data_4D26 # _entry.id 4D26 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4D26 pdb_00004d26 10.2210/pdb4d26/pdb PDBE EBI-60573 ? ? WWPDB D_1290060573 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4D25 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE BOMBYX MORI VASA HELICASE (E339Q) IN COMPLEX WITH RNA AND AMPPNP' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4D26 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-05-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Spinelli, P.' 1 'Pillai, R.S.' 2 'Kadlec, J.' 3 'Cusack, S.' 4 # _citation.id primary _citation.title 'RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 157 _citation.page_first 1698 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24910301 _citation.pdbx_database_id_DOI 10.1016/J.CELL.2014.05.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xiol, J.' 1 ? primary 'Spinelli, P.' 2 ? primary 'Laussmann, M.A.' 3 ? primary 'Homolka, D.' 4 ? primary 'Yang, Z.' 5 ? primary 'Cora, E.' 6 ? primary 'Coute, Y.' 7 ? primary 'Conn, S.' 8 ? primary 'Kadlec, J.' 9 ? primary 'Sachidanandam, R.' 10 ? primary 'Kaksonen, M.' 11 ? primary 'Cusack, S.' 12 ? primary 'Ephrussi, A.' 13 ? primary 'Pillai, R.S.' 14 ? # _cell.entry_id 4D26 _cell.length_a 52.960 _cell.length_b 77.810 _cell.length_c 107.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D26 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BMVLG PROTEIN' 48129.074 1 ? YES 'HELICASE, RESIDUES 135-564' ? 2 polymer syn "5'-R(*UP*GP*AP*CP*AP*UP)-3'" 1876.173 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 water nat water 18.015 90 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BM VASA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMGVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNA IPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAV AYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDQADCMLDMGFMPSIEKMMLHPTMVETTKRQTL MFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAM LSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGK AVSFYDSDQDLALVADLSKILRQADQSVPDFLKG ; ;GAMGVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNA IPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAV AYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDQADCMLDMGFMPSIEKMMLHPTMVETTKRQTL MFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAM LSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGK AVSFYDSDQDLALVADLSKILRQADQSVPDFLKG ; A ? 2 polyribonucleotide no no UGACAU UGACAU D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 VAL n 1 6 THR n 1 7 TYR n 1 8 VAL n 1 9 PRO n 1 10 PRO n 1 11 GLU n 1 12 PRO n 1 13 THR n 1 14 ASN n 1 15 ASP n 1 16 GLU n 1 17 THR n 1 18 GLU n 1 19 ILE n 1 20 PHE n 1 21 SER n 1 22 SER n 1 23 THR n 1 24 ILE n 1 25 SER n 1 26 SER n 1 27 GLY n 1 28 ILE n 1 29 ASN n 1 30 PHE n 1 31 ASP n 1 32 LYS n 1 33 PHE n 1 34 ASP n 1 35 HIS n 1 36 ILE n 1 37 ALA n 1 38 VAL n 1 39 LYS n 1 40 VAL n 1 41 SER n 1 42 GLY n 1 43 GLU n 1 44 ASN n 1 45 PRO n 1 46 PRO n 1 47 ARG n 1 48 PRO n 1 49 ILE n 1 50 GLU n 1 51 SER n 1 52 PHE n 1 53 GLU n 1 54 THR n 1 55 ALA n 1 56 ASN n 1 57 LEU n 1 58 ARG n 1 59 LYS n 1 60 TYR n 1 61 VAL n 1 62 LEU n 1 63 ASP n 1 64 ASN n 1 65 VAL n 1 66 LEU n 1 67 LYS n 1 68 ALA n 1 69 GLY n 1 70 TYR n 1 71 ARG n 1 72 LYS n 1 73 PRO n 1 74 THR n 1 75 PRO n 1 76 ILE n 1 77 GLN n 1 78 LYS n 1 79 ASN n 1 80 ALA n 1 81 ILE n 1 82 PRO n 1 83 ILE n 1 84 ILE n 1 85 MET n 1 86 SER n 1 87 GLY n 1 88 ARG n 1 89 ASP n 1 90 LEU n 1 91 MET n 1 92 GLY n 1 93 CYS n 1 94 ALA n 1 95 GLN n 1 96 THR n 1 97 GLY n 1 98 SER n 1 99 GLY n 1 100 LYS n 1 101 THR n 1 102 ALA n 1 103 ALA n 1 104 PHE n 1 105 LEU n 1 106 VAL n 1 107 PRO n 1 108 ILE n 1 109 ILE n 1 110 ASN n 1 111 MET n 1 112 LEU n 1 113 LEU n 1 114 GLN n 1 115 ASP n 1 116 PRO n 1 117 LYS n 1 118 ASP n 1 119 LEU n 1 120 ILE n 1 121 SER n 1 122 GLU n 1 123 ASN n 1 124 GLY n 1 125 CYS n 1 126 ALA n 1 127 GLN n 1 128 PRO n 1 129 GLN n 1 130 VAL n 1 131 ILE n 1 132 ILE n 1 133 VAL n 1 134 SER n 1 135 PRO n 1 136 THR n 1 137 ARG n 1 138 GLU n 1 139 LEU n 1 140 THR n 1 141 LEU n 1 142 GLN n 1 143 ILE n 1 144 PHE n 1 145 ASN n 1 146 GLU n 1 147 ALA n 1 148 ARG n 1 149 LYS n 1 150 PHE n 1 151 SER n 1 152 TYR n 1 153 GLY n 1 154 SER n 1 155 VAL n 1 156 LEU n 1 157 LYS n 1 158 VAL n 1 159 ALA n 1 160 VAL n 1 161 ALA n 1 162 TYR n 1 163 GLY n 1 164 GLY n 1 165 THR n 1 166 ALA n 1 167 VAL n 1 168 ARG n 1 169 HIS n 1 170 GLN n 1 171 GLY n 1 172 ASP n 1 173 ASN n 1 174 ILE n 1 175 ALA n 1 176 ARG n 1 177 GLY n 1 178 CYS n 1 179 HIS n 1 180 ILE n 1 181 LEU n 1 182 VAL n 1 183 ALA n 1 184 THR n 1 185 PRO n 1 186 GLY n 1 187 ARG n 1 188 LEU n 1 189 HIS n 1 190 ASP n 1 191 PHE n 1 192 VAL n 1 193 GLU n 1 194 ARG n 1 195 ASN n 1 196 ARG n 1 197 VAL n 1 198 SER n 1 199 PHE n 1 200 GLY n 1 201 SER n 1 202 VAL n 1 203 ARG n 1 204 PHE n 1 205 VAL n 1 206 VAL n 1 207 LEU n 1 208 ASP n 1 209 GLN n 1 210 ALA n 1 211 ASP n 1 212 CYS n 1 213 MET n 1 214 LEU n 1 215 ASP n 1 216 MET n 1 217 GLY n 1 218 PHE n 1 219 MET n 1 220 PRO n 1 221 SER n 1 222 ILE n 1 223 GLU n 1 224 LYS n 1 225 MET n 1 226 MET n 1 227 LEU n 1 228 HIS n 1 229 PRO n 1 230 THR n 1 231 MET n 1 232 VAL n 1 233 GLU n 1 234 THR n 1 235 THR n 1 236 LYS n 1 237 ARG n 1 238 GLN n 1 239 THR n 1 240 LEU n 1 241 MET n 1 242 PHE n 1 243 SER n 1 244 ALA n 1 245 THR n 1 246 PHE n 1 247 PRO n 1 248 GLU n 1 249 ASP n 1 250 ILE n 1 251 GLN n 1 252 HIS n 1 253 LEU n 1 254 ALA n 1 255 GLY n 1 256 ARG n 1 257 PHE n 1 258 LEU n 1 259 ASN n 1 260 ASN n 1 261 TYR n 1 262 LEU n 1 263 PHE n 1 264 VAL n 1 265 ALA n 1 266 VAL n 1 267 GLY n 1 268 ILE n 1 269 VAL n 1 270 GLY n 1 271 GLY n 1 272 ALA n 1 273 SER n 1 274 THR n 1 275 ASP n 1 276 VAL n 1 277 GLU n 1 278 GLN n 1 279 ILE n 1 280 PHE n 1 281 ILE n 1 282 GLU n 1 283 VAL n 1 284 THR n 1 285 LYS n 1 286 TYR n 1 287 GLU n 1 288 LYS n 1 289 ARG n 1 290 ASN n 1 291 SER n 1 292 LEU n 1 293 LYS n 1 294 GLN n 1 295 LEU n 1 296 ILE n 1 297 GLU n 1 298 GLU n 1 299 ASN n 1 300 ASP n 1 301 GLY n 1 302 LYS n 1 303 ARG n 1 304 ILE n 1 305 LEU n 1 306 VAL n 1 307 PHE n 1 308 VAL n 1 309 GLU n 1 310 THR n 1 311 LYS n 1 312 ARG n 1 313 ASN n 1 314 ALA n 1 315 ASP n 1 316 PHE n 1 317 ILE n 1 318 ALA n 1 319 ALA n 1 320 MET n 1 321 LEU n 1 322 SER n 1 323 GLU n 1 324 GLN n 1 325 GLN n 1 326 LEU n 1 327 LEU n 1 328 THR n 1 329 SER n 1 330 SER n 1 331 ILE n 1 332 HIS n 1 333 GLY n 1 334 ASP n 1 335 ARG n 1 336 MET n 1 337 GLN n 1 338 ARG n 1 339 GLU n 1 340 ARG n 1 341 GLU n 1 342 GLU n 1 343 ALA n 1 344 LEU n 1 345 GLN n 1 346 ASN n 1 347 PHE n 1 348 LYS n 1 349 SER n 1 350 GLY n 1 351 LYS n 1 352 HIS n 1 353 CYS n 1 354 ILE n 1 355 LEU n 1 356 VAL n 1 357 ALA n 1 358 THR n 1 359 ALA n 1 360 VAL n 1 361 ALA n 1 362 ALA n 1 363 ARG n 1 364 GLY n 1 365 LEU n 1 366 ASP n 1 367 ILE n 1 368 LYS n 1 369 ASN n 1 370 VAL n 1 371 ASP n 1 372 ILE n 1 373 VAL n 1 374 VAL n 1 375 ASN n 1 376 TYR n 1 377 ASP n 1 378 LEU n 1 379 PRO n 1 380 LYS n 1 381 SER n 1 382 ILE n 1 383 ASP n 1 384 GLU n 1 385 TYR n 1 386 VAL n 1 387 HIS n 1 388 ARG n 1 389 ILE n 1 390 GLY n 1 391 ARG n 1 392 THR n 1 393 GLY n 1 394 ARG n 1 395 VAL n 1 396 GLY n 1 397 ASN n 1 398 ARG n 1 399 GLY n 1 400 LYS n 1 401 ALA n 1 402 VAL n 1 403 SER n 1 404 PHE n 1 405 TYR n 1 406 ASP n 1 407 SER n 1 408 ASP n 1 409 GLN n 1 410 ASP n 1 411 LEU n 1 412 ALA n 1 413 LEU n 1 414 VAL n 1 415 ALA n 1 416 ASP n 1 417 LEU n 1 418 SER n 1 419 LYS n 1 420 ILE n 1 421 LEU n 1 422 ARG n 1 423 GLN n 1 424 ALA n 1 425 ASP n 1 426 GLN n 1 427 SER n 1 428 VAL n 1 429 PRO n 1 430 ASP n 1 431 PHE n 1 432 LEU n 1 433 LYS n 1 434 GLY n 2 1 U n 2 2 G n 2 3 A n 2 4 C n 2 5 A n 2 6 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'DOMESTIC SILKWORM' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BOMBYX MORI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7091 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line 'BMN4 OVARIAN CELL CULTURE' _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant STAR _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PETM11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'BOMBYX MORI' _pdbx_entity_src_syn.organism_common_name 'DOMESTIC SILKWORM' _pdbx_entity_src_syn.ncbi_taxonomy_id 7091 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP O01378_BOMMO 1 ? ? O01378 ? 2 PDB 4D26 2 ? ? 4D26 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4D26 A 5 ? 434 ? O01378 135 ? 564 ? 135 564 2 2 4D26 D 1 ? 6 ? 4D26 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4D26 GLY A 1 ? UNP O01378 ? ? 'expression tag' 131 1 1 4D26 ALA A 2 ? UNP O01378 ? ? 'expression tag' 132 2 1 4D26 MET A 3 ? UNP O01378 ? ? 'expression tag' 133 3 1 4D26 GLY A 4 ? UNP O01378 ? ? 'expression tag' 134 4 1 4D26 GLN A 209 ? UNP O01378 GLU 339 'engineered mutation' 339 5 1 4D26 CYS A 212 ? UNP O01378 ARG 342 'engineered mutation' 342 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4D26 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 45 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M HEPES, PH 7.5, 25% PEG3350' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-06-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.939 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.939 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4D26 _reflns.observed_criterion_sigma_I 2.4 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100.00 _reflns.d_resolution_high 2.10 _reflns.number_obs 26616 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.13 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.30 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 95.8 _reflns_shell.Rmerge_I_obs 0.67 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4D26 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24708 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.78 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.22872 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22460 _refine.ls_R_factor_R_free 0.27707 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.0 _refine.ls_number_reflns_R_free 1854 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.901 _refine.B_iso_mean 30.049 _refine.aniso_B[1][1] -5.16 _refine.aniso_B[2][2] 1.48 _refine.aniso_B[3][3] 3.68 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED' _refine.pdbx_starting_model 'PDB ENTRY 2DB3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.060 _refine.pdbx_overall_ESU_R_Free 0.048 _refine.overall_SU_ML 0.134 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.952 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3354 _refine_hist.pdbx_number_atoms_nucleic_acid 128 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 3605 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 43.78 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.019 ? 3595 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 3410 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.196 1.947 ? 4897 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.744 3.000 ? 7849 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.733 5.000 ? 433 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.626 24.103 ? 156 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.462 15.000 ? 611 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.610 15.000 ? 26 'X-RAY DIFFRACTION' ? r_chiral_restr 0.062 0.200 ? 558 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 3967 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 811 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.552 1.570 ? 1723 'X-RAY DIFFRACTION' ? r_mcbond_other 0.552 1.569 ? 1722 'X-RAY DIFFRACTION' ? r_mcangle_it 0.959 2.353 ? 2153 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.583 1.623 ? 1872 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.number_reflns_R_work 1805 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.360 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 106 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4D26 _struct.title 'Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA,ADP and Pi' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4D26 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, PIRNA, AMPLIFIER COMPLEX, TRANSPOSON' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 15 ? SER A 21 ? ASP A 145 SER A 151 1 ? 7 HELX_P HELX_P2 2 ASN A 29 ? ILE A 36 ? ASN A 159 ILE A 166 5 ? 8 HELX_P HELX_P3 3 SER A 51 ? ALA A 55 ? SER A 181 ALA A 185 5 ? 5 HELX_P HELX_P4 4 ARG A 58 ? ALA A 68 ? ARG A 188 ALA A 198 1 ? 11 HELX_P HELX_P5 5 THR A 74 ? SER A 86 ? THR A 204 SER A 216 1 ? 13 HELX_P HELX_P6 6 GLY A 99 ? ASP A 115 ? GLY A 229 ASP A 245 1 ? 17 HELX_P HELX_P7 7 THR A 136 ? SER A 151 ? THR A 266 SER A 281 1 ? 16 HELX_P HELX_P8 8 ALA A 166 ? ALA A 175 ? ALA A 296 ALA A 305 1 ? 10 HELX_P HELX_P9 9 THR A 184 ? ARG A 194 ? THR A 314 ARG A 324 1 ? 11 HELX_P HELX_P10 10 GLN A 209 ? LEU A 214 ? GLN A 339 LEU A 344 1 ? 6 HELX_P HELX_P11 11 PHE A 218 ? LEU A 227 ? PHE A 348 LEU A 357 1 ? 10 HELX_P HELX_P12 12 GLU A 233 ? ARG A 237 ? GLU A 363 ARG A 367 5 ? 5 HELX_P HELX_P13 13 PRO A 247 ? GLY A 255 ? PRO A 377 GLY A 385 1 ? 9 HELX_P HELX_P14 14 GLU A 287 ? GLU A 298 ? GLU A 417 GLU A 428 1 ? 12 HELX_P HELX_P15 15 THR A 310 ? GLN A 324 ? THR A 440 GLN A 454 1 ? 15 HELX_P HELX_P16 16 MET A 336 ? GLY A 350 ? MET A 466 GLY A 480 1 ? 15 HELX_P HELX_P17 17 ALA A 359 ? ALA A 362 ? ALA A 489 ALA A 492 5 ? 4 HELX_P HELX_P18 18 SER A 381 ? GLY A 390 ? SER A 511 GLY A 520 1 ? 10 HELX_P HELX_P19 19 ASP A 406 ? LEU A 411 ? ASP A 536 LEU A 541 1 ? 6 HELX_P HELX_P20 20 LEU A 413 ? ALA A 424 ? LEU A 543 ALA A 554 1 ? 12 HELX_P HELX_P21 21 PRO A 429 ? LYS A 433 ? PRO A 559 LYS A 563 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C ADP . O2B ? ? ? 1_555 E MG . MG ? ? A ADP 1564 A MG 1566 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc2 metalc ? ? D PO4 . O2 ? ? ? 1_555 E MG . MG ? ? A PO4 1565 A MG 1566 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1566 A HOH 2021 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1566 A HOH 2038 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1566 A HOH 2039 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1566 A HOH 2070 1_555 ? ? ? ? ? ? ? 2.273 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 8 ? AB ? 2 ? AC ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? parallel AA 7 8 ? parallel AB 1 2 ? anti-parallel AC 1 2 ? parallel AC 2 3 ? parallel AC 3 4 ? parallel AC 4 5 ? parallel AC 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 38 ? SER A 41 ? VAL A 168 SER A 171 AA 2 LEU A 262 ? VAL A 266 ? LEU A 392 VAL A 396 AA 3 LEU A 90 ? CYS A 93 ? LEU A 220 CYS A 223 AA 4 GLN A 238 ? SER A 243 ? GLN A 368 SER A 373 AA 5 PHE A 204 ? ASP A 208 ? PHE A 334 ASP A 338 AA 6 VAL A 130 ? VAL A 133 ? VAL A 260 VAL A 263 AA 7 ILE A 180 ? ALA A 183 ? ILE A 310 ALA A 313 AA 8 VAL A 158 ? ALA A 161 ? VAL A 288 ALA A 291 AB 1 SER A 121 ? GLU A 122 ? SER A 251 GLU A 252 AB 2 CYS A 125 ? ALA A 126 ? CYS A 255 ALA A 256 AC 1 VAL A 276 ? GLU A 282 ? VAL A 406 GLU A 412 AC 2 GLY A 399 ? TYR A 405 ? GLY A 529 TYR A 535 AC 3 ILE A 372 ? ASN A 375 ? ILE A 502 ASN A 505 AC 4 ILE A 304 ? PHE A 307 ? ILE A 434 PHE A 437 AC 5 ILE A 354 ? ALA A 357 ? ILE A 484 ALA A 487 AC 6 THR A 328 ? ILE A 331 ? THR A 458 ILE A 461 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 41 ? N SER A 171 O PHE A 263 ? O PHE A 393 AA 2 3 N VAL A 264 ? N VAL A 394 O MET A 91 ? O MET A 221 AA 3 4 N LEU A 90 ? N LEU A 220 O THR A 239 ? O THR A 369 AA 4 5 N LEU A 240 ? N LEU A 370 O VAL A 205 ? O VAL A 335 AA 5 6 N VAL A 206 ? N VAL A 336 O ILE A 131 ? O ILE A 261 AA 6 7 N ILE A 132 ? N ILE A 262 O LEU A 181 ? O LEU A 311 AA 7 8 N VAL A 182 ? N VAL A 312 O ALA A 159 ? O ALA A 289 AB 1 2 N GLU A 122 ? N GLU A 252 O CYS A 125 ? O CYS A 255 AC 1 2 N GLU A 277 ? N GLU A 407 O GLY A 399 ? O GLY A 529 AC 2 3 N VAL A 402 ? N VAL A 532 O VAL A 373 ? O VAL A 503 AC 3 4 N VAL A 374 ? N VAL A 504 O LEU A 305 ? O LEU A 435 AC 4 5 N VAL A 306 ? N VAL A 436 O LEU A 355 ? O LEU A 485 AC 5 6 N VAL A 356 ? N VAL A 486 O SER A 329 ? O SER A 459 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 1564 ? 