data_4E58 # _entry.id 4E58 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E58 pdb_00004e58 10.2210/pdb4e58/pdb NDB NA1665 ? ? RCSB RCSB071184 ? ? WWPDB D_1000071184 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4E59 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4E58 _pdbx_database_status.recvd_initial_deposition_date 2012-03-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kiliszek, A.' 1 'Kierzek, R.' 2 'Krzyzosiak, W.J.' 3 'Rypniewski, R.' 4 # _citation.id primary _citation.title 'Crystallographic characterization of CCG repeats.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 8155 _citation.page_last 8162 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22718980 _citation.pdbx_database_id_DOI 10.1093/nar/gks557 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Kierzek, R.' 2 ? primary 'Krzyzosiak, W.J.' 3 ? primary 'Rypniewski, W.' 4 ? # _cell.entry_id 4E58 _cell.length_a 42.016 _cell.length_b 42.016 _cell.length_c 81.656 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E58 _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA duplex containing CCG repeats' 2528.579 3 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GCC(LCG)CCGC' _entity_poly.pdbx_seq_one_letter_code_can GCCGCCGC _entity_poly.pdbx_strand_id C,E,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 LCG n 1 5 C n 1 6 C n 1 7 G n 1 8 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'Similar sequences occur in mRNA in humans' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4E58 _struct_ref.pdbx_db_accession 4E58 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GCCGCCGC _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E58 C 1 ? 8 ? 4E58 1 ? 8 ? 1 8 2 1 4E58 E 1 ? 8 ? 4E58 1 ? 8 ? 1 8 3 1 4E58 D 1 ? 8 ? 4E58 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 # _exptl.entry_id 4E58 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 292.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details 'MES, MgCl2 and Li2SO4, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 292.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-03-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9148 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9148 # _reflns.entry_id 4E58 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.95 _reflns.number_obs 5762 _reflns.number_all 5762 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 23.7 _reflns.B_iso_Wilson_estimate 50.7 _reflns.pdbx_redundancy 28.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 1.98 _reflns_shell.percent_possible_all 97.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.673 _reflns_shell.meanI_over_sigI_obs 2.175 _reflns_shell.pdbx_redundancy 15.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 273 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4E58 _refine.ls_number_reflns_obs 5717 _refine.ls_number_reflns_all 5717 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.790 _refine.ls_d_res_high 1.952 _refine.ls_percent_reflns_obs 99.46 _refine.ls_R_factor_obs 0.2580 _refine.ls_R_factor_all 0.2580 _refine.ls_R_factor_R_work 0.2580 _refine.ls_R_factor_R_free 0.3008 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 100.00 _refine.ls_number_reflns_R_free 562 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 49.43 _refine.aniso_B[1][1] 6.3525 _refine.aniso_B[2][2] 6.3525 _refine.aniso_B[3][3] -12.7050 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.348 _refine.solvent_model_param_bsol 36.220 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.49 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3GLP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.36 _refine.pdbx_overall_phase_error 31.83 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 510 _refine_hist.d_res_high 1.952 _refine_hist.d_res_low 18.790 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.010 ? ? 