data_4G29 # _entry.id 4G29 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4G29 RCSB RCSB073646 WWPDB D_1000073646 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4G2B _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4G29 _pdbx_database_status.recvd_initial_deposition_date 2012-07-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stebbins, C.E.' 1 'Bhaskaran, S.S.' 2 # _citation.id primary _citation.title 'Structure of the catalytic domain of the Salmonella virulence factor SseI.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 1613 _citation.page_last 1621 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23151626 _citation.pdbx_database_id_DOI 10.1107/S0907444912039042 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bhaskaran, S.S.' 1 primary 'Stebbins, C.E.' 2 # _cell.entry_id 4G29 _cell.length_a 52.256 _cell.length_b 52.256 _cell.length_c 132.146 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4G29 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Secreted effector protein sseI' 21655.412 1 ? ? 'UNP residues 137-322' ? 2 water nat water 18.015 137 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PGVERTDITYNLTSDIDAAAYLEELKQNPIINNKI(MSE)NPVGQCESL(MSE)TPVSNF(MSE)NEKGFDNIRYRGIFI WDKPTEEIPTNHFAVVGNKEGKDYVFDVSAHQFENRG(MSE)SNLNGPLILSADEWVCKYR(MSE)ATRRKLIYYTDFSN SSIAANAYDALPRELESES(MSE)AGKVFVTSPRWFNTFKKQKYSLIGK(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;PGVERTDITYNLTSDIDAAAYLEELKQNPIINNKIMNPVGQCESLMTPVSNFMNEKGFDNIRYRGIFIWDKPTEEIPTNH FAVVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSNSSIAANAYDALPRELESESM AGKVFVTSPRWFNTFKKQKYSLIGKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLY n 1 3 VAL n 1 4 GLU n 1 5 ARG n 1 6 THR n 1 7 ASP n 1 8 ILE n 1 9 THR n 1 10 TYR n 1 11 ASN n 1 12 LEU n 1 13 THR n 1 14 SER n 1 15 ASP n 1 16 ILE n 1 17 ASP n 1 18 ALA n 1 19 ALA n 1 20 ALA n 1 21 TYR n 1 22 LEU n 1 23 GLU n 1 24 GLU n 1 25 LEU n 1 26 LYS n 1 27 GLN n 1 28 ASN n 1 29 PRO n 1 30 ILE n 1 31 ILE n 1 32 ASN n 1 33 ASN n 1 34 LYS n 1 35 ILE n 1 36 MSE n 1 37 ASN n 1 38 PRO n 1 39 VAL n 1 40 GLY n 1 41 GLN n 1 42 CYS n 1 43 GLU n 1 44 SER n 1 45 LEU n 1 46 MSE n 1 47 THR n 1 48 PRO n 1 49 VAL n 1 50 SER n 1 51 ASN n 1 52 PHE n 1 53 MSE n 1 54 ASN n 1 55 GLU n 1 56 LYS n 1 57 GLY n 1 58 PHE n 1 59 ASP n 1 60 ASN n 1 61 ILE n 1 62 ARG n 1 63 TYR n 1 64 ARG n 1 65 GLY n 1 66 ILE n 1 67 PHE n 1 68 ILE n 1 69 TRP n 1 70 ASP n 1 71 LYS n 1 72 PRO n 1 73 THR n 1 74 GLU n 1 75 GLU n 1 76 ILE n 1 77 PRO n 1 78 THR n 1 79 ASN n 1 80 HIS n 1 81 PHE n 1 82 ALA n 1 83 VAL n 1 84 VAL n 1 85 GLY n 1 86 ASN n 1 87 LYS n 1 88 GLU n 1 89 GLY n 1 90 LYS n 1 91 ASP n 1 92 TYR n 1 93 VAL n 1 94 PHE n 1 95 ASP n 1 96 VAL n 1 97 SER n 1 98 ALA n 1 99 HIS n 1 100 GLN n 1 101 PHE n 1 102 GLU n 1 103 ASN n 1 104 ARG n 1 105 GLY n 1 106 MSE n 1 107 SER n 1 108 ASN n 1 109 LEU n 1 110 ASN n 1 111 GLY n 1 112 PRO n 1 113 LEU n 1 114 ILE n 1 115 LEU n 1 116 SER n 1 117 ALA n 1 118 ASP n 1 119 GLU n 1 120 TRP n 1 121 VAL n 1 122 CYS n 1 123 LYS n 1 124 TYR n 1 125 ARG n 1 126 MSE n 1 127 ALA n 1 128 THR n 1 129 ARG n 1 130 ARG n 1 131 LYS n 1 132 LEU n 1 133 ILE n 1 134 TYR n 1 135 TYR n 1 136 THR n 1 137 ASP n 1 138 PHE n 1 139 SER n 1 140 ASN n 1 141 SER n 1 142 SER n 1 143 ILE n 1 144 ALA n 1 145 ALA n 1 146 ASN n 1 147 ALA n 1 148 TYR n 1 149 ASP n 1 150 ALA n 1 151 LEU n 1 152 PRO n 1 153 ARG n 