data_4GDL # _entry.id 4GDL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4GDL RCSB RCSB074049 WWPDB D_1000074049 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4GDK _pdbx_database_related.details 'The structure of the same complex in a different space group.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4GDL _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-31 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Otomo, C.' 1 'Metlagel, Z.' 2 'Takaesu, G.' 3 'Otomo, T.' 4 # _citation.id primary _citation.title 'Structure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 20 _citation.page_first 59 _citation.page_last 66 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23202584 _citation.pdbx_database_id_DOI 10.1038/nsmb.2431 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Otomo, C.' 1 primary 'Metlagel, Z.' 2 primary 'Takaesu, G.' 3 primary 'Otomo, T.' 4 # _cell.length_a 136.601 _cell.length_b 58.399 _cell.length_c 91.802 _cell.angle_alpha 90.000 _cell.angle_beta 130.040 _cell.angle_gamma 90.000 _cell.entry_id 4GDL _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 4GDL _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-like protein ATG12' 10282.029 1 ? ? ? ? 2 polymer man 'Autophagy protein 5' 32489.195 1 ? ? ? ? 3 polymer man 'Autophagy-related protein 16-1' 4657.435 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Autophagy-related protein 12, APG12-like' 2 'APG5-like, Apoptosis-specific protein' 3 'APG16-like 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKL VLHYCKSQAWG ; ;GSKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKL VLHYCKSQAWG ; A ? 2 'polypeptide(L)' no no ;MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWH YPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND RFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD ; ;MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWH YPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND RFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD ; B ? 3 'polypeptide(L)' no no SHMPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLL SHMPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLL C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 LYS n 1 5 LYS n 1 6 ILE n 1 7 ASP n 1 8 ILE n 1 9 LEU n 1 10 LEU n 1 11 LYS n 1 12 ALA n 1 13 VAL n 1 14 GLY n 1 15 ASP n 1 16 THR n 1 17 PRO n 1 18 ILE n 1 19 MET n 1 20 LYS n 1 21 THR n 1 22 LYS n 1 23 LYS n 1 24 TRP n 1 25 ALA n 1 26 VAL n 1 27 GLU n 1 28 ARG n 1 29 THR n 1 30 ARG n 1 31 THR n 1 32 ILE n 1 33 GLN n 1 34 GLY n 1 35 LEU n 1 36 ILE n 1 37 ASP n 1 38 PHE n 1 39 ILE n 1 40 LYS n 1 41 LYS n 1 42 PHE n 1 43 LEU n 1 44 LYS n 1 45 LEU n 1 46 VAL n 1 47 ALA n 1 48 SER n 1 49 GLU n 1 50 GLN n 1 51 LEU n 1 52 PHE n 1 53 ILE n 1 54 TYR n 1 55 VAL n 1 56 ASN n 1 57 GLN n 1 58 SER n 1 59 PHE n 1 60 ALA n 1 61 PRO n 1 62 SER n 1 63 PRO n 1 64 ASP n 1 65 GLN n 1 66 GLU n 1 67 VAL n 1 68 GLY n 1 69 THR n 1 70 LEU n 1 71 TYR n 1 72 GLU n 1 73 CYS n 1 74 PHE n 1 75 GLY n 1 76 SER n 1 77 ASP n 1 78 GLY n 1 79 LYS n 1 80 LEU n 1 81 VAL n 1 82 LEU n 1 83 HIS n 1 84 TYR n 1 85 CYS n 1 86 LYS n 1 87 SER n 1 88 GLN n 1 89 ALA n 1 90 TRP n 1 91 GLY n 2 1 MET n 2 2 THR n 2 3 ASP n 2 4 ASP n 2 5 LYS n 2 6 ASP n 2 7 VAL n 2 8 LEU n 2 9 ARG n 2 10 ASP n 2 11 VAL n 2 12 TRP n 2 13 PHE n 2 14 GLY n 2 15 ARG n 2 16 ILE n 2 17 PRO n 2 18 THR n 2 19 CYS n 2 20 PHE n 2 21 THR n 2 22 LEU n 2 23 TYR n 2 24 GLN n 2 25 ASP n 2 26 GLU n 2 27 ILE n 2 28 THR n 2 29 GLU n 2 30 ARG n 2 31 GLU n 2 32 ALA n 2 33 GLU n 2 34 PRO n 2 35 TYR n 2 36 TYR n 2 37 LEU n 2 38 LEU n 2 39 LEU n 2 40 PRO n 2 41 ARG n 2 42 VAL n 2 43 SER n 2 44 TYR n 2 45 LEU n 2 46 THR n 2 47 LEU n 2 48 VAL n 2 49 THR n 2 50 ASP n 2 51 LYS n 2 52 VAL n 2 53 LYS n 2 54 LYS n 2 55 HIS n 2 56 PHE n 2 57 GLN n 2 58 LYS n 2 59 VAL n 2 60 MET n 2 61 ARG n 2 62 GLN n 2 63 GLU n 2 64 ASP n 2 65 ILE n 2 66 SER n 2 67 GLU n 2 68 ILE n 2 69 TRP n 2 70 PHE n 2 71 GLU n 2 72 TYR n 2 73 GLU n 2 74 GLY n 2 75 THR n 2 76 PRO n 2 77 LEU n 2 78 LYS n 2 79 TRP n 2 80 HIS n 2 81 TYR n 2 82 PRO n 2 83 ILE n 2 84 GLY n 2 85 LEU n 2 86 LEU n 2 87 PHE n 2 88 ASP n 2 89 LEU n 2 90 LEU n 2 91 ALA n 2 92 SER n 2 93 SER n 2 94 SER n 2 95 ALA n 2 96 LEU n 2 97 PRO n 2 98 TRP n 2 99 ASN n 2 100 ILE n 2 