549 ? 'X-RAY DIFFRACTION' f_angle_d 1.230 ? ? 856 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.246 ? ? 252 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.066 ? ? 110 ? 'X-RAY DIFFRACTION' f_plane_restr 0.012 ? ? 23 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.952 _refine_ls_shell.d_res_low 2.1486 _refine_ls_shell.number_reflns_R_work 179 _refine_ls_shell.R_factor_R_work 0.3766 _refine_ls_shell.percent_reflns_obs 97.00 _refine_ls_shell.R_factor_R_free 0.4417 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 129 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1238 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4E58 _struct.title 'Crystal structure of GCC(LCG)CCGC duplex containing LNA residue' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E58 _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;CCG repeats, 5' slippery duplexes, X-linked mental retardation, Huntington's disease, myotonic dystrophy type 1, LNA Guanosine, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? C C 3 C LCG 4 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale2 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A C 5 P ? ? C LCG 4 C C 5 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale3 covale both ? B C 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? E C 3 E LCG 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B C 5 P ? ? E LCG 4 E C 5 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale5 covale both ? C C 3 "O3'" ? ? ? 1_555 C LCG 4 P ? ? D C 3 D LCG 4 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale6 covale both ? C LCG 4 "O3'" ? ? ? 1_555 C C 5 P ? ? D LCG 4 D C 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A C 3 N3 ? ? ? 1_555 C G 7 N1 ? ? C C 3 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 3 N4 ? ? ? 1_555 C G 7 O6 ? ? C C 3 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 3 O2 ? ? ? 1_555 C G 7 N2 ? ? C C 3 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 C C 6 N3 ? ? C LCG 4 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 C C 6 O2 ? ? C LCG 4 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 C C 6 N4 ? ? C LCG 4 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 5 N4 ? ? ? 1_555 C LCG 4 O6 ? ? C C 5 D LCG 4 1_555 ? ? ? ? ? ? 'C-LCG PAIR' ? ? ? hydrog8 hydrog ? ? A C 5 N3 ? ? ? 1_555 C C 5 N4 ? ? C C 5 D C 5 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog9 hydrog ? ? A C 6 N3 ? ? ? 1_555 C LCG 4 N1 ? ? C C 6 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N4 ? ? ? 1_555 C LCG 4 O6 ? ? C C 6 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 O2 ? ? ? 1_555 C LCG 4 N2 ? ? C C 6 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 N1 ? ? ? 1_555 C C 3 N3 ? ? C G 7 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N2 ? ? ? 1_555 C C 3 O2 ? ? C G 7 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 O6 ? ? ? 1_555 C C 3 N4 ? ? C G 7 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 1 N1 ? ? ? 1_555 C C 2 N3 ? ? E G 1 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 1 N2 ? ? ? 1_555 C C 2 O2 ? ? E G 1 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 1 O6 ? ? ? 1_555 C C 2 N4 ? ? E G 1 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B C 2 N3 ? ? ? 1_555 C G 1 N1 ? ? E C 2 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 2 N4 ? ? ? 1_555 C G 1 O6 ? ? E C 2 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 2 O2 ? ? ? 