data_4E0K # _entry.id 4E0K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E0K pdb_00004e0k 10.2210/pdb4e0k/pdb RCSB RCSB071016 ? ? WWPDB D_1000071016 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-19 2 'Structure model' 1 1 2013-06-19 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4E0K _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-04 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4E0L . unspecified PDB 4E0M . unspecified PDB 4E0N . unspecified PDB 4E0O . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, M.' 1 'Liu, C.' 2 'Sawaya, M.R.' 3 'Eisenberg, D.' 4 # _citation.id primary _citation.title 'Out-of-register beta-sheets suggest a pathway to toxic amyloid aggregates.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 20913 _citation.page_last 20918 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23213214 _citation.pdbx_database_id_DOI 10.1073/pnas.1218792109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, C.' 1 ? primary 'Zhao, M.' 2 ? primary 'Jiang, L.' 3 ? primary 'Cheng, P.N.' 4 ? primary 'Park, J.' 5 ? primary 'Sawaya, M.R.' 6 ? primary 'Pensalfini, A.' 7 ? primary 'Gou, D.' 8 ? primary 'Berk, A.J.' 9 ? primary 'Glabe, C.G.' 10 ? primary 'Nowick, J.' 11 ? primary 'Eisenberg, D.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Amyloidogenic peptide segment KDWSFY' 845.918 4 ? ? ? ? 2 non-polymer syn '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 354.436 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 49 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KDWSFY _entity_poly.pdbx_seq_one_letter_code_can KDWSFY _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' PE4 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ASP n 1 3 TRP n 1 4 SER n 1 5 PHE n 1 6 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic peptide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PE4 non-polymer . '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 'POLYETHYLENE GLYCOL PEG4000' 'C16 H34 O8' 354.436 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 TYR 6 6 6 TYR TYR A . n B 1 1 LYS 1 1 1 LYS LYS B . n B 1 2 ASP 2 2 2 ASP ASP B . n B 1 3 TRP 3 3 3 TRP TRP B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 TYR 6 6 6 TYR TYR B . n C 1 1 LYS 1 1 1 LYS LYS C . n C 1 2 ASP 2 2 2 ASP ASP C . n C 1 3 TRP 3 3 3 TRP TRP C . n C 1 4 SER 4 4 4 SER SER C . n C 1 5 PHE 5 5 5 PHE PHE C . n C 1 6 TYR 6 6 6 TYR TYR C . n D 1 1 LYS 1 1 1 LYS LYS D . n D 1 2 ASP 2 2 2 ASP ASP D . n D 1 3 TRP 3 3 3 TRP TRP D . n D 1 4 SER 4 4 4 SER SER D . n D 1 5 PHE 5 5 5 PHE PHE D . n D 1 6 TYR 6 6 6 TYR TYR