22 'BINDING SITE FOR RESIDUE ADP A 1564' AC2 Software A PO4 1565 ? 13 'BINDING SITE FOR RESIDUE PO4 A 1565' AC3 Software A MG 1566 ? 7 'BINDING SITE FOR RESIDUE MG A 1566' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 THR A 23 ? THR A 153 . ? 1_555 ? 2 AC1 22 ILE A 24 ? ILE A 154 . ? 1_555 ? 3 AC1 22 PHE A 30 ? PHE A 160 . ? 1_555 ? 4 AC1 22 PHE A 52 ? PHE A 182 . ? 1_555 ? 5 AC1 22 TYR A 70 ? TYR A 200 . ? 1_555 ? 6 AC1 22 LYS A 72 ? LYS A 202 . ? 1_555 ? 7 AC1 22 GLN A 77 ? GLN A 207 . ? 1_555 ? 8 AC1 22 GLN A 95 ? GLN A 225 . ? 1_555 ? 9 AC1 22 GLY A 97 ? GLY A 227 . ? 1_555 ? 10 AC1 22 SER A 98 ? SER A 228 . ? 1_555 ? 11 AC1 22 GLY A 99 ? GLY A 229 . ? 1_555 ? 12 AC1 22 LYS A 100 ? LYS A 230 . ? 1_555 ? 13 AC1 22 THR A 101 ? THR A 231 . ? 1_555 ? 14 AC1 22 ASP A 366 ? ASP A 496 . ? 1_555 ? 15 AC1 22 ARG A 394 ? ARG A 524 . ? 1_555 ? 16 AC1 22 VAL A 395 ? VAL A 525 . ? 1_555 ? 17 AC1 22 PO4 D . ? PO4 A 1565 . ? 1_555 ? 18 AC1 22 MG E . ? MG A 1566 . ? 1_555 ? 19 AC1 22 HOH F . ? HOH A 2005 . ? 1_555 ? 20 AC1 22 HOH F . ? HOH A 2020 . ? 1_555 ? 21 AC1 22 HOH F . ? HOH A 2021 . ? 1_555 ? 22 AC1 22 HOH F . ? HOH A 2070 . ? 1_555 ? 23 AC2 13 THR A 96 ? THR A 226 . ? 1_555 ? 24 AC2 13 LYS A 100 ? LYS A 230 . ? 1_555 ? 25 AC2 13 GLN A 209 ? GLN A 339 . ? 1_555 ? 26 AC2 13 GLY A 364 ? GLY A 494 . ? 1_555 ? 27 AC2 13 HIS A 387 ? HIS A 517 . ? 1_555 ? 28 AC2 13 ARG A 391 ? ARG A 521 . ? 1_555 ? 29 AC2 13 ARG A 394 ? ARG A 524 . ? 1_555 ? 30 AC2 13 ADP C . ? ADP A 1564 . ? 1_555 ? 31 AC2 13 MG E . ? MG A 1566 . ? 1_555 ? 32 AC2 13 HOH F . ? HOH A 2038 . ? 1_555 ? 33 AC2 13 HOH F . ? HOH A 2039 . ? 1_555 ? 34 AC2 13 HOH F . ? HOH A 2040 . ? 1_555 ? 35 AC2 13 HOH F . ? HOH A 2070 . ? 1_555 ? 36 AC3 7 GLN A 209 ? GLN A 339 . ? 1_555 ? 37 AC3 7 ADP C . ? ADP A 1564 . ? 1_555 ? 38 AC3 7 PO4 D . ? PO4 A 1565 . ? 1_555 ? 39 AC3 7 HOH F . ? HOH A 2021 . ? 1_555 ? 40 AC3 7 HOH F . ? HOH A 2038 . ? 1_555 ? 41 AC3 7 HOH F . ? HOH A 2039 . ? 1_555 ? 42 AC3 7 HOH F . ? HOH A 2070 . ? 1_555 ? # _database_PDB_matrix.entry_id 4D26 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4D26 _atom_sites.fract_transf_matrix[1][1] 0.018882 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012852 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009320 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 131 ? ? ? A . n A 1 2 ALA 2 132 ? ? ? A . n A 1 3 MET 3 133 ? ? ? A . n A 1 4 GLY 4 134 134 GLY GLY A . n A 1 5 VAL 5 135 135 VAL VAL A . n A 1 6 THR 6 136 136 THR THR A . n A 1 7 TYR 7 137 137 TYR TYR A . n A 1 8 VAL 8 138 138 VAL VAL A . n A 1 9 PRO 9 139 139 PRO PRO A . n A 1 10 PRO 10 140 140 PRO PRO A . n A 1 11 GLU 11 141 141 GLU GLU A . n A 1 12 PRO 12 142 142 PRO PRO A . n A 1 13 THR 13 143 143 THR THR A . n A 1 14 ASN 14 144 144 ASN ASN A . n A 1 15 ASP 15 145 145 ASP ASP A . n A 1 16 GLU 16 146 146 GLU GLU A . n A 1 17 THR 17 147 147 THR THR A . n A 1 18 GLU 18 148 148 GLU GLU A . n A 1 19 ILE 19 149 149 ILE ILE A . n A 1 20 PHE 20 150 150 PHE PHE A . n A 1 21 SER 21 151 151 SER SER A . n A 1 22 SER 22 152 152 SER SER A . n A 1 23 THR 23 153 153 THR THR A . n A 1 24 ILE 24 154 154 ILE ILE A . n A 1 25 SER 25 155 155 SER SER A . n A 1 26 SER 26 156 156 SER SER A . n A 1 27 GLY 27 157 157 GLY GLY A . n A 1 28 ILE 28 158 158 ILE ILE A . n A 1 29 ASN 29 159 159 ASN ASN A . n A 1 30 PHE 30 160 160 PHE PHE A . n A 1 31 ASP 31 161 161 ASP ASP A . n A 1 32 LYS 32 162 162 LYS LYS A . n A 1 33 PHE 33 163 163 PHE PHE A . n A 1 34 ASP 34 164 164 ASP ASP A . n A 1 35 HIS 35 165 165 HIS HIS A . n A 1 36 ILE 36 166 166 ILE ILE A . n A 1 37 ALA 37 167 167 ALA ALA A . n A 1 38 VAL 38 168 168 VAL VAL A . n A 1 39 LYS 39 169 169 LYS LYS A . n A 1 40 VAL 40 170 170 VAL VAL A . n A 1 41 SER 41 171 171 SER SER A . n A 1 42 GLY 42 172 172 GLY GLY A . n A 1 43 GLU 43 173 173 GLU GLU A . n A 1 44 ASN 44 174 174 ASN ASN A . n A 1 45 PRO 45 175 175 PRO PRO A . n A 1 46 PRO 46 176 176 PRO PRO A . n A 1 47 ARG 47 177 177 ARG ARG A . n A 1 48 PRO 48 178 178 PRO PRO A . n A 1 49 ILE 49 179 179 ILE ILE A . n A 1 50 GLU 50 180 180 GLU GLU A . n A 1 51 SER 51 181 181 SER SER A . n A 1 52 PHE 52 182 182 PHE PHE A . n A 1 53 GLU 53 183 183 GLU GLU A . n A 1 54 THR 54 184 184 THR THR A . n A 1 55 ALA 55 185 185 ALA ALA A . n A 1 56 ASN 56 186 186 ASN ASN A . n A 1 57 LEU 57 187 187 LEU LEU A . n A 1 58 ARG 58 188 188 ARG ARG A . n A 1 59 LYS 59 189 189 LYS LYS A . n A 1 60 TYR 60 190 190 TYR TYR A . n A 1 61 VAL 61 191 191 VAL VAL A . n A 1 62 LEU 62 192 192 LEU LEU A . n A 1 63 ASP 63 193 193 ASP ASP A . n A 1 64 ASN 64 194 194 ASN ASN A . n A 1 65 VAL 65 195 195 VAL VAL A . n A 1 66 LEU 66 196 196 LEU LEU A . n A 1 67 LYS 67 197 197 LYS LYS A . n A 1 68 ALA 68 198 198 ALA ALA A . n A 1 69 GLY 69 199 199 GLY GLY A . n A 1 70 TYR 70 200 200 TYR TYR A . n A 1 71 ARG 71 201 201 ARG ARG A . n A 1 72 LYS 72 202 202 LYS LYS A . n A 1 73 PRO 73 203 203 PRO PRO A . n A 1 74 THR 74 204 204 THR THR A . n A 1 75 PRO 75 205 205 PRO PRO A . n A 1 76 ILE 76 206 206 ILE ILE A . n A 1 77 GLN 77 207 207 GLN GLN A . n A 1 78 LYS 78 208 208 LYS LYS A . n A 1 79 ASN 79 209 209 ASN ASN A . n A 1 80 ALA 80 210 210 ALA ALA A . n A 1 81 ILE 81 211 211 ILE ILE A . n A 1 82 PRO 82 212 212 PRO PRO A . n A 1 83 ILE 83 213 213 ILE ILE A . n A 1 84 ILE 84 214 214 ILE ILE A . n A 1 85 MET 85 215 215 MET MET A . n A 1 86 SER 86 216 216 SER SER A . n A 1 87 GLY 87 217 217 GLY GLY A . n A 1 88 ARG 88 218 218 ARG ARG A . n A 1 89 ASP 89 219 219 ASP ASP A . n A 1 90 LEU 90 220 220 LEU LEU A . n A 1 91 MET 91 221 221 MET MET A . n A 1 92 GLY 92 222 222 GLY GLY A . n A 1 93 CYS 93 223 223 CYS CYS A . n A 1 94 ALA 94 224 224 ALA ALA A . n A 1 95 GLN 95 225 225 GLN GLN A . n A 1 96 THR 96 226 226 THR THR A . n A 1 97 GLY 97 227 227 GLY GLY A . n A 1 98 SER 98 228 228 SER SER A . n A 1 99 GLY 99 229 229 GLY GLY A . n A 1 100 LYS 100 230 230 LYS LYS A . n A 1 101 THR 101 231 231 THR THR A . n A 1 102 ALA 102 232 232 ALA ALA A . n A 1 103 ALA 103 233 233 ALA ALA A . n A 1 104 PHE 104 234 234 PHE PHE A . n A 1 105 LEU 105 235 235 LEU LEU A . n A 1 106 VAL 106 236 236 VAL VAL A . n A 1 107 PRO 107 237 237 PRO PRO A . n A 1 108 ILE 108 238 238 ILE ILE A . n A 1 109 ILE 109 239 239 ILE ILE A . n A 1 110 ASN 110 240 240 ASN ASN A . n A 1 111 MET 111 241 241 MET MET A . n A 1 112 LEU 112 242 242 LEU LEU A . n A 1 113 LEU 113 243 243 LEU LEU A . n A 1 114 GLN 114 244 244 GLN GLN A . n A 1 115 ASP 115 245 245 ASP ASP A . n A 1 116 PRO 116 246 246 PRO PRO A . n A 1 117 LYS 117 247 247 LYS LYS A . n A 1 118 ASP 118 248 248 ASP ASP A . n A 1 119 LEU 119 249 249 LEU LEU A . n A 1 120 ILE 120 250 250 ILE ILE A . n A 1 121 SER 121 251 251 SER SER A . n A 1 122 GLU 122 252 252 GLU GLU A . n A 1 123 ASN 123 253 253 ASN ASN A . n A 1 124 GLY 124 254 254 GLY GLY A . n A 1 125 CYS 125 255 255 CYS CYS A . n A 1 126 ALA 126 256 256 ALA ALA A . n A 1 127 GLN 127 257 257 GLN GLN A . n A 1 128 PRO 128 258 258 PRO PRO A . n A 1 129 GLN 129 259 259 GLN GLN A . n A 1 130 VAL 130 260 260 VAL VAL A . n A 1 131 ILE 131 261 261 ILE ILE A . n A 1 132 ILE 132 262 262 ILE ILE A . n A 1 133 VAL 133 263 263 VAL VAL A . n A 1 134 SER 134 264 264 SER SER A . n A 1 135 PRO 135 265 265 PRO PRO A . n A 1 136 THR 136 266 266 THR THR A . n A 1 137 ARG 137 267 267 