1 154 GLU n 1 155 LEU n 1 156 GLU n 1 157 SER n 1 158 GLU n 1 159 SER n 1 160 MSE n 1 161 ALA n 1 162 GLY n 1 163 LYS n 1 164 VAL n 1 165 PHE n 1 166 VAL n 1 167 THR n 1 168 SER n 1 169 PRO n 1 170 ARG n 1 171 TRP n 1 172 PHE n 1 173 ASN n 1 174 THR n 1 175 PHE n 1 176 LYS n 1 177 LYS n 1 178 GLN n 1 179 LYS n 1 180 TYR n 1 181 SER n 1 182 LEU n 1 183 ILE n 1 184 GLY n 1 185 LYS n 1 186 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'sseI, srfH, STM1051' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'LT2 / SGSC1412 / ATCC 700720' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella enterica subsp. enterica serovar Typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SSEI_SALTY _struct_ref.pdbx_db_accession Q8ZQ79 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PGVERTDITYNLTSDIDAAAYLEELKQNPIINNKIMNPVGQCESLMTPVSNFMNEKGFDNIRYRGIFIWDKPTEEIPTNH FAVVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSNSSIAANAYDALPRELESESM AGKVFVTSPRWFNTFKKQKYSLIGKM ; _struct_ref.pdbx_align_begin 137 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4G29 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 186 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8ZQ79 _struct_ref_seq.db_align_beg 137 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 322 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 137 _struct_ref_seq.pdbx_auth_seq_align_end 322 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4G29 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;Crystallization screens were conducted using 1:1 sitting drops at RT and 4 C. The C-terminal domain (137-322) (~20mg/mL) gave large rectangular crystals in 1.15M LiSO4, 0.1M NaOAc, pH 4.6 (4 C) when optimized (1:1 hanging drops). However these were very fragile and consisted of multiple lattices overlaid on each other as observed in their diffraction patterns. SseI 137-322 was then reductively methylated and rescreened. It gave multiple crystals of differing morphologies in a number of conditions containing MES, Tris, and HEPES buffers pH 6.0 - 9.0, and 1.6 to 2.0M (NH4)SO4. To obtain single crystals, crystals from 0.1M MES pH 7.1, 1.8M (NH4)SO4 were crushed and microseeded into pre-equilibrated (2 hrs) drops containing protein/reservoir solution (0.1M MES pH 5.5, 1.6M (NH4)SO4). This procedure produced single, small, rectangular crystals. To obtain larger crystals, single crystals obtained in the previous step were macroseeded into pre-equilibrated drops, giving large, thin rectangular plates that were well-diffracting. SeMet-substituted crystals of 137-322 were obtained in the same conditions but gave large crystals directly without any seeding. Crystals were then cryoprotected by transfer in small increments into mother liquor supplemented with 25% glycerol., VAPOR DIFFUSION, HANGING DROP, temperature 277.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97900 # _reflns.entry_id 4G29 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.70 _reflns.number_obs 19151 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4G29 _refine.ls_number_reflns_obs 19151 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.08 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.18469 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18318 _refine.ls_R_factor_R_free 0.21364 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1045 