101 THR n 2 102 VAL n 2 103 HIS n 2 104 PHE n 2 105 LYS n 2 106 SER n 2 107 PHE n 2 108 PRO n 2 109 GLU n 2 110 LYS n 2 111 ASP n 2 112 LEU n 2 113 LEU n 2 114 HIS n 2 115 CYS n 2 116 PRO n 2 117 SER n 2 118 LYS n 2 119 ASP n 2 120 ALA n 2 121 ILE n 2 122 GLU n 2 123 ALA n 2 124 HIS n 2 125 PHE n 2 126 MET n 2 127 SER n 2 128 CYS n 2 129 MET n 2 130 LYS n 2 131 GLU n 2 132 ALA n 2 133 ASP n 2 134 ALA n 2 135 LEU n 2 136 LYS n 2 137 HIS n 2 138 LYS n 2 139 SER n 2 140 GLN n 2 141 VAL n 2 142 ILE n 2 143 ASN n 2 144 GLU n 2 145 MET n 2 146 GLN n 2 147 LYS n 2 148 LYS n 2 149 ASP n 2 150 HIS n 2 151 LYS n 2 152 GLN n 2 153 LEU n 2 154 TRP n 2 155 MET n 2 156 GLY n 2 157 LEU n 2 158 GLN n 2 159 ASN n 2 160 ASP n 2 161 ARG n 2 162 PHE n 2 163 ASP n 2 164 GLN n 2 165 PHE n 2 166 TRP n 2 167 ALA n 2 168 ILE n 2 169 ASN n 2 170 ARG n 2 171 LYS n 2 172 LEU n 2 173 MET n 2 174 GLU n 2 175 TYR n 2 176 PRO n 2 177 ALA n 2 178 GLU n 2 179 GLU n 2 180 ASN n 2 181 GLY n 2 182 PHE n 2 183 ARG n 2 184 TYR n 2 185 ILE n 2 186 PRO n 2 187 PHE n 2 188 ARG n 2 189 ILE n 2 190 TYR n 2 191 GLN n 2 192 THR n 2 193 THR n 2 194 THR n 2 195 GLU n 2 196 ARG n 2 197 PRO n 2 198 PHE n 2 199 ILE n 2 200 GLN n 2 201 LYS n 2 202 LEU n 2 203 PHE n 2 204 ARG n 2 205 PRO n 2 206 VAL n 2 207 ALA n 2 208 ALA n 2 209 ASP n 2 210 GLY n 2 211 GLN n 2 212 LEU n 2 213 HIS n 2 214 THR n 2 215 LEU n 2 216 GLY n 2 217 ASP n 2 218 LEU n 2 219 LEU n 2 220 LYS n 2 221 GLU n 2 222 VAL n 2 223 CYS n 2 224 PRO n 2 225 SER n 2 226 ALA n 2 227 ILE n 2 228 ASP n 2 229 PRO n 2 230 GLU n 2 231 ASP n 2 232 GLY n 2 233 GLU n 2 234 LYS n 2 235 LYS n 2 236 ASN n 2 237 GLN n 2 238 VAL n 2 239 MET n 2 240 ILE n 2 241 HIS n 2 242 GLY n 2 243 ILE n 2 244 GLU n 2 245 PRO n 2 246 MET n 2 247 LEU n 2 248 GLU n 2 249 THR n 2 250 PRO n 2 251 LEU n 2 252 GLN n 2 253 TRP n 2 254 LEU n 2 255 SER n 2 256 GLU n 2 257 HIS n 2 258 LEU n 2 259 SER n 2 260 TYR n 2 261 PRO n 2 262 ASP n 2 263 ASN n 2 264 PHE n 2 265 LEU n 2 266 HIS n 2 267 ILE n 2 268 SER n 2 269 ILE n 2 270 ILE n 2 271 PRO n 2 272 GLN n 2 273 PRO n 2 274 THR n 2 275 ASP n 3 1 SER n 3 2 HIS n 3 3 MET n 3 4 PRO n 3 5 ARG n 3 6 TRP n 3 7 LYS n 3 8 ARG n 3 9 HIS n 3 10 ILE n 3 11 SER n 3 12 GLU n 3 13 GLN n 3 14 LEU n 3 15 ARG n 3 16 ARG n 3 17 ARG n 3 18 ASP n 3 19 ARG n 3 20 LEU n 3 21 GLN n 3 22 ARG n 3 23 GLN n 3 24 ALA n 3 25 PHE n 3 26 GLU n 3 27 GLU n 3 28 ILE n 3 29 ILE n 3 30 LEU n 3 31 GLN n 3 32 TYR n 3 33 ASN n 3 34 LYS n 3 35 LEU n 3 36 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'APG12, APG12L, ATG12' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'pACYC Duet-1' ? ? 2 1 sample ? ? ? human ? 'APG5L, ASP, ATG5' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'pACYC Duet-1' ? ? 3 1 sample ? ? ? human ? 'APG16L, ATG16L1, UNQ9393/PRO34307' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ATG12_HUMAN O94817 1 ;KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVL HYCKSQAWG ; 52 ? 2 UNP ATG5_HUMAN Q9H1Y0 2 ;MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWH YPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND RFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD ; 1 ? 3 UNP A16L1_HUMAN Q676U5 3 PRWKRHISEQLRRRDRLQRQAFEEIILQYNKLL 11 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GDL A 3 ? 91 ? O94817 52 ? 140 ? 52 140 2 2 4GDL B 1 ? 275 ? Q9H1Y0 1 ? 275 ? 1 275 3 3 4GDL C 4 ? 36 ? Q676U5 11 ? 43 ? 11 43 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GDL GLY A 1 ? UNP O94817 ? ? 'EXPRESSION TAG' 50 1 1 4GDL SER A 2 ? UNP O94817 ? ? 'EXPRESSION TAG' 51 2 3 4GDL SER C 1 ? UNP Q676U5 ? ? 'EXPRESSION TAG' 8 3 3 4GDL HIS C 2 ? UNP Q676U5 ? ? 'EXPRESSION TAG' 9 4 3 4GDL MET C 3 ? UNP Q676U5 ? ? 'EXPRESSION TAG' 10 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4GDL _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;PROTEIN: 10 MG/ML in 0.01M HEPES pH 7.0, 0.3 M NaCl, 0.001 M DTT; RESERVOIR: 0.1M BICINE pH9.0, 0.2 M sodium phosphate dibasic, 18% PEG 3350, vapor diffusion, hanging drop, temperature 293K, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-11-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0092 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_wavelength_list 1.0092 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 # _reflns.entry_id 4GDL _reflns.d_resolution_high 2.8750 _reflns.d_resolution_low 50.000 _reflns.number_obs 12548 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 14.900 _reflns.pdbx_chi_squared 1.044 _reflns.pdbx_redundancy 4.400 _reflns.percent_possible_obs 98.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.900 3.000 ? ? ? 0.541 ? ? 1.042 3.700 ? 1174 92.400 1 1 3.000 3.120 ? ? ? 0.467 ? ? 1.092 4.300 ? 1253 98.400 2 1 3.120 3.270 ? ? ? 0.287 ? ? 1.139 4.500 ? 1232 99.000 3 1 3.270 3.440 ? ? ? 0.208 ? ? 1.122 4.600 ? 1253 99.300 4 1 3.440 3.650 ? ? ? 0.138 ? ? 1.092 4.600 ? 1256 99.600 5 1 3.650 3.940 ? ? ? 0.092 ? ? 0.979 4.500 ? 1268 99.700 6 1 3.940 4.330 ? ? ? 0.065 ? ? 0.929 4.500 ? 1244 99.500 7 1 4.330 4.960 ? ? ? 0.055 ? ? 0.971 4.500 ? 1285 99.700 8 1 4.960 6.240 ? ? ? 0.046 ? ? 0.955 4.300 ? 1281 99.800 9 1 6.240 50.000 ? ? ? 0.031 ? ? 1.118 4.400 ? 1302 98.900 10 1 # _refine.entry_id 4GDL _refine.ls_d_res_high 2.8750 _refine.ls_d_res_low 36.2240 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.4100 _refine.ls_number_reflns_obs 12465 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2186 _refine.ls_R_factor_R_work 0.2146 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2540 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.1300 _refine.ls_number_reflns_R_free 1263 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 138.7687 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.0000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7275 _refine.B_iso_max 283.770 _refine.B_iso_min 64.410 _refine.pdbx_overall_phase_error 32.8400 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3226 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3227 _refine_hist.d_res_high 2.8750 _refine_hist.d_res_low 36.2240 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 3316 0.006 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 4482 0.510 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 479 0.037 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 566 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1256 9.914 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.8753 2.9903 9 86.0000 1081 . 0.3301 0.4281 . 126 . 1207 . . 'X-RAY DIFFRACTION' 2.9903 3.1264 9 97.0000 1222 . 0.3040 0.3126 . 136 . 1358 . . 'X-RAY DIFFRACTION' 3.1264 3.2911 9 98.0000 1257 . 0.2506 0.2864 . 141 . 1398 . . 'X-RAY DIFFRACTION' 3.2911 3.4971 9 99.0000 1253 . 0.2514 0.2919 . 133 . 1386 . . 'X-RAY DIFFRACTION' 3.4971 3.7669 9 99.0000 1258 . 0.2354 0.3062 . 145 . 1403 . . 'X-RAY DIFFRACTION' 3.7669 4.1455 9 99.0000 1269 . 0.2207 0.2620 . 141 . 1410 . . 'X-RAY DIFFRACTION' 4.1455 4.7442 9 100.0000 1267 . 0.1802 0.2081 . 142 . 1409 . . 'X-RAY DIFFRACTION' 4.7442 5.9729 9 100.0000 1287 . 0.2030 0.2265 . 148 . 1435 . . 'X-RAY DIFFRACTION' 5.9729 36.2267 9 99.0000 1308 . 0.2006 0.2450 . 151 . 1459 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4GDL _struct.title 'Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1' _struct.pdbx_descriptor 'Atg12, Atg5, Atg16L1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GDL _struct_keywords.text ;protein-protein conjugate, protein-protein complex, ubiquitin-like protein, autophagy, E3 ligase, ubiquitin-like fold, structural protein, isopeptide bond, Cytoplasm and autophagosomal membranes, protein binding ; _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 31 ? LEU A 43 ? THR A 80 LEU A 92 1 ? 13 HELX_P HELX_P2 2 GLU A 66 ? GLY A 75 ? GLU A 115 GLY A 124 1 ? 10 HELX_P HELX_P3 3 ASP B 4 ? PHE B 13 ? ASP B 4 PHE B 13 1 ? 10 HELX_P HELX_P4 4 TYR B 44 ? VAL B 48 ? TYR B 44 VAL B 48 5 ? 5 HELX_P HELX_P5 5 ASP B 50 ? LYS B 58 ? ASP B 50 LYS B 58 1 ? 9 HELX_P HELX_P6 6 PRO B 82 ? ALA B 91 ? PRO B 82 ALA B 91 1 ? 10 HELX_P HELX_P7 7 SER B 117 ? LYS B 138 ? SER B 117 LYS B 138 1 ? 22 HELX_P HELX_P8 8 GLN B 146 ? ASN B 159 ? GLN B 146 ASN B 159 1 ? 14 HELX_P HELX_P9 9 ARG B 161 ? ARG B 170 ? ARG B 161 ARG B 170 1 ? 10 HELX_P HELX_P10 10 LYS B 171 ? GLU B 174 ? LYS B 171 GLU B 174 5 ? 4 HELX_P HELX_P11 11 THR B 214 ? CYS B 223 ? THR B 214 CYS B 223 1 ? 10 HELX_P HELX_P12 12 PRO B 250 ? LEU B 258 ? PRO B 250 LEU B 258 1 ? 9 HELX_P HELX_P13 13 PRO C 4 ? GLN C 21 ? PRO C 11 GLN C 28 1 ? 18 HELX_P HELX_P14 14 GLN C 21 ? LEU C 35 ? GLN C 28 LEU C 42 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B ALA 95 O ? ? ? 1_555 D NA . NA ? ? B ALA 95 B NA 301 1_555 ? ? ? ? ? ? ? 2.245 ? metalc2 metalc ? ? B ASN 99 OD1 ? ? ? 1_555 D NA . NA ? ? B ASN 99 B NA 301 1_555 ? ? ? ? ? ? ? 2.407 ? metalc3 metalc ? ? B PRO 97 O ? ? ? 1_555 D NA . NA ? ? B PRO 97 B NA 301 1_555 ? ? ? ? ? ? ? 2.680 ? covale1 covale ? ? A GLY 91 C ? ? ? 1_555 B LYS 130 NZ ? ? A GLY 140 B LYS 130 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 14 A . ? GLY 63 A ASP 15 A ? ASP 64 A 1 2.84 2 LEU 96 B . ? LEU 96 B PRO 97 B ? PRO 97 B 1 -4.26 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 23 ? GLU A 27 ? LYS A 72 GLU A 76 A 2 LYS A 5 ? ALA A 12 ? LYS A 54 ALA A 61 A 3 LYS A 79 ? CYS A 85 ? LYS A 128 CYS A 134 A 4 PHE A 52 ? VAL A 55 ? PHE A 101 VAL A 104 B 1 TYR B 35 ? PRO B 40 ? TYR B 35 PRO B 40 B 2 ARG B 15 ? LEU B 22 ? ARG B 15 LEU B 22 B 3 TRP B 98 ? HIS B 103 ? TRP B 98 HIS B 103 B 4 TRP B 69 ? TYR B 72 ? TRP B 69 TYR B 72 B 5 THR B 75 ? PRO B 76 ? THR B 75 PRO B 76 C 1 PHE B 187 ? TYR B 190 ? PHE B 187 TYR B 190 C 2 LEU B 265 ? PRO B 271 ? LEU B 265 PRO B 271 C 3 ASN B 236 ? MET B 239 ? ASN B 236 MET B 239 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP A 24 ? O TRP A 73 N ILE A 8 ? N ILE A 57 A 2 3 N LEU A 9 ? N LEU A 58 O LEU A 82 ? O LEU A 131 A 3 4 O CYS A 85 ? O CYS A 134 N PHE A 52 ? N PHE A 101 B 1 2 O TYR B 35 ? O TYR B 35 N PHE B 20 ? N PHE B 20 B 2 3 N PRO B 17 ? N PRO B 17 O TRP B 98 ? O TRP B 98 B 3 4 O THR B 101 ? O THR B 101 N GLU B 71 ? N GLU B 71 B 4 5 N TYR B 72 ? N TYR B 72 O THR B 75 ? O THR B 75 C 1 2 N TYR B 190 ? N TYR B 190 O ILE B 267 ? O ILE B 267 C 2 3 O ILE B 270 ? O ILE B 270 N GLN B 237 ? N GLN B 237 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE NA B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ALA B 95 ? ALA B 95 . ? 1_555 ? 2 AC1 3 PRO B 97 ? PRO B 97 . ? 1_555 ? 3 AC1 3 ASN B 99 ? ASN B 99 . ? 1_555 ? # _atom_sites.entry_id 4GDL _atom_sites.fract_transf_matrix[1][1] 0.007321 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006151 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017124 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014228 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 50 ? ? ? A . n A 1 2 SER 2 51 ? ? ? A . n A 1 3 LYS 3 52 ? ? ? A . n A 1 4 LYS 4 53 53 LYS LYS A . n A 1 5 LYS 5 54 54 LYS LYS A . n A 1 6 ILE 6 55 55 ILE ILE A . n A 1 7 ASP 7 56 56 ASP ASP A . n A 1 8 ILE 8 57 57 ILE ILE A . n A 1 9 LEU 9 58 58 LEU LEU A . n A 1 10 LEU 10 59 59 LEU LEU A . n A 1 11 LYS 11 60 60 LYS LYS A . n A 1 12 ALA 12 61 61 ALA ALA A . n A 1 13 VAL 13 62 62 VAL VAL A . n A 1 14 GLY 14 63 63 GLY GLY A . n A 1 15 ASP 15 64 64 ASP ASP A . n A 1 16 THR 16 65 65 THR THR A . n A 1 17 PRO 17 66 66 PRO PRO A . n A 1 18 ILE 18 67 67 ILE ILE A . n A 1 19 MET 19 68 68 MET MET A . n A 1 20 LYS 20 69 69 LYS LYS A . n A 1 21 THR 21 70 70 THR THR A . n A 1 22 LYS 22 71 71 LYS LYS A . n A 1 23 LYS 23 72 72 LYS LYS A . n A 1 24 TRP 24 73 73 TRP TRP A . n A 1 25 ALA 25 74 74 ALA ALA A . n A 1 26 VAL 26 75 75 VAL VAL A . n A 1 27 GLU 27 76 76 GLU GLU A . n A 1 28 ARG 28 77 77 ARG ARG A . n A 1 29 THR 29 78 78 THR THR A . n A 1 30 ARG 30 79 79 ARG ARG A . n A 1 31 THR 31 80 80 THR THR A . n A 1 32 ILE 32 81 81 ILE ILE A . n A 1 33 GLN 33 82 82 GLN GLN A . n A 1 34 GLY 34 83 83 GLY GLY A . n A 1 35 LEU 35 84 84 LEU LEU A . n A 1 36 ILE 36 85 85 ILE ILE A . n A 1 37 ASP 37 86 86 ASP ASP A . n A 1 38 PHE 38 87 87 PHE PHE A . n A 1 39 ILE 39 88 88 ILE ILE A . n A 1 40 LYS 40 89 89 LYS LYS A . n A 1 41 LYS 41 90 90 LYS LYS A . n A 1 42 PHE 42 91 91 PHE PHE A . n A 1 43 LEU 43 92 92 LEU LEU A . n A 1 44 LYS 44 93 93 LYS LYS A . n A 1 45 LEU 45 94 94 LEU LEU A . n A 1 46 VAL 46 95 95 VAL VAL A . n A 1 47 ALA 47 96 96 ALA ALA A . n A 1 48 SER 48 97 97 SER SER A . n A 1 49 GLU 49 98 98 GLU GLU A . n A 1 50 GLN 50 99 99 GLN GLN A . n A 1 51 LEU 51 100 100 LEU LEU A . n A 1 52 PHE 52 101 101 PHE PHE A . n A 1 53 ILE 53 102 102 ILE ILE A . n A 1 54 TYR 54 103 103 TYR TYR A . n A 1 55 VAL 55 104 104 VAL VAL A . n A 1 56 ASN 56 105 105 ASN ASN A . n A 1 57 GLN 57 106 106 GLN GLN A . n A 1 58 SER 58 107 107 SER SER A . n A 1 59 PHE 59 108 108 PHE PHE A . n A 1 60 ALA 60 109 109 ALA ALA A . n A 1 61 PRO 61 110 110 PRO PRO A . n A 1 62 SER 62 111 111 SER SER A . n A 1 63 PRO 63 112 112 PRO PRO A . n A 1 64 ASP 64 113 113 ASP ASP A . n A 1 65 GLN 65 114 114 GLN GLN A . n A 1 66 GLU 66 115 115 GLU GLU A . n A 1 67 VAL 67 116 116 VAL VAL A . n A 1 68 GLY 68 117 117 GLY GLY A . n A 1 69 THR 69 118 118 THR THR A . n A 1 70 LEU 70 119 119 LEU LEU A . n A 1 71 TYR 71 120 120 TYR TYR A . n A 1 72 GLU 72 121 121 GLU GLU A . n A 1 73 CYS 73 122 122 CYS CYS A . n A 1 74 PHE 74 123 123 PHE PHE A . n A 1 75 GLY 75 124 124 GLY GLY A . n A 1 76 SER 76 125 125 SER SER A . n A 1 77 ASP 77 126 126 ASP ASP A . n A 1 78 GLY 78 127 127 GLY GLY A . n A 1 79 LYS 79 128 128 LYS LYS A . n A 1 80 LEU 80 129 129 LEU LEU A . n A 1 81 VAL 81 130 130 VAL VAL A . n A 1 82 LEU 82 131 131 LEU LEU A . n A 1 83 HIS 83 132 132 HIS HIS A . n A 1 84 TYR 84 133 133 TYR TYR A . n A 1 85 CYS 85 134 134 CYS CYS A . n A 1 86 LYS 86 135 135 LYS LYS A . n A 1 87 SER 87 136 136 SER SER A . n A 1 88 GLN 88 137 137 GLN GLN A . n A 1 89 ALA 89 138 138 ALA ALA A . n A 1 90 TRP 90 139 139 TRP TRP A . n A 1 91 GLY 91 140 140 GLY GLY A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 THR 2 2 ? ? ? B . n B 2 3 ASP 3 3 3 ASP ASP B . n B 2 4 ASP 4 4 4 ASP ASP B . n B 2 5 LYS 5 5 5 LYS LYS B . n B 2 6 ASP 6 6 6 ASP ASP B . n B 2 7 VAL 7 7 7 VAL VAL B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 ARG 9 9 9 ARG ARG B . n B 2 10 ASP 10 10 10 ASP ASP B . n B 2 11 VAL 11 11 11 VAL VAL B . n B 2 12 TRP 12 12 12 TRP TRP B . n B 2 13 PHE 13 13 13 PHE PHE B . n B 2 14 GLY 14 14 14 GLY GLY B . n B 2 15 ARG 15 15 15 ARG ARG B . n B 2 16 ILE 16 16 16 ILE ILE B . n B 2 17 PRO 17 17 17 PRO PRO B . n B 2 18 THR 18 18 18 THR THR B . n B 2 19 CYS 19 19 19 CYS CYS B . n B 2 20 PHE 20 20 20 PHE PHE B . n B 2 21 THR 21 21 21 THR THR B . n B 2 22 LEU 22 22 22 LEU LEU B . n B 2 23 TYR 23 23 23 TYR TYR B . n B 2 24 GLN 24 24 24 GLN GLN B . n B 2 25 ASP 25 25 25 ASP ASP B . n B 2 26 GLU 26 26 26 GLU GLU B . n B 2 27 ILE 27 27 27 ILE ILE B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 GLU 29 29 29 GLU GLU B . n B 2 30 ARG 30 30 30 ARG ARG B . n B 2 31 GLU 31 31 31 GLU GLU B . n B 2 32 ALA 32 32 32 ALA ALA B . n B 2 33 GLU 33 33 33 GLU GLU B . n B 2 34 PRO 34 34 34 PRO PRO B . n B 2 35 TYR 35 35 35 TYR TYR B . n B 2 36 TYR 36 36 36 TYR TYR B . n B 2 37 LEU 37 37 37 LEU LEU B . n B 2 38 LEU 38 38 38 LEU LEU B . n B 2 39 LEU 39 39 39 LEU LEU B . n B 2 40 PRO 40 40 40 PRO PRO B . n B 2 41 ARG 41 41 41 ARG ARG B . n B 2 42 VAL 42 42 42 VAL VAL B . n B 2 43 SER 43 43 43 SER SER B . n B 2 44 TYR 44 44 44 TYR TYR B . n B 2 45 LEU 45 45 45 LEU LEU B . n B 2 46 THR 46 46 46 THR THR B . n B 2 47 LEU 47 47 47 LEU LEU B . n B 2 48 VAL 48 48 48 VAL VAL B . n B 2 49 THR 49 49 49 THR THR B . n B 2 50 ASP 50 50 50 ASP ASP B . n B 2 51 LYS 51 51 51 LYS LYS B . n B 2 52 VAL 52 52 52 VAL VAL B . n B 2 53 LYS 53 53 53 LYS LYS B . n B 2 54 LYS 54 54 54 LYS LYS B . n B 2 55 HIS 55 55 55 HIS HIS B . n B 2 56 PHE 56 56 56 PHE PHE B . n B 2 57 GLN 57 57 57 GLN GLN B . n B 2 58 LYS 58 58 58 LYS LYS B . n B 2 59 VAL 59 59 59 VAL VAL B . n B 2 60 MET 60 60 60 MET MET B . n B 2 61 ARG 61 61 61 ARG ARG B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 GLU 63 63 63 GLU GLU B . n B 2 64 ASP 64 64 64 ASP ASP B . n B 2 65 ILE 65 65 65 ILE ILE B . n B 2 66 SER 66 66 66 SER SER B . n B 2 67 GLU 67 67 67 GLU GLU B . n B 2 68 ILE 68 68 68 ILE ILE B . n B 2 69 TRP 69 69 69 TRP TRP B . n B 2 70 PHE 70 70 70 PHE PHE B . n B 2 71 GLU 71 71 71 GLU GLU B . n B 2 72 TYR 72 72 72 TYR TYR B . n B 2 73 GLU 73 73 73 GLU GLU B . n B 2 74 GLY 74 74 74 GLY GLY B . n B 2 75 THR 75 75 75 THR THR B . n B 2 76 PRO 76 76 76 PRO PRO B . n B 2 77 LEU 77 77 77 LEU LEU B . n B 2 78 LYS 78 78 78 LYS LYS B . n B 2 79 TRP 79 79 79 TRP TRP B . n B 2 80 HIS 80 80 80 HIS HIS B . n B 2 81 TYR 81 81 81 TYR TYR B . n B 2 82 PRO 82 82 82 PRO PRO B . n B 2 83 ILE 83 83 83 ILE ILE B . n B 2 84 GLY 84 84 84 GLY GLY B . n B 2 85 LEU 85 85 85 LEU LEU B . n B 2 86 LEU 86 86 86 LEU LEU B . n B 2 87 PHE 87 87 87 PHE PHE B . n B 2 88 ASP 88 88 88 ASP ASP B . n B 2 89 LEU 89 89 89 LEU LEU B . n B 2 90 LEU 90 90 90 LEU LEU B . n B 2 91 ALA 91 91 91 ALA ALA B . n B 2 92 SER 92 92 92 SER SER B . n B 2 93 SER 93 93 93 SER SER B . n B 2 94 SER 94 94 94 SER SER B . n B 2 95 ALA 95 95 95 ALA ALA B . n B 2 96 LEU 96 96 96 LEU LEU B . n B 2 97 PRO 97 97 97 PRO PRO B . n B 2 98 TRP 98 98 98 TRP TRP B . n B 2 99 ASN 99 99 99 ASN ASN B . n B 2 100 ILE 100 100 100 ILE ILE B . n B 2 101 THR 101 101 101 THR THR B . n B 2 102 VAL 102 102 102 VAL VAL B . n B 2 103 HIS 103 103 103 HIS HIS B . n B 2 104 PHE 104 104 104 PHE PHE B . n B 2 105 LYS 105 105 105 LYS LYS B . n B 2 106 SER 106 106 106 SER SER B . n B 2 107 PHE 107 107 107 PHE PHE B . n B 2 108 PRO 108 108 108 PRO PRO B . n B 2 109 GLU 109 109 109 GLU GLU B . n B 2 110 LYS 110 110 110 LYS LYS B . n B 2 111 ASP 111 111 111 ASP ASP B . n B 2 112 LEU 112 112 112 LEU LEU B . n B 2 113 LEU 113 113 113 LEU LEU B . n B 2 114 HIS 114 114 114 HIS HIS B . n B 2 115 CYS 115 115 115 CYS CYS B . n B 2 116 PRO 116 116 116 PRO PRO B . n B 2 117 SER 117 117 117 SER SER B . n B 2 118 LYS 118 118 118 LYS LYS B . n B 2 119 ASP 119 119 119 ASP ASP B . n B 2 120 ALA 120 120 120 ALA ALA B . n B 2 121 ILE 121 121 121 ILE ILE B . n B 2 122 GLU 122 122 122 GLU GLU B . n B 2 123 ALA 123 123 123 ALA ALA B . n B 2 124 HIS 124 124 124 HIS HIS B . n B 2 125 PHE 125 125 125 PHE PHE B . n B 2 126 MET 126 126 126 MET MET B . n B 2 127 SER 127 127 127 SER SER B . n B 2 128 CYS 128 128 128 CYS CYS B . n B 2 129 MET 129 129 129 MET MET B . n B 2 130 LYS 130 130 130 LYS LYS B . n B 2 131 GLU 131 131 131 GLU GLU B . n B 2 132 ALA 132 132 132 ALA ALA B . n B 2 133 ASP 133 133 133 ASP ASP B . n B 2 134 ALA 134 134 134 ALA ALA B . n B 2 135 LEU 135 135 135 LEU LEU B . n B 2 136 LYS 136 136 136 LYS LYS B . n B 2 137 HIS 137 137 137 HIS HIS B . n B 2 138 LYS 138 138 138 LYS LYS B . n B 2 139 SER 139 139 139 SER SER B . n B 2 140 GLN 140 140 140 GLN GLN B . n B 2 141 VAL 141 141 141 VAL VAL B . n B 2 142 ILE 142 142 142 ILE ILE B . n B 2 143 ASN 143 143 143 ASN ASN B . n B 2 144 GLU 144 144 144 GLU GLU B . n B 2 145 MET 145 145 145 MET MET B . n B 2 146 GLN 146 146 146 GLN GLN B . n B 2 147 LYS 147 147 147 LYS LYS B . n B 2 148 LYS 148 148 148 LYS LYS B . n B 2 149 ASP 149 149 149 ASP ASP B . n B 2 150 HIS 150 150 150 HIS HIS B . n B 2 151 LYS 151 151 151 LYS LYS B . n B 2 152 GLN 152 152 152 GLN GLN B . n B 2 153 LEU 153 153 153 LEU LEU B . n B 2 154 TRP 154 154 154 TRP TRP B . n B 2 155 MET 155 155 155 MET MET B . n B 2 156 GLY 156 156 156 GLY GLY B . n B 2 157 LEU 157 157 157 LEU LEU B . n B 2 158 GLN 158 158 158 GLN GLN B . n B 2 159 ASN 159 159 159 ASN ASN B . n B 2 160 ASP 160 160 160 ASP ASP B . n B 2 161 ARG 161 161 161 ARG ARG B . n B 2 162 PHE 162 162 162 PHE PHE B . n B 2 163 ASP 163 163 163 ASP ASP B . n B 2 164 GLN 164 164 164 GLN GLN B . n B 2 165 PHE 165 165 165 PHE PHE B . n B 2 166 TRP 166 166 166 TRP TRP B . n B 2 167 ALA 167 167 167 ALA ALA B . n B 2 168 ILE 168 168 168 ILE ILE B . n B 2 169 ASN 169 169 169 ASN ASN B . n B 2 170 ARG 170 170 170 ARG ARG B . n B 2 171 LYS 171 171 171 LYS LYS B . n B 2 172 LEU 172 172 172 LEU LEU B . n B 2 173 MET 173 173 173 MET MET B . n B 2 174 GLU 174 174 174 GLU GLU B . n B 2 175 TYR 175 175 175 TYR TYR B . n B 2 176 PRO 176 176 176 PRO PRO B . n B 2 177 ALA 177 177 177 ALA ALA B . n B 2 178 GLU 178 178 178 GLU GLU B . n B 2 179 GLU 179 179 179 GLU GLU B . n B 2 180 ASN 180 180 180 ASN ASN B . n B 2 181 GLY 181 181 181 GLY GLY B . n B 2 182 PHE 182 182 182 PHE PHE B . n B 2 183 ARG 183 183 183 ARG ARG B . n B 2 184 TYR 184 184 184 TYR TYR B . n B 2 185 ILE 185 185 185 ILE ILE B . n B 2 186 PRO 186 186 186 PRO PRO B . n B 2 187 PHE 187 187 187 PHE PHE B . n B 2 188 ARG 188 188 188 ARG ARG B . n B 2 189 ILE 189 189 189 ILE ILE B . n B 2 190 TYR 190 190 190 TYR TYR B . n B 2 191 GLN 191 191 191 GLN GLN B . n B 2 192 THR 192 192 192 THR THR B . n B 2 193 THR 193 193 193 THR THR B . n B 2 194 THR 194 194 194 THR THR B . n B 2 195 GLU 195 195 195 GLU GLU B . n B 2 196 ARG 196 196 196 ARG ARG B . n B 2 197 PRO 197 197 197 PRO PRO B . n B 2 198 PHE 198 198 198 PHE PHE B . n B 2 199 ILE 199 199 199 ILE ILE B . n B 2 200 GLN 200 200 200 GLN GLN B . n B 2 201 LYS 201 201 201 LYS LYS B . n B 2 202 LEU 202 202 202 LEU LEU B . n B 2 203 PHE 203 203 203 PHE PHE B . n B 2 204 ARG 204 204 204 ARG ARG B . n B 2 205 PRO 205 205 205 PRO PRO B . n B 2 206 VAL 206 206 206 VAL VAL B . n B 2 207 ALA 207 207 207 ALA ALA B . n B 2 208 ALA 208 208 208 ALA ALA B . n B 2 209 ASP 209 209 209 ASP ASP B . n B 2 210 GLY 210 210 210 GLY GLY B . n B 2 211 GLN 211 211 211 GLN GLN B . n B 2 212 LEU 212 212 212 LEU LEU B . n B 2 213 HIS 213 213 213 HIS HIS B . n B 2 214 THR 214 214 214 THR THR B . n B 2 215 LEU 215 215 215 LEU LEU B . n B 2 216 GLY 216 216 216 GLY GLY B . n B 2 217 ASP 217 217 217 ASP ASP B . n B 2 218 LEU 218 218 218 LEU LEU B . n B 2 219 LEU 219 219 219 LEU LEU B . n B 2 220 LYS 220 220 220 LYS LYS B . n B 2 221 GLU 221 221 221 GLU GLU B . n B 2 222 VAL 222 222 222 VAL VAL B . n B 2 223 CYS 223 223 223 CYS CYS B . n B 2 224 PRO 224 224 224 PRO PRO B . n B 2 225 SER 225 225 225 SER SER B . n B 2 226 ALA 226 226 226 ALA ALA B . n B 2 227 ILE 227 227 227 ILE ILE B . n B 2 228 ASP 228 228 ? ? ? B . n B 2 229 PRO 229 229 ? ? ? B . n B 2 230 GLU 230 230 ? ? ? B . n B 2 231 ASP 231 231 ? ? ? B . n B 2 232 GLY 232 232 ? ? ? B . n B 2 233 GLU 233 233 ? ? ? B . n B 2 234 LYS 234 234 ? ? ? B . n B 2 235 LYS 235 235 235 LYS LYS B . n B 2 236 ASN 236 236 236 ASN ASN B . n B 2 237 GLN 237 237 237 GLN GLN B . n B 2 238 VAL 238 238 238 VAL VAL B . n B 2 239 MET 239 239 239 MET MET B . n B 2 240 ILE 240 240 240 ILE ILE B . n B 2 241 HIS 241 241 241 HIS HIS B . n B 2 242 GLY 242 242 242 GLY GLY B . n B 2 243 ILE 243 243 243 ILE ILE B . n B 2 244 GLU 244 244 244 GLU GLU B . n B 2 245 PRO 245 245 245 PRO PRO B . n B 2 246 MET 246 246 246 MET MET B . n B 2 247 LEU 247 247 247 LEU LEU B . n B 2 248 GLU 248 248 248 GLU GLU B . n B 2 249 THR 249 249 249 THR THR B . n B 2 250 PRO 250 250 250 PRO PRO B . n B 2 251 LEU 251 251 251 LEU LEU B . n B 2 252 GLN 252 252 252 GLN GLN B . n B 2 253 TRP 253 253 253 TRP TRP B . n B 2 254 LEU 254 254 254 LEU LEU B . n B 2 255 SER 255 255 255 SER SER B . n B 2 256 GLU 256 256 256 GLU GLU B . n B 2 257 HIS 257 257 257 HIS HIS B . n B 2 258 LEU 258 258 258 LEU LEU B . n B 2 259 SER 259 259 259 SER SER B . n B 2 260 TYR 260 260 260 TYR TYR B . n B 2 261 PRO 261 261 261 PRO PRO B . n B 2 262 ASP 262 262 262 ASP ASP B . n B 2 263 ASN 263 263 263 ASN ASN B . n B 2 264 PHE 264 264 264 PHE PHE B . n B 2 265 LEU 265 265 265 LEU LEU B . n B 2 266 HIS 266 266 266 HIS HIS B . n B 2 267 ILE 267 267 267 ILE ILE B . n B 2 268 SER 268 268 268 SER SER B . n B 2 269 ILE 269 269 269 ILE ILE B . n B 2 270 ILE 270 270 270 ILE ILE B . n B 2 271 PRO 271 271 271 PRO PRO B . n B 2 272 GLN 272 272 272 GLN GLN B . n B 2 273 PRO 273 273 273 PRO PRO B . n B 2 274 THR 274 274 274 THR THR B . n B 2 275 ASP 275 275 ? ? ? B . n C 3 1 SER 1 8 ? ? ? C . n C 3 2 HIS 2 9 ? ? ? C . n C 3 3 MET 3 10 10 MET MET C . n C 3 4 PRO 4 11 11 PRO PRO C . n C 3 5 ARG 5 12 12 ARG ARG C . n C 3 6 TRP 6 13 13 TRP TRP C . n C 3 7 LYS 7 14 14 LYS LYS C . n C 3 8 ARG 8 15 15 ARG ARG C . n C 3 9 HIS 9 16 16 HIS HIS C . n C 3 10 ILE 10 17 17 ILE ILE C . n C 3 11 SER 11 18 18 SER SER C . n C 3 12 GLU 12 19 19 GLU GLU C . n C 3 13 GLN 13 20 20 GLN GLN C . n C 3 14 LEU 14 21 21 LEU LEU C . n C 3 15 ARG 15 22 22 ARG ARG C . n C 3 16 ARG 16 23 23 ARG ARG C . n C 3 17 ARG 17 24 24 ARG ARG C . n C 3 18 ASP 18 25 25 ASP ASP C . n C 3 19 ARG 19 26 26 ARG ARG C . n C 3 20 LEU 20 27 27 LEU LEU C . n C 3 21 GLN 21 28 28 GLN GLN C . n C 3 22 ARG 22 29 29 ARG ARG C . n C 3 23 GLN 23 30 30 GLN GLN C . n C 3 24 ALA 24 31 31 ALA ALA C . n C 3 25 PHE 25 32 32 PHE PHE C . n C 3 26 GLU 26 33 33 GLU GLU C . n C 3 27 GLU 27 34 34 GLU GLU C . n C 3 28 ILE 28 35 35 ILE ILE C . n C 3 29 ILE 29 36 36 ILE ILE C . n C 3 30 LEU 30 37 37 LEU LEU C . n C 3 31 GLN 31 38 38 GLN GLN C . n C 3 32 TYR 32 39 39 TYR TYR C . n C 3 33 ASN 33 40 40 ASN ASN C . n C 3 34 LYS 34 41 41 LYS LYS C . n C 3 35 LEU 35 42 42 LEU LEU C . n C 3 36 LEU 36 43 43 LEU LEU C . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NA _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NA _pdbx_nonpoly_scheme.auth_mon_id NA _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B ALA 95 ? B ALA 95 ? 1_555 NA ? D NA . ? B NA 301 ? 1_555 OD1 ? B ASN 99 ? B ASN 99 ? 1_555 152.4 ? 2 O ? B ALA 95 ? B ALA 95 ? 1_555 NA ? D NA . ? B NA 301 ? 1_555 O ? B PRO 97 ? B PRO 97 ? 1_555 82.7 ? 3 OD1 ? B ASN 99 ? B ASN 99 ? 1_555 NA ? D NA . ? B NA 301 ? 1_555 O ? B PRO 97 ? B PRO 97 ? 1_555 92.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-05 2 'Structure model' 1 1 2013-01-02 3 'Structure model' 1 2 2013-01-16 4 'Structure model' 1 3 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 131.9098 14.7466 14.7212 0.8731 1.5639 1.5721 0.5559 0.1543 0.5159 3.6238 3.2452 6.0662 2.7977 0.6736 0.8570 -0.9306 0.1603 0.8281 1.6393 1.6291 1.6733 -1.4487 -0.2069 -1.6583 'X-RAY DIFFRACTION' 2 ? refined 129.9928 6.0654 15.7652 0.6716 1.8883 1.1547 0.1147 -0.2917 -0.1696 7.2938 3.7272 5.8908 -3.3147 -4.1637 -0.7557 0.3887 -0.5727 0.0498 1.6713 -0.3986 0.9357 -0.4764 -0.0244 -2.8717 'X-RAY DIFFRACTION' 3 ? refined 133.6834 -2.2909 12.3846 1.1311 1.3008 1.5979 -0.1251 0.0261 -0.1878 6.5054 3.8222 3.2700 4.9979 -2.7965 -1.8131 -1.4633 1.1251 0.3787 0.6937 -2.0906 -0.2622 -1.9660 1.6633 0.6728 'X-RAY DIFFRACTION' 4 ? refined 140.0424 11.9384 13.0095 0.9782 1.6464 1.2002 0.2414 -0.1224 0.1838 9.7311 8.8877 3.3538 7.6172 -0.5108 2.8401 -0.3554 0.8627 -0.6039 1.6975 0.9582 0.3778 -1.0900 -1.1970 0.2940 'X-RAY DIFFRACTION' 5 ? refined 140.1161 -0.3734 4.6258 1.5600 2.3461 1.7240 0.3194 -0.2346 -0.1557 3.7752 9.6962 2.3201 5.6888 -0.1132 1.3887 0.0168 0.8880 0.0609 2.3705 0.7689 0.5925 -1.8665 -0.1597 -1.8648 'X-RAY DIFFRACTION' 6 ? refined 158.9248 -6.7631 28.9032 0.6411 0.9328 0.9535 -0.0160 0.0173 -0.2245 7.0139 6.3927 7.1094 -1.4957 1.3425 -2.9860 0.2765 -0.0774 0.0475 0.2747 -1.2077 0.9176 -0.3156 0.7319 -0.3263 'X-RAY DIFFRACTION' 7 ? refined 157.4494 3.1499 6.6807 1.1155 2.5459 0.9501 0.0125 -0.1655 -0.2036 4.2388 3.7026 6.3635 -2.2128 0.0823 -3.8407 0.3081 -0.0315 -0.4028 3.5878 -0.2294 0.2101 -0.8773 0.2615 1.0743 'X-RAY DIFFRACTION' 8 ? refined 158.9984 18.7852 20.0348 0.8807 0.9552 1.0515 -0.0844 -0.0671 0.4015 6.8884 4.0508 2.8113 -0.0630 1.7123 1.5365 -0.4282 0.1234 0.2267 1.7108 2.1212 0.0233 -0.3057 -0.6817 0.4777 'X-RAY DIFFRACTION' 9 ? refined 175.8442 3.7178 25.6581 0.7444 1.4281 0.7622 -0.0613 0.2367 0.0818 7.7345 3.2343 4.4717 -4.1351 4.4435 -2.2397 0.0006 -0.4194 0.7474 0.9326 1.0446 -0.4746 -0.1225 -0.1523 0.8516 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 53 A 61 ;chain 'A' and (resseq 53:61) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 62 A 91 ;chain 'A' and (resseq 62:91) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 92 A 104 ;chain 'A' and (resseq 92:104) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 105 A 134 ;chain 'A' and (resseq 105:134) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 135 A 140 ;chain 'A' and (resseq 135:140) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 3 B 117 ;chain 'B' and (resseq 3:117) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 118 B 173 ;chain 'B' and (resseq 118:173) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 174 B 274 ;chain 'B' and (resseq 174:274) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 C 10 C 43 ;chain 'C' and (resseq 10:43) ; ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.8_1069 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _pdbx_entry_details.entry_id 4GDL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;THERE IS AN ISOPEPTIDE LINKAGE BETWEEN RESIDUE GLY140 OF ATG12 AND LYS130 OF ATG5. THE ATG12~ATG5 CONJUGATE WAS GENERATED BY CO-EXPRESSING ATG12 AND ATG5 FROM PACYC DUET-1 AND ATG7 AND ATG10 FROM PCDF DUET-1 IN E. COLI ; _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 107 ? ? -133.91 -60.10 2 1 SER B 43 ? ? -107.38 -164.54 3 1 SER B 66 ? ? -146.50 -144.37 4 1 PHE B 104 ? ? -140.11 -38.90 5 1 GLN B 191 ? ? -166.06 118.20 6 1 CYS B 223 ? ? -156.28 65.91 7 1 ALA B 226 ? ? -159.42 17.75 8 1 LEU B 265 ? ? -101.67 75.59 9 1 PRO B 273 ? ? -61.62 -163.49 10 1 GLN C 28 ? ? -108.70 -67.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 50 ? A GLY 1 2 1 Y 1 A SER 51 ? A SER 2 3 1 Y 1 A LYS 52 ? A LYS 3 4 1 Y 1 B MET 1 ? B MET 1 5 1 Y 1 B THR 2 ? B THR 2 6 1 Y 1 B ASP 228 ? B ASP 228 7 1 Y 1 B PRO 229 ? B PRO 229 8 1 Y 1 B GLU 230 ? B GLU 230 9 1 Y 1 B ASP 231 ? B ASP 231 10 1 Y 1 B GLY 232 ? B GLY 232 11 1 Y 1 B GLU 233 ? B GLU 233 12 1 Y 1 B LYS 234 ? B LYS 234 13 1 Y 1 B ASP 275 ? B ASP 275 14 1 Y 1 C SER 8 ? C SER 1 15 1 Y 1 C HIS 9 ? C HIS 2 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA #