GLU n 1 203 HIS n 1 204 ILE n 1 205 ASP n 1 206 TRP n 1 207 GLN n 1 208 ALA n 1 209 ILE n 1 210 GLY n 1 211 ASP n 1 212 ILE n 1 213 ARG n 1 214 GLN n 1 215 ARG n 1 216 LEU n 1 217 ASN n 1 218 ILE n 1 219 PRO n 1 220 VAL n 1 221 ILE n 1 222 ALA n 1 223 ASN n 1 224 GLY n 1 225 GLU n 1 226 ILE n 1 227 TRP n 1 228 ASP n 1 229 TRP n 1 230 GLN n 1 231 SER n 1 232 ALA n 1 233 GLN n 1 234 GLN n 1 235 CYS n 1 236 MSE n 1 237 ALA n 1 238 ILE n 1 239 SER n 1 240 GLY n 1 241 CYS n 1 242 ASP n 1 243 ALA n 1 244 VAL n 1 245 MSE n 1 246 ILE n 1 247 GLY n 1 248 ARG n 1 249 GLY n 1 250 ALA n 1 251 LEU n 1 252 ASN n 1 253 ILE n 1 254 PRO n 1 255 ASN n 1 256 LEU n 1 257 SER n 1 258 ARG n 1 259 VAL n 1 260 VAL n 1 261 LYS n 1 262 TYR n 1 263 ASN n 1 264 GLU n 1 265 PRO n 1 266 ARG n 1 267 MSE n 1 268 PRO n 1 269 TRP n 1 270 PRO n 1 271 GLU n 1 272 VAL n 1 273 VAL n 1 274 ALA n 1 275 LEU n 1 276 LEU n 1 277 GLN n 1 278 LYS n 1 279 TYR n 1 280 THR n 1 281 ARG n 1 282 LEU n 1 283 GLU n 1 284 LYS n 1 285 GLN n 1 286 GLY n 1 287 ASP n 1 288 THR n 1 289 GLY n 1 290 LEU n 1 291 TYR n 1 292 HIS n 1 293 VAL n 1 294 ALA n 1 295 ARG n 1 296 ILE n 1 297 LYS n 1 298 GLN n 1 299 TRP n 1 300 LEU n 1 301 SER n 1 302 TYR n 1 303 LEU n 1 304 ARG n 1 305 LYS n 1 306 GLU n 1 307 TYR n 1 308 ASP n 1 309 GLU n 1 310 ALA n 1 311 THR n 1 312 GLU n 1 313 LEU n 1 314 PHE n 1 315 GLN n 1 316 HIS n 1 317 VAL n 1 318 ARG n 1 319 VAL n 1 320 LEU n 1 321 ASN n 1 322 ASN n 1 323 SER n 1 324 PRO n 1 325 ASP n 1 326 ILE n 1 327 ALA n 1 328 ARG n 1 329 ALA n 1 330 ILE n 1 331 GLN n 1 332 ALA n 1 333 ILE n 1 334 ASP n 1 335 ILE n 1 336 GLU n 1 337 LYS n 1 338 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MG1655 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI K-12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700926 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'ROSETTA PLYSS' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DUSC_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P33371 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4BF9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 338 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P33371 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 315 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 315 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4BF9 MSE A 1 ? UNP P33371 ? ? 'expression tag' -22 1 1 4BF9 GLY A 2 ? UNP P33371 ? ? 'expression tag' -21 2 1 4BF9 SER A 3 ? UNP P33371 ? ? 'expression tag' -20 3 1 4BF9 SER A 4 ? UNP P33371 ? ? 'expression tag' -19 4 1 4BF9 HIS A 5 ? UNP P33371 ? ? 'expression tag' -18 5 1 4BF9 HIS A 6 ? UNP P33371 ? ? 'expression tag' -17 6 1 4BF9 HIS A 7 ? UNP P33371 ? ? 'expression tag' -16 7 1 4BF9 HIS A 8 ? UNP P33371 ? ? 'expression tag' -15 8 1 4BF9 HIS A 9 ? UNP P33371 ? ? 'expression tag' -14 9 1 4BF9 HIS A 10 ? UNP P33371 ? ? 'expression tag' -13 10 1 4BF9 SER A 11 ? UNP P33371 ? ? 'expression tag' -12 11 1 4BF9 SER A 12 ? UNP P33371 ? ? 'expression tag' -11 12 1 4BF9 GLY A 13 ? UNP P33371 ? ? 'expression tag' -10 13 1 4BF9 LEU A 14 ? UNP P33371 ? ? 'expression tag' -9 14 1 4BF9 VAL A 15 ? UNP P33371 ? ? 'expression tag' -8 15 1 4BF9 PRO A 16 ? UNP P33371 ? ? 'expression tag' -7 16 1 4BF9 ARG A 17 ? UNP P33371 ? ? 