ARG ARG A . n A 1 138 GLU 138 268 268 GLU GLU A . n A 1 139 LEU 139 269 269 LEU LEU A . n A 1 140 THR 140 270 270 THR THR A . n A 1 141 LEU 141 271 271 LEU LEU A . n A 1 142 GLN 142 272 272 GLN GLN A . n A 1 143 ILE 143 273 273 ILE ILE A . n A 1 144 PHE 144 274 274 PHE PHE A . n A 1 145 ASN 145 275 275 ASN ASN A . n A 1 146 GLU 146 276 276 GLU GLU A . n A 1 147 ALA 147 277 277 ALA ALA A . n A 1 148 ARG 148 278 278 ARG ARG A . n A 1 149 LYS 149 279 279 LYS LYS A . n A 1 150 PHE 150 280 280 PHE PHE A . n A 1 151 SER 151 281 281 SER SER A . n A 1 152 TYR 152 282 282 TYR TYR A . n A 1 153 GLY 153 283 283 GLY GLY A . n A 1 154 SER 154 284 284 SER SER A . n A 1 155 VAL 155 285 285 VAL VAL A . n A 1 156 LEU 156 286 286 LEU LEU A . n A 1 157 LYS 157 287 287 LYS LYS A . n A 1 158 VAL 158 288 288 VAL VAL A . n A 1 159 ALA 159 289 289 ALA ALA A . n A 1 160 VAL 160 290 290 VAL VAL A . n A 1 161 ALA 161 291 291 ALA ALA A . n A 1 162 TYR 162 292 292 TYR TYR A . n A 1 163 GLY 163 293 293 GLY GLY A . n A 1 164 GLY 164 294 294 GLY GLY A . n A 1 165 THR 165 295 295 THR THR A . n A 1 166 ALA 166 296 296 ALA ALA A . n A 1 167 VAL 167 297 297 VAL VAL A . n A 1 168 ARG 168 298 298 ARG ARG A . n A 1 169 HIS 169 299 299 HIS HIS A . n A 1 170 GLN 170 300 300 GLN GLN A . n A 1 171 GLY 171 301 301 GLY GLY A . n A 1 172 ASP 172 302 302 ASP ASP A . n A 1 173 ASN 173 303 303 ASN ASN A . n A 1 174 ILE 174 304 304 ILE ILE A . n A 1 175 ALA 175 305 305 ALA ALA A . n A 1 176 ARG 176 306 306 ARG ARG A . n A 1 177 GLY 177 307 307 GLY GLY A . n A 1 178 CYS 178 308 308 CYS CYS A . n A 1 179 HIS 179 309 309 HIS HIS A . n A 1 180 ILE 180 310 310 ILE ILE A . n A 1 181 LEU 181 311 311 LEU LEU A . n A 1 182 VAL 182 312 312 VAL VAL A . n A 1 183 ALA 183 313 313 ALA ALA A . n A 1 184 THR 184 314 314 THR THR A . n A 1 185 PRO 185 315 315 PRO PRO A . n A 1 186 GLY 186 316 316 GLY GLY A . n A 1 187 ARG 187 317 317 ARG ARG A . n A 1 188 LEU 188 318 318 LEU LEU A . n A 1 189 HIS 189 319 319 HIS HIS A . n A 1 190 ASP 190 320 320 ASP ASP A . n A 1 191 PHE 191 321 321 PHE PHE A . n A 1 192 VAL 192 322 322 VAL VAL A . n A 1 193 GLU 193 323 323 GLU GLU A . n A 1 194 ARG 194 324 324 ARG ARG A . n A 1 195 ASN 195 325 325 ASN ASN A . n A 1 196 ARG 196 326 326 ARG ARG A . n A 1 197 VAL 197 327 327 VAL VAL A . n A 1 198 SER 198 328 328 SER SER A . n A 1 199 PHE 199 329 329 PHE PHE A . n A 1 200 GLY 200 330 330 GLY GLY A . n A 1 201 SER 201 331 331 SER SER A . n A 1 202 VAL 202 332 332 VAL VAL A . n A 1 203 ARG 203 333 333 ARG ARG A . n A 1 204 PHE 204 334 334 PHE PHE A . n A 1 205 VAL 205 335 335 VAL VAL A . n A 1 206 VAL 206 336 336 VAL VAL A . n A 1 207 LEU 207 337 337 LEU LEU A . n A 1 208 ASP 208 338 338 ASP ASP A . n A 1 209 GLN 209 339 339 GLN GLN A . n A 1 210 ALA 210 340 340 ALA ALA A . n A 1 211 ASP 211 341 341 ASP ASP A . n A 1 212 CYS 212 342 342 CYS CYS A . n A 1 213 MET 213 343 343 MET MET A . n A 1 214 LEU 214 344 344 LEU LEU A . n A 1 215 ASP 215 345 345 ASP ASP A . n A 1 216 MET 216 346 346 MET MET A . n A 1 217 GLY 217 347 347 GLY GLY A . n A 1 218 PHE 218 348 348 PHE PHE A . n A 1 219 MET 219 349 349 MET MET A . n A 1 220 PRO 220 350 350 PRO PRO A . n A 1 221 SER 221 351 351 SER SER A . n A 1 222 ILE 222 352 352 ILE ILE A . n A 1 223 GLU 223 353 353 GLU GLU A . n A 1 224 LYS 224 354 354 LYS LYS A . n A 1 225 MET 225 355 355 MET MET A . n A 1 226 MET 226 356 356 MET MET A . n A 1 227 LEU 227 357 357 LEU LEU A . n A 1 228 HIS 228 358 358 HIS HIS A . n A 1 229 PRO 229 359 359 PRO PRO A . n A 1 230 THR 230 360 360 THR THR A . n A 1 231 MET 231 361 361 MET MET A . n A 1 232 VAL 232 362 362 VAL VAL A . n A 1 233 GLU 233 363 363 GLU GLU A . n A 1 234 THR 234 364 364 THR THR A . n A 1 235 THR 235 365 365 THR THR A . n A 1 236 LYS 236 366 366 LYS LYS A . n A 1 237 ARG 237 367 367 ARG ARG A . n A 1 238 GLN 238 368 368 GLN GLN A . n A 1 239 THR 239 369 369 THR THR A . n A 1 240 LEU 240 370 370 LEU LEU A . n A 1 241 MET 241 371 371 MET MET A . n A 1 242 PHE 242 372 372 PHE PHE A . n A 1 243 SER 243 373 373 SER SER A . n A 1 244 ALA 244 374 374 ALA ALA A . n A 1 245 THR 245 375 375 THR THR A . n A 1 246 PHE 246 376 376 PHE PHE A . n A 1 247 PRO 247 377 377 PRO PRO A . n A 1 248 GLU 248 378 378 GLU GLU A . n A 1 249 ASP 249 379 379 ASP ASP A . n A 1 250 ILE 250 380 380 ILE ILE A . n A 1 251 GLN 251 381 381 GLN GLN A . n A 1 252 HIS 252 382 382 HIS HIS A . n A 1 253 LEU 253 383 383 LEU LEU A . n A 1 254 ALA 254 384 384 ALA ALA A . n A 1 255 GLY 255 385 385 GLY GLY A . n A 1 256 ARG 256 386 386 ARG ARG A . n A 1 257 PHE 257 387 387 PHE PHE A . n A 1 258 LEU 258 388 388 LEU LEU A . n A 1 259 ASN 259 389 389 ASN ASN A . n A 1 260 ASN 260 390 390 ASN ASN A . n A 1 261 TYR 261 391 391 TYR TYR A . n A 1 262 LEU 262 392 392 LEU LEU A . n A 1 263 PHE 263 393 393 PHE PHE A . n A 1 264 VAL 264 394 394 VAL VAL A . n A 1 265 ALA 265 395 395 ALA ALA A . n A 1 266 VAL 266 396 396 VAL VAL A . n A 1 267 GLY 267 397 397 GLY GLY A . n A 1 268 ILE 268 398 398 ILE ILE A . n A 1 269 VAL 269 399 399 VAL VAL A . n A 1 270 GLY 270 400 400 GLY GLY A . n A 1 271 GLY 271 401 401 GLY GLY A . n A 1 272 ALA 272 402 402 ALA ALA A . n A 1 273 SER 273 403 403 SER SER A . n A 1 274 THR 274 404 404 THR THR A . n A 1 275 ASP 275 405 405 ASP ASP A . n A 1 276 VAL 276 406 406 VAL VAL A . n A 1 277 GLU 277 407 407 GLU GLU A . n A 1 278 GLN 278 408 408 GLN GLN A . n A 1 279 ILE 279 409 409 ILE ILE A . n A 1 280 PHE 280 410 410 PHE PHE A . n A 1 281 ILE 281 411 411 ILE ILE A . n A 1 282 GLU 282 412 412 GLU GLU A . n A 1 283 VAL 283 413 413 VAL VAL A . n A 1 284 THR 284 414 414 THR THR A . n A 1 285 LYS 285 415 415 LYS LYS A . n A 1 286 TYR 286 416 416 TYR TYR A . n A 1 287 GLU 287 417 417 GLU GLU A . n A 1 288 LYS 288 418 418 LYS LYS A . n A 1 289 ARG 289 419 419 ARG ARG A . n A 1 290 ASN 290 420 420 ASN ASN A . n A 1 291 SER 291 421 421 SER SER A . n A 1 292 LEU 292 422 422 LEU LEU A . n A 1 293 LYS 293 423 423 LYS LYS A . n A 1 294 GLN 294 424 424 GLN GLN A . n A 1 295 LEU 295 425 425 LEU LEU A . n A 1 296 ILE 296 426 426 ILE ILE A . n A 1 297 GLU 297 427 427 GLU GLU A . n A 1 298 GLU 298 428 428 GLU GLU A . n A 1 299 ASN 299 429 429 ASN ASN A . n A 1 300 ASP 300 430 430 ASP ASP A . n A 1 301 GLY 301 431 431 GLY GLY A . n A 1 302 LYS 302 432 432 LYS LYS A . n A 1 303 ARG 303 433 433 ARG ARG A . n A 1 304 ILE 304 434 434 ILE ILE A . n A 1 305 LEU 305 435 435 LEU LEU A . n A 1 306 VAL 306 436 436 VAL VAL A . n A 1 307 PHE 307 437 437 PHE PHE A . n A 1 308 VAL 308 438 438 VAL VAL A . n A 1 309 GLU 309 439 439 GLU GLU A . n A 1 310 THR 310 440 440 THR THR A . n A 1 311 LYS 311 441 441 LYS LYS A . n A 1 312 ARG 312 442 442 ARG ARG A . n A 1 313 ASN 313 443 443 ASN ASN A . n A 1 314 ALA 314 444 444 ALA ALA A . n A 1 315 ASP 315 445 445 ASP ASP A . n A 1 316 PHE 316 446 446 PHE PHE A . n A 1 317 ILE 317 447 447 ILE ILE A . n A 1 318 ALA 318 448 448 ALA ALA A . n A 1 319 ALA 319 449 449 ALA ALA A . n A 1 320 MET 320 450 450 MET MET A . n A 1 321 LEU 321 451 451 LEU LEU A . n A 1 322 SER 322 452 452 SER SER A . n A 1 323 GLU 323 453 453 GLU GLU A . n A 1 324 GLN 324 454 454 GLN GLN A . n A 1 325 GLN 325 455 455 GLN GLN A . n A 1 326 LEU 326 456 456 LEU LEU A . n A 1 327 LEU 327 457 457 LEU LEU A . n A 1 328 THR 328 458 458 THR THR A . n A 1 329 SER 329 459 459 SER SER A . n A 1 330 SER 330 460 460 SER SER A . n A 1 331 ILE 331 461 461 ILE ILE A . n A 1 332 HIS 332 462 462 HIS HIS A . n A 1 333 GLY 333 463 463 GLY GLY A . n A 1 334 ASP 334 464 464 ASP ASP A . n A 1 335 ARG 335 465 465 ARG ARG A . n A 1 336 MET 336 466 466 MET MET A . n A 1 337 GLN 337 467 467 GLN GLN A . n A 1 338 ARG 338 468 468 ARG ARG A . n A 1 339 GLU 339 469 469 GLU GLU A . n A 1 340 ARG 340 470 470 ARG ARG A . n A 1 341 GLU 341 471 471 GLU GLU A . n A 1 342 GLU 342 472 472 GLU