data_4BLF # _entry.id 4BLF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4BLF pdb_00004blf 10.2210/pdb4blf/pdb PDBE EBI-56281 ? ? WWPDB D_1290056281 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-26 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2017-08-30 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_3d_fitting 2 3 'Structure model' em_image_scans 3 3 'Structure model' em_software 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' em_3d_fitting_list 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_3d_fitting.target_criteria' 2 3 'Structure model' '_em_software.fitting_id' 3 3 'Structure model' '_em_software.image_processing_id' 4 3 'Structure model' '_em_software.name' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_em_3d_fitting_list.accession_code' 8 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 9 4 'Structure model' '_em_3d_fitting_list.source_name' 10 4 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BLF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-05-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-2339 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details 'VARIABLE INTERNAL FLEXIBILITY CHARACTERIZES THE HELICAL HELICAL CAPSID FORMED BY AGROBACTERIUM VIRE2 PROTEIN ON SINGLE-STRANDED DNA' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bharat, T.A.M.' 1 'Zbaida, D.' 2 'Eisenstein, M.' 3 'Frankenstein, Z.' 4 'Mehlman, T.' 5 'Weiner, L.' 6 'Sorzano, C.O.S.' 7 'Barak, Y.' 8 'Albeck, S.' 9 'Briggs, J.A.G.' 10 'Wolf, S.G.' 11 'Elbaum, M.' 12 # _citation.id primary _citation.title 'Variable Internal Flexibility Characterizes the Helical Capsid Formed by Agrobacterium Vire2 Protein on Single-Stranded DNA.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1158 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23769668 _citation.pdbx_database_id_DOI 10.1016/J.STR.2013.04.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bharat, T.A.M.' 1 ? primary 'Zbaida, D.' 2 ? primary 'Eisenstein, M.' 3 ? primary 'Frankenstein, Z.' 4 ? primary 'Mehlman, T.' 5 ? primary 'Weiner, L.' 6 ? primary 'Sorzano, C.O.S.' 7 ? primary 'Barak, Y.' 8 ? primary 'Albeck, S.' 9 ? primary 'Briggs, J.A.G.' 10 ? primary 'Wolf, S.G.' 11 ? primary 'Elbaum, M.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'SINGLE-STRAND DNA-BINDING PROTEIN' _entity.formula_weight 26667.943 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'N-TERMINAL DOMAIN, RESIDUES 112-337' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '63.5 KDA VIRULENCE PROTEIN, VIRE2 PROTEIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RRTDEYILVRQTGQDKFAGTTKCNLDHLPTKAEFNASCRLYRDGVGNYYPPPLAFERIDLPEQLAAQLHNLEPREQSKQC FQYKLEVWNRAHAEMGITGTDIFYQTDKNIKLDRNYKLRPEDRYIQTEKYGRREIQKRYEHQFQAGSLLPDILIKTPQND IHFSYRFAGDAYANKRFEEFERAIKTKYGSDTEIKLKSKSGIMHDSKYLESWERGSADIRFAEFAG ; _entity_poly.pdbx_seq_one_letter_code_can ;RRTDEYILVRQTGQDKFAGTTKCNLDHLPTKAEFNASCRLYRDGVGNYYPPPLAFERIDLPEQLAAQLHNLEPREQSKQC FQYKLEVWNRAHAEMGITGTDIFYQTDKNIKLDRNYKLRPEDRYIQTEKYGRREIQKRYEHQFQAGSLLPDILIKTPQND IHFSYRFAGDAYANKRFEEFERAIKTKYGSDTEIKLKSKSGIMHDSKYLESWERGSADIRFAEFAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ARG n 1 3 THR n 1 4 ASP n 1 5 GLU n 1 6 TYR n 1 7 ILE n 1 8 LEU n 1 9 VAL n 1 10 ARG n 1 11 GLN n 1 12 THR n 1 13 GLY n 1 14 GLN n 1 15 ASP n 1 16 LYS n 1 17 PHE n 1 18 ALA n 1 19 GLY n 1 20 THR n 1 21 THR n 1 22 LYS n 1 23 CYS n 1 24 ASN n 1 25 LEU n 1 26 ASP n 1 27 HIS n 1 28 LEU n 1 29 PRO n 1 30 THR n 1 31 LYS n 1 32 ALA n 1 33 GLU n 1 34 PHE n 1 35 ASN n 1 36 ALA n 1 37 SER n 1 38 CYS n 1 39 ARG n 1 40 LEU n 1 41 TYR n 1 42 ARG n 1 43 ASP n 1 44 GLY n 1 45 VAL n 1 46 GLY n 1 