data_4ESN # _entry.id 4ESN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ESN pdb_00004esn 10.2210/pdb4esn/pdb RCSB RCSB072019 ? ? WWPDB D_1000072019 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-416850 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4ESN _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (RUMGNA_02503) from Ruminococcus gnavus ATCC 29149 at 2.20 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4ESN _cell.length_a 39.854 _cell.length_b 63.090 _cell.length_c 67.526 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ESN _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 11676.683 2 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 354.436 1 ? ? ? ? 4 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQGAVVTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAK(MSE)EWADCPDQLCVHQKA ISRTGESIICLPNQVVVSVQGSKESELDGIVN ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGAVVTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKMEWADCPDQLCVHQKAISRTGESI ICLPNQVVVSVQGSKESELDGIVN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-416850 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 ALA n 1 21 VAL n 1 22 VAL n 1 23 THR n 1 24 VAL n 1 25 ASP n 1 26 GLY n 1 27 GLU n 1 28 VAL n 1 29 TYR n 1 30 GLY n 1 31 THR n 1 32 TYR n 1 33 SER n 1 34 LEU n 1 35 ALA n 1 36 LYS n 1 37 ASP n 1 38 GLN n 1 39 THR n 1 40 ILE n 1 41 GLU n 1 42 ILE n 1 43 GLN n 1 44 ASP n 1 45 GLY n 1 46 ASN n 1 47 ARG n 1 48 LEU n 1 49 ARG n 1 50 ILE n 1 51 GLN n 1 52 ASN n 1 53 GLY n 1 54 GLN n 1 55 ALA n 1 56 LYS n 1 57 MSE n 1 58 GLU n 1 59 TRP n 1 60 ALA n 1 61 ASP n 1 62 CYS n 1 63 PRO n 1 64 ASP n 1 65 GLN n 1 66 LEU n 1 67 CYS n 1 68 VAL n 1 69 HIS n 1 70 GLN n 1 71 LYS n 1 72 ALA n 1 73 ILE n 1 74 SER n 1 75 ARG n 1 76 THR n 1 77 GLY n 1 78 GLU n 1 79 SER n 1 80 ILE n 1 81 ILE n 1 82 CYS n 1 83 LEU n 1 84 PRO n 1 85 ASN n 1 86 GLN n 1 87 VAL n 1 88 VAL n 1 89 VAL n 1 90 SER n 1 91 VAL n 1 92 GLN n 1 93 GLY n 1 94 SER n 1 95 LYS n 1 96 GLU n 1 97 SER n 1 98 GLU n 1 99 LEU n 1 100 ASP n 1 101 GLY n 1 102 ILE n 1 103 VAL n 1 104 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name TBD _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RUMGNA_02503 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 29149' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ruminococcus gnavus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411470 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7B4L9_RUMGN _struct_ref.pdbx_db_accession A7B4L9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AVVTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKMEWADCPDQLCVHQKAISRTGESIICLPNQVVVSVQGSKESEL DGIVN ; _struct_ref.pdbx_align_begin 33 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ESN A 20 ? 104 ? A7B4L9 33 ? 117 ? 33 117 2 1 4ESN B 20 ? 104 ? A7B4L9 33 ? 117 ? 33 117 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ESN MSE A 1 ? UNP A7B4L9 ? ? 'expression tag' -18 1 1 4ESN GLY A 2 ? UNP A7B4L9 ? ? 'expression tag' -17 2 1 4ESN SER A 3 ? UNP A7B4L9 ? ? 'expression tag' -16 3 1 4ESN ASP A 4 ? UNP A7B4L9 ? ? 'expression tag' -15 4 1 4ESN LYS A 5 ? UNP A7B4L9 ? ? 'expression tag' -14 5 1 4ESN ILE A 6 ? UNP A7B4L9 ? ? 'expression tag' -13 6 1 4ESN HIS A 7 ? UNP A7B4L9 ? ? 'expression tag' -12 7 1 4ESN HIS A 8 ? UNP A7B4L9 ? ? 'expression tag' -11 8 1 4ESN HIS A 9 ? UNP A7B4L9 ? ? 'expression tag' -10 9 1 4ESN HIS A 10 ? UNP A7B4L9 ? ? 