'expression tag' -6 17 1 4BF9 GLY A 18 ? UNP P33371 ? ? 'expression tag' -5 18 1 4BF9 SER A 19 ? UNP P33371 ? ? 'expression tag' -4 19 1 4BF9 HIS A 20 ? UNP P33371 ? ? 'expression tag' -3 20 1 4BF9 MSE A 21 ? UNP P33371 ? ? 'expression tag' -2 21 1 4BF9 ALA A 22 ? UNP P33371 ? ? 'expression tag' -1 22 1 4BF9 SER A 23 ? UNP P33371 ? ? 'expression tag' 0 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4BF9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.8 _exptl_crystal.density_percent_sol 68 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'MOLECULAR DIMENSIONS MORPHEUS SCREEN CONDITION D3, pH 6.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-05-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9808 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength 0.9808 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4BF9 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 59.80 _reflns.d_resolution_high 2.60 _reflns.number_obs 17124 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.843 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 7.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4BF9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16226 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.17 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.64 _refine.ls_R_factor_obs 0.17858 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17668 _refine.ls_R_factor_R_free 0.21447 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 860 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 53.164 _refine.aniso_B[1][1] 0.91 _refine.aniso_B[2][2] 0.91 _refine.aniso_B[3][3] -1.82 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.318 _refine.pdbx_overall_ESU_R_Free 0.229 _refine.overall_SU_ML 0.160 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.027 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2495 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 2630 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 58.17 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.019 ? 2577 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2500 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.431 1.983 ? 3505 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.777 3.000 ? 5730 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.274 5.000 ? 317 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.194 24.103 ? 117 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.521 15.000 ? 421 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.832 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.071 0.200 ? 391 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 3013 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 580 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.456 2.957 ? 1271 'X-RAY DIFFRACTION' ? r_mcbond_other 1.456 2.956 ? 1270 'X-RAY DIFFRACTION' ? r_mcangle_it 2.308 4.431 ? 1587 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.883 3.160 ? 1306 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.067 4.658 ? 1919 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.600 _refine_ls_shell.d_res_low 2.667 _refine_ls_shell.number_reflns_R_work 1175 _refine_ls_shell.R_factor_R_work 0.280 _refine_ls_shell.percent_reflns_obs 99.92 _refine_ls_shell.R_factor_R_free 0.277 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4BF9 _struct.title 'Crystal structure of E. coli dihydrouridine synthase C (DusC) (selenomethionine derivative)' _struct.pdbx_descriptor 'TRNA-DIHYDROURIDINE SYNTHASE C (E.C.1.3.