47 ASN n 1 48 TYR n 1 49 TYR n 1 50 PRO n 1 51 PRO n 1 52 PRO n 1 53 LEU n 1 54 ALA n 1 55 PHE n 1 56 GLU n 1 57 ARG n 1 58 ILE n 1 59 ASP n 1 60 LEU n 1 61 PRO n 1 62 GLU n 1 63 GLN n 1 64 LEU n 1 65 ALA n 1 66 ALA n 1 67 GLN n 1 68 LEU n 1 69 HIS n 1 70 ASN n 1 71 LEU n 1 72 GLU n 1 73 PRO n 1 74 ARG n 1 75 GLU n 1 76 GLN n 1 77 SER n 1 78 LYS n 1 79 GLN n 1 80 CYS n 1 81 PHE n 1 82 GLN n 1 83 TYR n 1 84 LYS n 1 85 LEU n 1 86 GLU n 1 87 VAL n 1 88 TRP n 1 89 ASN n 1 90 ARG n 1 91 ALA n 1 92 HIS n 1 93 ALA n 1 94 GLU n 1 95 MET n 1 96 GLY n 1 97 ILE n 1 98 THR n 1 99 GLY n 1 100 THR n 1 101 ASP n 1 102 ILE n 1 103 PHE n 1 104 TYR n 1 105 GLN n 1 106 THR n 1 107 ASP n 1 108 LYS n 1 109 ASN n 1 110 ILE n 1 111 LYS n 1 112 LEU n 1 113 ASP n 1 114 ARG n 1 115 ASN n 1 116 TYR n 1 117 LYS n 1 118 LEU n 1 119 ARG n 1 120 PRO n 1 121 GLU n 1 122 ASP n 1 123 ARG n 1 124 TYR n 1 125 ILE n 1 126 GLN n 1 127 THR n 1 128 GLU n 1 129 LYS n 1 130 TYR n 1 131 GLY n 1 132 ARG n 1 133 ARG n 1 134 GLU n 1 135 ILE n 1 136 GLN n 1 137 LYS n 1 138 ARG n 1 139 TYR n 1 140 GLU n 1 141 HIS n 1 142 GLN n 1 143 PHE n 1 144 GLN n 1 145 ALA n 1 146 GLY n 1 147 SER n 1 148 LEU n 1 149 LEU n 1 150 PRO n 1 151 ASP n 1 152 ILE n 1 153 LEU n 1 154 ILE n 1 155 LYS n 1 156 THR n 1 157 PRO n 1 158 GLN n 1 159 ASN n 1 160 ASP n 1 161 ILE n 1 162 HIS n 1 163 PHE n 1 164 SER n 1 165 TYR n 1 166 ARG n 1 167 PHE n 1 168 ALA n 1 169 GLY n 1 170 ASP n 1 171 ALA n 1 172 TYR n 1 173 ALA n 1 174 ASN n 1 175 LYS n 1 176 ARG n 1 177 PHE n 1 178 GLU n 1 179 GLU n 1 180 PHE n 1 181 GLU n 1 182 ARG n 1 183 ALA n 1 184 ILE n 1 185 LYS n 1 186 THR n 1 187 LYS n 1 188 TYR n 1 189 GLY n 1 190 SER n 1 191 ASP n 1 192 THR n 1 193 GLU n 1 194 ILE n 1 195 LYS n 1 196 LEU n 1 197 LYS n 1 198 SER n 1 199 LYS n 1 200 SER n 1 201 GLY n 1 202 ILE n 1 203 MET n 1 204 HIS n 1 205 ASP n 1 206 SER n 1 207 LYS n 1 208 TYR n 1 209 LEU n 1 210 GLU n 1 211 SER n 1 212 TRP n 1 213 GLU n 1 214 ARG n 1 215 GLY n 1 216 SER n 1 217 ALA n 1 218 ASP n 1 219 ILE n 1 220 ARG n 1 221 PHE n 1 222 ALA n 1 223 GLU n 1 224 PHE n 1 225 ALA n 1 226 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'AGROBACTERIUM TUMEFACIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 358 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 112 112 ARG ARG A . n A 1 2 ARG 2 113 113 ARG ARG A . n A 1 3 THR 3 114 114 THR THR A . n A 1 4 ASP 4 115 115 ASP ASP A . n A 1 5 GLU 5 116 116 GLU GLU A . n A 1 6 TYR 6 117 117 TYR TYR A . n A 1 7 ILE 7 118 118 ILE ILE A . n A 1 8 LEU 8 119 119 LEU LEU A . n A 1 9 VAL 9 120 120 VAL VAL A . n A 1 10 ARG 10 121 121 ARG ARG A . n A 1 11 GLN 11 122 122 GLN GLN A . n A 1 12 THR 12 123 123 THR THR A . n A 1 13 GLY 13 124 124 GLY GLY A . n A 1 14 GLN 14 125 125 GLN GLN A . n A 1 15 ASP 15 126 126 ASP ASP A . n A 1 16 LYS 16 127 127 LYS LYS A . n A 1 17 PHE 17 128 128 PHE PHE A . n A 1 18 ALA 18 129 129 ALA ALA A . n A 1 19 GLY 19 130 130 GLY GLY A . n A 1 20 THR 20 131 131 THR THR A . n A 1 21 THR 21 132 132 THR THR A . n A 1 22 LYS 22 133 133 LYS LYS A . n A 1 23 CYS 23 134 134 CYS CYS A . n A 1 24 ASN 24 135 135 ASN ASN A . n A 1 25 LEU 25 136 136 LEU LEU A . n A 1 26 ASP 26 137 137 ASP ASP A . n A 1 27 HIS 27 138 138 HIS HIS A . n A 1 28 LEU 28 139 139 LEU LEU A . n A 1 29 PRO 29 140 140 PRO PRO A . n A 1 30 THR 30 141 141 THR THR A . n A 1 31 LYS 31 142 142 LYS LYS A . n A 1 32 ALA 32 143 143 ALA ALA A . n A 1 33 GLU 33 144 144 GLU GLU A . n A 1 34 PHE 34 145 145 PHE PHE A . n A 1 35 ASN 35 146 146 ASN ASN A . n A 1 36 ALA 36 147 147 ALA ALA A . n A 1 37 SER 37 148 148 SER SER A . n A 1 38 CYS 38 149 149 CYS CYS A . n A 1 39 ARG 39 150 