'expression tag' -9 10 1 4ESN HIS A 11 ? UNP A7B4L9 ? ? 'expression tag' -8 11 1 4ESN HIS A 12 ? UNP A7B4L9 ? ? 'expression tag' -7 12 1 4ESN GLU A 13 ? UNP A7B4L9 ? ? 'expression tag' -6 13 1 4ESN ASN A 14 ? UNP A7B4L9 ? ? 'expression tag' -5 14 1 4ESN LEU A 15 ? UNP A7B4L9 ? ? 'expression tag' -4 15 1 4ESN TYR A 16 ? UNP A7B4L9 ? ? 'expression tag' -3 16 1 4ESN PHE A 17 ? UNP A7B4L9 ? ? 'expression tag' -2 17 1 4ESN GLN A 18 ? UNP A7B4L9 ? ? 'expression tag' -1 18 1 4ESN GLY A 19 ? UNP A7B4L9 ? ? 'expression tag' 0 19 2 4ESN MSE B 1 ? UNP A7B4L9 ? ? 'expression tag' -18 20 2 4ESN GLY B 2 ? UNP A7B4L9 ? ? 'expression tag' -17 21 2 4ESN SER B 3 ? UNP A7B4L9 ? ? 'expression tag' -16 22 2 4ESN ASP B 4 ? UNP A7B4L9 ? ? 'expression tag' -15 23 2 4ESN LYS B 5 ? UNP A7B4L9 ? ? 'expression tag' -14 24 2 4ESN ILE B 6 ? UNP A7B4L9 ? ? 'expression tag' -13 25 2 4ESN HIS B 7 ? UNP A7B4L9 ? ? 'expression tag' -12 26 2 4ESN HIS B 8 ? UNP A7B4L9 ? ? 'expression tag' -11 27 2 4ESN HIS B 9 ? UNP A7B4L9 ? ? 'expression tag' -10 28 2 4ESN HIS B 10 ? UNP A7B4L9 ? ? 'expression tag' -9 29 2 4ESN HIS B 11 ? UNP A7B4L9 ? ? 'expression tag' -8 30 2 4ESN HIS B 12 ? UNP A7B4L9 ? ? 'expression tag' -7 31 2 4ESN GLU B 13 ? UNP A7B4L9 ? ? 'expression tag' -6 32 2 4ESN ASN B 14 ? UNP A7B4L9 ? ? 'expression tag' -5 33 2 4ESN LEU B 15 ? UNP A7B4L9 ? ? 'expression tag' -4 34 2 4ESN TYR B 16 ? UNP A7B4L9 ? ? 'expression tag' -3 35 2 4ESN PHE B 17 ? UNP A7B4L9 ? ? 'expression tag' -2 36 2 4ESN GLN B 18 ? UNP A7B4L9 ? ? 'expression tag' -1 37 2 4ESN GLY B 19 ? UNP A7B4L9 ? ? 'expression tag' 0 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PE4 non-polymer . '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 'POLYETHYLENE GLYCOL PEG4000' 'C16 H34 O8' 354.436 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4ESN # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.82 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 32.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.2M ammonium nitrate 20.0% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2012-01-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength 0.97915 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4ESN _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 28.580 _reflns.number_all 9044 _reflns.number_obs 9044 _reflns.pdbx_netI_over_sigmaI 11.500 _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 99.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.200 2.260 ? 4772 ? 0.695 1.1 0.695 ? 7.300 ? 656 99.000 1 1 2.260 2.320 ? 4532 ? 0.566 1.4 0.566 ? 7.300 ? 625 99.700 2 1 2.320 2.390 ? 4525 ? 0.514 1.5 0.514 ? 7.300 ? 621 99.400 3 1 2.390 2.460 ? 4313 ? 0.375 2.0 0.375 ? 7.300 ? 592 99.200 4 1 2.460 2.540 ? 4252 ? 0.323 2.4 0.323 ? 7.200 ? 591 99.400 5 1 2.540 2.630 ? 4056 ? 0.250 3.1 0.250 ? 7.200 ? 560 99.600 6 1 2.630 2.730 ? 3989 ? 0.183 4.1 0.183 ? 7.200 ? 551 99.400 7 1 2.730 2.840 ? 3855 ? 0.152 4.8 0.152 ? 7.200 ? 537 99.800 8 1 2.840 2.970 ? 3633 ? 0.133 5.4 0.133 ? 7.200 ? 505 99.700 9 1 2.970 3.110 ? 3503 ? 0.117 5.8 0.117 ? 7.100 ? 493 99.700 10 1 3.110 3.280 ? 3419 ? 0.091 7.0 0.091 ? 7.200 ? 475 99.800 11 1 3.280 3.480 ? 3130 ? 0.086 7.3 0.086 ? 7.100 ? 441 99.800 12 1 3.480 3.720 ? 2973 ? 0.076 8.4 0.076 ? 7.000 ? 423 99.800 13 1 3.720 4.020 ? 2792 ? 0.070 8.8 0.070 ? 7.000 ? 398 99.700 14 1 4.020 4.400 ? 2543 ? 0.059 10.1 0.059 ? 7.000 ? 364 99.900 15 1 4.400 4.920 ? 2286 ? 0.060 10.6 0.060 ? 6.900 ? 331 99.800 16 1 4.920 5.680 ? 2040 ? 0.066 10.0 0.066 ? 6.800 ? 302 99.900 17 1 5.680 6.960 ? 1673 ? 0.079 8.8 0.079 ? 6.600 ? 253 100.000 18 1 6.960 9.840 ? 1336 ? 0.056 10.6 0.056 ? 6.300 ? 212 99.300 19 1 9.840 28.580 ? 626 ? 0.061 10.2 0.061 ? 5.500 ? 114 90.300 20 1 # _refine.entry_id 4ESN _refine.ls_d_res_high 2.2000 _refine.ls_d_res_low 28.580 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.2400 _refine.ls_number_reflns_obs 9018 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. POLYETHYLENE GLYCOL (PE4) FROM THE CRYOPROTECTANT AND CL IONS FROM THE CRYSTALLIZATION CONDITION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 4. ZN ION WAS MODELED IN THE PUTATIVE ACTIVE CENTER OF EACH PROTOME BASED ON ANOMALOUS DIFFERENCE MAPS AND EXCITATION SCANS. 5. 11 C-TERMINAL RESIDUES OF A AND B MOLECULES WERE DISORDERED. 6. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS). ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1833 _refine.ls_R_factor_R_work 0.1820 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2070 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7800 _refine.ls_number_reflns_R_free 431 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 64.2073 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.1933 _refine.aniso_B[2][2] -8.3969 _refine.aniso_B[3][3] 7.2036 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9552 _refine.correlation_coeff_Fo_to_Fc_free 0.9477 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 144.050 _refine.B_iso_min 35.800 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4ESN _refine_analyze.Luzzati_coordinate_error_obs 0.339 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1178 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 1257 _refine_hist.d_res_high 2.2000 _refine_hist.d_res_low 28.580 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 608 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 42 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 179 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1244 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 0 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 169 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1432 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1244 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1685 1.170 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.110 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 3.210 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.2000 _refine_ls_shell.d_res_low 2.4600 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.2400 _refine_ls_shell.number_reflns_R_work 2370 _refine_ls_shell.R_factor_all 0.1997 _refine_ls_shell.R_factor_R_work 0.1977 _refine_ls_shell.R_factor_R_free 0.2388 _refine_ls_shell.percent_reflns_R_free 4.8200 _refine_ls_shell.number_reflns_R_free 120 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2490 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF1312 family protein (RUMGNA_02503) from Ruminococcus gnavus ATCC 29149 at 2.20 A resolution' _struct.entry_id 4ESN _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.text ;PROTEIN OF PF07009 FAMILY, DUF1312, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.entry_id 4ESN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 65 ? GLN A 70 ? GLN A 78 GLN A 83 1 ? 