GLU A . n A 1 343 ALA 343 473 473 ALA ALA A . n A 1 344 LEU 344 474 474 LEU LEU A . n A 1 345 GLN 345 475 475 GLN GLN A . n A 1 346 ASN 346 476 476 ASN ASN A . n A 1 347 PHE 347 477 477 PHE PHE A . n A 1 348 LYS 348 478 478 LYS LYS A . n A 1 349 SER 349 479 479 SER SER A . n A 1 350 GLY 350 480 480 GLY GLY A . n A 1 351 LYS 351 481 481 LYS LYS A . n A 1 352 HIS 352 482 482 HIS HIS A . n A 1 353 CYS 353 483 483 CYS CYS A . n A 1 354 ILE 354 484 484 ILE ILE A . n A 1 355 LEU 355 485 485 LEU LEU A . n A 1 356 VAL 356 486 486 VAL VAL A . n A 1 357 ALA 357 487 487 ALA ALA A . n A 1 358 THR 358 488 488 THR THR A . n A 1 359 ALA 359 489 489 ALA ALA A . n A 1 360 VAL 360 490 490 VAL VAL A . n A 1 361 ALA 361 491 491 ALA ALA A . n A 1 362 ALA 362 492 492 ALA ALA A . n A 1 363 ARG 363 493 493 ARG ARG A . n A 1 364 GLY 364 494 494 GLY GLY A . n A 1 365 LEU 365 495 495 LEU LEU A . n A 1 366 ASP 366 496 496 ASP ASP A . n A 1 367 ILE 367 497 497 ILE ILE A . n A 1 368 LYS 368 498 498 LYS LYS A . n A 1 369 ASN 369 499 499 ASN ASN A . n A 1 370 VAL 370 500 500 VAL VAL A . n A 1 371 ASP 371 501 501 ASP ASP A . n A 1 372 ILE 372 502 502 ILE ILE A . n A 1 373 VAL 373 503 503 VAL VAL A . n A 1 374 VAL 374 504 504 VAL VAL A . n A 1 375 ASN 375 505 505 ASN ASN A . n A 1 376 TYR 376 506 506 TYR TYR A . n A 1 377 ASP 377 507 507 ASP ASP A . n A 1 378 LEU 378 508 508 LEU LEU A . n A 1 379 PRO 379 509 509 PRO PRO A . n A 1 380 LYS 380 510 510 LYS LYS A . n A 1 381 SER 381 511 511 SER SER A . n A 1 382 ILE 382 512 512 ILE ILE A . n A 1 383 ASP 383 513 513 ASP ASP A . n A 1 384 GLU 384 514 514 GLU GLU A . n A 1 385 TYR 385 515 515 TYR TYR A . n A 1 386 VAL 386 516 516 VAL VAL A . n A 1 387 HIS 387 517 517 HIS HIS A . n A 1 388 ARG 388 518 518 ARG ARG A . n A 1 389 ILE 389 519 519 ILE ILE A . n A 1 390 GLY 390 520 520 GLY GLY A . n A 1 391 ARG 391 521 521 ARG ARG A . n A 1 392 THR 392 522 522 THR THR A . n A 1 393 GLY 393 523 523 GLY GLY A . n A 1 394 ARG 394 524 524 ARG ARG A . n A 1 395 VAL 395 525 525 VAL VAL A . n A 1 396 GLY 396 526 526 GLY GLY A . n A 1 397 ASN 397 527 527 ASN ASN A . n A 1 398 ARG 398 528 528 ARG ARG A . n A 1 399 GLY 399 529 529 GLY GLY A . n A 1 400 LYS 400 530 530 LYS LYS A . n A 1 401 ALA 401 531 531 ALA ALA A . n A 1 402 VAL 402 532 532 VAL VAL A . n A 1 403 SER 403 533 533 SER SER A . n A 1 404 PHE 404 534 534 PHE PHE A . n A 1 405 TYR 405 535 535 TYR TYR A . n A 1 406 ASP 406 536 536 ASP ASP A . n A 1 407 SER 407 537 537 SER SER A . n A 1 408 ASP 408 538 538 ASP ASP A . n A 1 409 GLN 409 539 539 GLN GLN A . n A 1 410 ASP 410 540 540 ASP ASP A . n A 1 411 LEU 411 541 541 LEU LEU A . n A 1 412 ALA 412 542 542 ALA ALA A . n A 1 413 LEU 413 543 543 LEU LEU A . n A 1 414 VAL 414 544 544 VAL VAL A . n A 1 415 ALA 415 545 545 ALA ALA A . n A 1 416 ASP 416 546 546 ASP ASP A . n A 1 417 LEU 417 547 547 LEU LEU A . n A 1 418 SER 418 548 548 SER SER A . n A 1 419 LYS 419 549 549 LYS LYS A . n A 1 420 ILE 420 550 550 ILE ILE A . n A 1 421 LEU 421 551 551 LEU LEU A . n A 1 422 ARG 422 552 552 ARG ARG A . n A 1 423 GLN 423 553 553 GLN GLN A . n A 1 424 ALA 424 554 554 ALA ALA A . n A 1 425 ASP 425 555 555 ASP ASP A . n A 1 426 GLN 426 556 556 GLN GLN A . n A 1 427 SER 427 557 557 SER SER A . n A 1 428 VAL 428 558 558 VAL VAL A . n A 1 429 PRO 429 559 559 PRO PRO A . n A 1 430 ASP 430 560 560 ASP ASP A . n A 1 431 PHE 431 561 561 PHE PHE A . n A 1 432 LEU 432 562 562 LEU LEU A . n A 1 433 LYS 433 563 563 LYS LYS A . n A 1 434 GLY 434 564 ? ? ? A . n B 2 1 U 1 1 1 U U D . n B 2 2 G 2 2 2 G G D . n B 2 3 A 3 3 3 A A D . n B 2 4 C 4 4 4 C C D . n B 2 5 A 5 5 5 A A D . n B 2 6 U 6 6 6 U U D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP 1 1564 1564 ADP ADP A . D 4 PO4 1 1565 1565 PO4 PO4 A . E 5 MG 1 1566 1566 MG MG A . F 6 HOH 1 2001 2001 HOH HOH A . F 6 HOH 2 2002 2002 HOH HOH A . F 6 HOH 3 2003 2003 HOH HOH A . F 6 HOH 4 2004 2004 HOH HOH A . F 6 HOH 5 2005 2005 HOH HOH A . F 6 HOH 6 2006 2006 HOH HOH A . F 6 HOH 7 2007 2007 HOH HOH A . F 6 HOH 8 2008 2008 HOH HOH A . F 6 HOH 9 2009 2009 HOH HOH A . F 6 HOH 10 2010 2010 HOH HOH A . F 6 HOH 11 2011 2011 HOH HOH A . F 6 HOH 12 2012 2012 HOH HOH A . F 6 HOH 13 2013 2013 HOH HOH A . F 6 HOH 14 2014 2014 HOH HOH A . F 6 HOH 15 2015 2015 HOH HOH A . F 6 HOH 16 2016 2016 HOH HOH A . F 6 HOH 17 2017 2017 HOH HOH A . F 6 HOH 18 2018 2018 HOH HOH A . F 6 HOH 19 2019 2019 HOH HOH A . F 6 HOH 20 2020 2020 HOH HOH A . F 6 HOH 21 2021 2021 HOH HOH A . F 6 HOH 22 2022 2022 HOH HOH A . F 6 HOH 23 2023 2023 HOH HOH A . F 6 HOH 24 2024 2024 HOH HOH A . F 6 HOH 25 2025 2025 HOH HOH A . F 6 HOH 26 2026 2026 HOH HOH A . F 6 HOH 27 2027 2027 HOH HOH A . F 6 HOH 28 2028 2028 HOH HOH A . F 6 HOH 29 2029 2029 HOH HOH A . F 6 HOH 30 2030 2030 HOH HOH A . F 6 HOH 31 2031 2031 HOH HOH A . F 6 HOH 32 2032 2032 HOH HOH A . F 6 HOH 33 2033 2033 HOH HOH A . F 6 HOH 34 2034 2034 HOH HOH A . F 6 HOH 35 2035 2035 HOH HOH A . F 6 HOH 36 2036 2036 HOH HOH A . F 6 HOH 37 2037 2037 HOH HOH A . F 6 HOH 38 2038 2038 HOH HOH A . F 6 HOH 39 2039 2039 HOH HOH A . F 6 HOH 40 2040 2040 HOH HOH A . F 6 HOH 41 2041 2041 HOH HOH A . F 6 HOH 42 2042 2042 HOH HOH A . F 6 HOH 43 2043 2043 HOH HOH A . F 6 HOH 44 2044 2044 HOH HOH A . F 6 HOH 45 2045 2045 HOH HOH A . F 6 HOH 46 2046 2046 HOH HOH A . F 6 HOH 47 2047 2047 HOH HOH A . F 6 HOH 48 2048 2048 HOH HOH A . F 6 HOH 49 2049 2049 HOH HOH A . F 6 HOH 50 2050 2050 HOH HOH A . F 6 HOH 51 2051 2051 HOH HOH A . F 6 HOH 52 2052 2052 HOH HOH A . F 6 HOH 53 2053 2053 HOH HOH A . F 6 HOH 54 2054 2054 HOH HOH A . F 6 HOH 55 2055 2055 HOH HOH A . F 6 HOH 56 2056 2056 HOH HOH A . F 6 HOH 57 2057 2057 HOH HOH A . F 6 HOH 58 2058 2058 HOH HOH A . F 6 HOH 59 2059 2059 HOH HOH A . F 6 HOH 60 2060 2060 HOH HOH A . F 6 HOH 61 2061 2061 HOH HOH A . F 6 HOH 62 2062 2062 HOH HOH A . F 6 HOH 63 2063 2063 HOH HOH A . F 6 HOH 64 2064 2064 HOH HOH A . F 6 HOH 65 2065 2065 HOH HOH A . F 6 HOH 66 2066 2066 HOH HOH A . F 6 HOH 67 2067 2067 HOH HOH A . F 6 HOH 68 2068 2068 HOH HOH A . F 6 HOH 69 2069 2069 HOH HOH A . F 6 HOH 70 2070 2070 HOH HOH A . F 6 HOH 71 2071 2071 HOH HOH A . F 6 HOH 72 2072 2072 HOH HOH A . F 6 HOH 73 2073 2073 HOH HOH A . F 6 HOH 74 2074 2074 HOH HOH A . F 6 HOH 75 2075 2075 HOH HOH A . F 6 HOH 76 2076 2076 HOH HOH A . F 6 HOH 77 2077 2077 HOH HOH A . F 6 HOH 78 2078 2078 HOH HOH A . F 6 HOH 79 2079 2079 HOH HOH A . F 6 HOH 80 2080 2080 HOH HOH A . F 6 HOH 81 2081 2081 HOH HOH A . F 6 HOH 82 2082 2082 HOH HOH A . F 6 HOH 83 2083 2083 HOH HOH A . F 6 HOH 84 2084 2084 HOH HOH A . F 6 HOH 85 2085 2085 HOH HOH A . G 6 HOH 1 2001 2001 HOH HOH D . G 6 HOH 2 2002 2002 HOH HOH D . G 6 HOH 3 2003 2003 HOH HOH D . G 6 HOH 4 2004 2004 HOH HOH D . G 6 HOH 5 2005 2005 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2510 ? 1 MORE -40.7 ? 1 'SSA (A^2)' 18870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2B ? C ADP . ? A ADP 1564 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O2 ? D PO4 . ? A PO4 1565 ? 1_555 109.5 ? 2 O2B ? C ADP . ? A ADP 1564 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2021 ? 1_555 83.1 ? 3 O2 ? D PO4 . ? A PO4 1565 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2021 ? 1_555 164.9 ? 4 O2B ? C ADP . ? A ADP 1564 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2038 ? 1_555 120.6 ? 5 O2 ? D PO4 . ? A PO4 1565 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2038 ? 1_555 86.0 ? 6 O ? F HOH . ? A HOH 2021 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2038 ? 1_555 80.2 ? 7 O2B ? C ADP . ? A ADP 1564 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2039 ? 1_555 141.4 ? 8 O2 ? D PO4 . ? A PO4 1565 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2039 ? 1_555 91.3 ? 9 O ? F HOH . ? A HOH 2021 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2039 ? 1_555 82.9 ? 