150 ARG ARG A . n A 1 40 LEU 40 151 151 LEU LEU A . n A 1 41 TYR 41 152 152 TYR TYR A . n A 1 42 ARG 42 153 153 ARG ARG A . n A 1 43 ASP 43 154 154 ASP ASP A . n A 1 44 GLY 44 155 155 GLY GLY A . n A 1 45 VAL 45 156 156 VAL VAL A . n A 1 46 GLY 46 157 157 GLY GLY A . n A 1 47 ASN 47 158 158 ASN ASN A . n A 1 48 TYR 48 159 159 TYR TYR A . n A 1 49 TYR 49 160 160 TYR TYR A . n A 1 50 PRO 50 161 161 PRO PRO A . n A 1 51 PRO 51 162 162 PRO PRO A . n A 1 52 PRO 52 163 163 PRO PRO A . n A 1 53 LEU 53 164 164 LEU LEU A . n A 1 54 ALA 54 165 165 ALA ALA A . n A 1 55 PHE 55 166 166 PHE PHE A . n A 1 56 GLU 56 167 167 GLU GLU A . n A 1 57 ARG 57 168 168 ARG ARG A . n A 1 58 ILE 58 169 169 ILE ILE A . n A 1 59 ASP 59 170 170 ASP ASP A . n A 1 60 LEU 60 171 171 LEU LEU A . n A 1 61 PRO 61 172 172 PRO PRO A . n A 1 62 GLU 62 173 173 GLU GLU A . n A 1 63 GLN 63 174 174 GLN GLN A . n A 1 64 LEU 64 175 175 LEU LEU A . n A 1 65 ALA 65 176 176 ALA ALA A . n A 1 66 ALA 66 177 177 ALA ALA A . n A 1 67 GLN 67 178 178 GLN GLN A . n A 1 68 LEU 68 179 179 LEU LEU A . n A 1 69 HIS 69 180 ? ? ? A . n A 1 70 ASN 70 181 ? ? ? A . n A 1 71 LEU 71 182 182 LEU LEU A . n A 1 72 GLU 72 183 183 GLU GLU A . n A 1 73 PRO 73 184 184 PRO PRO A . n A 1 74 ARG 74 185 185 ARG ARG A . n A 1 75 GLU 75 186 186 GLU GLU A . n A 1 76 GLN 76 187 187 GLN GLN A . n A 1 77 SER 77 188 188 SER SER A . n A 1 78 LYS 78 189 189 LYS LYS A . n A 1 79 GLN 79 190 190 GLN GLN A . n A 1 80 CYS 80 191 191 CYS CYS A . n A 1 81 PHE 81 192 192 PHE PHE A . n A 1 82 GLN 82 193 193 GLN GLN A . n A 1 83 TYR 83 194 194 TYR TYR A . n A 1 84 LYS 84 195 195 LYS LYS A . n A 1 85 LEU 85 196 196 LEU LEU A . n A 1 86 GLU 86 197 197 GLU GLU A . n A 1 87 VAL 87 198 198 VAL VAL A . n A 1 88 TRP 88 199 199 TRP TRP A . n A 1 89 ASN 89 200 200 ASN ASN A . n A 1 90 ARG 90 201 201 ARG ARG A . n A 1 91 ALA 91 202 202 ALA ALA A . n A 1 92 HIS 92 203 203 HIS HIS A . n A 1 93 ALA 93 204 204 ALA ALA A . n A 1 94 GLU 94 205 205 GLU GLU A . n A 1 95 MET 95 206 206 MET MET A . n A 1 96 GLY 96 207 207 GLY GLY A . n A 1 97 ILE 97 208 208 ILE ILE A . n A 1 98 THR 98 209 209 THR THR A . n A 1 99 GLY 99 210 210 GLY GLY A . n A 1 100 THR 100 211 211 THR THR A . n A 1 101 ASP 101 212 212 ASP ASP A . n A 1 102 ILE 102 213 213 ILE ILE A . n A 1 103 PHE 103 214 214 PHE PHE A . n A 1 104 TYR 104 215 215 TYR TYR A . n A 1 105 GLN 105 216 216 GLN GLN A . n A 1 106 THR 106 217 217 THR THR A . n A 1 107 ASP 107 218 218 ASP ASP A . n A 1 108 LYS 108 219 219 LYS LYS A . n A 1 109 ASN 109 220 220 ASN ASN A . n A 1 110 ILE 110 221 221 ILE ILE A . n A 1 111 LYS 111 222 222 LYS LYS A . n A 1 112 LEU 112 223 223 LEU LEU A . n A 1 113 ASP 113 224 224 ASP ASP A . n A 1 114 ARG 114 225 225 ARG ARG A . n A 1 115 ASN 115 226 226 ASN ASN A . n A 1 116 TYR 116 227 227 TYR TYR A . n A 1 117 LYS 117 228 228 LYS LYS A . n A 1 118 LEU 118 229 229 LEU LEU A . n A 1 119 ARG 119 230 230 ARG ARG A . n A 1 120 PRO 120 231 231 PRO PRO A . n A 1 121 GLU 121 232 232 GLU GLU A . n A 1 122 ASP 122 233 233 ASP ASP A . n A 1 123 ARG 123 234 234 ARG ARG A . n A 1 124 TYR 124 235 235 TYR TYR A . n A 1 125 ILE 125 236 236 ILE ILE A . n A 1 126 GLN 126 237 237 GLN GLN A . n A 1 127 THR 127 238 238 THR THR A . n A 1 128 GLU 128 239 239 GLU GLU A . n A 1 129 LYS 129 240 240 LYS LYS A . n A 1 130 TYR 130 241 241 TYR TYR A . n A 1 131 GLY 131 242 242 GLY GLY A . n A 1 132 ARG 132 243 243 ARG ARG A . n A 1 133 ARG 133 244 244 ARG ARG A . n A 1 134 GLU 134 245 245 GLU GLU A . n A 1 135 ILE 135 246 246 ILE ILE A . n A 1 136 GLN 136 247 247 GLN GLN A . n A 1 137 LYS 137 248 248 LYS LYS A . n A 1 138 ARG 138 249 249 ARG ARG A . n A 1 139 TYR 139 250 250 TYR TYR A . n A 1 140 GLU 140 251 251 GLU GLU A . n A 1 141 HIS 141 252 252 HIS HIS A . n A 1 142 GLN 142 253 253 GLN GLN A . n A 1 143 PHE 143 254 254 PHE PHE A . n A 1 144 GLN 144 255 255 GLN GLN A . n A 1 145 ALA 145 256 256 ALA ALA A . n A 1 146 GLY 146 257 257 GLY GLY A . n A 1 147 SER 147 258 258 SER SER A . n A 1 148 LEU 148 259 259 LEU LEU A . n A 1 149 LEU 149 260 260 LEU LEU A . n A 1 150 PRO 150 261 261 PRO PRO A . n A 1 151 ASP 151 262 262 ASP ASP A . n A 1 152 ILE 152 263 263 ILE ILE A . n A 1 153 LEU 153 264 264 LEU LEU A . n A 1 154 ILE 154 265 265 ILE ILE A . n A 1 155 LYS 155 266 266 LYS LYS A . n A 1 156 THR 156 267 267 THR THR A . n A 1 157 PRO 157 268 268 PRO PRO A . n A 1 158 GLN 158 269 269 GLN GLN A . n A 1 159 ASN 159 270 270 ASN ASN A . n A 1 160 ASP 160 271 271 ASP ASP A . n A 1 161 ILE 161 272 272 ILE ILE A . n A 1 162 HIS 162 273 273 HIS HIS A . n A 1 163 PHE 163 274 274 PHE PHE A . n A 1 164 SER 164 275 275 SER SER A . n A 1 165 TYR 165 276 276 TYR TYR A . n A 1 166 ARG 166 277 277 ARG ARG A . n A 1 167 PHE 167 278 278 PHE PHE A . n A 1 168 ALA 168 279 279 ALA ALA A . n A 1 169 GLY 169 280 280 GLY GLY A . n A 1 170 ASP 170 281 281 ASP ASP A . n A 1 171 ALA 171 282 282 ALA ALA A . n A 1 172 TYR 172 283 283 TYR TYR A . n A 1 173 ALA 173 284 284 ALA ALA A . n A 1 174 ASN 174 285 285 ASN ASN A . n A 1 175 LYS 175 286 286 LYS LYS A . n A 1 176 ARG 176 287 287 ARG ARG A . n A 1 177 PHE 177 288 288 PHE PHE A . n A 1 178 GLU 178 289 289 GLU GLU A . n A 1 179 GLU 179 290 290 GLU GLU A . n A 1 180 PHE 180 291 291 PHE PHE A . n A 1 181 GLU 181 292 292 GLU GLU A . n A 1 182 ARG 182 293 293 ARG ARG A . n A 1 183 ALA 183 294 294 ALA ALA A . n A 1 184 ILE 184 295 295 ILE ILE A . n A 1 185 LYS 185 296 296 LYS LYS A . n A 1 186 THR 186 297 297 THR THR A . n A 1 187 LYS 187 298 298 LYS LYS A . n A 1 188 TYR 188 299 299 TYR TYR A . n A 1 189 GLY 189 300 300 GLY GLY A . n A 1 190 SER 190 301 301 SER SER A . n A 1 191 ASP 191 302 302 ASP ASP A . n A 1 192 THR 192 303 303 THR THR A . n A 1 193 GLU 193 304 304 GLU GLU A . n A 1 194 ILE 194 305 305 ILE ILE A . n A 1 195 LYS 195 306 306 LYS LYS A . n A 1 196 LEU 196 307 307 LEU LEU A . n A 1 197 LYS 197 308 308 LYS LYS A . n A 1 198 SER 198 309 309 SER SER A . n A 1 199 LYS 199 310 310 LYS LYS A . n A 1 200 SER 200 311 311 SER SER A . n A 1 201 GLY 201 312 312 GLY GLY A . n A 1 202 ILE 202 313 313 ILE ILE A . n A 1 203 MET 203 314 314 MET MET A . n A 1 204 HIS 204 315 315 HIS HIS A . n A 1 205 ASP 205 316 316 ASP ASP A . n A 1 206 SER 206 317 317 SER SER A . n A 1 207 LYS 207 318 318 LYS LYS A . n A 1 208 TYR 208 319 319 TYR TYR A . n A 1 209 LEU 209 320 320 LEU LEU A . n A 1 210 GLU 210 321 321 GLU GLU A . n A 1 211 SER 211 322 322 SER SER A . n A 1 212 TRP 212 323 323 TRP TRP A . n A 1 213 GLU 213 324 324 GLU GLU A . n A 1 214 ARG 214 325 325 ARG ARG A . n A 1 215 GLY 215 326 326 GLY GLY A . n A 1 216 SER 216 327 327 SER SER A . n A 1 217 ALA 217 328 328 ALA ALA A . n A 1 218 ASP 218 329 329 ASP ASP A . n A 1 219 ILE 219 330 330 ILE ILE A . n A 1 220 ARG 220 331 331 ARG ARG A . n A 1 221 PHE 221 332 332 PHE PHE A . n A 1 222 ALA 222 333 333 ALA ALA A . n A 1 223 GLU 223 334 334 GLU GLU A . n A 1 224 PHE 224 335 335 PHE PHE A . n A 1 225 ALA 225 336 336 ALA ALA A . n A 1 226 GLY 226 337 337 GLY GLY A . n # _cell.entry_id 4BLF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BLF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 4BLF _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4BLF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 20.