6 HELX_P HELX_P2 2 GLN B 65 ? GLN B 70 ? GLN B 78 GLN B 83 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 56 C ? ? ? 1_555 A MSE 57 N ? ? A LYS 69 A MSE 70 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 57 C ? ? ? 1_555 A GLU 58 N ? ? A MSE 70 A GLU 71 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? B LYS 56 C ? ? ? 1_555 B MSE 57 N ? ? B LYS 69 B MSE 70 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale4 covale both ? B MSE 57 C ? ? ? 1_555 B GLU 58 N ? ? B MSE 70 B GLU 71 1_555 ? ? ? ? ? ? ? 1.336 ? ? metalc1 metalc ? ? A CYS 62 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 75 A ZN 201 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc2 metalc ? ? A CYS 67 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 80 A ZN 201 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc3 metalc ? ? A CYS 82 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 95 A ZN 201 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc4 metalc ? ? C ZN . ZN ? ? ? 1_555 F HOH . O ? ? A ZN 201 A HOH 335 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc5 metalc ? ? B CYS 62 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 75 B ZN 201 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc6 metalc ? ? B CYS 67 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 80 B ZN 201 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc7 metalc ? ? B CYS 82 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 95 B ZN 201 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc8 metalc ? ? D ZN . ZN ? ? ? 1_555 G HOH . O ? ? B ZN 201 B HOH 318 1_555 ? ? ? ? ? ? ? 2.337 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 27 ? SER A 33 ? GLU A 40 SER A 46 A 2 GLY A 19 ? VAL A 24 ? GLY A 0 VAL A 37 A 3 VAL A 87 ? GLN A 92 ? VAL A 100 GLN A 105 A 4 SER A 79 ? CYS A 82 ? SER A 92 CYS A 95 B 1 GLN A 38 ? ILE A 42 ? GLN A 51 ILE A 55 B 2 ASN A 46 ? GLN A 51 ? ASN A 59 GLN A 64 B 3 GLN A 54 ? ALA A 60 ? GLN A 67 ALA A 73 C 1 GLU B 27 ? SER B 33 ? GLU B 40 SER B 46 C 2 GLY B 19 ? VAL B 24 ? GLY B 0 VAL B 37 C 3 VAL B 87 ? GLN B 92 ? VAL B 100 GLN B 105 C 4 SER B 79 ? CYS B 82 ? SER B 92 CYS B 95 D 1 GLN B 38 ? ILE B 42 ? GLN B 51 ILE B 55 D 2 ASN B 46 ? GLN B 51 ? ASN B 59 GLN B 64 D 3 GLN B 54 ? ALA B 60 ? GLN B 67 ALA B 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 29 ? O TYR A 42 N VAL A 22 ? N VAL A 35 A 2 3 N VAL A 21 ? N VAL A 34 O SER A 90 ? O SER A 103 A 3 4 O VAL A 89 ? O VAL A 102 N ILE A 80 ? N ILE A 93 B 1 2 N GLN A 38 ? N GLN A 51 O ILE A 50 ? O ILE A 63 B 2 3 N ARG A 49 ? N ARG A 62 O LYS A 56 ? O LYS A 69 C 1 2 O TYR B 29 ? O TYR B 42 N VAL B 22 ? N VAL B 35 C 2 3 N VAL B 21 ? N VAL B 34 O SER B 90 ? O SER B 103 C 3 4 O VAL B 89 ? O VAL B 102 N ILE B 80 ? N ILE B 93 D 1 2 N GLN B 38 ? N GLN B 51 O ILE B 50 ? O ILE B 63 D 2 3 N ARG B 49 ? N ARG B 62 O LYS B 56 ? O LYS B 69 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN A 201' AC2 Software B ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN B 201' AC3 Software B PE4 202 ? 11 'BINDING SITE FOR RESIDUE PE4 B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 62 ? CYS A 75 . ? 1_555 ? 2 AC1 4 CYS A 67 ? CYS A 80 . ? 1_555 ? 3 AC1 4 CYS A 82 ? CYS A 95 . ? 1_555 ? 4 AC1 4 HOH F . ? HOH A 335 . ? 1_555 ? 5 AC2 4 CYS B 62 ? CYS B 75 . ? 1_555 ? 6 AC2 4 CYS B 67 ? CYS B 80 . ? 1_555 ? 7 AC2 4 CYS B 82 ? CYS B 95 . ? 1_555 ? 8 AC2 4 HOH G . ? HOH B 318 . ? 1_555 ? 9 AC3 11 ASP A 37 ? ASP A 50 . ? 2_655 ? 10 AC3 11 GLN A 38 ? GLN A 51 . ? 2_655 ? 11 AC3 11 THR A 39 ? THR A 52 . ? 2_655 ? 12 AC3 11 GLU A 41 ? GLU A 54 . ? 2_655 ? 13 AC3 11 GLN A 43 ? GLN A 56 . ? 2_655 ? 14 AC3 11 TYR B 29 ? TYR B 42 . ? 1_555 ? 15 AC3 11 ASP B 37 ? ASP B 50 . ? 1_555 ? 16 AC3 11 GLN B 38 ? GLN B 51 . ? 1_555 ? 17 AC3 11 THR B 39 ? THR B 52 . ? 1_555 ? 18 AC3 11 GLU B 41 ? GLU B 54 . ? 1_555 ? 19 AC3 11 HOH G . ? HOH B 315 . ? 1_555 ? # _atom_sites.entry_id 4ESN _atom_sites.fract_transf_matrix[1][1] 0.025092 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015850 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014809 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 ? ? ? A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 ALA 20 33 33 ALA ALA A . n A 1 21 VAL 21 34 34 VAL VAL A . n A 1 22 VAL 22 35 35 VAL VAL A . n A 1 23 THR 23 36 36 THR THR A . n A 1 24 VAL 24 37 37 VAL VAL A . n A 1 25 ASP 25 38 38 ASP ASP A . n A 1 26 GLY 26 39 39 GLY GLY A . n A 1 27 GLU 27 40 40 GLU GLU A . n A 1 28 VAL 28 41 41 VAL VAL A . n A 1 29 TYR 29 42 42 TYR TYR A . n A 1 30 GLY 30 43 43 GLY GLY A . n A 1 31 THR 31 44 44 THR THR A . n A 1 32 TYR 32 45 45 TYR TYR A . n A 1 33 SER 33 46 46 SER SER A . n A 1 34 LEU 34 47 47 LEU LEU A . n A 1 35 ALA 35 48 48 ALA ALA A . n A 1 36 LYS 36 49 49 LYS LYS A . n A 1 37 ASP 37 50 50 ASP ASP A . n A 1 38 GLN 38 51 51 GLN GLN A . n A 1 39 THR 39 52 52 THR THR A . n A 1 40 ILE 40 53 53 ILE ILE A . n A 1 41 GLU 41 54 54 GLU GLU A . n A 1 42 ILE 42 55 55 ILE ILE A . n A 1 43 GLN 43 56 56 GLN GLN A . n A 1 44 ASP 44 57 57 ASP ASP A . n A 1 45 GLY 45 58 58 GLY GLY A . n A 1 46 ASN 46 59 59 ASN ASN A . n A 1 47 ARG 47 60 60 ARG ARG A . n A 1 48 LEU 48 61 61 LEU LEU A . n A 1 49 ARG 49 62 62 ARG ARG A . n A 1 50 ILE 50 63 63 ILE ILE A . n A 1 51 GLN 51 64 64 GLN GLN A . n A 1 52 ASN 52 65 65 ASN ASN A . n A 1 53 GLY 53 66 66 GLY GLY A . n A 1 54 GLN 54 67 67 GLN GLN A . n A 1 55 ALA 55 68 68 ALA ALA A . n A 1 56 LYS 56 69 69 LYS LYS A . n A 1 57 MSE 57 70 70 MSE MSE A . n A 1 58 GLU 58 71 71 GLU GLU A . n A 1 59 TRP 59 72 72 TRP TRP A . n A 1 60 ALA 60 73 73 ALA ALA A . n A 1 61 ASP 61 74 74 ASP ASP A . n A 1 62 CYS 62 75 75 CYS CYS A . n A 1 63 PRO 63 76 76 PRO PRO A . n A 1 64 ASP 64 77 77 ASP ASP A . n A 1 65 GLN 65 78 78 GLN GLN A . n A 1 66 LEU 66 79 79 LEU LEU A . n A 1 67 CYS 67 80 80 CYS CYS A . n A 1 68 VAL 68 81 81 VAL VAL A . n A 1 69 HIS 69 82 82 HIS HIS A . n A 1 70 GLN 70 83 83 GLN GLN A . n A 1 71 LYS 71 84 84 LYS LYS A . n A 1 72 ALA 72 85 85 ALA ALA A . n A 1 73 ILE 73 86 86 ILE ILE A . n A 1 74 SER 74 87 87 SER SER A . n A 1 75 ARG 75 88 88 ARG ARG A . n A 1 76 THR 76 89 89 THR THR A . n A 1 77 GLY 77 90 90 GLY GLY A . n A 1 78 GLU 78 91 91 GLU GLU A . n A 1 79 SER 79 92 92 SER SER A . n A 1 80 ILE 80 93 93 ILE ILE A . n A 1 81 ILE 81 94 94 ILE ILE A . n A 1 82 CYS 82 95 95 CYS CYS A . n A 1 83 LEU 83 96 96 LEU LEU A . n A 1 84 PRO 84 97 97 PRO PRO A . n A 1 85 ASN 85 98 98 ASN ASN A . n A 1 86 GLN 86 99 99 GLN GLN A . n A 1 87 VAL 87 100 100 VAL VAL A . n A 1 88 VAL 88 101 101 VAL VAL A . n A 1 89 VAL 89 102 102 VAL VAL A . n A 1 90 SER 90 103 103 SER SER A . n A 1 91 VAL 91 104 104 VAL VAL A . n A 1 92 GLN 92 105 105 GLN GLN A . n A 1 93 GLY 93 106 106 GLY GLY A . n A 1 94 SER 94 107 ? ? ? A . n A 1 95 LYS 95 108 ? ? ? A . n A 1 96 GLU 96 109 ? ? ? A . n A 1 97 SER 97 110 ? ? ? A . n A 1 98 GLU 98 111 ? ? ? A . n A 1 99 LEU 99 112 ? ? ? A . n A 1 100 ASP 100 113 ? ? ? A . n A 1 101 GLY 101 114 ? ? ? A . n A 1 102 ILE 102 115 ? ? ? A . n A 1 103 VAL 103 116 ? ? ? A . n A 1 104 ASN 104 117 ? ? ? A . n B 1 1 MSE 1 -18 ? ? ? B . n B 1 2 GLY 2 -17 ? ? ? B . n B 1 3 SER 3 -16 ? ? ? B . n B 1 4 ASP 4 -15 ? ? ? B . n B 1 5 LYS 5 -14 ? ? ? B . n B 1 6 ILE 6 -13 ? ? ? B . n B 1 7 HIS 7 -12 ? ? ? B . n B 1 8 HIS 8 -11 ? ? ? B . n B 1 9 HIS 9 -10 ? ? ? B . n B 1 10 HIS 10 -9 ? ? ? B . n B 1 11 HIS 11 -8 ? ? ? B . n B 1 12 HIS 12 -7 ? ? ? B . n B 1 13 GLU 13 -6 ? ? ? B . n B 1 14 ASN 14 -5 ? ? ? B . n B 1 15 LEU 15 -4 ? ? ? B . n B 1 16 TYR 16 -3 ? ? ? B . n B 1 17 PHE 17 -2 -2 PHE PHE B . n B 1 18 GLN 18 -1 -1 GLN GLN B . n B 1 19 GLY 19 0 0 GLY GLY B . n B 1 20 ALA 20 33 33 ALA ALA B . n B 1 21 VAL 21 34 34 VAL VAL B . n B 1 22 VAL 22 35 35 VAL VAL B . n B 1 23 THR 23 36 36 THR THR B . n B 1 24 VAL 24 37 37 VAL VAL B . n B 1 25 ASP 25 38 38 ASP ASP B . n B 1 26 GLY 26 39 39 GLY GLY B . n B 1 27 GLU 27 40 40 GLU GLU B . n B 1 28 VAL 28 41 41 VAL VAL B . n B 1 29 TYR 29 42 42 TYR TYR B . n B 1 30 GLY 30 43 43 GLY GLY B . n B 1 31 THR 31 44 44 THR THR B . n B 1 32 TYR 32 45 45 TYR TYR B . n B 1 33 SER 33 46 46 SER SER B . n B 1 34 LEU 34 47 47 LEU LEU B . n B 1 35 ALA 35 48 48 ALA ALA B . n B 1 36 LYS 36 49 49 LYS LYS B . n B 1 37 ASP 37 50 50 ASP ASP B . n B 1 38 GLN 38 51 51 GLN GLN B . n B 1 39 THR 39 52 52 THR THR B . n B 1 40 ILE 40 53 53 ILE ILE B . n B 1 41 GLU 41 54 54 GLU GLU B . n B 1 42 ILE 42 55 55 ILE ILE B . n B 1 43 GLN 43 56 56 GLN GLN B . n B 1 44 ASP 44 57 57 ASP ASP B . n B 1 45 GLY 45 58 58 GLY GLY B . n B 1 46 ASN 46 59 59 ASN ASN B . n B 1 47 ARG 47 60 60 ARG ARG B . n B 1 48 LEU 48 61 61 LEU LEU B . n B 1 49 ARG 49 62 62 ARG ARG B . n B 1 50 ILE 50 63 63 ILE ILE B . n B 1 51 GLN 51 64 64 GLN GLN B . n B 1 52 ASN 52 65 65 ASN ASN B . n B 1 53 GLY 53 66 66 GLY GLY B . n B 1 54 GLN 54 67 67 GLN GLN B . n B 1 55 ALA 55 68 68 ALA ALA B . n B 1 56 LYS 56 69 69 LYS LYS B . n B 1 57 MSE 57 70 70 MSE MSE B . n B 1 58 GLU 58 71 71 GLU GLU B . n B 1 59 TRP 59 72 72 TRP TRP B . n B 1 60 ALA 60 73 73 ALA ALA B . n B 1 61 ASP 61 74 74 ASP ASP B . n B 1 62 CYS 62 75 75 CYS CYS B . n B 1 63 PRO 63 76 76 PRO PRO B . n B 1 64 ASP 64 77 77 ASP ASP B . n B 1 65 GLN 65 78 78 GLN GLN B . n B 1 66 LEU 66 79 79 LEU LEU B . n B 1 67 CYS 67 80 80 CYS CYS B . n B 1 68 VAL 68 81 81 VAL VAL B . n B 1 69 HIS 69 82 82 HIS HIS B . n B 1 70 GLN 70 83 83 GLN GLN B . n B 1 71 LYS 71 84 84 LYS LYS B . n B 1 72 ALA 72 85 85 ALA ALA B . n B 1 73 ILE 73 86 86 ILE ILE B . n B 1 74 SER 74 87 87 SER SER B . n B 1 75 ARG 75 88 88 ARG ARG B . n B 1 76 THR 76 89 89 THR THR B . n B 1 77 GLY 77 90 90 GLY GLY B . n B 1 78 GLU 78 91 91 GLU GLU B . n B 1 79 SER 79 92 92 SER SER B . n B 1 80 ILE 80 93 93 ILE ILE B . n B 1 81 ILE 81 94 94 ILE ILE B . n B 1 82 CYS 82 95 95 CYS CYS B . n B 1 83 LEU 83 96 96 LEU LEU B . n B 1 84 PRO 84 97 97 PRO PRO B . n B 1 85 ASN 85 98 98 ASN ASN B . n B 1 86 GLN 86 99 99 GLN GLN B . n B 1 87 VAL 87 100 100 VAL VAL B . n B 1 88 VAL 88 101 101 VAL VAL B . n B 1 89 VAL 89 102 102 VAL VAL B . n B 1 90 SER 90 103 103 SER SER B . n B 1 91 VAL 91 104 104 VAL VAL B . n B 1 92 GLN 92 105 105 GLN GLN B . n B 1 93 GLY 93 106 106 GLY GLY B . n B 1 94 SER 94 107 ? ? ? B . n B 1 95 LYS 95 108 ? ? ? B . n B 1 96 GLU 96 109 ? ? ? B . n B 1 97 SER 97 110 ? ? ? B . n B 1 98 GLU 98 111 ? ? ? B . n B 1 99 LEU 99 112 ? ? ? B . n B 1 100 ASP 100 113 ? ? ? B . n B 1 101 GLY 101 114 ? ? ? B . n B 1 102 ILE 102 115 ? ? ? B . n B 1 103 VAL 103 116 ? ? ? B . n B 1 104 ASN 104 117 ? ? ? B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 201 107 ZN ZN A . D 2 ZN 1 201 107 ZN ZN B . E 3 PE4 1 202 122 PE4 PE4 B . F 4 HOH 1 301 123 HOH HOH A . F 4 HOH 2 302 124 HOH HOH A . F 4 HOH 3 303 126 HOH HOH A . F 4 HOH 4 304 127 HOH HOH A . F 4 HOH 5 305 128 HOH HOH A . F 4 HOH 6 306 130 HOH HOH A . F 4 HOH 7 307 131 HOH HOH A . F 4 HOH 8 308 133 HOH HOH A . F 4 HOH 9 309 134 HOH HOH A . F 4 HOH 10 310 135 HOH HOH A . F 4 HOH 11 311 137 HOH HOH A . F 4 HOH 12 312 138 HOH HOH A . F 4 HOH 13 313 139 HOH HOH A . F 4 HOH 14 314 140 HOH HOH A . F 4 HOH 15 315 141 HOH HOH A . F 4 HOH 16 316 142 HOH HOH A . F 4 HOH 17 317 143 HOH HOH A . F 4 HOH 18 318 144 HOH HOH A . F 4 HOH 19 319 145 HOH HOH A . F 4 HOH 20 320 146 HOH HOH A . F 4 HOH 21 321 147 HOH HOH A . F 4 HOH 22 322 148 HOH HOH A . F 4 HOH 23 323 151 HOH HOH A . F 4 HOH 24 324 153 HOH HOH A . F 4 HOH 25 325 154 HOH HOH A . F 4 HOH 26 326 155 HOH HOH A . F 4 HOH 27 327 159 HOH HOH A . F 4 HOH 28 328 162 HOH HOH A . F 4 HOH 29 329 163 HOH HOH A . F 4 HOH 30 330 164 HOH HOH A . F 4 HOH 31 331 170 HOH HOH A . F 4 HOH 32 332 171 HOH HOH A . F 4 HOH 33 333 172 HOH HOH A . F 4 HOH 34 334 173 HOH HOH A . F 4 HOH 35 335 174 HOH HOH A . G 4 HOH 1 301 125 HOH HOH B . G 4 HOH 2 302 129 HOH HOH B . G 4 HOH 3 303 132 HOH HOH B . G 4 HOH 4 304 136 HOH HOH B . G 4 HOH 5 305 149 HOH HOH B . G 4 HOH 6 306 150 HOH HOH B . G 4 HOH 7 307 152 HOH HOH B . G 4 HOH 8 308 156 HOH HOH B . G 4 HOH 9 309 158 HOH HOH B . G 4 HOH 10 310 160 HOH HOH B . G 4 HOH 11 311 161 HOH HOH B . G 4 HOH 12 312 165 HOH HOH B . G 4 HOH 13 313 166 HOH HOH B . G 4 HOH 14 314 167 HOH HOH B . G 4 HOH 15 315 168 HOH HOH B . G 4 HOH 16 316 169 HOH HOH B . G 4 HOH 17 317 175 HOH HOH B . G 4 HOH 18 318 176 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 57 A MSE 70 ? MET SELENOMETHIONINE 2 B MSE 57 B MSE 70 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1520 ? 1 MORE -86 ? 1 'SSA (A^2)' 8340 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 62 ? A CYS 75 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 SG ? A CYS 67 ? A CYS 80 ? 1_555 111.0 ? 2 SG ? A CYS 62 ? A CYS 75 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 SG ? A CYS 82 ? A CYS 95 ? 1_555 116.9 ? 3 SG ? A CYS 67 ? A CYS 80 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 SG ? A CYS 82 ? A CYS 95 ? 1_555 113.2 ? 4 SG ? A CYS 62 ? A CYS 75 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 O ? F HOH . ? A HOH 335 ? 1_555 102.4 ? 5 SG ? A CYS 67 ? A CYS 80 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 O ? F HOH . ? A HOH 335 ? 1_555 104.4 ? 6 SG ? A CYS 82 ? A CYS 95 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 O ? F HOH . ? A HOH 335 ? 1_555 107.5 ? 7 SG ? B CYS 62 ? B CYS 75 ? 1_555 ZN ? D ZN . ? B ZN 201 ? 1_555 SG ? B CYS 67 ? B CYS 80 ? 1_555 111.6 ? 8 SG ? B CYS 62 ? B CYS 75 ? 1_555 ZN ? D ZN . ? B ZN 201 ? 1_555 SG ? B CYS 82 ? B CYS 95 ? 1_555 116.7 ? 9 SG ? B CYS 67 ? B CYS 80 ? 1_555 ZN ? D ZN . ? B ZN 201 ? 1_555 SG ? B CYS 82 ? B CYS 95 ? 1_555 112.7 ? 10 SG ? B CYS 62 ? B CYS 75 ? 1_555 ZN ? D ZN . ? B ZN 201 ? 1_555 O ? G HOH . ? B HOH 318 ? 1_555 102.1 ? 11 SG ? B CYS 67 ? B CYS 80 ? 1_555 ZN ? D ZN . ? B ZN 201 ? 