10 O ? F HOH . ? A HOH 2038 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2039 ? 1_555 92.1 ? 11 O2B ? C ADP . ? A ADP 1564 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2070 ? 1_555 74.1 ? 12 O2 ? D PO4 . ? A PO4 1565 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2070 ? 1_555 88.2 ? 13 O ? F HOH . ? A HOH 2021 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2070 ? 1_555 103.5 ? 14 O ? F HOH . ? A HOH 2038 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2070 ? 1_555 165.3 ? 15 O ? F HOH . ? A HOH 2039 ? 1_555 MG ? E MG . ? A MG 1566 ? 1_555 O ? F HOH . ? A HOH 2070 ? 1_555 74.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-18 2 'Structure model' 1 1 2014-07-02 3 'Structure model' 1 2 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -9.2445 -6.3713 12.8483 0.0851 0.0915 0.0286 0.0446 -0.0024 -0.0258 1.9468 0.9541 0.9158 0.1741 -0.0887 -0.1851 0.0287 0.2335 0.0637 -0.0338 -0.0305 -0.0048 -0.0158 -0.0627 0.0018 'X-RAY DIFFRACTION' 2 ? refined -14.9286 -7.3627 5.0083 0.1051 0.2576 0.0113 0.0241 0.0075 -0.0212 6.1427 0.0917 1.2167 0.7247 2.7311 0.3258 0.0173 0.3449 -0.0534 0.0149 0.0074 -0.0032 0.0108 0.1302 -0.0247 'X-RAY DIFFRACTION' 3 ? refined 2.2170 -8.1732 25.9816 0.1861 0.0692 0.0848 0.0134 -0.0717 -0.0467 3.9001 2.7977 6.4480 2.3158 -3.8401 -3.9507 0.2276 -0.4104 0.0554 0.4671 -0.1219 -0.0753 -0.3626 0.3076 -0.1057 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 134 ? ? A 563 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 1564 ? ? A 1566 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 D 1 ? ? D 6 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0069 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 U _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 U _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.487 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.120 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 376 ? ? -171.11 76.10 2 1 ASN A 390 ? ? 35.38 68.13 3 1 GLN A 455 ? ? 86.58 25.71 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 131 ? A GLY 1 2 1 Y 1 A ALA 132 ? A ALA 2 3 1 Y 1 A MET 133 ? A MET 3 4 1 Y 1 A GLY 564 ? A GLY 434 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADP PB P N N 38 ADP O1B O N N 39 ADP O2B O N N 40 ADP O3B O N N 41 ADP PA P N S 42 ADP O1A O N N 43 ADP O2A O N N 44 ADP O3A O N N 45 ADP "O5'" O N N 46 ADP "C5'" C N N 47 ADP "C4'" C N R 48 ADP "O4'" O N N 49 ADP "C3'" C N S 50 ADP "O3'" O N N 51 ADP "C2'" C N R 52 ADP "O2'" O N N 53 ADP "C1'" C N R 54 ADP N9 N Y N 55 ADP C8 C Y N 56 ADP N7 N Y N 57 ADP C5 C Y N 58 ADP C6 C Y N 59 ADP N6 N N N 60 ADP N1 N Y N 61 ADP C2 C Y N 62 ADP N3 N Y N 63 ADP C4 C Y N 64 ADP HOB2 H N N 65 ADP HOB3 H N N 66 ADP HOA2 H N N 67 ADP "H5'1" H N N 68 ADP "H5'2" H N N 69 ADP "H4'" H N N 70 ADP "H3'" H N N 71 ADP "HO3'" H N N 72 ADP "H2'" H N N 73 ADP "HO2'" H N N 74 ADP "H1'" H N N 75 ADP H8 H N N 76 ADP HN61 H N N 77 ADP HN62 H N N 78 ADP H2 H N N 79 ALA N N N N 80 ALA CA C N S 81 ALA C C N N 82 ALA O O N N 83 ALA CB C N N 84 ALA OXT O N N 85 ALA H H N N 86 ALA H2 H N N 87 ALA HA H N N 88 ALA HB1 H N N 89 ALA HB2 H N N 90 ALA HB3 H N N 91 ALA HXT H N N 92 ARG N N N N 93 ARG CA C N S 94 ARG C C N N 95 ARG O O N N 96 ARG CB C N N 97 ARG CG C N N 98 ARG CD C N N 99 ARG NE N N N 100 ARG CZ C N N 101 ARG NH1 N N N 102 ARG NH2 N N N 103 ARG OXT O N N 104 ARG H H N N 105 ARG H2 H N N 106 ARG HA H N N 107 ARG HB2 H N N 108 ARG HB3 H N N 109 ARG HG2 H N N 110 ARG HG3 H N N 111 ARG HD2 H N N 112 ARG HD3 H N N 113 ARG HE H N N 114 ARG HH11 H N N 115 ARG HH12 H N N 116 ARG HH21 H N N 117 ARG HH22 H N N 118 ARG HXT H N N 119 ASN N N N N 120 ASN CA C N S 121 ASN C C N N 122 ASN O O N N 123 ASN CB C N N 124 ASN CG C N N 125 ASN OD1 O N N 126 ASN ND2 N N N 127 ASN OXT O N N 128 ASN H H N N 129 ASN H2 H N N 130 ASN HA H N N 131 ASN HB2 H N N 132 ASN HB3 H N N 133 ASN HD21 H N N 134 ASN HD22 H N N 135 ASN HXT H N N 136 ASP N N N N 137 ASP CA C N S 138 ASP C C N N 139 ASP O O N N 140 ASP CB C N N 141 ASP CG C N N 142 ASP OD1 O N N 143 ASP OD2 O N N 144 ASP OXT O N N 145 ASP H H N N 146 ASP H2 H N N 147 ASP HA H N N 148 ASP HB2 H N N 149 ASP HB3 H N N 150 ASP HD2 H N N 151 ASP HXT H N N 152 C OP3 O N N 153 C P P N N 154 C OP1 O N N 155 C OP2 O N N 156 C "O5'" O N N 157 C "C5'" C N N 158 C "C4'" C N R 159 C "O4'" O N N 160 C "C3'" C N S 161 C "O3'" O N N 162 C "C2'" C N R 163 C "O2'" O N N 164 C "C1'" C N R 165 C N1 N N N 166 C C2 C N N 167 C O2 O N N 168 C N3 N N N 169 C C4 C N N 170 C N4 N N N 171 C C5 C N N 172 C C6 C N N 173 C HOP3 H N N 174 C HOP2 H N N 175 C "H5'" H N N 176 C "H5''" H N N 177 C "H4'" H N N 178 C "H3'" H N N 179 C "HO3'" H N N 180 C "H2'" H N N 181 C "HO2'" H N N 182 C "H1'" H N N 183 C H41 H N N 184 C H42 H N N 185 C H5 H N N 186 C H6 H N N 187 CYS N N N N 188 CYS CA C N R 189 CYS C C N N 190 CYS O O N N 191 CYS CB C N N 192 CYS SG S N N 193 CYS OXT O N N 194 CYS H H N N 195 CYS H2 H N N 196 CYS HA H N N 197 CYS HB2 H N N 198 CYS HB3 H N N 199 CYS HG H N N 200 CYS HXT H N N 201 G OP3 O N N 202 G P P N N 203 G OP1 O N N 204 G OP2 O N N 205 G "O5'" O N N 206 G "C5'" C N N 207 G "C4'" C N R 208 G "O4'" O N N 209 G "C3'" C N S 210 G "O3'" O N N 211 G "C2'" C N R 212 G "O2'" O N N 213 G "C1'" C N R 214 G N9 N Y N 215 G C8 C Y N 216 G N7 N Y N 217 G C5 C Y N 218 G C6 C N N 219 G O6 O N N 220 G N1 N N N 221 G C2 C N N 222 G N2 N N N 223 G N3 N N N 224 G C4 C Y N 225 G HOP3 H N N 226 G HOP2 H N N 227 G "H5'" H N N 228 G "H5''" H N N 229 G "H4'" H N N 230 G "H3'" H N N 231 G "HO3'" H N N 232 G "H2'" H N N 233 G "HO2'" H N N 234 G "H1'" H N N 235 G H8 H N N 236 G H1 H N N 237 G H21 H N N 238 G H22 H N N 239 GLN N N N N 240 GLN CA C N S 241 GLN C C N N 242 GLN O O N N 243 GLN CB C N N 244 GLN CG C N N 245 GLN CD C N N 246 GLN OE1 O N N 247 GLN NE2 N N N 248 GLN OXT O N N 249 GLN H H N N 250 GLN H2 H N N 251 GLN HA H N N 252 GLN HB2 H N N 253 GLN HB3 H N N 254 GLN HG2 H N N 255 GLN HG3 H N N 256 GLN HE21 H N N 257 GLN HE22 H N N 258 GLN HXT H N N 259 GLU N N N N 260 GLU CA C N S 261 GLU C C N N 262 GLU O O N N 263 GLU CB C N N 264 GLU CG C N N 265 GLU CD C N N 266 GLU OE1 O N N 267 GLU OE2 O N N 268 GLU OXT O N N 269 GLU H H N N 270 GLU H2 H N N 271 GLU HA H N N 272 GLU HB2 H N N 273 GLU HB3 H N N 274 GLU HG2 H N N 275 GLU HG3 H N N 276 GLU HE2 H N N 277 GLU HXT H N N 278 GLY N N N N 279 GLY CA C N N 280 GLY C C N N 281 GLY O O N N 282 GLY OXT O N N 283 GLY H H N N 284 GLY H2 H N N 285 GLY HA2 H N N 286 GLY HA3 H N N 287 GLY HXT H N N 288 HIS N N N N 289 HIS CA C N S 290 HIS C C N N 291 HIS O O N N 292 HIS CB C N N 293 HIS CG C Y N 294 HIS ND1 N Y N 295 HIS CD2 C Y N 296 HIS CE1 C Y N 297 HIS NE2 N Y N 298 HIS OXT O N N 299 HIS H H N N 300 HIS H2 H N N 301 HIS HA H N N 302 HIS HB2 H N N 303 HIS HB3 H N N 304 HIS HD1 H N N 305 HIS HD2 H N N 306 HIS HE1 H N N 307 HIS HE2 H N N 308 HIS HXT H N N 309 HOH O O N N 310 HOH H1 H N N 311 HOH H2 H N N 312 ILE N N N N 313 ILE CA C N S 314 ILE C C N N 315 ILE O O N N 316 ILE CB C N S 317 ILE CG1 C N N 318 ILE CG2 C N N 319 ILE CD1 C N N 320 ILE OXT O N N 321 ILE H H N N 322 ILE H2 H N N 323 ILE HA H N N 324 ILE HB H N N 325 ILE HG12 H N N 326 ILE HG13 H N N 327 ILE HG21 H N N 328 ILE HG22 H N N 329 ILE HG23 H N N 330 ILE HD11 H N N 331 ILE HD12 H N N 332 ILE HD13 H N N 333 ILE HXT H N N 334 LEU N N N N 335 LEU CA C N S 336 LEU C C N N 337 LEU O O N N 338 LEU CB C N N 339 LEU CG C N N 340 LEU CD1 C N N 341 LEU CD2 C N N 342 LEU OXT O N N 343 LEU H H N N 344 LEU H2 H N N 345 LEU HA H N N 346 LEU HB2 H N N 347 LEU HB3 H N N 348 LEU HG H N N 349 LEU HD11 H N N 350 LEU HD12 H N N 351 LEU HD13 H N N 352 LEU HD21 H N N 353 LEU HD22 H N N 354 LEU HD23 H N N 355 LEU HXT H N N 356 LYS N N N N 357 LYS CA C N S 358 LYS C C N N 359 LYS O O N N 360 LYS CB C N N 361 LYS CG C