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1863 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1863 _refine_hist.d_res_high 20.00 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 4BLF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4BLF _struct.title 'Variable internal flexibility characterizes the helical capsid formed by Agrobacterium VirE2 protein on single-stranded DNA.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BLF _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA BINDING PROTEIN, TCOMPLEX, AGROBACTERIUM, HELICAL RECONSTRUCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VIRE2_AGRT5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P08062 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4BLF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 226 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08062 _struct_ref_seq.db_align_beg 112 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 337 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 112 _struct_ref_seq.pdbx_auth_seq_align_end 337 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4BLF _struct_ref_seq_dif.mon_id LEU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 60 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P08062 _struct_ref_seq_dif.db_mon_id ILE _struct_ref_seq_dif.pdbx_seq_db_seq_num 171 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 171 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 23 ? LEU A 25 ? CYS A 134 LEU A 136 5 ? 3 HELX_P HELX_P2 2 THR A 30 ? SER A 37 ? THR A 141 SER A 148 1 ? 8 HELX_P HELX_P3 3 PRO A 50 ? ARG A 57 ? PRO A 161 ARG A 168 1 ? 8 HELX_P HELX_P4 4 PRO A 61 ? GLN A 67 ? PRO A 172 GLN A 178 1 ? 7 HELX_P HELX_P5 5 ARG A 74 ? GLY A 96 ? ARG A 185 GLY A 207 1 ? 23 HELX_P HELX_P6 6 ARG A 119 ? ASP A 122 ? ARG A 230 ASP A 233 5 ? 4 HELX_P HELX_P7 7 ARG A 176 ? GLY A 189 ? ARG A 287 GLY A 300 1 ? 14 HELX_P HELX_P8 8 SER A 206 ? GLU A 213 ? SER A 317 GLU A 324 1 ? 8 HELX_P HELX_P9 9 GLY A 215 ? ALA A 225 ? GLY A 326 ALA A 336 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 72 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 183 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 73 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 184 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -29.73 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 2 ? AC ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 16 ? THR A 21 ? LYS A 127 THR A 132 AA 2 TYR A 6 ? GLY A 13 ? TYR A 117 GLY A 124 AA 3 CYS A 38 ? ARG A 42 ? CYS A 149 ARG A 153 AA 4 TYR A 48 ? TYR A 49 ? TYR A 159 TYR A 160 AB 1 TYR A 124 ? GLN A 126 ? TYR A 235 GLN A 237 AB 2 ARG A 132 ? GLU A 134 ? ARG A 243 GLU A 245 AC 1 ILE A 161 ? SER A 164 ? ILE A 272 SER A 275 AC 2 ILE A 152 ? LYS A 155 ? ILE A 263 LYS A 266 AC 3 GLU A 193 ? LYS A 197 ? GLU A 304 LYS A 308 AC 4 MET A 203 ? ASP A 205 ? MET A 314 ASP A 316 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 20 ? N THR A 131 O LEU A 8 ? O LEU A 119 AA 2 3 N VAL A 9 ? N VAL A 120 O CYS A 38 ? O CYS A 149 AA 3 4 N TYR A 41 ? N TYR A 152 O TYR A 49 ? O TYR A 160 AB 1 2 N ILE A 125 ? N ILE A 236 O ARG A 133 ? O ARG A 244 AC 1 2 N SER A 164 ? N SER A 275 O ILE A 152 ? O ILE A 263 AC 2 3 N LYS A 155 ? N LYS A 266 O GLU A 193 ? O GLU A 304 AC 3 4 N LEU A 196 ? N LEU A 307 O HIS A 204 ? O HIS A 315 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 167 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NZ _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 195 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.88 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 116 ? ? CD A GLU 116 ? ? 