D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PE4 1 101 6061 PE4 PE4 B . F 3 NA 1 102 1 NA NA B . G 2 PE4 1 101 6061 PE4 PE4 C . H 4 HOH 1 101 8 HOH HOH A . H 4 HOH 2 102 14 HOH HOH A . H 4 HOH 3 103 18 HOH HOH A . H 4 HOH 4 104 22 HOH HOH A . H 4 HOH 5 105 26 HOH HOH A . H 4 HOH 6 106 28 HOH HOH A . H 4 HOH 7 107 30 HOH HOH A . H 4 HOH 8 108 39 HOH HOH A . H 4 HOH 9 109 41 HOH HOH A . H 4 HOH 10 110 50 HOH HOH A . H 4 HOH 11 111 52 HOH HOH A . H 4 HOH 12 112 56 HOH HOH A . I 4 HOH 1 201 3 HOH HOH B . I 4 HOH 2 202 5 HOH HOH B . I 4 HOH 3 203 12 HOH HOH B . I 4 HOH 4 204 17 HOH HOH B . I 4 HOH 5 205 31 HOH HOH B . I 4 HOH 6 206 32 HOH HOH B . I 4 HOH 7 207 33 HOH HOH B . I 4 HOH 8 208 36 HOH HOH B . I 4 HOH 9 209 43 HOH HOH B . I 4 HOH 10 210 45 HOH HOH B . I 4 HOH 11 211 47 HOH HOH B . I 4 HOH 12 212 48 HOH HOH B . I 4 HOH 13 213 51 HOH HOH B . J 4 HOH 1 201 1 HOH HOH C . J 4 HOH 2 202 4 HOH HOH C . J 4 HOH 3 203 7 HOH HOH C . J 4 HOH 4 204 13 HOH HOH C . J 4 HOH 5 205 15 HOH HOH C . J 4 HOH 6 206 16 HOH HOH C . J 4 HOH 7 207 21 HOH HOH C . J 4 HOH 8 208 23 HOH HOH C . J 4 HOH 9 209 24 HOH HOH C . J 4 HOH 10 210 29 HOH HOH C . J 4 HOH 11 211 44 HOH HOH C . J 4 HOH 12 212 46 HOH HOH C . J 4 HOH 13 213 10 HOH HOH C . K 4 HOH 1 101 2 HOH HOH D . K 4 HOH 2 102 6 HOH HOH D . K 4 HOH 3 103 9 HOH HOH D . K 4 HOH 4 104 11 HOH HOH D . K 4 HOH 5 105 20 HOH HOH D . K 4 HOH 6 106 34 HOH HOH D . K 4 HOH 7 107 42 HOH HOH D . K 4 HOH 8 108 49 HOH HOH D . K 4 HOH 9 109 53 HOH HOH D . K 4 HOH 10 110 54 HOH HOH D . K 4 HOH 11 111 55 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B PE4 101 ? O1 ? E PE4 1 O1 2 1 N 1 B PE4 101 ? C1 ? E PE4 1 C1 3 1 N 1 B PE4 101 ? C2 ? E PE4 1 C2 4 1 N 1 B PE4 101 ? O7 ? E PE4 1 O7 5 1 N 1 B PE4 101 ? C13 ? E PE4 1 C13 6 1 N 1 B PE4 101 ? C14 ? E PE4 1 C14 7 1 N 1 B PE4 101 ? O8 ? E PE4 1 O8 8 1 N 1 B PE4 101 ? C15 ? E PE4 1 C15 9 1 N 1 B PE4 101 ? C16 ? E PE4 1 C16 10 1 N 1 C PE4 101 ? O1 ? G PE4 1 O1 11 1 N 1 C PE4 101 ? C1 ? G PE4 1 C1 12 1 N 1 C PE4 101 ? C2 ? G PE4 1 C2 13 1 N 1 C PE4 101 ? O7 ? G PE4 1 O7 14 1 N 1 C PE4 101 ? C13 ? G PE4 1 C13 15 1 N 1 C PE4 101 ? C14 ? G PE4 1 C14 16 1 N 1 C PE4 101 ? O8 ? G PE4 1 O8 17 1 N 1 C PE4 101 ? C15 ? G PE4 1 C15 18 1 N 1 C PE4 101 ? C16 ? G PE4 1 C16 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.7_650 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 62.370 _cell.length_b 62.370 _cell.length_c 11.730 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4E0K _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 4E0K _symmetry.Int_Tables_number 169 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4E0K _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.pdbx_details '0.1M BIS-TRIS PROPANE pH 6.5, 0.2 M SODIUM FLUORIDE, 20% (w/v) PEG 3350, vapor diffusion, hanging drop, temperature 290K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-12-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97911 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 0.97911 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 4E0K _reflns.d_resolution_high 0.970 _reflns.number_obs ? _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_netI_over_sigmaI 12.660 _reflns.percent_possible_obs 99.300 _reflns.B_iso_Wilson_estimate 9.162 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 14.9810 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 0.970 1.000 5383 ? 2168 0.448 2.420 ? ? ? ? ? 97.400 1 1 1.000 1.020 5490 ? 2173 0.340 3.080 ? ? ? ? ? 99.900 2 1 1.020 1.050 5435 ? 2097 0.262 3.820 ? ? ? ? ? 98.500 3 1 1.050 1.080 5364 ? 2010 0.180 4.890 ? ? ? ? ? 97.900 4 1 1.080 1.120 5159 ? 1944 0.147 5.690 ? ? ? ? ? 100.000 5 1 1.120 1.160 5411 ? 1981 0.122 6.680 ? ? ? ? ? 99.300 6 1 1.160 1.200 5033 ? 1795 0.110 7.220 ? ? ? ? ? 98.500 7 1 1.200 1.250 9045 ? 1788 0.144 9.170 ? ? ? ? ? 100.000 8 1 1.250 1.310 11764 ? 1769 0.140 11.090 ? ? ? ? ? 100.000 9 1 1.310 1.370 10607 ? 1583 0.120 13.160 ? ? ? ? ? 100.000 10 1 1.370 1.450 10676 ? 1599 0.102 15.660 ? ? ? ? ? 100.000 11 1 1.450 1.530 9680 ? 1437 0.088 18.100 ? ? ? ? ? 100.000 12 1 1.530 1.640 9283 ? 1400 0.080 20.790 ? ? ? ? ? 100.000 13 1 1.640 1.770 8510 ? 1286 0.071 23.720 ? ? ? ? ? 100.000 14 1 1.770 1.940 8047 ? 1224 0.067 26.120 ? ? ? ? ? 100.000 15 1 1.940 2.170 6712 ? 1039 0.062 29.010 ? ? ? ? ? 100.000 16 1 2.170 2.510 6277 ? 949 0.058 29.890 ? ? ? ? ? 100.000 17 1 2.510 3.070 5165 ? 806 0.060 31.340 ? ? ? ? ? 99.800 18 1 3.070 4.340 3330 ? 599 0.046 31.900 ? ? ? ? ? 98.200 19 1 4.340 ? 1568 ? 326 0.043 31.180 ? ? ? ? ? 95.000 20 1 # _refine.entry_id 4E0K _refine.ls_d_res_high 0.9700 _refine.ls_d_res_low 14.9810 _refine.pdbx_ls_sigma_F 2.010 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8400 _refine.ls_number_reflns_obs 15997 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1138 _refine.ls_R_factor_R_work 0.1119 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1311 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_number_reflns_R_free 1601 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 10.9748 _refine.solvent_model_param_bsol 38.5410 _refine.solvent_model_param_ksol 0.4070 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.2207 _refine.aniso_B[2][2] 0.2207 _refine.aniso_B[3][3] -0.4415 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.0600 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 0.9000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.7700 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9532 _refine.B_iso_max 48.940 _refine.B_iso_min 1.730 _refine.pdbx_overall_phase_error 9.1500 _refine.occupancy_max 1.000 _refine.occupancy_min 0.130 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 244 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 324 _refine_hist.d_res_high 0.9700 _refine_hist.d_res_low 14.9810 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 369 0.010 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 495 1.417 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 37 0.095 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 58 0.009 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 163 19.613 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 0.9703 1.0016 11 99.0000 1251 . 0.1495 0.1713 . 140 . 1391 . . 'X-RAY DIFFRACTION' 1.0016 1.0374 11 100.0000 1303 . 0.1342 0.1571 . 144 . 1447 . . 'X-RAY DIFFRACTION' 1.0374 1.0789 11 100.0000 1301 . 0.1072 0.1138 . 145 . 1446 . . 'X-RAY DIFFRACTION' 1.0789 1.1280 11 100.0000 1278 . 0.0908 0.1088 . 142 . 1420 . . 'X-RAY DIFFRACTION' 1.1280 1.1874 11 100.0000 1299 . 0.0891 0.1048 . 144 . 1443 . . 'X-RAY DIFFRACTION' 1.1874 1.2618 11 100.0000 1291 . 0.0941 0.1198 . 144 . 1435 . . 'X-RAY DIFFRACTION' 1.2618 1.3592 11 100.0000 1316 . 0.0961 0.1238 . 146 . 1462 . . 'X-RAY DIFFRACTION' 1.3592 1.4958 11 100.0000 1314 . 0.0982 0.1029 . 146 . 1460 . . 'X-RAY DIFFRACTION' 1.4958 1.7120 11 100.0000 1320 . 0.1003 0.1325 . 147 . 1467 . . 'X-RAY DIFFRACTION' 1.7120 2.1559 11 100.0000 1330 . 0.1075 0.1349 . 147 . 1477 . . 'X-RAY DIFFRACTION' 2.1559 14.9826 11 99.0000 1393 . 0.1304 0.1445 . 156 . 1549 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4E0K _struct.title 'Crystal Structure of the amyloid-fibril forming peptide KDWSFY derived from human Beta 2 Microglobulin (58-63)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E0K _struct_keywords.text 'amyloid, out-of-register, fiber-forming, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4E0K _struct_ref.pdbx_db_accession 4E0K _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E0K A 1 ? 6 ? 4E0K 1 ? 6 ? 1 6 2 1 4E0K B 1 ? 6 ? 4E0K 1 ? 6 ? 1 6 3 1 4E0K C 1 ? 6 ? 4E0K 1 ? 6 ? 1 6 4 1 4E0K D 1 ? 6 ? 4E0K 1 ? 6 ? 1 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 890 ? 1 MORE -9 ? 1 'SSA (A^2)' 2030 ? 2 'ABSA (A^2)' 690 ? 2 MORE -5 ? 2 'SSA (A^2)' 2120 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,H,I 2 1 C,D,G,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 2 _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id NA _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.831 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 2 ? PHE A 5 ? ASP A 2 PHE A 5 A 2 TRP B 3 ? TYR B 6 ? TRP B 3 TYR B 6 B 1 TRP C 3 ? PHE C 5 ? TRP C 3 PHE C 5 B 2 TRP D 3 ? PHE D 5 ? TRP D 3 PHE D 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 2 ? N ASP A 2 O TYR B 6 ? O TYR B 6 B 1 2 N SER C 4 ? N SER C 4 O SER D 4 ? O SER D 4 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B PE4 101 ? 14 'BINDING SITE FOR RESIDUE PE4 B 101' AC2 Software B NA 102 ? 5 'BINDING SITE FOR RESIDUE NA B 102' AC3 Software C PE4 101 ? 10 'BINDING SITE FOR RESIDUE PE4 C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TRP A 3 ? TRP A 3 . ? 6_555 ? 2 AC1 14 TYR A 6 ? TYR A 6 . ? 1_556 ? 3 AC1 14 HOH H . ? HOH A 103 . ? 6_555 ? 4 AC1 14 TRP B 3 ? TRP B 3 . ? 6_555 ? 5 AC1 14 PHE B 5 ? PHE B 5 . ? 6_554 ? 6 AC1 14 TYR B 6 ? TYR B 6 . ? 1_555 ? 7 AC1 14 HOH I . ? HOH B 203 . ? 1_555 ? 8 AC1 14 HOH I . ? HOH B 207 . ? 1_555 ? 9 AC1 14 HOH I . ? HOH B 208 . ? 1_556 ? 10 AC1 14 HOH I . ? HOH B 208 . ? 1_555 ? 11 AC1 14 TRP C 3 ? TRP C 3 . ? 1_556 ? 12 AC1 14 TRP C 3 ? TRP C 3 . ? 1_555 ? 13 AC1 14 TRP D 3 ? TRP D 3 . ? 1_555 ? 14 AC1 14 PHE D 5 ? PHE D 5 . ? 1_556 ? 15 AC2 5 PHE A 5 ? PHE A 5 . ? 1_556 ? 16 AC2 5 ASP B 2 ? ASP B 2 . ? 1_555 ? 17 AC2 5 TRP B 3 ? TRP B 3 . ? 1_555 ? 18 AC2 5 LYS D 1 ? LYS D 1 . ? 5_554 ? 19 AC2 5 HOH K . ? HOH D 109 . ? 5_554 ? 20 AC3 10 TYR C 6 ? TYR C 6 . ? 3_544 ? 21 AC3 10 TYR C 6 ? TYR C 6 . ? 2_444 ? 22 AC3 10 TYR C 6 ? TYR C 6 . ? 2_445 ? 23 AC3 10 HOH J . ? HOH C 206 . ? 3_544 ? 24 AC3 10 HOH J . ? HOH C 206 . ? 3_543 ? 25 AC3 10 HOH J . ? HOH C 206 . ? 1_554 ? 26 AC3 10 HOH J . ? HOH C 206 . ? 2_444 ? 27 AC3 10 TYR D 6 ? TYR D 6 . ? 3_545 ? 28 AC3 10 TYR D 6 ? TYR D 6 . ? 2_445 ? 29 AC3 10 TYR D 6 ? TYR D 6 . ? 3_544 ? # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 0.970 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 29973 _diffrn_reflns.pdbx_Rmerge_I_obs 0.069 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_percent_possible_obs 99.30 _diffrn_reflns.number 137939 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.07 4.34 599 ? 0.046 ? ? ? 98.20 1 2.51 3.07 806 ? 0.060 ? ? ? 99.80 1 2.17 2.51 949 ? 0.058 ? ? ? 100.00 1 1.94 2.17 1039 ? 0.062 ? ? ? 100.00 1 1.77 1.94 1224 ? 0.067 ? ? ? 100.00 1 1.64 1.77 1286 ? 0.071 ? ? ? 100.00 1 1.53 1.64 1400 ? 0.080 ? ? ? 100.00 1 1.45 1.53 1437 ? 