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 11.984 _refine.aniso_B[1][1] -0.07 _refine.aniso_B[2][2] -0.07 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.106 _refine.pdbx_overall_ESU_R_Free 0.103 _refine.overall_SU_ML 0.065 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.345 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1335 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 1472 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 19.08 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.019 0.022 ? 1367 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.006 0.020 ? 925 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.647 1.940 ? 1850 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.998 3.000 ? 2252 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.183 5.000 ? 164 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 37.044 24.928 ? 69 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.557 15.000 ? 231 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 20.858 15.000 ? 6 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.105 0.200 ? 196 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.008 0.021 ? 1522 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 281 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1.011 1.500 ? 828 ? 'X-RAY DIFFRACTION' r_mcbond_other 0.339 1.500 ? 331 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.705 2.000 ? 1338 ? 'X-RAY DIFFRACTION' r_scbond_it 2.982 3.000 ? 539 ? 'X-RAY DIFFRACTION' r_scangle_it 4.222 4.500 ? 512 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.702 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.number_reflns_R_work 1185 _refine_ls_shell.R_factor_R_work 0.297 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.355 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4G29 _struct.title 'Structure of the Catalytic Domain of the Salmonella Virulence Factor SseI' _struct.pdbx_descriptor 'Secreted effector protein sseI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G29 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'cysteine protease superfamily, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? GLN A 27 ? ASP A 153 GLN A 163 1 ? 11 HELX_P HELX_P2 2 ASN A 28 ? ASN A 37 ? ASN A 164 ASN A 173 1 ? 10 HELX_P HELX_P3 3 GLN A 41 ? LYS A 56 ? GLN A 177 LYS A 192 1 ? 16 HELX_P HELX_P4 4 SER A 97 ? GLU A 102 ? SER A 233 GLU A 238 5 ? 6 HELX_P HELX_P5 5 ALA A 117 ? ALA A 127 ? ALA A 253 ALA A 263 1 ? 11 HELX_P HELX_P6 6 ASN A 140 ? TYR A 148 ? ASN A 276 TYR A 284 1 ? 9 HELX_P HELX_P7 7 GLU A 154 ? GLU A 158 ? GLU A 290 GLU A 294 5 ? 5 HELX_P HELX_P8 8 PRO A 169 ? LYS A 177 ? PRO A 305 LYS A 313 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ILE 35 C ? ? ? 1_555 A MSE 36 N ? ? A ILE 171 A MSE 172 1_555 ? ? ? ? ? ? ? 1.318 ? covale2 covale ? ? A MSE 36 C ? ? ? 1_555 A ASN 37 N ? ? A MSE 172 A ASN 173 1_555 ? ? ? ? ? ? ? 1.336 ? covale3 covale ? ? A LEU 45 C ? ? ? 1_555 A MSE 46 N ? ? A LEU 181 A MSE 182 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 46 C ? ? ? 1_555 A THR 47 N ? ? A MSE 182 A THR 183 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A PHE 52 C ? ? ? 1_555 A MSE 53 N ? ? A PHE 188 A MSE 189 1_555 ? ? ? ? ? ? ? 1.320 ? covale6 covale ? ? A MSE 53 C ? ? ? 1_555 A ASN 54 N ? ? A MSE 189 A ASN 190 1_555 ? ? ? ? ? ? ? 1.319 ? covale7 covale ? ? A GLY 105 C ? ? ? 