1.609 1.515 0.094 0.015 N 2 1 CA A ALA 165 ? ? CB A ALA 165 ? ? 1.661 1.520 0.141 0.021 N 3 1 C A GLU 167 ? ? N A ARG 168 ? ? 1.612 1.336 0.276 0.023 Y 4 1 N A ASP 170 ? ? CA A ASP 170 ? ? 1.621 1.459 0.162 0.020 N 5 1 CG A ASP 170 ? ? OD2 A ASP 170 ? ? 1.397 1.249 0.148 0.023 N 6 1 CA A LEU 171 ? ? CB A LEU 171 ? ? 1.671 1.533 0.138 0.023 N 7 1 CB A LEU 171 ? ? CG A LEU 171 ? ? 1.705 1.521 0.184 0.029 N 8 1 N A PRO 172 ? ? CA A PRO 172 ? ? 1.704 1.468 0.236 0.017 N 9 1 CG A PRO 172 ? ? CD A PRO 172 ? ? 1.787 1.502 0.285 0.033 N 10 1 CD A PRO 172 ? ? N A PRO 172 ? ? 1.634 1.474 0.160 0.014 N 11 1 CA A PRO 172 ? ? C A PRO 172 ? ? 1.783 1.524 0.259 0.020 N 12 1 C A PRO 172 ? ? O A PRO 172 ? ? 1.349 1.228 0.121 0.020 N 13 1 N A GLU 173 ? ? CA A GLU 173 ? ? 1.734 1.459 0.275 0.020 N 14 1 CA A GLU 173 ? ? CB A GLU 173 ? ? 1.723 1.535 0.188 0.022 N 15 1 CB A GLU 173 ? ? CG A GLU 173 ? ? 1.842 1.517 0.325 0.019 N 16 1 CG A GLU 173 ? ? CD A GLU 173 ? ? 1.806 1.515 0.291 0.015 N 17 1 CD A GLU 173 ? ? OE1 A GLU 173 ? ? 1.447 1.252 0.195 0.011 N 18 1 CD A GLU 173 ? ? OE2 A GLU 173 ? ? 1.461 1.252 0.209 0.011 N 19 1 C A GLU 173 ? ? O A GLU 173 ? ? 1.417 1.229 0.188 0.019 N 20 1 CA A GLN 174 ? ? CB A GLN 174 ? ? 1.777 1.535 0.242 0.022 N 21 1 CB A GLN 174 ? ? CG A GLN 174 ? ? 1.773 1.521 0.252 0.027 N 22 1 CG A GLN 174 ? ? CD A GLN 174 ? ? 1.809 1.506 0.303 0.023 N 23 1 CD A GLN 174 ? ? OE1 A GLN 174 ? ? 1.405 1.235 0.170 0.022 N 24 1 C A GLN 174 ? ? O A GLN 174 ? ? 1.396 1.229 0.167 0.019 N 25 1 C A GLN 174 ? ? N A LEU 175 ? ? 1.560 1.336 0.224 0.023 Y 26 1 N A LEU 175 ? ? CA A LEU 175 ? ? 1.624 1.459 0.165 0.020 N 27 1 CA A LEU 175 ? ? CB A LEU 175 ? ? 1.793 1.533 0.260 0.023 N 28 1 CG A LEU 175 ? ? CD1 A LEU 175 ? ? 1.770 1.514 0.256 0.037 N 29 1 CG A LEU 175 ? ? CD2 A LEU 175 ? ? 1.806 1.514 0.292 0.037 N 30 1 CA A LEU 175 ? ? C A LEU 175 ? ? 1.766 1.525 0.241 0.026 N 31 1 N A ALA 176 ? ? CA A ALA 176 ? ? 1.696 1.459 0.237 0.020 N 32 1 CA A ALA 176 ? ? C A ALA 176 ? ? 1.796 1.525 0.271 0.026 N 33 1 C A ALA 176 ? ? O A ALA 176 ? ? 1.352 1.229 0.123 0.019 N 34 1 C A ALA 176 ? ? N A ALA 177 ? ? 1.551 1.336 0.215 0.023 Y 35 1 N A ALA 177 ? ? CA A ALA 177 ? ? 1.739 1.459 0.280 0.020 N 36 1 CA A ALA 177 ? ? CB A ALA 177 ? ? 1.807 1.520 0.287 0.021 N 37 1 C A ALA 177 ? ? O A ALA 177 ? ? 1.427 1.229 0.198 0.019 N 38 1 C A ALA 177 ? ? N A GLN 178 ? ? 1.548 1.336 0.212 0.023 Y 39 1 CA A GLN 178 ? ? CB A GLN 178 ? ? 1.785 1.535 0.250 0.022 N 40 1 CG A GLN 178 ? ? CD A GLN 178 ? ? 1.791 1.506 0.285 0.023 N 41 1 CD A GLN 178 ? ? NE2 A GLN 178 ? ? 1.491 1.324 0.167 0.025 N 42 1 CA A GLN 178 ? ? C A GLN 178 ? ? 1.749 1.525 0.224 0.026 N 43 1 C A GLN 178 ? ? O A GLN 178 ? ? 1.357 1.229 0.128 0.019 N 44 1 C A GLN 178 ? ? N A LEU 179 ? ? 1.541 1.336 0.205 0.023 Y 45 1 N A LEU 179 ? ? CA A LEU 179 ? ? 1.729 1.459 0.270 0.020 N 46 1 CA A LEU 179 ? ? CB A LEU 179 ? ? 1.752 1.533 0.219 0.023 N 47 1 CB A LEU 179 ? ? CG A LEU 179 ? ? 1.752 1.521 0.231 0.029 N 48 1 CA A LEU 179 ? ? C A LEU 179 ? ? 1.742 1.525 0.217 0.026 N 49 1 N A LEU 182 ? ? CA A LEU 182 ? ? 1.649 1.459 0.190 0.020 N 50 1 CA A LEU 182 ? ? CB A LEU 182 ? ? 1.689 1.533 0.156 0.023 N 51 1 CG A LEU 182 ? ? CD2 A LEU 182 ? ? 1.769 1.514 0.255 0.037 N 52 1 C A LEU 182 ? ? N A GLU 183 ? ? 1.572 1.336 0.236 0.023 Y 53 1 N A GLU 183 ? ? CA A GLU 183 ? ? 1.597 1.459 0.138 0.020 N 54 1 CA A GLU 183 ? ? CB A GLU 183 ? ? 1.766 1.535 0.231 0.022 N 55 1 CB A GLU 183 ? ? CG A GLU 183 ? ? 1.750 1.517 0.233 0.019 N 56 1 CG A GLU 183 ? ? CD A GLU 183 ? ? 1.742 1.515 0.227 0.015 N 57 1 CD A GLU 183 ? ? OE1 A GLU 183 ? ? 1.391 1.252 0.139 0.011 N 58 1 CD A GLU 183 ? ? OE2 A GLU 183 ? ? 