1_555 C G 1 N2 ? ? E C 2 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C SO4 101 ? 3 'BINDING SITE FOR RESIDUE SO4 C 101' AC2 Software D SO4 101 ? 4 'BINDING SITE FOR RESIDUE SO4 D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 C A 2 ? C C 2 . ? 1_555 ? 2 AC1 3 C A 3 ? C C 3 . ? 1_555 ? 3 AC1 3 HOH F . ? HOH C 202 . ? 1_555 ? 4 AC2 4 G A 7 ? G C 7 . ? 1_555 ? 5 AC2 4 C A 8 ? C C 8 . ? 1_555 ? 6 AC2 4 LCG C 4 ? LCG D 4 . ? 1_555 ? 7 AC2 4 C C 5 ? C D 5 . ? 1_555 ? # _database_PDB_matrix.entry_id 4E58 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4E58 _atom_sites.fract_transf_matrix[1][1] 0.023800 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023800 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012246 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G C . n A 1 2 C 2 2 2 C C C . n A 1 3 C 3 3 3 C C C . n A 1 4 LCG 4 4 4 LCG LCG C . n A 1 5 C 5 5 5 C C C . n A 1 6 C 6 6 6 C C C . n A 1 7 G 7 7 7 G G C . n A 1 8 C 8 8 8 C C C . n B 1 1 G 1 1 1 G G E . n B 1 2 C 2 2 2 C C E . n B 1 3 C 3 3 3 C C E . n B 1 4 LCG 4 4 4 LCG LCG E . n B 1 5 C 5 5 5 C C E . n B 1 6 C 6 6 6 C C E . n B 1 7 G 7 7 7 G G E . n B 1 8 C 8 8 8 C C E . n C 1 1 G 1 1 1 G G D . n C 1 2 C 2 2 2 C C D . n C 1 3 C 3 3 3 C C D . n C 1 4 LCG 4 4 4 LCG LCG D . n C 1 5 C 5 5 5 C C D . n C 1 6 C 6 6 6 C C D . n C 1 7 G 7 7 7 G G D . n C 1 8 C 8 8 8 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 1 101 1 SO4 SO4 C . E 2 SO4 1 101 2 SO4 SO4 D . F 3 HOH 1 201 3 HOH HOH C . F 3 HOH 2 202 6 HOH HOH C . F 3 HOH 3 203 11 HOH HOH C . F 3 HOH 4 204 13 HOH HOH C . G 3 HOH 1 101 2 HOH HOH E . G 3 HOH 2 102 7 HOH HOH E . G 3 HOH 3 103 10 HOH HOH E . G 3 HOH 4 104 16 HOH HOH E . G 3 HOH 5 105 17 HOH HOH E . G 3 HOH 6 106 18 HOH HOH E . G 3 HOH 7 107 19 HOH HOH E . H 3 HOH 1 201 8 HOH HOH D . H 3 HOH 2 202 9 HOH HOH D . H 3 HOH 3 203 15 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A LCG 4 C LCG 4 ? DG ? 2 B LCG 4 E LCG 4 ? DG ? 3 C LCG 4 D LCG 4 ? DG ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,H 2 1,2 B,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2380 ? 1 MORE -27 ? 1 'SSA (A^2)' 2840 ? 2 'ABSA (A^2)' 1750 ? 2 MORE 6 ? 2 'SSA (A^2)' 2820 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 20.4140000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id D _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 203 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-12 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entity_src_syn 2 2 'Structure model' software 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 2 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 2 'Structure model' '_software.name' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 E C 8 ? "C4'" ? B C 8 "C4'" 2 1 Y 1 E C 8 ? "O4'" ? B C 8 "O4'" 3 1 Y 1 E C 8 ? "C3'" ? B C 8 "C3'" 4 1 Y 1 E C 8 ? "O3'" ? B C 8 "O3'" 5 1 Y 1 E C 8 ? "C2'" ? B C 8 "C2'" 6 1 Y 1 E C 8 ? "O2'" ? B C 8 "O2'" 7 1 Y 1 E C 8 ? "C1'" ? B C 8 "C1'" 8 1 Y 1 E C 8 ? N1 ? B C 8 N1 9 1 Y 1 E C 8 ? C2 ? B C 8 C2 10 1 Y 1 E C 8 ? O2 ? B C 8 O2 11 1 Y 1 E C 8 ? N3 ? B C 8 N3 12 1 Y 1 E C 8 ? C4 ? B C 8 C4 13 1 Y 1 E C 8 ? N4 ? B C 8 N4 14 1 Y 1 E C 8 ? C5 ? B C 8 C5 15 1 Y 1 E C 8 ? C6 ? B C 8 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 LCG P P N N 77 LCG OP1 O N N 78 LCG "O5'" O N N 79 LCG "C5'" C N N 80 LCG "C3'" C N S 81 LCG "C6'" C N N 82 LCG N9 N Y N 83 LCG C8 C Y N 84 LCG C4 C Y N 85 LCG N7 N Y N 86 LCG C5 C Y N 87 LCG C6 C N N 88 LCG "C2'" C N R 89 LCG O6 O N N 90 LCG "C4'" C N R 91 LCG "C1'" C N R 92 LCG C2 C N N 93 LCG N1 N N N 94 LCG "O4'" O N N 95 LCG OP2 O N N 96 LCG N2 N N N 97 LCG N3 N N N 98 LCG "O2'" O N N 99 LCG "O3'" O N N 100 LCG OP3 O N N 101 LCG "H5'" H N N 102 LCG "H5''" H N N 103 LCG "H3'" H N N 104 LCG "H6'1" H N N 105 LCG "H6'2" H N N 106 LCG H8 H N N 107 LCG "H2'" H N N 108 LCG "H1'" H N N 109 LCG H1 H N N 110 LCG HOP2 H N N 111 LCG H21 H N N 112 LCG H22 H N N 113 LCG "HO3'" H N N 114 LCG HOP3 H N N 115 SO4 S S N N 116 SO4 O1 O N N 117 SO4 O2 O N N 118 SO4 O3 O N N 119 SO4 O4 O N N 120 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 LCG P OP1 doub N N 79 LCG P "O5'" sing N N 80 LCG P OP2 sing N N 81 LCG P OP3 sing N N 82 LCG "O5'" "C5'" sing N N 83 LCG "C5'" "C4'" sing N N 84 LCG "C5'" "H5'" sing N N 85 LCG "C5'" "H5''" sing N N 86 LCG "C3'" "C2'" sing N N 87 LCG "C3'" "C4'" sing N N 88 LCG "C3'" "O3'" sing N N 89 LCG "C3'" "H3'" sing N N 90 LCG "C6'" "C4'" sing N N 91 LCG "C6'" "O2'" sing N N 92 LCG "C6'" "H6'1" sing N N 93 LCG "C6'" "H6'2" sing N N 94 LCG N9 C8 sing Y N 95 LCG N9 C4 sing Y N 96 LCG N9 "C1'" sing N N 97 LCG C8 N7 doub Y N 98 LCG C8 H8 sing N N 99 LCG C4 C5 doub Y N 100 LCG C4 N3 sing N N 101 LCG N7 C5 sing Y N 102 LCG C5 C6 sing N N 103 LCG C6 O6 doub N N 104 LCG C6 N1 sing N N 105 LCG "C2'" "C1'" sing N N 106 LCG "C2'" "O2'" sing N N 107 LCG "C2'" "H2'" sing N N 108 LCG "C4'" "O4'" sing N N 109 LCG "C1'" "O4'" sing N N 110 LCG "C1'" "H1'" sing N N 111 LCG C2 N1 sing N N 112 LCG C2 N2 sing N N 113 LCG C2 N3 doub N N 114 LCG N1 H1 sing N N 115 LCG OP2 HOP2 sing N N 116 LCG N2 H21 sing N N 117 LCG N2 H22 sing N N 118 LCG "O3'" "HO3'" sing N N 119 LCG OP3 HOP3 sing N N 120 SO4 S O1 doub N N 121 SO4 S O2 doub N N 122 SO4 S O3 sing N N 123 SO4 S O4 sing N N 124 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4E58 'double helix' 4E58 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 3 1_555 C G 7 1_555 0.060 -0.100 0.234 -16.776 -1.190 -5.868 1 C_C3:G7_D C 3 ? D 7 ? 19 1 1 A LCG 4 1_555 C C 6 1_555 -0.304 -0.286 0.389 0.000 -14.025 -1.510 2 C_LCG4:C6_D C 4 ? D 6 ? 19 1 1 A C 5 1_555 C C 5 1_555 2.379 -0.959 0.252 -13.016 -20.467 -22.282 3 C_C5:C5_D C 5 ? D 5 ? ? ? 1 A C 6 1_555 C LCG 4 1_555 -0.228 -0.227 0.871 -11.228 -13.816 -0.632 4 C_C6:LCG4_D C 6 ? D 4 ? 19 1 1 A G 7 1_555 C C 3 1_555 -0.315 -0.089 0.313 23.169 2.798 -0.042 5 C_G7:C3_D C 7 ? D 3 ? 19 1 1 B G 1 1_555 C C 2 1_555 -0.174 -0.239 0.582 13.131 -9.890 -0.643 6 E_G1:C2_D E 1 ? D 2 ? 19 1 1 B C 2 1_555 C G 1 1_555 0.422 -0.207 0.208 0.797 -13.851 -1.178 7 E_C2:G1_D E 2 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 3 1_555 C G 7 1_555 A LCG 4 1_555 C C 6 1_555 0.854 -1.455 2.683 -0.600 15.046 28.637 -4.524 -1.612 1.708 28.098 1.120 32.281 1 CC_C3LCG4:C6G7_DD C 3 ? D 7 ? C 4 ? D 6 ? 1 A LCG 4 1_555 C C 6 1_555 A C 5 1_555 C C 5 1_555 -0.863 -1.628 3.647 -0.337 6.325 44.454 -2.753 1.098 3.402 8.310 0.443 44.880 2 CC_LCG4C5:C5C6_DD C 4 ? D 6 ? C 5 ? D 5 ? 1 A C 5 1_555 C C 5 1_555 A C 6 1_555 C LCG 4 1_555 1.070 -1.963 2.945 2.217 5.329 24.715 -5.781 -1.891 2.556 12.237 -5.091 25.370 3 CC_C5C6:LCG4C5_DD C 5 ? D 5 ? C 6 ? D 4 ? 1 A C 6 1_555 C LCG 4 1_555 A G 7 1_555 C C 3 1_555 -0.761 -1.356 2.329 1.547 10.259 14.104 -8.015 3.040 1.022 36.074 -5.440 17.493 4 CC_C6G7:C3LCG4_DD C 6 ? D 4 ? C 7 ? D 3 ? 1 A G 7 1_555 C C 3 1_555 B G 1 1_555 C C 2 1_555 -1.423 -0.276 3.456 -7.934 6.276 47.120 -0.874 1.068 3.575 7.747 9.793 48.133 5 CE_G7G1:C2C3_DD C 7 ? D 3 ? E 1 ? D 2 ? 1 B G 1 1_555 C C 2 1_555 B C 2 1_555 C G 1 1_555 0.141 -1.943 3.403 2.926 1.092 43.057 -2.752 0.105 3.357 1.486 -3.980 43.165 6 EE_G1C2:G1C2_DD E 1 ? D 2 ? E 2 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GLP _pdbx_initial_refinement_model.details 'PDB ENTRY 3GLP' #