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'P ATOMS ONLY, CHAIN B' # _struct_keywords.entry_id 4BF9 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'TRNA MODIFICATION, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 36 ? VAL A 46 ? ASP A 13 VAL A 23 1 ? 11 HELX_P HELX_P2 2 PRO A 65 ? CYS A 73 ? PRO A 42 CYS A 50 1 ? 9 HELX_P HELX_P3 3 PRO A 74 ? ALA A 79 ? PRO A 51 ALA A 56 5 ? 6 HELX_P HELX_P4 4 PHE A 96 ? LEU A 110 ? PHE A 73 LEU A 87 1 ? 15 HELX_P HELX_P5 5 GLY A 131 ? LYS A 137 ? GLY A 108 LYS A 114 5 ? 7 HELX_P HELX_P6 6 ASP A 138 ? VAL A 153 ? ASP A 115 VAL A 130 1 ? 16 HELX_P HELX_P7 7 LYS A 172 ? ALA A 183 ? LYS A 149 ALA A 160 1 ? 12 HELX_P HELX_P8 8 ARG A 200 ? ILE A 204 ? ARG A 177 ILE A 181 5 ? 5 HELX_P HELX_P9 9 ASP A 205 ? LEU A 216 ? ASP A 182 LEU A 193 1 ? 12 HELX_P HELX_P10 10 ASP A 228 ? GLY A 240 ? ASP A 205 GLY A 217 1 ? 13 HELX_P HELX_P11 11 ARG A 248 ? ILE A 253 ? ARG A 225 ILE A 230 1 ? 6 HELX_P HELX_P12 12 ASN A 255 ? ASN A 263 ? ASN A 232 ASN A 240 1 ? 9 HELX_P HELX_P13 13 PRO A 268 ? GLY A 286 ? PRO A 245 GLY A 263 1 ? 19 HELX_P HELX_P14 14 VAL A 293 ? ARG A 304 ? VAL A 270 ARG A 281 1 ? 12 HELX_P HELX_P15 15 ASP A 308 ? VAL A 319 ? ASP A 285 VAL A 296 1 ? 12 HELX_P HELX_P16 16 ASN A 322 ? ALA A 332 ? ASN A 299 ALA A 309 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 21 C ? ? ? 1_555 A ALA 22 N ? ? A MSE -2 A ALA -1 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale ? ? A MSE 24 N ? ? ? 1_555 A SER 23 C ? ? A MSE 1 A SER 0 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A MSE 24 C ? ? ? 1_555 A ARG 25 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.317 ? covale4 covale ? ? A MSE 31 N ? ? ? 1_555 A PRO 30 C ? ? A MSE 8 A PRO 7 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A MSE 31 C ? ? ? 1_555 A GLU 32 N ? ? A MSE 8 A GLU 9 1_555 ? ? ? ? ? ? ? 1.322 ? covale6 covale ? ? A MSE 149 N ? ? ? 1_555 A ALA 148 C ? ? A MSE 126 A ALA 125 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale ? ? A MSE 149 C ? ? ? 1_555 A ARG 150 N ? ? A MSE 126 A ARG 127 1_555 ? ? ? ? ? ? ? 1.338 ? covale8 covale ? ? A MSE 236 C ? ? ? 1_555 A ALA 237 N ? ? A MSE 213 A ALA 214 1_555 ? ? ? ? ? ? ? 1.326 ? covale9 covale ? ? A MSE 236 N ? ? ? 1_555 A CYS 235 C ? ? A MSE 213 A CYS 212 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale ? ? A MSE 245 C ? ? ? 1_555 A ILE 246 N ? ? A MSE 222 A ILE 223 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? A MSE 245 N ? ? ? 1_555 A VAL 244 C ? ? A MSE 222 A VAL 221 1_555 ? ? ? ? ? ? ? 1.328 ? covale12 covale ? ? A MSE 267 C ? ? ? 1_555 A PRO 268 N ? ? A MSE 244 A PRO 245 1_555 ? ? ? ? ? ? ? 1.341 ? covale13 covale ? ? A MSE 267 N ? ? ? 