1_555 O ? G HOH . ? B HOH 318 ? 1_555 104.1 ? 12 SG ? B CYS 82 ? B CYS 95 ? 1_555 ZN ? D ZN . ? B ZN 201 ? 1_555 O ? G HOH . ? B HOH 318 ? 1_555 108.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation_author.name' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.value' 19 5 'Structure model' '_struct_conn.pdbx_dist_value' 20 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 5 'Structure model' '_struct_ref_seq_dif.details' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 27.0854 8.0181 3.5104 -0.0612 -0.0794 -0.0442 0.0229 0.0293 0.0450 4.6744 2.1640 7.1634 -0.0469 -1.0777 -0.6355 -0.3600 0.1252 0.2348 -0.1395 -0.1859 -0.0269 0.1177 0.3389 -0.0472 'X-RAY DIFFRACTION' 2 ? refined 38.0315 1.0473 18.1546 -0.0981 -0.1606 -0.0483 0.0095 -0.0480 0.0978 3.6875 3.4809 12.4646 -0.0623 -0.7483 -2.4601 0.2132 -0.4915 0.2783 0.0745 -0.0565 -0.5021 -0.0359 0.0232 0.1070 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -3 A 106 '{ A|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B -2 B 106 '{ B|* }' ? ? ? ? ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4ESN _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 33-117 OF THE TARGET SEQUENCE. ANALYSIS OF THE PURIFIED PROTEIN BY MASS SPECTROMETRY AND GEL ELECTROPHORESIS SHOWS THAT WHILE THE MAJORITY OF THE PROTEIN WAS CLEAVED, THERE WAS SOME UNCLEAVED PROTEIN PRESENT. SINCE ELECTRON DENSITY WAS OBSERVED FOR RESIDUES -2 AND -1 IN BOTH CHAINS, THE TAG SEQUENCE IS INCLUDED IN THE SEQRES RECORDS. THE CRYSTAL MAY CONTAIN A MIXTURE OF TAG-ON AND TAG-OFF PROTEIN. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 56 ? ? 64.37 -137.01 2 1 SER A 87 ? ? -148.78 -8.13 3 1 ASP B 57 ? ? 71.64 -19.14 4 1 SER B 87 ? ? -149.22 -7.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR -3 ? CG ? A TYR 16 CG 2 1 Y 1 A TYR -3 ? CD1 ? A TYR 16 CD1 3 1 Y 1 A TYR -3 ? CD2 ? A TYR 16 CD2 4 1 Y 1 A TYR -3 ? CE1 ? A TYR 16 CE1 5 1 Y 1 A TYR -3 ? CE2 ? A TYR 16 CE2 6 1 Y 1 A TYR -3 ? CZ ? A TYR 16 CZ 7 1 Y 1 A TYR -3 ? OH ? A TYR 16 OH 8 1 Y 1 B GLU 54 ? CD ? B GLU 41 CD 9 1 Y 1 B GLU 54 ? OE1 ? B GLU 41 OE1 10 1 Y 1 B GLU 54 ? OE2 ? B GLU 41 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A LEU -4 ? A LEU 15 16 1 Y 1 A SER 107 ? A SER 94 17 1 Y 1 A LYS 108 ? A LYS 95 18 1 Y 1 A GLU 109 ? A GLU 96 19 1 Y 1 A SER 110 ? A SER 97 20 1 Y 1 A GLU 111 ? A GLU 98 21 1 Y 1 A LEU 112 ? A LEU 99 22 1 Y 1 A ASP 113 ? A ASP 100 23 1 Y 1 A GLY 114 ? A GLY 101 24 1 Y 1 A ILE 115 ? A ILE 102 25 1 Y 1 A VAL 116 ? A VAL 103 26 1 Y 1 A ASN 117 ? A ASN 104 27 1 Y 1 B MSE -18 ? B MSE 1 28 1 Y 1 B GLY -17 ? B GLY 2 29 1 Y 1 B SER -16 ? B SER 3 30 1 Y 1 B ASP -15 ? B ASP 4 31 1 Y 1 B LYS -14 ? B LYS 5 32 1 Y 1 B ILE -13 ? B ILE 6 33 1 Y 1 B HIS -12 ? B HIS 7 34 1 Y 1 B HIS -11 ? B HIS 8 35 1 Y 1 B HIS -10 ? B HIS 9 36 1 Y 1 B HIS -9 ? B HIS 10 37 1 Y 1 B HIS -8 ? B HIS 11 38 1 Y 1 B HIS -7 ? B HIS 12 39 1 Y 1 B GLU -6 ? B GLU 13 40 1 Y 1 B ASN -5 ? B ASN 14 41 1 Y 1 B LEU -4 ? B LEU 15 42 1 Y 1 B TYR -3 ? B TYR 16 43 1 Y 1 B SER 107 ? B SER 94 44 1 Y 1 B LYS 108 ? B LYS 95 45 1 Y 1 B GLU 109 ? B GLU 96 46 1 Y 1 B SER 110 ? B SER 97 47 1 Y 1 B GLU 111 ? B GLU 98 48 1 Y 1 B LEU 112 ? B LEU 99 49 1 Y 1 B ASP 113 ? B ASP 100 50 1 Y 1 B GLY 114 ? B GLY 101 51 1 Y 1 B ILE 115 ? B ILE 102 52 1 Y 1 B VAL 116 ? B VAL 103 53 1 Y 1 B ASN 117 ? B ASN 104 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' PE4 4 water HOH #