N N 362 LYS CD C N N 363 LYS CE C N N 364 LYS NZ N N N 365 LYS OXT O N N 366 LYS H H N N 367 LYS H2 H N N 368 LYS HA H N N 369 LYS HB2 H N N 370 LYS HB3 H N N 371 LYS HG2 H N N 372 LYS HG3 H N N 373 LYS HD2 H N N 374 LYS HD3 H N N 375 LYS HE2 H N N 376 LYS HE3 H N N 377 LYS HZ1 H N N 378 LYS HZ2 H N N 379 LYS HZ3 H N N 380 LYS HXT H N N 381 MET N N N N 382 MET CA C N S 383 MET C C N N 384 MET O O N N 385 MET CB C N N 386 MET CG C N N 387 MET SD S N N 388 MET CE C N N 389 MET OXT O N N 390 MET H H N N 391 MET H2 H N N 392 MET HA H N N 393 MET HB2 H N N 394 MET HB3 H N N 395 MET HG2 H N N 396 MET HG3 H N N 397 MET HE1 H N N 398 MET HE2 H N N 399 MET HE3 H N N 400 MET HXT H N N 401 MG MG MG N N 402 PHE N N N N 403 PHE CA C N S 404 PHE C C N N 405 PHE O O N N 406 PHE CB C N N 407 PHE CG C Y N 408 PHE CD1 C Y N 409 PHE CD2 C Y N 410 PHE CE1 C Y N 411 PHE CE2 C Y N 412 PHE CZ C Y N 413 PHE OXT O N N 414 PHE H H N N 415 PHE H2 H N N 416 PHE HA H N N 417 PHE HB2 H N N 418 PHE HB3 H N N 419 PHE HD1 H N N 420 PHE HD2 H N N 421 PHE HE1 H N N 422 PHE HE2 H N N 423 PHE HZ H N N 424 PHE HXT H N N 425 PO4 P P N N 426 PO4 O1 O N N 427 PO4 O2 O N N 428 PO4 O3 O N N 429 PO4 O4 O N N 430 PRO N N N N 431 PRO CA C N S 432 PRO C C N N 433 PRO O O N N 434 PRO CB C N N 435 PRO CG C N N 436 PRO CD C N N 437 PRO OXT O N N 438 PRO H H N N 439 PRO HA H N N 440 PRO HB2 H N N 441 PRO HB3 H N N 442 PRO HG2 H N N 443 PRO HG3 H N N 444 PRO HD2 H N N 445 PRO HD3 H N N 446 PRO HXT H N N 447 SER N N N N 448 SER CA C N S 449 SER C C N N 450 SER O O N N 451 SER CB C N N 452 SER OG O N N 453 SER OXT O N N 454 SER H H N N 455 SER H2 H N N 456 SER HA H N N 457 SER HB2 H N N 458 SER HB3 H N N 459 SER HG H N N 460 SER HXT H N N 461 THR N N N N 462 THR CA C N S 463 THR C C N N 464 THR O O N N 465 THR CB C N R 466 THR OG1 O N N 467 THR CG2 C N N 468 THR OXT O N N 469 THR H H N N 470 THR H2 H N N 471 THR HA H N N 472 THR HB H N N 473 THR HG1 H N N 474 THR HG21 H N N 475 THR HG22 H N N 476 THR HG23 H N N 477 THR HXT H N N 478 TYR N N N N 479 TYR CA C N S 480 TYR C C N N 481 TYR O O N N 482 TYR CB C N N 483 TYR CG C Y N 484 TYR CD1 C Y N 485 TYR CD2 C Y N 486 TYR CE1 C Y N 487 TYR CE2 C Y N 488 TYR CZ C Y N 489 TYR OH O N N 490 TYR OXT O N N 491 TYR H H N N 492 TYR H2 H N N 493 TYR HA H N N 494 TYR HB2 H N N 495 TYR HB3 H N N 496 TYR HD1 H N N 497 TYR HD2 H N N 498 TYR HE1 H N N 499 TYR HE2 H N N 500 TYR HH H N N 501 TYR HXT H N N 502 U OP3 O N N 503 U P P N N 504 U OP1 O N N 505 U OP2 O N N 506 U "O5'" O N N 507 U "C5'" C N N 508 U "C4'" C N R 509 U "O4'" O N N 510 U "C3'" C N S 511 U "O3'" O N N 512 U "C2'" C N R 513 U "O2'" O N N 514 U "C1'" C N R 515 U N1 N N N 516 U C2 C N N 517 U O2 O N N 518 U N3 N N N 519 U C4 C N N 520 U O4 O N N 521 U C5 C N N 522 U C6 C N N 523 U HOP3 H N N 524 U HOP2 H N N 525 U "H5'" H N N 526 U "H5''" H N N 527 U "H4'" H N N 528 U "H3'" H N N 529 U "HO3'" H N N 530 U "H2'" H N N 531 U "HO2'" H N N 532 U "H1'" H N N 533 U H3 H N N 534 U H5 H N N 535 U H6 H N N 536 VAL N N N N 537 VAL CA C N S 538 VAL C C N N 539 VAL O O N N 540 VAL CB C N N 541 VAL CG1 C N N 542 VAL CG2 C N N 543 VAL OXT O N N 544 VAL H H N N 545 VAL H2 H N N 546 VAL HA H N N 547 VAL HB H N N 548 VAL HG11 H N N 549 VAL HG12 H N N 550 VAL HG13 H N N 551 VAL HG21 H N N 552 VAL HG22 H N N 553 VAL HG23 H N N 554 VAL HXT H N N 555 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADP PB O1B doub N N 40 ADP PB O2B sing N N 41 ADP PB O3B sing N N 42 ADP PB O3A sing N N 43 ADP O2B HOB2 sing N N 44 ADP O3B HOB3 sing N N 45 ADP PA O1A doub N N 46 ADP PA O2A sing N N 47 ADP PA O3A sing N N 48 ADP PA "O5'" sing N N 49 ADP O2A HOA2 sing N N 50 ADP "O5'" "C5'" sing N N 51 ADP "C5'" "C4'" sing N N 52 ADP "C5'" "H5'1" sing N N 53 ADP "C5'" "H5'2" sing N N 54 ADP "C4'" "O4'" sing N N 55 ADP "C4'" "C3'" sing N N 56 ADP "C4'" "H4'" sing N N 57 ADP "O4'" "C1'" sing N N 58 ADP "C3'" "O3'" sing N N 59 ADP "C3'" "C2'" sing N N 60 ADP "C3'" "H3'" sing N N 61 ADP "O3'" "HO3'" sing N N 62 ADP "C2'" "O2'" sing N N 63 ADP "C2'" "C1'" sing N N 64 ADP "C2'" "H2'" sing N N 65 ADP "O2'" "HO2'" sing N N 66 ADP "C1'" N9 sing N N 67 ADP "C1'" "H1'" sing N N 68 ADP N9 C8 sing Y N 69 ADP N9 C4 sing Y N 70 ADP C8 N7 doub Y N 71 ADP C8 H8 sing N N 72 ADP N7 C5 sing Y N 73 ADP C5 C6 sing Y N 74 ADP C5 C4 doub Y N 75 ADP C6 N6 sing N N 76 ADP C6 N1 doub Y N 77 ADP N6 HN61 sing N N 78 ADP N6 HN62 sing N N 79 ADP N1 C2 sing Y N 80 ADP C2 N3 doub Y N 81 ADP C2 H2 sing N N 82 ADP N3 C4 sing Y N 83 ALA N CA sing N N 84 ALA N H sing N N 85 ALA N H2 sing N N 86 ALA CA C sing N N 87 ALA CA CB sing N N 88 ALA CA HA sing N N 89 ALA C O doub N N 90 ALA C OXT sing N N 91 ALA CB HB1 sing N N 92 ALA CB HB2 sing N N 93 ALA CB HB3 sing N N 94 ALA OXT HXT sing N N 95 ARG N CA sing N N 96 ARG N H sing N N 97 ARG N H2 sing N N 98 ARG CA C sing N N 99 ARG CA CB sing N N 100 ARG CA HA sing N N 101 ARG C O doub N N 102 ARG C OXT sing N N 103 ARG CB CG sing N N 104 ARG CB HB2 sing N N 105 ARG CB HB3 sing N N 106 ARG CG CD sing N N 107 ARG CG HG2 sing N N 108 ARG CG HG3 sing N N 109 ARG CD NE sing N N 110 ARG CD HD2 sing N N 111 ARG CD HD3 sing N N 112 ARG NE CZ sing N N 113 ARG NE HE sing N N 114 ARG CZ NH1 sing N N 115 ARG CZ NH2 doub N N 116 ARG NH1 HH11 sing N N 117 ARG NH1 HH12 sing N N 118 ARG NH2 HH21 sing N N 119 ARG NH2 HH22 sing N N 120 ARG OXT HXT sing N N 121 ASN N CA sing N N 122 ASN N H sing N N 123 ASN N H2 sing N N 124 ASN CA C sing N N 125 ASN CA CB sing N N 126 ASN CA HA sing N N 127 ASN C O doub N N 128 ASN C OXT sing N N 129 ASN CB CG sing N N 130 ASN CB HB2 sing N N 131 ASN CB HB3 sing N N 132 ASN CG OD1 doub N N 133 ASN CG ND2 sing N N 134 ASN ND2 HD21 sing N N 135 ASN ND2 HD22 sing N N 136 ASN OXT HXT sing N N 137 ASP N CA sing N N 138 ASP N H sing N N 139 ASP N H2 sing N N 140 ASP CA C sing N N 141 ASP CA CB sing N N 142 ASP CA HA sing N N 143 ASP C O doub N N 144 ASP C OXT sing N N 145 ASP CB CG sing N N 146 ASP CB HB2 sing N N 147 ASP CB HB3 sing N N 148 ASP CG OD1 doub N N 149 ASP CG OD2 sing N N 150 ASP OD2 HD2 sing N N 151 ASP OXT HXT sing N N 152 C OP3 P sing N N 153 C OP3 HOP3 sing N N 154 C P OP1 doub N N 155 C P OP2 sing N N 156 C P "O5'" sing N N 157 C OP2 HOP2 sing N N 158 C "O5'" "C5'" sing N N 159 C "C5'" "C4'" sing N N 160 C "C5'" "H5'" sing N N 161 C "C5'" "H5''" sing N N 162 C "C4'" "O4'" sing N N 163 C "C4'" "C3'" sing N N 164 C "C4'" "H4'" sing N N 165 C "O4'" "C1'" sing N N 166 C "C3'" "O3'" sing N N 167 C "C3'" "C2'" sing N N 168 C "C3'" "H3'" sing N N 169 C "O3'" "HO3'" sing N N 170 C "C2'" "O2'" sing N N 171 C "C2'" "C1'" sing N N 172 C "C2'" "H2'" sing N N 173 C "O2'" "HO2'" sing N N 174 C "C1'" N1 sing N N 175 C "C1'" "H1'" sing N N 176 C N1 C2 sing N N 177 C N1 C6 sing N N 178 C C2 O2 doub N N 179 C C2 N3 sing N N 180 C N3 C4 doub N N 181 C C4 N4 sing N N 182 C C4 C5 sing N N 183 C N4 H41 sing N N 184 C N4 H42 sing N N 185 C C5 C6 doub N N 186 C C5 H5 sing N N 187 C C6 H6 sing N N 188 CYS N CA sing N N 189 CYS N H sing N N 190 CYS N H2 sing N N 191 CYS CA C sing N N 192 CYS CA CB sing N N 193 CYS CA HA sing N N 194 CYS C O doub N N 195 CYS C OXT sing N N 196 CYS CB SG sing N N 197 CYS CB HB2 sing N N 198 CYS CB HB3 sing N N 199 CYS SG HG sing N N 200 CYS OXT HXT sing N N 201 G OP3 P sing N N 202 G OP3 HOP3 sing N N 203 G P OP1 doub N N 204 G P OP2 sing N N 205 G P "O5'" sing N N 206 G OP2 HOP2 sing N N 207 G "O5'" "C5'" sing N N 208 G "C5'" "C4'" sing N N 209 G "C5'" "H5'" sing N N 210 G "C5'" "H5''" sing N N 211 G "C4'" "O4'" sing N N 212 G "C4'" "C3'" sing N N 213 G "C4'" "H4'" sing N N 214 G "O4'" "C1'" sing N N 215 G "C3'" "O3'" sing N N 216 G "C3'" "C2'" sing N N 217 G "C3'" "H3'" sing N N 218 G "O3'" "HO3'" sing N N 219 G "C2'" "O2'" sing N N 220 G "C2'" "C1'" sing N N 221 G "C2'" "H2'" sing N N 222 G "O2'" "HO2'" sing N N 223 G "C1'" N9 sing N N 224 G "C1'" "H1'" sing N N 225 G N9 C8 sing Y N 226 G N9 C4 sing Y N 227 G C8 N7 doub Y N 228 G C8 H8 sing N N 229 G N7 C5 sing Y N 230 G C5 C6 sing N N 231 G C5 C4 doub Y N 232 G C6 O6 doub N N 233 G C6 N1 sing N N 234 G N1 C2 sing N N 235 G N1 H1 sing N N 236 G C2 N2 sing N N 237 G C2 N3 doub N N 238 G N2 H21 sing N N 239 G N2 H22 sing N N 240 G N3 C4 sing N N 241 GLN N CA sing N N 242 GLN N H sing N N 243 GLN N H2 sing N N 244 GLN CA C sing N N 245 GLN CA CB sing N N 246 GLN CA HA sing N N 247 GLN C O doub N N 248 GLN C OXT sing N N 249 GLN CB CG sing N N 250 GLN CB HB2 sing N N 251 GLN CB HB3 sing N N 252 GLN CG CD sing N N 253 GLN CG HG2 sing N N 254 GLN CG HG3 sing N N 255 GLN CD OE1 doub N N 256 GLN CD NE2 sing N N 257 GLN NE2 HE21 sing N N 258 GLN NE2 HE22 sing N N 259 GLN OXT HXT sing N N 260 GLU N CA sing N N 261 GLU N H sing N N 262 GLU N H2 sing N N 263 GLU CA C sing N N 264 GLU CA CB sing N N 265 GLU CA HA sing N N 266 GLU C O doub N N 267 GLU C OXT sing N N 268 GLU CB CG sing N N 269 GLU CB HB2 sing N N 270 GLU CB HB3 sing N N 271 GLU CG CD sing N N 272 GLU CG HG2 sing N N 273 GLU CG HG3 sing N N 274 GLU CD OE1 doub N N 275 GLU CD OE2 sing N N 276 GLU OE2 HE2 sing N N 277 GLU OXT HXT sing N N 278 GLY N CA sing N N 279 GLY N H sing N N 280 GLY N H2 sing N N 281 GLY CA C sing N N 282 GLY CA HA2 sing N N 283 GLY CA HA3 sing N N 284 GLY C O doub N N 285 GLY C OXT sing N N 286 GLY OXT HXT sing N N 287 HIS N CA sing N N 288 HIS N H sing N N 289 HIS N H2 sing N N 290 HIS CA C sing N N 291 HIS CA CB sing N N 292 HIS CA HA sing N N 293 HIS C O doub N N 294 HIS C OXT sing N N 295 HIS CB CG sing N N 296 HIS CB HB2 sing N N 297 HIS CB HB3 sing N N 298 HIS CG ND1 sing Y N 299 HIS CG CD2 doub Y N 300 HIS ND1 CE1 doub Y N 301 HIS ND1 HD1 sing N N 302 HIS CD2 NE2 sing Y N 303 HIS CD2 HD2 sing N N 304 HIS CE1 NE2 sing Y N 305 HIS CE1 HE1 sing N N 306 HIS NE2 HE2 sing N N 307 HIS OXT HXT sing N N 308 HOH O H1 sing N N 309 HOH O H2 sing N N 310 ILE N CA sing N N 311 ILE N H sing N N 312 ILE N H2 sing N N 313 ILE CA C sing N N 314 ILE CA CB sing N N 315 ILE CA HA sing N N 316 ILE C O doub N N 317 ILE C OXT sing N N 318 ILE CB CG1 sing N N 319 ILE CB CG2 sing N N 320 ILE CB HB sing N N 321 ILE CG1 CD1 sing N N 322 ILE CG1 HG12 sing N N 323 ILE CG1 HG13 sing N N 324 ILE CG2 HG21 sing N N 325 ILE CG2 HG22 sing N N 326 ILE CG2 HG23 sing N N 327 ILE CD1 HD11 sing N N 328 ILE CD1 HD12 sing N N 329 ILE CD1 HD13 sing N N 330 ILE OXT HXT sing N N 331 LEU N CA sing N N 332 LEU N H sing N N 333 LEU N H2 sing N N 334 LEU CA C sing N N 335 LEU CA CB sing N N 336 LEU CA HA sing N N 337 LEU C O doub N N 338 LEU C OXT sing N N 339 LEU CB CG sing N N 340 LEU CB HB2 sing N N 341 LEU CB HB3 sing N N 342 LEU CG CD1 sing N N 343 LEU CG CD2 sing N N 344 LEU CG HG sing N N 345 LEU CD1 HD11 sing N N 346 LEU CD1 HD12 sing N N 347 LEU CD1 HD13 sing N N 348 LEU CD2 HD21 sing N N 349 LEU CD2 HD22 sing N N 350 LEU CD2 HD23 sing N N 351 LEU OXT HXT sing N N 352 LYS N CA sing N N 353 LYS N H sing N N 354 LYS N H2 sing N N 355 LYS CA C sing N N 356 LYS CA CB sing N N 357 LYS CA HA sing N N 358 LYS C O doub N N 359 LYS C OXT sing N N 360 LYS CB CG sing N N 361 LYS CB HB2 sing N N 362 LYS CB HB3 sing N N 363 LYS CG CD sing N N 364 LYS CG HG2 sing N N 365 LYS CG HG3 sing N N 366 LYS CD CE sing N N 367 LYS CD HD2 sing N N 368 LYS CD HD3 sing N N 369 LYS CE NZ sing N N 370 LYS CE HE2 sing N N 371 LYS CE HE3 sing N N 372 LYS NZ HZ1 sing N N 373 LYS NZ HZ2 sing N N 374 LYS NZ HZ3 sing N N 375 LYS OXT HXT sing N N 376 MET N CA sing N N 377 MET N H sing N N 378 MET N H2 sing N N 379 MET CA C sing N N 380 MET CA CB sing N N 381 MET CA HA sing N N 382 MET C O doub N N 383 MET C OXT sing N N 384 MET CB CG sing N N 385 MET CB HB2 sing N N 386 MET CB HB3 sing N N 387 MET CG SD sing N N 388 MET CG HG2 sing N N 389 MET CG HG3 sing N N 390 MET SD CE sing N N 391 MET CE HE1 sing N N 392 MET CE HE2 sing N N 393 MET CE HE3 sing N N 394 MET OXT HXT sing N N 395 PHE N CA sing N N 396 PHE N H sing N N 397 PHE N H2 sing N N 398 PHE CA C sing N N 399 PHE CA CB sing N N 400 PHE CA HA sing N N 401 PHE C O doub N N 402 PHE C OXT sing N N 403 PHE CB CG sing N N 404 PHE CB HB2 sing N N 405 PHE CB HB3 sing N N 406 PHE CG CD1 doub Y N 407 PHE CG CD2 sing Y N 408 PHE CD1 CE1 sing Y N 409 PHE CD1 HD1 sing N N 410 PHE CD2 CE2 doub Y N 411 PHE CD2 HD2 sing N N 412 PHE CE1 CZ doub Y N 413 PHE CE1 HE1 sing N N 414 PHE CE2 CZ sing Y N 415 PHE CE2 HE2 sing N N 416 PHE CZ HZ sing N N 417 PHE OXT HXT sing N N 418 PO4 P O1 doub N N 419 PO4 P O2 sing N N 420 PO4 P O3 sing N N 421 PO4 P O4 sing N N 422 PRO N CA sing N N 423 PRO N CD sing N N 424 PRO N H sing N N 425 PRO CA C sing N N 426 PRO CA CB sing N N 427 PRO CA HA sing N N 428 PRO C O doub N N 429 PRO C OXT sing N N 430 PRO CB CG sing N N 431 PRO CB HB2 sing N N 432 PRO CB HB3 sing N N 433 PRO CG CD sing N N 434 PRO CG HG2 sing N N 435 PRO CG HG3 sing N N 436 PRO CD HD2 sing N N 437 PRO CD HD3 sing N N 438 PRO OXT HXT sing N N 439 SER N CA sing N N 440 SER N H sing N N 441 SER N H2 sing N N 442 SER CA C sing N N 443 SER CA CB sing N N 444 SER CA HA sing N N 445 SER C O doub N N 446 SER C OXT sing N N 447 SER CB OG sing N N 448 SER CB HB2 sing N N 449 SER CB HB3 sing N N 450 SER OG HG sing N N 451 SER OXT HXT sing N N 452 THR N CA sing N N 453 THR N H sing N N 454 THR N H2 sing N N 455 THR CA C sing N N 456 THR CA CB sing N N 457 THR CA HA sing N N 458 THR C O doub N N 459 THR C OXT sing N N 460 THR CB OG1 sing N N 461 THR CB CG2 sing N N 462 THR CB HB sing N N 463 THR OG1 HG1 sing N N 464 THR CG2 HG21 sing N N 465 THR CG2 HG22 sing N N 466 THR CG2 HG23 sing N N 467 THR OXT HXT sing N N 468 TYR N CA sing N N 469 TYR N H sing N N 470 TYR N H2 sing N N 471 TYR CA C sing N N 472 TYR CA CB sing N N 473 TYR CA HA sing N N 474 TYR C O doub N N 475 TYR C OXT sing N N 476 TYR CB CG sing N N 477 TYR CB HB2 sing N N 478 TYR CB HB3 sing N N 479 TYR CG CD1 doub Y N 480 TYR CG CD2 sing Y N 481 TYR CD1 CE1 sing Y N 482 TYR CD1 HD1 sing N N 483 TYR CD2 CE2 doub Y N 484 TYR CD2 HD2 sing N N 485 TYR CE1 CZ doub Y N 486 TYR CE1 HE1 sing N N 487 TYR CE2 CZ sing Y N 488 TYR CE2 HE2 sing N N 489 TYR CZ OH sing N N 490 TYR OH HH sing N N 491 TYR OXT HXT sing N N 492 U OP3 P sing N N 493 U OP3 HOP3 sing N N 494 U P OP1 doub N N 495 U P OP2 sing N N 496 U P "O5'" sing N N 497 U OP2 HOP2 sing N N 498 U "O5'" "C5'" sing N N 499 U "C5'" "C4'" sing N N 500 U "C5'" "H5'" sing N N 501 U "C5'" "H5''" sing N N 502 U "C4'" "O4'" sing N N 503 U "C4'" "C3'" sing N N 504 U "C4'" "H4'" sing N N 505 U "O4'" "C1'" sing N N 506 U "C3'" "O3'" sing N N 507 U "C3'" "C2'" sing N N 508 U "C3'" "H3'" sing N N 509 U "O3'" "HO3'" sing N N 510 U "C2'" "O2'" sing N N 511 U "C2'" "C1'" sing N N 512 U "C2'" "H2'" sing N N 513 U "O2'" "HO2'" sing N N 514 U "C1'" N1 sing N N 515 U "C1'" "H1'" sing N N 516 U N1 C2 sing N N 517 U N1 C6 sing N N 518 U C2 O2 doub N N 519 U C2 N3 sing N N 520 U N3 C4 sing N N 521 U N3 H3 sing N N 522 U C4 O4 doub N N 523 U C4 C5 sing N N 524 U C5 C6 doub N N 525 U C5 H5 sing N N 526 U C6 H6 sing N N 527 VAL N CA sing N N 528 VAL N H sing N N 529 VAL N H2 sing N N 530 VAL CA C sing N N 531 VAL CA CB sing N N 532 VAL CA HA sing N N 533 VAL C O doub N N 534 VAL C OXT sing N N 535 VAL CB CG1 sing N N 536 VAL CB CG2 sing N N 537 VAL CB HB sing N N 538 VAL CG1 HG11 sing N N 539 VAL CG1 HG12 sing N N 540 VAL CG1 HG13 sing N N 541 VAL CG2 HG21 sing N N 542 VAL CG2 HG22 sing N N 543 VAL CG2 HG23 sing N N 544 VAL OXT HXT sing N N 545 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "ADENOSINE-5'-DIPHOSPHATE" ADP 4 'PHOSPHATE ION' PO4 5 'MAGNESIUM ION' MG 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DB3 _pdbx_initial_refinement_model.details 'PDB ENTRY 2DB3' #