1_555 A MSE 106 N ? ? A GLY 241 A MSE 242 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? A MSE 106 C ? ? ? 1_555 A SER 107 N ? ? A MSE 242 A SER 243 1_555 ? ? ? ? ? ? ? 1.335 ? covale9 covale ? ? A ARG 125 C ? ? ? 1_555 A MSE 126 N ? ? A ARG 261 A MSE 262 1_555 ? ? ? ? ? ? ? 1.322 ? covale10 covale ? ? A MSE 126 C ? ? ? 1_555 A ALA 127 N ? ? A MSE 262 A ALA 263 1_555 ? ? ? ? ? ? ? 1.341 ? covale11 covale ? ? A SER 159 C ? ? ? 1_555 A MSE 160 N ? ? A SER 295 A MSE 296 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 160 C ? ? ? 1_555 A ALA 161 N ? ? A MSE 296 A ALA 297 1_555 ? ? ? ? ? ? ? 1.324 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 113 ? SER A 116 ? LEU A 249 SER A 252 A 2 LYS A 90 ? ASP A 95 ? LYS A 226 ASP A 231 A 3 THR A 78 ? LYS A 87 ? THR A 214 LYS A 223 A 4 ASP A 59 ? TRP A 69 ? ASP A 195 TRP A 205 A 5 LEU A 132 ? PHE A 138 ? LEU A 268 PHE A 274 A 6 VAL A 164 ? PHE A 165 ? VAL A 300 PHE A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 113 ? O LEU A 249 N ASP A 95 ? N ASP A 231 A 2 3 O LYS A 90 ? O LYS A 226 N LYS A 87 ? N LYS A 223 A 3 4 O ASN A 86 ? O ASN A 222 N ASP A 59 ? N ASP A 195 A 4 5 N TRP A 69 ? N TRP A 205 O LEU A 132 ? O LEU A 268 A 5 6 N TYR A 135 ? N TYR A 271 O VAL A 164 ? O VAL A 300 # _database_PDB_matrix.entry_id 4G29 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4G29 _atom_sites.fract_transf_matrix[1][1] 0.019137 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019137 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007567 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 137 ? ? ? A . n A 1 2 GLY 2 138 ? ? ? A . n A 1 3 VAL 3 139 ? ? ? A . n A 1 4 GLU 4 140 ? ? ? A . n A 1 5 ARG 5 141 ? ? ? A . n A 1 6 THR 6 142 ? ? ? A . n A 1 7 ASP 7 143 ? ? ? A . n A 1 8 ILE 8 144 ? ? ? A . n A 1 9 THR 9 145 145 THR THR A . n A 1 10 TYR 10 146 146 TYR TYR A . n A 1 11 ASN 11 147 147 ASN ASN A . n A 1 12 LEU 12 148 148 LEU LEU A . n A 1 13 THR 13 149 149 THR THR A . n A 1 14 SER 14 150 150 SER SER A . n A 1 15 ASP 15 151 151 ASP ASP A . n A 1 16 ILE 16 152 152 ILE ILE A . n A 1 17 ASP 17 153 153 ASP ASP A . n A 1 18 ALA 18 154 154 ALA ALA A . n A 1 19 ALA 19 155 155 ALA ALA A . n A 1 20 ALA 20 156 156 ALA ALA A . n A 1 21 TYR 21 157 157 TYR TYR A . n A 1 22 LEU 22 158 158 LEU LEU A . n A 1 23 GLU 23 159 159 GLU GLU A . n A 1 24 GLU 24 160 160 GLU GLU A . n A 1 25 LEU 25 161 161 LEU LEU A . n A 1 26 LYS 26 162 162 LYS LYS A . n A 1 27 GLN 27 163 163 GLN GLN A . n A 1 28 ASN 28 164 164 ASN ASN A . n A 1 29 PRO 29 165 165 PRO PRO A . n A 1 30 ILE 30 166 166 ILE ILE A . n A 1 31 ILE 31 167 167 ILE ILE A . n A 1 32 ASN 32 168 168 ASN ASN A . n A 1 33 ASN 33 169 169 ASN ASN A . n A 1 34 LYS 34 170 170 LYS LYS A . n A 1 35 ILE 35 171 171 ILE ILE A . n A 1 36 MSE 36 172 172 MSE MSE A . n A 1 37 ASN 37 173 173 ASN ASN A . n A 1 38 PRO 38 174 174 PRO PRO A . n A 1 39 VAL 39 175 175 VAL VAL A . n A 1 40 GLY 40 176 176 GLY GLY A . n A 1 41 GLN 41 177 177 GLN GLN A . n A 1 42 CYS 42 178 178 CYS CYS A . n A 1 43 GLU 43 179 179 GLU GLU A . n A 1 44 SER 44 180 180 SER SER A . n A 1 45 LEU 45 181 181 LEU LEU A . n A 1 46 MSE 46 182 182 MSE MSE A . n A 1 47 THR 47 183 183 THR THR A . n A 1 48 PRO 48 184 184 PRO PRO A . n A 1 49 VAL 49 185 185 VAL VAL A . n A 1 50 SER 50 186 186 SER SER A . n A 1 51 ASN 51 187 187 ASN ASN A . n A 1 52 PHE 52 188 188 PHE PHE A . n A 1 53 MSE 53 189 189 MSE MSE A . n A 1 54 ASN 54 190 190 ASN ASN A . n A 1 55 GLU 55 191 191 GLU GLU A . n A 1 56 LYS 56 192 192 LYS LYS A . n A 1 57 GLY 57 193 193 GLY GLY A . n A 1 58 PHE 58 194 194 PHE PHE A . n A 1 59 ASP 59 195 195 ASP ASP A . n A 1 60 ASN 60 196 196 ASN ASN A . n A 1 61 ILE 61 197 197 ILE ILE A . n A 1 62 ARG 62 198 198 ARG ARG A . n A 1 63 TYR 63 199 199 TYR TYR A . n A 1 64 ARG 64 200 200 ARG ARG A . n A 1 65 GLY 65 201 201 GLY GLY A . n A 1 66 ILE 66 202 202 ILE ILE A . n A 1 67 PHE 67 203 203 PHE PHE A . n A 1 68 ILE 68 204 204 ILE ILE A . n A 1 69 TRP 69 205 205 TRP TRP A . n A 1 70 ASP 70 206 206 ASP ASP A . n A 1 71 LYS 71 207 207 LYS LYS A . n A 1 72 PRO 72 208 208 PRO PRO A . n A 1 73 THR 73 209 209 THR THR A . n A 1 74 GLU 74 210 210 GLU GLU A . n A 1 75 GLU 75 211 211 GLU GLU A . n A 1 76 ILE 76 212 212 ILE ILE A . n A 1 77 PRO 77 213 213 PRO PRO A . n A 1 78 THR 78 214 214 THR THR A . n A 1 79 ASN 79 215 215 ASN ASN A . n A 1 80 HIS 80 216 216 HIS HIS A . n A 1 81 PHE 81 217 217 PHE PHE A . n A 1 82 ALA 82 218 218 ALA ALA A . n A 1 83 VAL 83 219 219 VAL VAL A . n A 1 84 VAL 84 220 220 VAL VAL A . n A 1 85 GLY 85 221 221 GLY GLY A . n A 1 86 ASN 86 222 222 ASN ASN A . n A 1 87 LYS 87 223 223 LYS LYS A . n A 1 88 GLU 88 224 224 GLU GLU A . n A 1 89 GLY 89 225 225 GLY GLY A . n A 1 90 LYS 90 226 226 LYS LYS A . n A 1 91 ASP 91 227 227 ASP ASP A . n A 1 92 TYR 92 228 228 TYR TYR A . n A 1 93 VAL 93 229 229 VAL VAL A . n A 1 94 PHE 94 230 230 PHE PHE A . n A 1 95 ASP 95 231 231 ASP ASP A . n A 1 96 VAL 96 232 232 VAL VAL A . n A 1 97 SER 97 233 233 SER SER A . n A 1 98 ALA 98 234 234 ALA ALA A . n A 1 99 HIS 99 235 235 HIS HIS A . n A 1 100 GLN 100 236 236 GLN GLN A . n A 1 101 PHE 101 237 237 PHE PHE A . n A 1 102 GLU 102 238 238 GLU GLU A . n A 1 103 ASN 103 239 239 ASN ASN A . n A 1 104 ARG 104 240 240 ARG ARG A . n A 1 105 GLY 105 241 241 GLY GLY A . n A 1 106 MSE 106 242 242 MSE MSE A . n A 1 107 SER 107 243 243 SER SER A . n A 1 108 ASN 108 244 244 ASN ASN A . n A 1 109 LEU 109 245 245 LEU LEU A . n A 1 110 ASN 110 246 246 ASN ASN A . n A 1 111 GLY 111 247 247 GLY GLY A . n A 1 112 PRO 112 248 248 PRO PRO A . n A 1 113 LEU 113 249 249 LEU LEU A . n A 1 114 ILE 114 250 250 ILE ILE A . n A 1 115 LEU 115 251 251 LEU LEU A . n A 1 116 SER 116 252 252 SER SER A . n A 1 117 ALA 117 253 253 ALA ALA A . n A 1 118 ASP 118 254 254 ASP ASP A . n A 1 119 GLU 119 255 255 GLU GLU A . n A 1 120 TRP 120 256 256 TRP TRP A . n A 1 121 VAL 121 257 257 VAL VAL A . n A 1 122 CYS 122 258 258 CYS CYS A . n A 1 123 LYS 123 259 259 LYS LYS A . n A 1 124 TYR 124 260 260 TYR TYR A . n A 1 125 ARG 125 261 261 ARG ARG A . n A 1 126 MSE 126 262 262 MSE MSE A . n A 1 127 ALA 127 263 263 ALA ALA A . n A 1 128 THR 128 264 ? ? ? A . n A 1 129 ARG 129 265 ? ? ? A . n A 1 130 ARG 130 266 ? ? ? A . n A 1 131 LYS 131 267 267 LYS LYS A . n A 1 132 LEU 132 268 268 LEU LEU A . n A 1 133 ILE 133 269 269 ILE ILE A . n A 1 134 TYR 134 270 270 TYR TYR A . n A 1 135 TYR 135 271 271 TYR TYR A . n A 1 136 THR 136 272 272 THR THR A . n A 1 137 ASP 137 273 273 ASP ASP A . n A 1 138 PHE 138 274 274 PHE PHE A . n A 1 139 SER 139 275 275 SER SER A . n A 1 140 ASN 140 276 276 ASN ASN A . n A 1 141 SER 141 277 277 SER SER A . n A 1 142 SER 142 278 278 SER SER A . n A 1 143 ILE 143 279 279 ILE ILE A . n A 1 144 ALA 144 280 280 ALA ALA A . n A 1 145 ALA 145 