1_555 A ARG 266 C ? ? A MSE 244 A ARG 243 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? parallel AA 7 8 ? parallel AA 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 25 ? LEU A 28 ? ARG A 2 LEU A 5 AA 2 ALA A 243 ? ILE A 246 ? ALA A 220 ILE A 223 AA 3 VAL A 220 ? ASN A 223 ? VAL A 197 ASN A 200 AA 4 GLU A 187 ? HIS A 191 ? GLU A 164 HIS A 168 AA 5 VAL A 159 ? ARG A 164 ? VAL A 136 ARG A 141 AA 6 VAL A 115 ? CYS A 119 ? VAL A 92 CYS A 96 AA 7 VAL A 88 ? LEU A 93 ? VAL A 65 LEU A 70 AA 8 LEU A 51 ? ARG A 58 ? LEU A 28 ARG A 35 AA 9 ARG A 25 ? LEU A 28 ? ARG A 2 LEU A 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 27 ? N LEU A 4 O VAL A 244 ? O VAL A 221 AA 2 3 N MSE A 245 ? N MSE A 222 O ALA A 222 ? O ALA A 199 AA 3 4 N ILE A 221 ? N ILE A 198 O LEU A 188 ? O LEU A 165 AA 4 5 N VAL A 189 ? N VAL A 166 O VAL A 161 ? O VAL A 138 AA 5 6 N SER A 160 ? N SER A 137 O VAL A 115 ? O VAL A 92 AA 6 7 N ASP A 116 ? N ASP A 93 O VAL A 90 ? O VAL A 67 AA 7 8 N ARG A 89 ? N ARG A 66 O CYS A 52 ? O CYS A 29 AA 8 9 N ILE A 53 ? N ILE A 30 O LEU A 28 ? O LEU A 5 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'BINDING SITE FOR RESIDUE FMN A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 ALA A 29 ? ALA A 6 . ? 1_555 ? 2 AC1 18 PRO A 30 ? PRO A 7 . ? 1_555 ? 3 AC1 18 MSE A 31 ? MSE A 8 . ? 1_555 ? 4 AC1 18 GLU A 32 ? GLU A 9 . ? 1_555 ? 5 AC1 18 PHE A 56 ? PHE A 33 . ? 1_555 ? 6 AC1 18 GLN A 91 ? GLN A 68 . ? 1_555 ? 7 AC1 18 ASN A 118 ? ASN A 95 . ? 1_555 ? 8 AC1 18 CYS A 121 ? CYS A 98 . ? 1_555 ? 9 AC1 18 LYS A 162 ? LYS A 139 . ? 1_555 ? 10 AC1 18 HIS A 191 ? HIS A 168 . ? 1_555 ? 11 AC1 18 TYR A 199 ? TYR A 176 . ? 1_555 ? 12 AC1 18 ASN A 223 ? ASN A 200 . ? 1_555 ? 13 AC1 18 GLY A 224 ? GLY A 201 . ? 1_555 ? 14 AC1 18 GLU A 225 ? GLU A 202 . ? 1_555 ? 15 AC1 18 GLY A 247 ? GLY A 224 . ? 1_555 ? 16 AC1 18 ARG A 248 ? ARG A 225 . ? 1_555 ? 17 AC1 18 HOH C . ? HOH A 2080 . ? 1_555 ? 18 AC1 18 HOH C . ? HOH A 2082 . ? 1_555 ? # _database_PDB_matrix.entry_id 4BF9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BF9 _atom_sites.fract_transf_matrix[1][1] 0.010622 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010622 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008356 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -22 ? ? ? A . n A 1 2 GLY 2 -21 ? ? ? A . n A 1 3 SER 3 -20 ? ? ? A . n A 1 4 SER 4 -19 ? ? ? A . n A 1 5 HIS 5 -18 ? ? ? A . n A 1 6 HIS 6 -17 ? ? ? A . n A 1 7 HIS 7 -16 ? ? ? A . n A 1 8 HIS 8 -15 ? ? ? A . n A 1 9 HIS 9 -14 ? ? ? A . n A 1 10 HIS 10 -13 ? ? ? A . n A 1 11 SER 11 -12 ? ? ? A . n A 1 12 SER 12 -11 ? ? ? A . n A 1 13 GLY 13 -10 ? ? ? A . n A 1 14 LEU 14 -9 ? ? ? A . n A 1 15 VAL 15 -8 ? ? ? A . n A 1 16 PRO 16 -7 ? ? ? A . n A 1 17 ARG 17 -6 ? ? ? A . n A 1 18 GLY 18 -5 ? ? ? A . n A 1 19 SER 19 -4 ? ? ? A . n A 1 20 HIS 20 -3 ? ? ? A . n A 1 21 MSE 21 -2 -2 MSE MSE A . n A 1 22 ALA 22 -1 -1 ALA ALA A . n A 1 23 SER 23 0 0 SER SER A . n A 1 24 MSE 24 1 1 MSE MSE A . n A 1 25 ARG 25 2 2 ARG ARG A . n A 1 26 VAL 26 3 3 VAL VAL A . n A 1 27 LEU 27 4 4 LEU LEU A . n A 1 28 LEU 28 5 5 LEU LEU A . n A 1 29 ALA 29 6 6 ALA ALA A . n A 1 30 PRO 30 7 7 PRO PRO A . n A 1 31 MSE 31 8 8 MSE MSE A . n A 1 32 GLU 32 9 9 GLU GLU A . n A 1 33 GLY 33 10 10 GLY GLY A . n A 1 34 VAL 34 11 11 VAL VAL A . n A 1 35 LEU 35 12 12 LEU LEU A . n A 1 36 ASP 36 13 13 ASP ASP A . n A 1 37 SER 37 14 14 SER SER A . n A 1 38 LEU 38 15 15 LEU LEU A . n A 1 39 VAL 39 16 16 VAL VAL A . n A 1 40 ARG 40 17 17 ARG ARG A . n A 1 41 GLU 41 18 18 GLU GLU A . n A 1 42 LEU 42 19 19 LEU LEU A . n A 1 43 LEU 43 20 20 LEU LEU A . n A 1 44 THR 44 21 21 THR THR A . n A 1 45 GLU 45 22 22 GLU GLU A . n A 1 46 VAL 46 23 23 VAL VAL A . n A 1 47 ASN 47 24 24 ASN ASN A . n A 1 48 ASP 48 25 25 ASP ASP A . n A 1 49 TYR 49 26 26 TYR TYR A . n A 1 50 ASP 50 27 27 ASP ASP A . n A 1 51 LEU 51 28 28 LEU LEU A . n A 1 52 CYS 52 29 29 CYS CYS A . n A 1 53 ILE 53 30 30 ILE ILE A . n A 1 54 THR 54 31 31 THR THR A . n A 1 55 GLU 55 32 32 GLU GLU A . n A 1 56 PHE 56 33 33 PHE PHE A . n A 1 57 VAL 57 34 34 VAL VAL A . n A 1 58 ARG 58 35 35 ARG ARG A . n A 1 59 VAL 59 36 36 VAL VAL A . n A 1 60 VAL 60 37 37 VAL VAL A . n A 1 61 ASP 61 38 38 ASP ASP A . n A 1 62 GLN 62 39 39 GLN GLN A . n A 1 63 LEU 63 40 40 LEU LEU A . n A 1 64 LEU 64 41 41 LEU LEU A . n A 1 65 PRO 65 42 42 PRO PRO A . n A 1 66 VAL 66 43 43 VAL VAL A . n A 1 67 LYS 67 44 44 LYS LYS A . n A 1 68 VAL 68 45 45 VAL VAL A . n A 1 69 PHE 69 46 46 PHE PHE A . n A 1 70 HIS 70 47 47 HIS HIS A . n A 1 71 ARG 71 48 48 ARG ARG A . n A 1 72 ILE 72 49 49 ILE ILE A . n A 1 73 CYS 73 50 50 CYS CYS A . n A 1 74 PRO 74 51 51 PRO PRO A . n A 1 75 GLU 75 52 52 GLU GLU A . n A 1 76 LEU 76 53 53 LEU LEU A . n A 1 77 GLN 77 54 54 GLN GLN A . n A 1 78 ASN 78 55 55 ASN ASN A . n A 1 79 ALA 79 56 56 ALA ALA A . n A 1 80 SER 80 57 57 SER SER A . n A 1 81 ARG 81 58 58 ARG ARG A . n A 1 82 THR 82 59 59 THR THR A . n A 1 83 PRO 83 60 60 PRO PRO A . n A 1 84 SER 84 61 61 SER SER A . n A 1 85 GLY 85 62 62 GLY GLY A . n A 1 86 THR 86 63 63 THR THR A . n A 1 87 LEU 87 64 64 LEU LEU A . n A 1 88 VAL 88 65 65 VAL VAL A . n A 1 89 ARG 89 66 66 ARG ARG A . n A 1 90 VAL 90 67 67 VAL VAL A . n A 1 91 GLN 91 68 68 GLN GLN A . n A 1 92 LEU 92 69 69 LEU LEU A . n A 1 93 LEU 93 70 70 LEU LEU A . n A 1 94 GLY 94 71 71 GLY GLY A . n A 1 95 GLN 95 72 72 GLN GLN A . n A 1 96 PHE 96 73 73 PHE PHE A . n A 1 97 PRO 97 74 74 PRO PRO A . n A 1 98 GLN 98 75 75 GLN GLN A . n A 1 99 TRP 99 76 76 TRP TRP A . n A 1 100 LEU 100 77 77 LEU LEU A . n A 1 101 ALA 101 78 78 ALA ALA A . n A 1 102 GLU 102 79 79 GLU GLU A . n A 1 103 ASN 103 80 80 ASN ASN A . n A 1 104 ALA 104 81 81 ALA ALA A . n A 1 105 ALA 105 82 82 ALA ALA A . n A 1 106 ARG 106 83 83 ARG ARG A . n A 1 107 ALA 107 84 84 ALA ALA A . n A 1 108 VAL 108 85 85 VAL VAL A . n A 1 109 GLU 109 86 86 GLU GLU A . n A 1 110 LEU 110 87 87 LEU LEU A . n A 1 111 GLY 111 88 88 GLY GLY A . n A 1 112 SER 112 89 89 SER SER A . n A 1 113 TRP 113 90 90 TRP TRP A . n A 1 114 GLY 114 91 91 GLY GLY A . n A 1 115 VAL 115 92 92 VAL VAL A . n A 1 116 ASP 116 93 93 ASP ASP A . n A 1 117 LEU 117 94 94 LEU LEU A . n A 1 118 ASN 118 95 95 ASN ASN A . n A 1 119 CYS 119 96 96 CYS CYS A . n A 1 120 GLY 120 97 97 GLY GLY A . n A 1 121 CYS 121 98 98 CYS CYS A . n A 1 122 PRO 122 99 99 PRO PRO A . n A 1 123 SER 123 100 100 SER SER A . n A 1 124 LYS 124 101 101 LYS LYS A . n A 1 125 THR 125 102 102 THR THR A . n A 1 126 VAL 126 103 103 VAL VAL A . n A 1 127 ASN 127 104 104 ASN ASN A . n A 1 128 GLY 128 105 105 GLY GLY A . n A 1 129 SER 129 106 106 SER SER A . n A 1 130 GLY 130 107 107 GLY GLY A . n A 1 131 GLY 131 108 108 GLY GLY A . n A 1 132 GLY 132 109 109 GLY GLY A . n A 1 133 ALA 133 110 110 ALA ALA A . n A 1 134 THR 134 111 111 THR THR A . n A 1 135 LEU 135 112 112 LEU LEU A . n A 1 136 LEU 136 113 113 LEU LEU A . n A 1 137 LYS 137 114 114 LYS LYS A . n A 1 138 ASP 138 115 115 ASP ASP A . n A 1 139 PRO 139 116 116 PRO PRO A . n A 1 140 GLU 140 117 117 GLU GLU A . n A 1 141 LEU 141 118 118 LEU LEU A . n A 1 142 ILE 142 119 119 ILE ILE A . n A 1 143 TYR 143 120 120 TYR TYR A . n A 1 144 GLN 144 121 121 GLN GLN A . n A 1 145 GLY 145 122 122 GLY GLY A . n A 1 146 ALA 146 123 123 ALA ALA A . n A 1 147 LYS 147 124 124 LYS LYS A . n A 1 148 ALA 148 125 125 ALA ALA A . n A 1 149 MSE 149 126 126 MSE MSE A . n A 1 150 ARG 150 127 127 ARG ARG A . n A 1 151 GLU 151 128 128 GLU GLU A . n A 1 152 ALA 152 129 129 ALA ALA A . n A 1 153 VAL 153 130 130 VAL VAL A . n A 1 154 PRO 154 131 131 PRO PRO A . n A 1 155 ALA 155 132 132 ALA ALA A . n A 1 156 HIS 156 133 133 HIS HIS A . n A 1 157 LEU 157 134 134 LEU LEU A . n A 1 158 PRO 158 135 135 PRO PRO A . n A 1 159 VAL 159 136 136 VAL VAL A . n A 1 160 SER 160 137 137 SER SER A . n A 1 161 VAL 161 138 138 VAL VAL A . n A 1 162 LYS 162 139 139 LYS LYS A . n A 1 163 VAL 163 140 140 VAL VAL A . n A 1 164 ARG 164 141 141 ARG ARG A . n A 1 165 LEU 165 142 142 LEU LEU A . n A 1 166 GLY 166 143 143 GLY GLY A . n A 1 167 TRP 167 144 144 TRP TRP A . n A 1 168 ASP 168 145 145 ASP ASP A . n A 1 169 SER 169 146 146 SER SER A . n A 1 170 GLY 170 147 147 GLY GLY A . n A 1 171 GLU 171 148 148 GLU GLU A . n A 1 172 LYS 172 149 149 LYS LYS A . n A 1 173 LYS 173 150 150 LYS LYS A . n A 1 174 PHE 174 151 151 PHE PHE A . n A 1 175 GLU 175 152 152 GLU GLU A . n A 1 176 ILE 176 153 153 ILE ILE A . n A 1 177 ALA 177 154 154 ALA ALA A . n A 1 178 ASP 178 155 155 ASP ASP A . n A 1 179 ALA 179 156 156 ALA ALA A . n A 1 180 VAL 180 157 157 VAL VAL A . n A 1 181 GLN 181 158 158 GLN GLN A . n A 1 182 GLN 182 159 159 GLN GLN A . n A 1 183 ALA 183 160 160 ALA ALA A . n A 1 184 GLY 184 161 161 GLY GLY A . n A 1 185 ALA 185 162 162 ALA ALA A . n A 1 186 THR 186 163 163 THR THR A . n A 1 187 GLU 187 164 164 GLU GLU A . n A 1 188 LEU 188 165 165 LEU LEU A . n A 1 189 VAL 189 166 166 VAL VAL A . n A 1 190 VAL 190 167 167 VAL VAL A . n A 1 191 HIS 191 168 168 HIS HIS A . n A 1 192 GLY 192 169 169 GLY GLY A . n A 1 193 ARG 193 170 170 ARG ARG A . n A 1 194 THR 194 171 171 THR THR A . n A 1 195 LYS 195 172 172 LYS LYS A . n A 1 196 GLU 196 173 173 GLU GLU A . n A 1 197 GLN 197 174 174 GLN GLN A . n A 1 198 GLY 198 175 175 GLY GLY A . n A 1 199 TYR 199 176 176 TYR TYR A . n A 1 200 ARG 200 177 177 ARG ARG A . n A 1 201 ALA 201 178 178 ALA ALA A . n A 1 202 GLU 202 179 179 GLU GLU A . n A 1 203 HIS 203 180 180 HIS HIS A . n A 1 204 ILE 204 181 181 ILE ILE A . n A 1 205 ASP 205 182 182 ASP ASP A . n A 1 206 TRP 206 183 183 TRP TRP A . n A 1 207 GLN 207 184 184 GLN GLN A . n A 1 208 ALA 208 185 185 ALA ALA A . n A 1 209 ILE 209 186 186 ILE ILE A . n A 1 210 GLY 210 187 187 GLY GLY A . n A 1 211 ASP 211 188 188 ASP ASP A . n A 1 212 ILE 212 189 189 ILE ILE A . n A 1 213 ARG 213 190 190 ARG ARG A . n A 1 214 GLN 214 191 191 GLN GLN A . n A 1 215 ARG 215 192 192 ARG ARG A . n A 1 216 LEU 216 193 193 LEU LEU A . n A 1 217 ASN 217 194 194 ASN ASN A . n A 1 218 ILE 218 195 195 ILE ILE A . n A 1 219 PRO 219 196 196 PRO PRO A . n A 1 220 VAL 220 197 197 VAL VAL A . n A 1 221 ILE 221 198 198 ILE ILE A . n A 1 222 ALA 222 199 199 ALA ALA A . n A 1 223 ASN 223 200 200 ASN ASN A . n A 1 224 GLY 224 201 201 GLY GLY A . n A 1 225 GLU 225 202 202 GLU GLU A . n A 1 226 ILE 226 203 203 ILE ILE A . n A 1 227 TRP 227 204 204 TRP TRP A . n A 1 228 ASP 228 205 205 ASP ASP A . n A 1 229 TRP 229 206 206 TRP TRP A . n A 1 230 GLN 230 207 207 GLN GLN A . n A 1 231 SER 231 208 208 SER SER A . n A 1 232 ALA 232 209 209 ALA ALA A . n A 1 233 GLN 233 210 210 GLN GLN A . n A 1 234 GLN 234 211 211 GLN GLN A . n A 1 235 CYS 235 212 212 CYS CYS A . n A 1 236 MSE 236 213 213 MSE MSE A . n A 1 237 ALA 237 214 214 ALA ALA A . n A 1 238 ILE 238 215 215 ILE ILE A . n A 1 239 SER 239 216 216 SER SER A . n A 1 240 GLY 240 217 217 GLY GLY A . n A 1 241 CYS 241 218 218 CYS CYS A . n A 1 242 ASP 242 219 219 ASP ASP A . n A 1 243 ALA 243 220 220 ALA ALA A . n A 1 244 VAL 244 221 221 VAL VAL A . n A 1 245 MSE 245 222 222 MSE MSE A . n A 1 246 ILE 246 223 223 ILE ILE A . n A 1 247 GLY 247 224 224 GLY GLY A . n A 1 248 ARG 248 225 225 ARG ARG A . n A 1 249 GLY 249 226 226 GLY GLY A . n A 1 250 ALA 250 227 227 ALA ALA A . n A 1 251 LEU 251 228 228 LEU LEU A . n A 1 252 ASN 252 229 229 ASN ASN A . n A 1 253 ILE 253 230 230 ILE ILE A . n A 1 254 PRO 254 231 231 PRO PRO A . n A 1 255 ASN 255 232 232 ASN ASN A . n A 1 256 LEU 256 233 233 LEU LEU A . n A 1 257 SER 257 234 234 SER SER A . n A 1 258 ARG 258 235 235 ARG ARG A . n A 1 259 VAL 259 236 236 VAL VAL A . n A 1 260 VAL 260 237 237 VAL VAL A . n A 1 261 LYS 261 238 238 LYS LYS A . n A 1 262 TYR 262 239 239 TYR TYR A . n A 1 263 ASN 263 240 240 ASN ASN A . n A 1 264 GLU 264 241 241 GLU GLU A . n A 1 265 PRO 265 242 242 PRO PRO A . n A 1 266 ARG 266 243 243 ARG ARG A . n A 1 267 MSE 267 244 244 MSE MSE A . n A 1 268 PRO 268 245 245 PRO PRO A . n A 1 269 TRP 269 246 246 TRP TRP A . n A 1 270 PRO 270 247 247 PRO PRO A . n A 1 271 GLU 271 248 248 GLU GLU A . n A 1 272 VAL 272 249 249 VAL VAL A . n A 1 273 VAL 273 250 250 VAL VAL A . n A 1 274 ALA 274 251 251 ALA ALA A . n A 1 275 LEU 275 252 252 LEU LEU A . n A 1 276 LEU 276 253 253 LEU LEU A . n A 1 277 GLN 277 254 254 GLN GLN A . n A 1 278 LYS 278 255 255 LYS LYS A . n A 1 279 TYR 279 256 256 TYR TYR A . n A 1 280 THR 280 257 257 THR THR A . n A 1 281 ARG 281 258 258 ARG ARG A . n A 1 282 LEU 282 259 259 LEU LEU A . n A 1 283 GLU 283 260 260 GLU GLU A . n A 1 284 LYS 284 261 261 LYS LYS A . n A 1 285 GLN 285 262 262 GLN GLN A . n A 1 286 GLY 286 263 263 GLY GLY A . n A 1 287 ASP 287 264 264 ASP ASP A . n A 1 288 THR 288 265 265 THR THR A . n A 1 289 GLY 289 266 266 GLY GLY A . n A 1 290 LEU 290 267 267 LEU LEU A . n A 1 291 TYR 291 268 268 TYR TYR A . n A 1 292 HIS 292 269 269 HIS HIS A . n A 1 293 VAL 293 270 270 VAL VAL A . n A 1 294 ALA 294 271 271 ALA ALA A . n A 1 295 ARG 295 272 272 ARG ARG A . n A 1 296 ILE 296 273 273 ILE ILE A . n A 1 297 LYS 297 274 274 LYS LYS A . n A 1 298 GLN 298 275 275 GLN GLN A . n A 1 299 TRP 299 276 276 TRP TRP A . n A 1 300 LEU 300 277 277 LEU LEU A . n A 1 301 SER 301 278 278 SER SER A . n A 1 302 TYR 302 279 279 TYR TYR A . n A 1 303 LEU 303 280 280 LEU LEU A . n A 1 304 ARG 304 281 281 ARG ARG A . n A 1 305 LYS 305 282 282 LYS LYS A . n A 1 306 GLU 306 283 283 GLU GLU A . n A 1 307 TYR 307 284 284 TYR TYR A . n A 1 308 ASP 308 285 285 ASP ASP A . n A 1 309 GLU 309 286 286 GLU GLU A . n A 1 310 ALA 310 287 287 ALA ALA A . n A 1 311 THR 311 288 288 THR THR A . n A 1 312 GLU 312 289 289 GLU