1.371 1.252 0.119 0.011 N 59 1 CA A GLU 183 ? ? C A GLU 183 ? ? 1.811 1.525 0.286 0.026 N 60 1 C A GLU 183 ? ? N A PRO 184 ? ? 1.483 1.338 0.145 0.019 Y 61 1 CA A PRO 184 ? ? CB A PRO 184 ? ? 1.747 1.533 0.214 0.018 N 62 1 CD A PRO 184 ? ? N A PRO 184 ? ? 1.716 1.474 0.242 0.014 N 63 1 CA A PRO 184 ? ? C A PRO 184 ? ? 1.770 1.524 0.246 0.020 N 64 1 C A PRO 184 ? ? N A ARG 185 ? ? 1.539 1.336 0.203 0.023 Y 65 1 N A ARG 185 ? ? CA A ARG 185 ? ? 1.732 1.459 0.273 0.020 N 66 1 CA A ARG 185 ? ? CB A ARG 185 ? ? 1.711 1.535 0.176 0.022 N 67 1 CB A ARG 185 ? ? CG A ARG 185 ? ? 1.759 1.521 0.238 0.027 N 68 1 CD A ARG 185 ? ? NE A ARG 185 ? ? 1.687 1.460 0.227 0.017 N 69 1 NE A ARG 185 ? ? CZ A ARG 185 ? ? 1.536 1.326 0.210 0.013 N 70 1 CZ A ARG 185 ? ? NH1 A ARG 185 ? ? 1.407 1.326 0.081 0.013 N 71 1 CZ A ARG 185 ? ? NH2 A ARG 185 ? ? 1.519 1.326 0.193 0.013 N 72 1 CA A ARG 185 ? ? C A ARG 185 ? ? 1.739 1.525 0.214 0.026 N 73 1 C A ARG 185 ? ? O A ARG 185 ? ? 1.477 1.229 0.248 0.019 N 74 1 N A GLU 186 ? ? CA A GLU 186 ? ? 1.682 1.459 0.223 0.020 N 75 1 CG A GLU 186 ? ? CD A GLU 186 ? ? 1.776 1.515 0.261 0.015 N 76 1 CD A GLU 186 ? ? OE1 A GLU 186 ? ? 1.458 1.252 0.206 0.011 N 77 1 CD A GLU 186 ? ? OE2 A GLU 186 ? ? 1.427 1.252 0.175 0.011 N 78 1 C A GLU 186 ? ? O A GLU 186 ? ? 1.404 1.229 0.175 0.019 N 79 1 CA A GLN 187 ? ? CB A GLN 187 ? ? 1.696 1.535 0.161 0.022 N 80 1 CG A GLN 187 ? ? CD A GLN 187 ? ? 1.790 1.506 0.284 0.023 N 81 1 CA A GLN 187 ? ? C A GLN 187 ? ? 1.730 1.525 0.205 0.026 N 82 1 C A GLN 187 ? ? O A GLN 187 ? ? 1.424 1.229 0.195 0.019 N 83 1 N A SER 188 ? ? CA A SER 188 ? ? 1.667 1.459 0.208 0.020 N 84 1 CA A SER 188 ? ? CB A SER 188 ? ? 1.788 1.525 0.263 0.015 N 85 1 CB A SER 188 ? ? OG A SER 188 ? ? 1.511 1.418 0.093 0.013 N 86 1 CA A SER 188 ? ? C A SER 188 ? ? 1.703 1.525 0.178 0.026 N 87 1 C A SER 188 ? ? O A SER 188 ? ? 1.408 1.229 0.179 0.019 N 88 1 N A LYS 189 ? ? CA A LYS 189 ? ? 1.624 1.459 0.165 0.020 N 89 1 CB A LYS 189 ? ? CG A LYS 189 ? ? 1.712 1.521 0.191 0.027 N 90 1 CD A LYS 189 ? ? CE A LYS 189 ? ? 1.804 1.508 0.296 0.025 N 91 1 CE A LYS 189 ? ? NZ A LYS 189 ? ? 1.711 1.486 0.225 0.025 N 92 1 CA A LYS 189 ? ? C A LYS 189 ? ? 1.793 1.525 0.268 0.026 N 93 1 C A LYS 189 ? ? O A LYS 189 ? ? 1.435 1.229 0.206 0.019 N 94 1 N A GLN 190 ? ? CA A GLN 190 ? ? 1.691 1.459 0.232 0.020 N 95 1 CA A GLN 190 ? ? CB A GLN 190 ? ? 1.756 1.535 0.221 0.022 N 96 1 CG A GLN 190 ? ? CD A GLN 190 ? ? 1.691 1.506 0.185 0.023 N 97 1 CD A GLN 190 ? ? NE2 A GLN 190 ? ? 1.520 1.324 0.196 0.025 N 98 1 C A GLN 190 ? ? O A GLN 190 ? ? 1.419 1.229 0.190 0.019 N 99 1 CB A CYS 191 ? ? SG A CYS 191 ? ? 2.030 1.818 0.212 0.017 N 100 1 CA A CYS 191 ? ? C A CYS 191 ? ? 1.748 1.525 0.223 0.026 N 101 1 C A CYS 191 ? ? O A CYS 191 ? ? 1.375 1.229 0.146 0.019 N 102 1 CE2 A TYR 194 ? ? CD2 A TYR 194 ? ? 1.496 1.389 0.107 0.015 N 103 1 C A LYS 195 ? ? N A LEU 196 ? ? 1.496 1.336 0.160 0.023 Y 104 1 C A ARG 201 ? ? N A ALA 202 ? ? 1.168 1.336 -0.168 0.023 Y 105 1 C A THR 211 ? ? N A ASP 212 ? ? 1.497 1.336 0.161 0.023 Y 106 1 CB A GLU 324 ? ? CG A GLU 324 ? ? 1.646 1.517 0.129 0.019 N 107 1 CG A GLU 324 ? ? CD A GLU 324 ? ? 1.639 1.515 0.124 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 113 ? ? CZ A ARG 113 ? ? NH2 A ARG 113 ? ? 116.69 120.30 -3.61 0.50 N 2 1 CA A ILE 169 ? ? C A ILE 169 ? ? N A ASP 170 ? ? 139.78 117.20 22.58 2.20 Y 3 1 O A ILE 169 ? ? C A ILE 169 ? ? N A ASP 170 ? ? 97.12 122.70 -25.58 1.60 Y 4 1 CA A LEU 179 ? ? CB A LEU 179 ? ? CG A LEU 179 ? ? 134.75 115.30 19.45 2.30 N 5 1 N A GLU 183 ? ? CA A GLU 183 ? ? C A GLU 183 ? ? 132.11 111.00 21.11 2.70 N 6 1 CA A GLU 183 ? ? C A GLU 183 ? ? N A PRO 184 ? ? 135.14 117.10 18.04 2.80 Y 7 1 O A GLU 183 ? ? C A GLU 183 ? ? N A PRO 184 ? ? 109.35 121.10 -11.75 1.90 Y 8 1 NE A ARG 185 ? ? CZ A ARG 185 ? ? NH2 A ARG 185 ? ? 125.25 120.30 4.95 0.50 N 9 1 O A GLN 187 ? ? C A GLN 187 ? ? N A SER 188 ? ? 133.47 122.70 10.77 1.60 Y 10 1 O A CYS 191 ? ? C A CYS 191 ? ? N A PHE 192 ? ? 132.56 122.70 9.86 1.60 Y 11 1 NE A ARG 201 ? ? CZ A ARG 201 ? ? NH1 A ARG 201 ? ? 123.52 120.30 3.22 0.50 N 12 1 NE A ARG 277 ? ? CZ A ARG 277 ? ? NH1 A ARG 277 ? ? 116.40 120.30 -3.90 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 173 ? ? -29.58 -57.09 2 1 GLN A 178 ? ? -62.07 66.19 3 1 GLU A 183 ? ? -143.51 -55.61 4 1 PRO A 184 ? ? -89.39 -130.18 5 1 ARG A 185 ? ? 29.16 -34.36 6 1 PHE A 214 ? ? 70.87 37.69 7 1 LEU A 259 ? ? -146.21 25.31 8 1 ASN A 270 ? ? 80.33 20.22 9 1 ASN A 285 ? ? 55.64 18.15 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LEU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 182 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 183 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.14 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LEU _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 171 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.18 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A GLU 167 ? ? N A ARG 168 ? ? 1.61 2 1 C A ARG 201 ? ? N A ALA 202 ? ? 1.17 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4BLF _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details 'METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 3BTP _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 3BTP # _em_3d_reconstruction.entry_id 4BLF _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.num_particles 8019 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size 4.32 _em_3d_reconstruction.actual_pixel_size 4.32 _em_3d_reconstruction.resolution 20 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;PARTICLES WERE PRE-SELECTED USING XMIPP, AND RECONSTRUCTION WAS CARRIED OUT USING IHRSR PROGRAM IMPLEMENTED IN THE SPIDER PACKAGE. THIS ATOMIC STRUCTURE WAS FITTED INTO THE CRYOEM ENVELOPE USING FITPDB2EM. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2339. (DEPOSITION ID: 11520). ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 MM TRIS, 500 MM NACL' _em_buffer.pH 8 _em_buffer.details '50 MM TRIS, 500 MM NACL' # _em_entity_assembly.id 1 _em_entity_assembly.name 'CRYOEM RECONSTRUCTION OF THE AGROBACTERIUM T-COMPLEX' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'MICROGRAPHS IN WHICH THON RINGS WERE VISIBLE BEYOND 13 ANGSTROEMS WERE SELECTED.' _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 4BLF _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2008-06-06 _em_imaging.temperature ? _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 3200 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4BLF _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 95, INSTRUMENT- HOMEMADE PLUNGER' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4BLF _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 180 ? A HIS 69 2 1 Y 1 A ASN 181 ? A ASN 70 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.details PHASE-FLIPPING _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GENERIC TVIPS' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 fitPDB2EM ? 'MODEL FITTING' ? ? ? 1 2 Bsoft ? RECONSTRUCTION ? 1 ? ? 3 EMAN ? RECONSTRUCTION ? 1 ? ? 4 IHRSR ? RECONSTRUCTION ? 1 ? ? 5 SPIDER ? RECONSTRUCTION ? 1 ? ? 6 Xmipp ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BTP # _atom_sites.entry_id 4BLF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_