281 281 ALA ALA A . n A 1 146 ASN 146 282 282 ASN ASN A . n A 1 147 ALA 147 283 283 ALA ALA A . n A 1 148 TYR 148 284 284 TYR TYR A . n A 1 149 ASP 149 285 285 ASP ASP A . n A 1 150 ALA 150 286 286 ALA ALA A . n A 1 151 LEU 151 287 287 LEU LEU A . n A 1 152 PRO 152 288 288 PRO PRO A . n A 1 153 ARG 153 289 289 ARG ARG A . n A 1 154 GLU 154 290 290 GLU GLU A . n A 1 155 LEU 155 291 291 LEU LEU A . n A 1 156 GLU 156 292 292 GLU GLU A . n A 1 157 SER 157 293 293 SER SER A . n A 1 158 GLU 158 294 294 GLU GLU A . n A 1 159 SER 159 295 295 SER SER A . n A 1 160 MSE 160 296 296 MSE MSE A . n A 1 161 ALA 161 297 297 ALA ALA A . n A 1 162 GLY 162 298 298 GLY GLY A . n A 1 163 LYS 163 299 299 LYS LYS A . n A 1 164 VAL 164 300 300 VAL VAL A . n A 1 165 PHE 165 301 301 PHE PHE A . n A 1 166 VAL 166 302 302 VAL VAL A . n A 1 167 THR 167 303 303 THR THR A . n A 1 168 SER 168 304 304 SER SER A . n A 1 169 PRO 169 305 305 PRO PRO A . n A 1 170 ARG 170 306 306 ARG ARG A . n A 1 171 TRP 171 307 307 TRP TRP A . n A 1 172 PHE 172 308 308 PHE PHE A . n A 1 173 ASN 173 309 309 ASN ASN A . n A 1 174 THR 174 310 310 THR THR A . n A 1 175 PHE 175 311 311 PHE PHE A . n A 1 176 LYS 176 312 312 LYS LYS A . n A 1 177 LYS 177 313 313 LYS LYS A . n A 1 178 GLN 178 314 ? ? ? A . n A 1 179 LYS 179 315 ? ? ? A . n A 1 180 TYR 180 316 ? ? ? A . n A 1 181 SER 181 317 ? ? ? A . n A 1 182 LEU 182 318 ? ? ? A . n A 1 183 ILE 183 319 ? ? ? A . n A 1 184 GLY 184 320 ? ? ? A . n A 1 185 LYS 185 321 ? ? ? A . n A 1 186 MSE 186 322 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 401 1 HOH HOH A . B 2 HOH 2 402 2 HOH HOH A . B 2 HOH 3 403 3 HOH HOH A . B 2 HOH 4 404 4 HOH HOH A . B 2 HOH 5 405 5 HOH HOH A . B 2 HOH 6 406 6 HOH HOH A . B 2 HOH 7 407 7 HOH HOH A . B 2 HOH 8 408 8 HOH HOH A . B 2 HOH 9 409 9 HOH HOH A . B 2 HOH 10 410 10 HOH HOH A . B 2 HOH 11 411 11 HOH HOH A . B 2 HOH 12 412 12 HOH HOH A . B 2 HOH 13 413 13 HOH HOH A . B 2 HOH 14 414 14 HOH HOH A . B 2 HOH 15 415 15 HOH HOH A . B 2 HOH 16 416 16 HOH HOH A . B 2 HOH 17 417 17 HOH HOH A . B 2 HOH 18 418 18 HOH HOH A . B 2 HOH 19 419 19 HOH HOH A . B 2 HOH 20 420 20 HOH HOH A . B 2 HOH 21 421 21 HOH HOH A . B 2 HOH 22 422 22 HOH HOH A . B 2 HOH 23 423 23 HOH HOH A . B 2 HOH 24 424 24 HOH HOH A . B 2 HOH 25 425 25 HOH HOH A . B 2 HOH 26 426 26 HOH HOH A . B 2 HOH 27 427 27 HOH HOH A . B 2 HOH 28 428 28 HOH HOH A . B 2 HOH 29 429 29 HOH HOH A . B 2 HOH 30 430 30 HOH HOH A . B 2 HOH 31 431 31 HOH HOH A . B 2 HOH 32 432 32 HOH HOH A . B 2 HOH 33 433 33 HOH HOH A . B 2 HOH 34 434 34 HOH HOH A . B 2 HOH 35 435 35 HOH HOH A . B 2 HOH 36 436 36 HOH HOH A . B 2 HOH 37 437 37 HOH HOH A . B 2 HOH 38 438 38 HOH HOH A . B 2 HOH 39 439 39 HOH HOH A . B 2 HOH 40 440 40 HOH HOH A . B 2 HOH 41 441 41 HOH HOH A . B 2 HOH 42 442 42 HOH HOH A . B 2 HOH 43 443 43 HOH HOH A . B 2 HOH 44 444 44 HOH HOH A . B 2 HOH 45 445 45 HOH HOH A . B 2 HOH 46 446 46 HOH HOH A . B 2 HOH 47 447 47 HOH HOH A . B 2 HOH 48 448 48 HOH HOH A . B 2 HOH 49 449 49 HOH HOH A . B 2 HOH 50 450 50 HOH HOH A . B 2 HOH 51 451 51 HOH HOH A . B 2 HOH 52 452 52 HOH HOH A . B 2 HOH 53 453 53 HOH HOH A . B 2 HOH 54 454 54 HOH HOH A . B 2 HOH 55 455 55 HOH HOH A . B 2 HOH 56 456 56 HOH HOH A . B 2 HOH 57 457 57 HOH HOH A . B 2 HOH 58 458 58 HOH HOH A . B 2 HOH 59 459 59 HOH HOH A . B 2 HOH 60 460 60 HOH HOH A . B 2 HOH 61 461 61 HOH HOH A . B 2 HOH 