GLU A . n A 1 313 LEU 313 290 290 LEU LEU A . n A 1 314 PHE 314 291 291 PHE PHE A . n A 1 315 GLN 315 292 292 GLN GLN A . n A 1 316 HIS 316 293 293 HIS HIS A . n A 1 317 VAL 317 294 294 VAL VAL A . n A 1 318 ARG 318 295 295 ARG ARG A . n A 1 319 VAL 319 296 296 VAL VAL A . n A 1 320 LEU 320 297 297 LEU LEU A . n A 1 321 ASN 321 298 298 ASN ASN A . n A 1 322 ASN 322 299 299 ASN ASN A . n A 1 323 SER 323 300 300 SER SER A . n A 1 324 PRO 324 301 301 PRO PRO A . n A 1 325 ASP 325 302 302 ASP ASP A . n A 1 326 ILE 326 303 303 ILE ILE A . n A 1 327 ALA 327 304 304 ALA ALA A . n A 1 328 ARG 328 305 305 ARG ARG A . n A 1 329 ALA 329 306 306 ALA ALA A . n A 1 330 ILE 330 307 307 ILE ILE A . n A 1 331 GLN 331 308 308 GLN GLN A . n A 1 332 ALA 332 309 309 ALA ALA A . n A 1 333 ILE 333 310 310 ILE ILE A . n A 1 334 ASP 334 311 311 ASP ASP A . n A 1 335 ILE 335 312 312 ILE ILE A . n A 1 336 GLU 336 313 313 GLU GLU A . n A 1 337 LYS 337 314 314 LYS LYS A . n A 1 338 LEU 338 315 315 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 500 500 FMN FMN A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 21 A MSE -2 ? MET SELENOMETHIONINE 2 A MSE 24 A MSE 1 ? MET SELENOMETHIONINE 3 A MSE 31 A MSE 8 ? MET SELENOMETHIONINE 4 A MSE 149 A MSE 126 ? MET SELENOMETHIONINE 5 A MSE 236 A MSE 213 ? MET SELENOMETHIONINE 6 A MSE 245 A MSE 222 ? MET SELENOMETHIONINE 7 A MSE 267 A MSE 244 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-06 2 'Structure model' 1 1 2015-04-22 3 'Structure model' 1 2 2015-05-13 4 'Structure model' 1 3 2015-05-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 14.3862 31.1483 50.6883 0.0400 0.0228 0.0491 0.0128 -0.0327 0.0045 3.0112 3.0643 1.8682 0.4093 -1.4270 -0.5116 0.0532 0.1903 0.1192 -0.1864 -0.0054 0.1972 -0.1228 -0.1865 -0.0478 'X-RAY DIFFRACTION' 2 ? refined 3.0502 52.6344 60.7238 0.4809 0.1866 0.3886 0.1393 0.1428 0.0180 3.2849 8.3275 8.7067 0.7257 1.0150 -4.0238 -0.0311 0.2774 0.8186 -0.0844 0.2643 0.6487 -1.5297 -0.7064 -0.2333 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -2 ? ? A 228 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 229 ? ? A 315 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUCCANEER 'model building' . ? 1 SCALA 'data scaling' . ? 2 SHELXCD phasing . ? 3 PHASER phasing . ? 4 PARROT phasing . ? 5 BUCCANEER phasing . ? 6 REFMAC refinement 5.7.0032 ? 7 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 11 ? ? -128.85 -55.78 2 1 ASP A 25 ? ? -116.47 59.49 3 1 LEU A 28 ? ? -174.67 135.87 4 1 VAL A 37 ? ? -113.40 -92.10 5 1 SER A 57 ? ? 70.50 33.83 6 1 TRP A 144 ? ? -80.05 -70.03 7 1 LYS A 314 ? ? -67.86 58.84 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -22 ? A MSE 1 2 1 Y 1 A GLY -21 ? A GLY 2 3 1 Y 1 A SER -20 ? A SER 3 4 1 Y 1 A SER -19 ? A SER 4 5 1 Y 1 A HIS -18 ? A HIS 5 6 1 Y 1 A HIS -17 ? A HIS 6 7 1 Y 1 A HIS -16 ? A HIS 7 8 1 Y 1 A HIS -15 ? A HIS 8 9 1 Y 1 A HIS -14 ? A HIS 9 10 1 Y 1 A HIS -13 ? A HIS 10 11 1 Y 1 A SER -12 ? A SER 11 12 1 Y 1 A SER -11 ? A SER 12 13 1 Y 1 A GLY -10 ? A GLY 13 14 1 Y 1 A LEU -9 ? A LEU 14 15 1 Y 1 A VAL -8 ? A VAL 15 16 1 Y 1 A PRO -7 ? A PRO 16 17 1 Y 1 A ARG -6 ? A ARG 17 18 1 Y 1 A GLY -5 ? A GLY 18 19 1 Y 1 A SER -4 ? A SER 19 20 1 Y 1 A HIS -3 ? A HIS 20 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 water HOH #