0.088 ? ? ? 100.00 1 1.37 1.45 1599 ? 0.102 ? ? ? 100.00 1 1.31 1.37 1583 ? 0.120 ? ? ? 100.00 1 1.25 1.31 1769 ? 0.140 ? ? ? 100.00 1 1.20 1.25 1788 ? 0.144 ? ? ? 100.00 1 1.16 1.20 1795 ? 0.110 ? ? ? 98.50 1 1.12 1.16 1981 ? 0.122 ? ? ? 99.30 1 1.08 1.12 1944 ? 0.147 ? ? ? 100.00 1 1.05 1.08 2010 ? 0.180 ? ? ? 97.90 1 1.02 1.05 2097 ? 0.262 ? ? ? 98.50 1 1.00 1.02 2173 ? 0.340 ? ? ? 99.90 1 0.97 1.00 2168 ? 0.448 ? ? ? 97.40 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 HOH O O N N 17 HOH H1 H N N 18 HOH H2 H N N 19 LYS N N N N 20 LYS CA C N S 21 LYS C C N N 22 LYS O O N N 23 LYS CB C N N 24 LYS CG C N N 25 LYS CD C N N 26 LYS CE C N N 27 LYS NZ N N N 28 LYS OXT O N N 29 LYS H H N N 30 LYS H2 H N N 31 LYS HA H N N 32 LYS HB2 H N N 33 LYS HB3 H N N 34 LYS HG2 H N N 35 LYS HG3 H N N 36 LYS HD2 H N N 37 LYS HD3 H N N 38 LYS HE2 H N N 39 LYS HE3 H N N 40 LYS HZ1 H N N 41 LYS HZ2 H N N 42 LYS HZ3 H N N 43 LYS HXT H N N 44 NA NA NA N N 45 PE4 O1 O N N 46 PE4 C1 C N N 47 PE4 C2 C N N 48 PE4 O2 O N N 49 PE4 C3 C N N 50 PE4 C4 C N N 51 PE4 O3 O N N 52 PE4 C5 C N N 53 PE4 C6 C N N 54 PE4 O4 O N N 55 PE4 C7 C N N 56 PE4 C8 C N N 57 PE4 O5 O N N 58 PE4 C9 C N N 59 PE4 C10 C N N 60 PE4 O6 O N N 61 PE4 C11 C N N 62 PE4 C12 C N N 63 PE4 O7 O N N 64 PE4 C13 C N N 65 PE4 C14 C N N 66 PE4 O8 O N N 67 PE4 C15 C N N 68 PE4 C16 C N N 69 PE4 HO1 H N N 70 PE4 H11 H N N 71 PE4 H12 H N N 72 PE4 H21 H N N 73 PE4 H22 H N N 74 PE4 H31 H N N 75 PE4 H32 H N N 76 PE4 H41 H N N 77 PE4 H42 H N N 78 PE4 H51 H N N 79 PE4 H52 H N N 80 PE4 H61 H N N 81 PE4 H62 H N N 82 PE4 H71 H N N 83 PE4 H72 H N N 84 PE4 H81 H N N 85 PE4 H82 H N N 86 PE4 H91 H N N 87 PE4 H92 H N N 88 PE4 H101 H N N 89 PE4 H102 H N N 90 PE4 H111 H N N 91 PE4 H112 H N N 92 PE4 H121 H N N 93 PE4 H122 H N N 94 PE4 H131 H N N 95 PE4 H132 H N N 96 PE4 H141 H N N 97 PE4 H142 H N N 98 PE4 H151 H N N 99 PE4 H152 H N N 100 PE4 H161 H N N 101 PE4 H162 H N N 102 PE4 H163 H N N 103 PHE N N N N 104 PHE CA C N S 105 PHE C C N N 106 PHE O O N N 107 PHE CB C N N 108 PHE CG C Y N 109 PHE CD1 C Y N 110 PHE CD2 C Y N 111 PHE CE1 C Y N 112 PHE CE2 C Y N 113 PHE CZ C Y N 114 PHE OXT O N N 115 PHE H H N N 116 PHE H2 H N N 117 PHE HA H N N 118 PHE HB2 H N N 119 PHE HB3 H N N 120 PHE HD1 H N N 121 PHE HD2 H N N 122 PHE HE1 H N N 123 PHE HE2 H N N 124 PHE HZ H N N 125 PHE HXT H N N 126 SER N N N N 127 SER CA C N S 128 SER C C N N 129 SER O O N N 130 SER CB C N N 131 SER OG O N N 132 SER OXT O N N 133 SER H H N N 134 SER H2 H N N 135 SER HA H N N 136 SER HB2 H N N 137 SER HB3 H N N 138 SER HG H N N 139 SER HXT H N N 140 TRP N N N N 141 TRP CA C N S 142 TRP C C N N 143 TRP O O N N 144 TRP CB C N N 145 TRP CG C Y N 146 TRP CD1 C Y N 147 TRP CD2 C Y N 148 TRP NE1 N Y N 149 TRP CE2 C Y N 150 TRP CE3 C Y N 151 TRP CZ2 C Y N 152 TRP CZ3 C Y N 153 TRP CH2 C Y N 154 TRP OXT O N N 155 TRP H H N N 156 TRP H2 H N N 157 TRP HA H N N 158 TRP HB2 H N N 159 TRP HB3 H N N 160 TRP HD1 H N N 161 TRP HE1 H N N 162 TRP HE3 H N N 163 TRP HZ2 H N N 164 TRP HZ3 H N N 165 TRP HH2 H N N 166 TRP HXT H N N 167 TYR N N N N 168 TYR CA C N S 169 TYR C C N N 170 TYR O O N N 171 TYR CB C N N 172 TYR CG C Y N 173 TYR CD1 C Y N 174 TYR CD2 C Y N 175 TYR CE1 C Y N 176 TYR CE2 C Y N 177 TYR CZ C Y N 178 TYR OH O N N 179 TYR OXT O N N 180 TYR H H N N 181 TYR H2 H N N 182 TYR HA H N N 183 TYR HB2 H N N 184 TYR HB3 H N N 185 TYR HD1 H N N 186 TYR HD2 H N N 187 TYR HE1 H N N 188 TYR HE2 H N N 189 TYR HH H N N 190 TYR HXT H N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 HOH O H1 sing N N 16 HOH O H2 sing N N 17 LYS N CA sing N N 18 LYS N H sing N N 19 LYS N H2 sing N N 20 LYS CA C sing N N 21 LYS CA CB sing N N 22 LYS CA HA sing N N 23 LYS C O doub N N 24 LYS C OXT sing N N 25 LYS CB CG sing N N 26 LYS CB HB2 sing N N 27 LYS CB HB3 sing N N 28 LYS CG CD sing N N 29 LYS CG HG2 sing N N 30 LYS CG HG3 sing N N 31 LYS CD CE sing N N 32 LYS CD HD2 sing N N 33 LYS CD HD3 sing N N 34 LYS CE NZ sing N N 35 LYS CE HE2 sing N N 36 LYS CE HE3 sing N N 37 LYS NZ HZ1 sing N N 38 LYS NZ HZ2 sing N N 39 LYS NZ HZ3 sing N N 40 LYS OXT HXT sing N N 41 PE4 O1 C1 sing N N 42 PE4 O1 HO1 sing N N 43 PE4 C1 C2 sing N N 44 PE4 C1 H11 sing N N 45 PE4 C1 H12 sing N N 46 PE4 C2 O2 sing N N 47 PE4 C2 H21 sing N N 48 PE4 C2 H22 sing N N 49 PE4 O2 C3 sing N N 50 PE4 C3 C4 sing N N 51 PE4 C3 H31 sing N N 52 PE4 C3 H32 sing N N 53 PE4 C4 O3 sing N N 54 PE4 C4 H41 sing N N 55 PE4 C4 H42 sing N N 56 PE4 O3 C5 sing N N 57 PE4 C5 C6 sing N N 58 PE4 C5 H51 sing N N 59 PE4 C5 H52 sing N N 60 PE4 C6 O4 sing N N 61 PE4 C6 H61 sing N N 62 PE4 C6 H62 sing N N 63 PE4 O4 C7 sing N N 64 PE4 C7 C8 sing N N 65 PE4 C7 H71 sing N N 66 PE4 C7 H72 sing N N 67 PE4 C8 O5 sing N N 68 PE4 C8 H81 sing N N 69 PE4 C8 H82 sing N N 70 PE4 O5 C9 sing N N 71 PE4 C9 C10 sing N N 72 PE4 C9 H91 sing N N 73 PE4 C9 H92 sing N N 74 PE4 C10 O6 sing N N 75 PE4 C10 H101 sing N N 76 PE4 C10 H102 sing N N 77 PE4 O6 C11 sing N N 78 PE4 C11 C12 sing N N 79 PE4 C11 H111 sing N N 80 PE4 C11 H112 sing N N 81 PE4 C12 O7 sing N N 82 PE4 C12 H121 sing N N 83 PE4 C12 H122 sing N N 84 PE4 O7 C13 sing N N 85 PE4 C13 C14 sing N N 86 PE4 C13 H131 sing N N 87 PE4 C13 H132 sing N N 88 PE4 C14 O8 sing N N 89 PE4 C14 H141 sing N N 90 PE4 C14 H142 sing N N 91 PE4 O8 C15 sing N N 92 PE4 C15 C16 sing N N 93 PE4 C15 H151 sing N N 94 PE4 C15 H152 sing N N 95 PE4 C16 H161 sing N N 96 PE4 C16 H162 sing N N 97 PE4 C16 H163 sing N N 98 PHE N CA sing N N 99 PHE N H sing N N 100 PHE N H2 sing N N 101 PHE CA C sing N N 102 PHE CA CB sing N N 103 PHE CA HA sing N N 104 PHE C O doub N N 105 PHE C OXT sing N N 106 PHE CB CG sing N N 107 PHE CB HB2 sing N N 108 PHE CB HB3 sing N N 109 PHE CG CD1 doub Y N 110 PHE CG CD2 sing Y N 111 PHE CD1 CE1 sing Y N 112 PHE CD1 HD1 sing N N 113 PHE CD2 CE2 doub Y N 114 PHE CD2 HD2 sing N N 115 PHE CE1 CZ doub Y N 116 PHE CE1 HE1 sing N N 117 PHE CE2 CZ sing Y N 118 PHE CE2 HE2 sing N N 119 PHE CZ HZ sing N N 120 PHE OXT HXT sing N N 121 SER N CA sing N N 122 SER N H sing N N 123 SER N H2 sing N N 124 SER CA C sing N N 125 SER CA CB sing N N 126 SER CA HA sing N N 127 SER C O doub N N 128 SER C OXT sing N N 129 SER CB OG sing N N 130 SER CB HB2 sing N N 131 SER CB HB3 sing N N 132 SER OG HG sing N N 133 SER OXT HXT sing N N 134 TRP N CA sing N N 135 TRP N H sing N N 136 TRP N H2 sing N N 137 TRP CA C sing N N 138 TRP CA CB sing N N 139 TRP CA HA sing N N 140 TRP C O doub N N 141 TRP C OXT sing N N 142 TRP CB CG sing N N 143 TRP CB HB2 sing N N 144 TRP CB HB3 sing N N 145 TRP CG CD1 doub Y N 146 TRP CG CD2 sing Y N 147 TRP CD1 NE1 sing Y N 148 TRP CD1 HD1 sing N N 149 TRP CD2 CE2 doub Y N 150 TRP CD2 CE3 sing Y N 151 TRP NE1 CE2 sing Y N 152 TRP NE1 HE1 sing N N 153 TRP CE2 CZ2 sing Y N 154 TRP CE3 CZ3 doub Y N 155 TRP CE3 HE3 sing N N 156 TRP CZ2 CH2 doub Y N 157 TRP CZ2 HZ2 sing N N 158 TRP CZ3 CH2 sing Y N 159 TRP CZ3 HZ3 sing N N 160 TRP CH2 HH2 sing N N 161 TRP OXT HXT sing N N 162 TYR N CA sing N N 163 TYR N H sing N N 164 TYR N H2 sing N N 165 TYR CA C sing N N 166 TYR CA CB sing N N 167 TYR CA HA sing N N 168 TYR C O doub N N 169 TYR C OXT sing N N 170 TYR CB CG sing N N 171 TYR CB HB2 sing N N 172 TYR CB HB3 sing N N 173 TYR CG CD1 doub Y N 174 TYR CG CD2 sing Y N 175 TYR CD1 CE1 sing Y N 176 TYR CD1 HD1 sing N N 177 TYR CD2 CE2 doub Y N 178 TYR CD2 HD2 sing N N 179 TYR CE1 CZ doub Y N 180 TYR CE1 HE1 sing N N 181 TYR CE2 CZ sing Y N 182 TYR CE2 HE2 sing N N 183 TYR CZ OH sing N N 184 TYR OH HH sing N N 185 TYR OXT HXT sing N N 186 # _atom_sites.entry_id 4E0K _atom_sites.fract_transf_matrix[1][1] 0.016033 _atom_sites.fract_transf_matrix[1][2] 0.009257 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018514 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.085251 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N NA O # loop_