62 462 62 HOH HOH A . B 2 HOH 63 463 63 HOH HOH A . B 2 HOH 64 464 64 HOH HOH A . B 2 HOH 65 465 65 HOH HOH A . B 2 HOH 66 466 66 HOH HOH A . B 2 HOH 67 467 67 HOH HOH A . B 2 HOH 68 468 68 HOH HOH A . B 2 HOH 69 469 69 HOH HOH A . B 2 HOH 70 470 70 HOH HOH A . B 2 HOH 71 471 71 HOH HOH A . B 2 HOH 72 472 72 HOH HOH A . B 2 HOH 73 473 73 HOH HOH A . B 2 HOH 74 474 74 HOH HOH A . B 2 HOH 75 475 75 HOH HOH A . B 2 HOH 76 476 76 HOH HOH A . B 2 HOH 77 477 77 HOH HOH A . B 2 HOH 78 478 78 HOH HOH A . B 2 HOH 79 479 79 HOH HOH A . B 2 HOH 80 480 80 HOH HOH A . B 2 HOH 81 481 81 HOH HOH A . B 2 HOH 82 482 82 HOH HOH A . B 2 HOH 83 483 83 HOH HOH A . B 2 HOH 84 484 84 HOH HOH A . B 2 HOH 85 485 85 HOH HOH A . B 2 HOH 86 486 86 HOH HOH A . B 2 HOH 87 487 87 HOH HOH A . B 2 HOH 88 488 88 HOH HOH A . B 2 HOH 89 489 89 HOH HOH A . B 2 HOH 90 490 90 HOH HOH A . B 2 HOH 91 491 91 HOH HOH A . B 2 HOH 92 492 92 HOH HOH A . B 2 HOH 93 493 93 HOH HOH A . B 2 HOH 94 494 94 HOH HOH A . B 2 HOH 95 495 95 HOH HOH A . B 2 HOH 96 496 96 HOH HOH A . B 2 HOH 97 497 97 HOH HOH A . B 2 HOH 98 498 98 HOH HOH A . B 2 HOH 99 499 99 HOH HOH A . B 2 HOH 100 500 100 HOH HOH A . B 2 HOH 101 501 101 HOH HOH A . B 2 HOH 102 502 102 HOH HOH A . B 2 HOH 103 503 103 HOH HOH A . B 2 HOH 104 504 104 HOH HOH A . B 2 HOH 105 505 105 HOH HOH A . B 2 HOH 106 506 106 HOH HOH A . B 2 HOH 107 507 107 HOH HOH A . B 2 HOH 108 508 108 HOH HOH A . B 2 HOH 109 509 109 HOH HOH A . B 2 HOH 110 510 110 HOH HOH A . B 2 HOH 111 511 111 HOH HOH A . B 2 HOH 112 512 112 HOH HOH A . B 2 HOH 113 513 113 HOH HOH A . B 2 HOH 114 514 114 HOH HOH A . B 2 HOH 115 515 115 HOH HOH A . B 2 HOH 116 516 116 HOH HOH A . B 2 HOH 117 517 117 HOH HOH A . B 2 HOH 118 518 118 HOH HOH A . B 2 HOH 119 519 119 HOH HOH A . B 2 HOH 120 520 120 HOH HOH A . B 2 HOH 121 521 121 HOH HOH A . B 2 HOH 122 522 122 HOH HOH A . B 2 HOH 123 523 123 HOH HOH A . B 2 HOH 124 524 124 HOH HOH A . B 2 HOH 125 525 125 HOH HOH A . B 2 HOH 126 526 126 HOH HOH A . B 2 HOH 127 527 127 HOH HOH A . B 2 HOH 128 528 128 HOH HOH A . B 2 HOH 129 529 129 HOH HOH A . B 2 HOH 130 530 130 HOH HOH A . B 2 HOH 131 531 131 HOH HOH A . B 2 HOH 132 532 132 HOH HOH A . B 2 HOH 133 533 133 HOH HOH A . B 2 HOH 134 534 134 HOH HOH A . B 2 HOH 135 535 135 HOH HOH A . B 2 HOH 136 536 136 HOH HOH A . B 2 HOH 137 537 137 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 36 A MSE 172 ? MET SELENOMETHIONINE 2 A MSE 46 A MSE 182 ? MET SELENOMETHIONINE 3 A MSE 53 A MSE 189 ? MET SELENOMETHIONINE 4 A MSE 106 A MSE 242 ? MET SELENOMETHIONINE 5 A MSE 126 A MSE 262 ? MET SELENOMETHIONINE 6 A MSE 160 A MSE 296 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-11-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 34.2980 16.6320 14.9920 0.0701 0.2296 0.1153 -0.0997 0.0344 -0.0228 6.1234 9.3188 7.2073 -2.7240 -1.4506 -2.5665 0.2529 0.2147 0.4038 -0.0998 -0.1312 -0.7355 -0.3875 0.8526 -0.1216 'X-RAY DIFFRACTION' 2 ? refined 23.1840 16.8000 24.8880 0.1353 0.0956 0.0909 -0.0220 0.0338 -0.0274 3.9438 1.0664 3.5795 0.0328 -2.1365 -0.6126 0.1287 -0.2855 0.3293 0.2606 0.0606 -0.0548 -0.4632 0.3900 -0.1893 'X-RAY DIFFRACTION' 3 ? refined 21.4740 4.9540 25.7640 0.1291 0.1256 0.1001 0.0042 -0.0115 0.0168 3.7410 7.4915 2.7668 -5.2924 1.9319 -2.7615 0.1416 -0.0691 -0.2726 -0.2233 0.0587 0.3909 0.2023 0.0757 -0.2004 'X-RAY DIFFRACTION' 4 ? refined 17.4110 15.8060 13.5710 0.1421 0.0851 0.1333 0.0085 0.0230 0.0076 2.3528 0.2130 2.7995 0.2407 -0.5877 0.1146 0.1127 -0.0118 0.2525 -0.0396 -0.0149 0.1112 -0.2920 0.0343 -0.0979 'X-RAY DIFFRACTION' 5 ? refined 21.7220 -3.2430 8.8880 0.1322 0.1116 0.0958 -0.0012 0.0312 0.0169 2.0479 2.7114 1.4324 0.2595 -0.1436 0.3639 -0.0389 -0.0040 -0.2116 0.0270 -0.0121 -0.1114 0.1575 0.0246 0.0509 'X-RAY DIFFRACTION' 6 ? refined 26.4590 11.9430 12.5180 0.1139 0.1472 0.1231 -0.0237 0.0277 -0.0037 2.9599 2.5826 3.3909 -0.4917 0.4539 0.4968 -0.0285 0.0724 0.2179 0.0141 0.0851 -0.0944 -0.2212 0.2743 -0.0566 'X-RAY DIFFRACTION' 7 ? refined 31.8440 5.4270 13.4940 0.0874 0.1728 0.1103 0.0015 0.0080 -0.0140 1.9944 3.6480 3.6016 -0.8610 1.3679 0.7907 0.0614 -0.0900 -0.1750 0.1342 0.1700 -0.1739 0.2696 0.4179 -0.2314 'X-RAY DIFFRACTION' 8 ? refined 33.5590 -1.3950 7.5290 0.1269 0.1981 0.1695 0.0401 0.0411 0.0004 7.9389 4.6770 12.9543 -0.5707 4.5599 -0.4652 -0.0487 -0.2752 0.1886 0.2990 -0.0486 -0.4912 -0.3362 0.5509 0.0974 'X-RAY DIFFRACTION' 9 ? refined 18.5220 -1.5070 3.1720 0.1117 0.1113 0.0871 -0.0089 0.0165 0.0027 1.5707 1.2224 1.2090 0.9655 -0.3991 0.0821 -0.1326 0.2296 -0.1241 -0.1349 0.0729 0.0756 0.0895 -0.1205 0.0598 'X-RAY DIFFRACTION' 10 ? refined 31.2060 -11.2330 -2.4540 0.0951 0.0727 0.1292 0.0251 0.0264 -0.0174 7.9121 11.5533 10.0223 0.9511 0.9734 2.3941 -0.0174 0.3740 -0.3119 -0.4541 0.2101 -0.3086 0.2185 0.2438 -0.1928 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 145 ? ? A 154 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 155 ? ? A 167 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 168 ? ? A 177 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 178 ? ? A 198 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 199 ? ? A 220 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 221 ? ? A 238 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 239 ? ? A 260 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 261 ? ? A 268 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 269 ? ? A 304 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 305 ? ? A 313 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 REFMAC refinement 5.5.0044 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 463 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 510 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 178 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 178 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.610 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.202 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 284 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -115.00 _pdbx_validate_torsion.psi 54.39 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 137 ? A PRO 1 2 1 Y 1 A GLY 138 ? A GLY 2 3 1 Y 1 A VAL 139 ? A VAL 3 4 1 Y 1 A GLU 140 ? A GLU 4 5 1 Y 1 A ARG 141 ? A ARG 5 6 1 Y 1 A THR 142 ? A THR 6 7 1 Y 1 A ASP 143 ? A ASP 7 8 1 Y 1 A ILE 144 ? A ILE 8 9 1 Y 1 A THR 264 ? A THR 128 10 1 Y 1 A ARG 265 ? A ARG 129 11 1 Y 1 A ARG 266 ? A ARG 130 12 1 Y 1 A GLN 314 ? A GLN 178 13 1 Y 1 A LYS 315 ? A LYS 179 14 1 Y 1 A TYR 316 ? A TYR 180 15 1 Y 1 A SER 317 ? A SER 181 16 1 Y 1 A LEU 318 ? A LEU 182 17 1 Y 1 A ILE 319 ? A ILE 183 18 1 Y 1 A GLY 320 ? A GLY 184 19 1 Y 1 A LYS 321 ? A LYS 185 20 1 Y 1 A MSE 322 ? A MSE 186 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #