data_4GV9 # _entry.id 4GV9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GV9 pdb_00004gv9 10.2210/pdb4gv9/pdb NDB NA2235 ? ? RCSB RCSB074675 ? ? WWPDB D_1000074675 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-01 2 'Structure model' 1 1 2013-05-15 3 'Structure model' 1 2 2013-07-10 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 4 'Structure model' '_struct_ref_seq_dif.details' 41 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GV9 _pdbx_database_status.recvd_initial_deposition_date 2012-08-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3MWP domain unspecified PDB 4GV6 'soaking with Mn2+ for 1 min' unspecified PDB 4GV3 'soaking with Mn2+ for 1.5 min' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, X.' 1 'Huang, Q.' 2 'Wang, W.' 3 'Dong, H.' 4 'Ly, H.' 5 'Liang, Y.' 6 'Dong, C.' 7 # _citation.id primary _citation.title 'Structures of Arenaviral Nucleoproteins with Triphosphate dsRNA Reveal a Unique Mechanism of Immune Suppression.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 16949 _citation.page_last 16959 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23615902 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.420521 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, X.' 1 ? primary 'Huang, Q.' 2 ? primary 'Wang, W.' 3 ? primary 'Dong, H.' 4 ? primary 'Ly, H.' 5 ? primary 'Liang, Y.' 6 ? primary 'Dong, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(GTP)P*GP*GP*C)-3') ; 1455.801 1 ? ? 'UNP residues 364-569' ? 2 polymer syn ;RNA (5'-R(P*CP*GP*CP*CP*C)-3') ; 1520.976 1 ? ? ? ? 3 polymer man Nucleoprotein 24013.627 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 3 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 6 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Nucleocapsid protein, Protein N' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GTP)GGC' GGGC E ? 2 polyribonucleotide no no CGCCC CGCCC F ? 3 'polypeptide(L)' no no ;AMDHVEFGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVT DLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEK KKRGGKEEITPHCALMDCIMFDAAVSGGLNTSVLRAVLPRDMVFRTSTPRVVL ; ;AMDHVEFGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVT DLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEK KKRGGKEEITPHCALMDCIMFDAAVSGGLNTSVLRAVLPRDMVFRTSTPRVVL ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 'ZINC ION' ZN 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 G n 1 4 C n 2 1 C n 2 2 G n 2 3 C n 2 4 C n 2 5 C n 3 1 ALA n 3 2 MET n 3 3 ASP n 3 4 HIS n 3 5 VAL n 3 6 GLU n 3 7 PHE n 3 8 GLY n 3 9 LEU n 3 10 THR n 3 11 TYR n 3 12 SER n 3 13 GLN n 3 14 LEU n 3 15 MET n 3 16 THR n 3 17 LEU n 3 18 LYS n 3 19 ASP n 3 20 ALA n 3 21 MET n 3 22 LEU n 3 23 GLN n 3 24 LEU n 3 25 ASP n 3 26 PRO n 3 27 ASN n 3 28 ALA n 3 29 LYS n 3 30 THR n 3 31 TRP n 3 32 MET n 3 33 ASP n 3 34 ILE n 3 35 GLU n 3 36 GLY n 3 37 ARG n 3 38 PRO n 3 39 GLU n 3 40 ASP n 3 41 PRO n 3 42 VAL n 3 43 GLU n 3 44 ILE n 3 45 ALA n 3 46 LEU n 3 47 TYR n 3 48 GLN n 3 49 PRO n 3 50 SER n 3 51 SER n 3 52 GLY n 3 53 CYS n 3 54 TYR n 3 55 ILE n 3 56 HIS n 3 57 PHE n 3 58 PHE n 3 59 ARG n 3 60 GLU n 3 61 PRO n 3 62 THR n 3 63 ASP n 3 64 LEU n 3 65 LYS n 3 66 GLN n 3 67 PHE n 3 68 LYS n 3 69 GLN n 3 70 ASP n 3 71 ALA n 3 72 LYS n 3 73 TYR n 3 74 SER n 3 75 HIS n 3 76 GLY n 3 77 ILE n 3 78 ASP n 3 79 VAL n 3 80 THR n 3 81 ASP n 3 82 LEU n 3 83 PHE n 3 84 ALA n 3 85 THR n 3 86 GLN n 3 87 PRO n 3 88 GLY n 3 89 LEU n 3 90 THR n 3 91 SER n 3 92 ALA n 3 93 VAL n 3 94 ILE n 3 95 ASP n 3 96 ALA n 3 97 LEU n 3 98 PRO n 3 99 ARG n 3 100 ASN n 3 101 MET n 3 102 VAL n 3 103 ILE n 3 104 THR n 3 105 CYS n 3 106 GLN n 3 107 GLY n 3 108 SER n 3 109 ASP n 3 110 ASP n 3 111 ILE n 3 112 ARG n 3 113 LYS n 3 114 LEU n 3 115 LEU n 3 116 GLU n 3 117 SER n 3 118 GLN n 3 119 GLY n 3 120 ARG n 3 121 LYS n 3 122 ASP n 3 123 ILE n 3 124 LYS n 3 125 LEU n 3 126 ILE n 3 127 ASP n 3 128 ILE n 3 129 ALA n 3 130 LEU n 3 131 SER n 3 132 LYS n 3 133 THR n 3 134 ASP n 3 135 SER n 3 136 ARG n 3 137 LYS n 3 138 TYR n 3 139 GLU n 3 140 ASN n 3 141 ALA n 3 142 VAL n 3 143 TRP n 3 144 ASP n 3 145 GLN n 3 146 TYR n 3 147 LYS n 3 148 ASP n 3 149 LEU n 3 150 CYS n 3 151 HIS n 3 152 MET n 3 153 HIS n 3 154 THR n 3 155 GLY n 3 156 VAL n 3 157 VAL n 3 158 VAL n 3 159 GLU n 3 160 LYS n 3 161 LYS n 3 162 LYS n 3 163 ARG n 3 164 GLY n 3 165 GLY n 3 166 LYS n 3 167 GLU n 3 168 GLU n 3 169 ILE n 3 170 THR n 3 171 PRO n 3 172 HIS n 3 173 CYS n 3 174 ALA n 3 175 LEU n 3 176 MET n 3 177 ASP n 3 178 CYS n 3 179 ILE n 3 180 MET n 3 181 PHE n 3 182 ASP n 3 183 ALA n 3 184 ALA n 3 185 VAL n 3 186 SER n 3 187 GLY n 3 188 GLY n 3 189 LEU n 3 190 ASN n 3 191 THR n 3 192 SER n 3 193 VAL n 3 194 LEU n 3 195 ARG n 3 196 ALA n 3 197 VAL n 3 198 LEU n 3 199 PRO n 3 200 ARG n 3 201 ASP n 3 202 MET n 3 203 VAL n 3 204 PHE n 3 205 ARG n 3 206 THR n 3 207 SER n 3 208 THR n 3 209 PRO n 3 210 ARG n 3 211 VAL n 3 212 VAL n 3 213 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name LASV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene N _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain josiah _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lassa virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11622 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Rossetta _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name Plou3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'triphosphated dsRNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 8 8 GTP GTP E . n A 1 2 G 2 9 9 G G E . n A 1 3 G 3 10 10 G G E . n A 1 4 C 4 11 11 C C E . n B 2 1 C 1 1 1 C C F . n B 2 2 G 2 2 2 G G F . n B 2 3 C 3 3 3 C C F . n B 2 4 C 4 4 4 C C F . n B 2 5 C 5 5 5 C C F . n C 3 1 ALA 1 357 ? ? ? A . n C 3 2 MET 2 358 ? ? ? A . n C 3 3 ASP 3 359 ? ? ? A . n C 3 4 HIS 4 360 ? ? ? A . n C 3 5 VAL 5 361 ? ? ? A . n C 3 6 GLU 6 362 ? ? ? A . n C 3 7 PHE 7 363 363 PHE PHE A . n C 3 8 GLY 8 364 364 GLY GLY A . n C 3 9 LEU 9 365 365 LEU LEU A . n C 3 10 THR 10 366 366 THR THR A . n C 3 11 TYR 11 367 367 TYR TYR A . n C 3 12 SER 12 368 368 SER SER A . n C 3 13 GLN 13 369 369 GLN GLN A . n C 3 14 LEU 14 370 370 LEU LEU A . n C 3 15 MET 15 371 371 MET MET A . n C 3 16 THR 16 372 372 THR THR A . n C 3 17 LEU 17 373 373 LEU LEU A . n C 3 18 LYS 18 374 374 LYS LYS A . n C 3 19 ASP 19 375 375 ASP ASP A . n C 3 20 ALA 20 376 376 ALA ALA A . n C 3 21 MET 21 377 377 MET MET A . n C 3 22 LEU 22 378 378 LEU LEU A . n C 3 23 GLN 23 379 379 GLN GLN A . n C 3 24 LEU 24 380 380 LEU LEU A . n C 3 25 ASP 25 381 381 ASP ASP A . n C 3 26 PRO 26 382 382 PRO PRO A . n C 3 27 ASN 27 383 383 ASN ASN A . n C 3 28 ALA 28 384 384 ALA ALA A . n C 3 29 LYS 29 385 385 LYS LYS A . n C 3 30 THR 30 386 386 THR THR A . n C 3 31 TRP 31 387 387 TRP TRP A . n C 3 32 MET 32 388 388 MET MET A . n C 3 33 ASP 33 389 389 ASP ASP A . n C 3 34 ILE 34 390 390 ILE ILE A . n C 3 35 GLU 35 391 391 GLU GLU A . n C 3 36 GLY 36 392 392 GLY GLY A . n C 3 37 ARG 37 393 393 ARG ARG A . n C 3 38 PRO 38 394 394 PRO PRO A . n C 3 39 GLU 39 395 395 GLU GLU A . n C 3 40 ASP 40 396 396 ASP ASP A . n C 3 41 PRO 41 397 397 PRO PRO A . n C 3 42 VAL 42 398 398 VAL VAL A . n C 3 43 GLU 43 399 399 GLU GLU A . n C 3 44 ILE 44 400 400 ILE ILE A . n C 3 45 ALA 45 401 401 ALA ALA A . n C 3 46 LEU 46 402 402 LEU LEU A . n C 3 47 TYR 47 403 403 TYR TYR A . n C 3 48 GLN 48 404 404 GLN GLN A . n C 3 49 PRO 49 405 405 PRO PRO A . n C 3 50 SER 50 406 406 SER SER A . n C 3 51 SER 51 407 407 SER SER A . n C 3 52 GLY 52 408 408 GLY GLY A . n C 3 53 CYS 53 409 409 CYS CYS A . n C 3 54 TYR 54 410 410 TYR TYR A . n C 3 55 ILE 55 411 411 ILE ILE A . n C 3 56 HIS 56 412 412 HIS HIS A . n C 3 57 PHE 57 413 413 PHE PHE A . n C 3 58 PHE 58 414 414 PHE PHE A . n C 3 59 ARG 59 415 415 ARG ARG A . n C 3 60 GLU 60 416 416 GLU GLU A . n C 3 61 PRO 61 417 417 PRO PRO A . n C 3 62 THR 62 418 418 THR THR A . n C 3 63 ASP 63 419 419 ASP ASP A . n C 3 64 LEU 64 420 420 LEU LEU A . n C 3 65 LYS 65 421 421 LYS LYS A . n C 3 66 GLN 66 422 422 GLN GLN A . n C 3 67 PHE 67 423 423 PHE PHE A . n C 3 68 LYS 68 424 424 LYS LYS A . n C 3 69 GLN 69 425 425 GLN GLN A . n C 3 70 ASP 70 426 426 ASP ASP A . n C 3 71 ALA 71 427 427 ALA ALA A . n C 3 72 LYS 72 428 428 LYS LYS A . n C 3 73 TYR 73 429 429 TYR TYR A . n C 3 74 SER 74 430 430 SER SER A . n C 3 75 HIS 75 431 431 HIS HIS A . n C 3 76 GLY 76 432 432 GLY GLY A . n C 3 77 ILE 77 433 433 ILE ILE A . n C 3 78 ASP 78 434 434 ASP ASP A . n C 3 79 VAL 79 435 435 VAL VAL A . n C 3 80 THR 80 436 436 THR THR A . n C 3 81 ASP 81 437 437 ASP ASP A . n C 3 82 LEU 82 438 438 LEU LEU A . n C 3 83 PHE 83 439 439 PHE PHE A . n C 3 84 ALA 84 440 440 ALA ALA A . n C 3 85 THR 85 441 441 THR THR A . n C 3 86 GLN 86 442 442 GLN GLN A . n C 3 87 PRO 87 443 443 PRO PRO A . n C 3 88 GLY 88 444 444 GLY GLY A . n C 3 89 LEU 89 445 445 LEU LEU A . n C 3 90 THR 90 446 446 THR THR A . n C 3 91 SER 91 447 447 SER SER A . n C 3 92 ALA 92 448 448 ALA ALA A . n C 3 93 VAL 93 449 449 VAL VAL A . n C 3 94 ILE 94 450 450 ILE ILE A . n C 3 95 ASP 95 451 451 ASP ASP A . n C 3 96 ALA 96 452 452 ALA ALA A . n C 3 97 LEU 97 453 453 LEU LEU A . n C 3 98 PRO 98 454 454 PRO PRO A . n C 3 99 ARG 99 455 455 ARG ARG A . n C 3 100 ASN 100 456 456 ASN ASN A . n C 3 101 MET 101 457 457 MET MET A . n C 3 102 VAL 102 458 458 VAL VAL A . n C 3 103 ILE 103 459 459 ILE ILE A . n C 3 104 THR 104 460 460 THR THR A . n C 3 105 CYS 105 461 461 CYS CYS A . n C 3 106 GLN 106 462 462 GLN GLN A . n C 3 107 GLY 107 463 463 GLY GLY A . n C 3 108 SER 108 464 464 SER SER A . n C 3 109 ASP 109 465 465 ASP ASP A . n C 3 110 ASP 110 466 466 ASP ASP A . n C 3 111 ILE 111 467 467 ILE ILE A . n C 3 112 ARG 112 468 468 ARG ARG A . n C 3 113 LYS 113 469 469 LYS LYS A . n C 3 114 LEU 114 470 470 LEU LEU A . n C 3 115 LEU 115 471 471 LEU LEU A . n C 3 116 GLU 116 472 472 GLU GLU A . n C 3 117 SER 117 473 473 SER SER A . n C 3 118 GLN 118 474 474 GLN GLN A . n C 3 119 GLY 119 475 475 GLY GLY A . n C 3 120 ARG 120 476 476 ARG ARG A . n C 3 121 LYS 121 477 477 LYS LYS A . n C 3 122 ASP 122 478 478 ASP ASP A . n C 3 123 ILE 123 479 479 ILE ILE A . n C 3 124 LYS 124 480 480 LYS LYS A . n C 3 125 LEU 125 481 481 LEU LEU A . n C 3 126 ILE 126 482 482 ILE ILE A . n C 3 127 ASP 127 483 483 ASP ASP A . n C 3 128 ILE 128 484 484 ILE ILE A . n C 3 129 ALA 129 485 485 ALA ALA A . n C 3 130 LEU 130 486 486 LEU LEU A . n C 3 131 SER 131 487 487 SER SER A . n C 3 132 LYS 132 488 488 LYS LYS A . n C 3 133 THR 133 489 489 THR THR A . n C 3 134 ASP 134 490 490 ASP ASP A . n C 3 135 SER 135 491 491 SER SER A . n C 3 136 ARG 136 492 492 ARG ARG A . n C 3 137 LYS 137 493 493 LYS LYS A . n C 3 138 TYR 138 494 494 TYR TYR A . n C 3 139 GLU 139 495 495 GLU GLU A . n C 3 140 ASN 140 496 496 ASN ASN A . n C 3 141 ALA 141 497 497 ALA ALA A . n C 3 142 VAL 142 498 498 VAL VAL A . n C 3 143 TRP 143 499 499 TRP TRP A . n C 3 144 ASP 144 500 500 ASP ASP A . n C 3 145 GLN 145 501 501 GLN GLN A . n C 3 146 TYR 146 502 502 TYR TYR A . n C 3 147 LYS 147 503 503 LYS LYS A . n C 3 148 ASP 148 504 504 ASP ASP A . n C 3 149 LEU 149 505 505 LEU LEU A . n C 3 150 CYS 150 506 506 CYS CYS A . n C 3 151 HIS 151 507 507 HIS HIS A . n C 3 152 MET 152 508 508 MET MET A . n C 3 153 HIS 153 509 509 HIS HIS A . n C 3 154 THR 154 510 510 THR THR A . n C 3 155 GLY 155 511 511 GLY GLY A . n C 3 156 VAL 156 512 512 VAL VAL A . n C 3 157 VAL 157 513 513 VAL VAL A . n C 3 158 VAL 158 514 514 VAL VAL A . n C 3 159 GLU 159 515 515 GLU GLU A . n C 3 160 LYS 160 516 ? ? ? A . n C 3 161 LYS 161 517 ? ? ? A . n C 3 162 LYS 162 518 ? ? ? A . n C 3 163 ARG 163 519 ? ? ? A . n C 3 164 GLY 164 520 ? ? ? A . n C 3 165 GLY 165 521 ? ? ? A . n C 3 166 LYS 166 522 522 LYS LYS A . n C 3 167 GLU 167 523 523 GLU GLU A . n C 3 168 GLU 168 524 524 GLU GLU A . n C 3 169 ILE 169 525 525 ILE ILE A . n C 3 170 THR 170 526 526 THR THR A . n C 3 171 PRO 171 527 527 PRO PRO A . n C 3 172 HIS 172 528 528 HIS HIS A . n C 3 173 CYS 173 529 529 CYS CYS A . n C 3 174 ALA 174 530 530 ALA ALA A . n C 3 175 LEU 175 531 531 LEU LEU A . n C 3 176 MET 176 532 532 MET MET A . n C 3 177 ASP 177 533 533 ASP ASP A . n C 3 178 CYS 178 534 534 CYS CYS A . n C 3 179 ILE 179 535 535 ILE ILE A . n C 3 180 MET 180 536 536 MET MET A . n C 3 181 PHE 181 537 537 PHE PHE A . n C 3 182 ASP 182 538 538 ASP ASP A . n C 3 183 ALA 183 539 539 ALA ALA A . n C 3 184 ALA 184 540 540 ALA ALA A . n C 3 185 VAL 185 541 541 VAL VAL A . n C 3 186 SER 186 542 542 SER SER A . n C 3 187 GLY 187 543 543 GLY GLY A . n C 3 188 GLY 188 544 544 GLY GLY A . n C 3 189 LEU 189 545 545 LEU LEU A . n C 3 190 ASN 190 546 546 ASN ASN A . n C 3 191 THR 191 547 547 THR THR A . n C 3 192 SER 192 548 548 SER SER A . n C 3 193 VAL 193 549 549 VAL VAL A . n C 3 194 LEU 194 550 550 LEU LEU A . n C 3 195 ARG 195 551 551 ARG ARG A . n C 3 196 ALA 196 552 552 ALA ALA A . n C 3 197 VAL 197 553 553 VAL VAL A . n C 3 198 LEU 198 554 554 LEU LEU A . n C 3 199 PRO 199 555 555 PRO PRO A . n C 3 200 ARG 200 556 556 ARG ARG A . n C 3 201 ASP 201 557 557 ASP ASP A . n C 3 202 MET 202 558 558 MET MET A . n C 3 203 VAL 203 559 559 VAL VAL A . n C 3 204 PHE 204 560 560 PHE PHE A . n C 3 205 ARG 205 561 561 ARG ARG A . n C 3 206 THR 206 562 ? ? ? A . n C 3 207 SER 207 563 ? ? ? A . n C 3 208 THR 208 564 ? ? ? A . n C 3 209 PRO 209 565 565 PRO PRO A . n C 3 210 ARG 210 566 566 ARG ARG A . n C 3 211 VAL 211 567 567 VAL VAL A . n C 3 212 VAL 212 568 568 VAL VAL A . n C 3 213 LEU 213 569 569 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 101 101 MN MN E . E 4 MN 1 102 102 MN MN E . F 4 MN 1 103 103 MN MN E . G 5 ZN 1 601 601 ZN ZN A . H 6 HOH 1 101 101 HOH HOH F . I 6 HOH 1 701 102 HOH HOH A . I 6 HOH 2 702 701 HOH HOH A . I 6 HOH 3 703 702 HOH HOH A . I 6 HOH 4 704 703 HOH HOH A . I 6 HOH 5 705 704 HOH HOH A . I 6 HOH 6 706 705 HOH HOH A . I 6 HOH 7 707 706 HOH HOH A . I 6 HOH 8 708 707 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4GV9 _cell.length_a 44.780 _cell.length_b 44.780 _cell.length_c 221.740 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GV9 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4GV9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '18.5% PEG MME 5000, 0.1 M sodium citrate (pH4.5), and 2.4% PEG MME350, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2011-06-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphie _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9763 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4GV9 _reflns.observed_criterion_sigma_I 2.3 _reflns.observed_criterion_sigma_F 3 _reflns.d_resolution_low 73.90 _reflns.d_resolution_high 2.46 _reflns.number_obs 8461 _reflns.number_all ? _reflns.percent_possible_obs 98.43 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value 0.060 _reflns.pdbx_netI_over_sigmaI 2.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.46 _reflns_shell.d_res_low 2.6 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs 0.785 _reflns_shell.pdbx_Rsym_value 0.75 _reflns_shell.meanI_over_sigI_obs 5.6 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4GV9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8461 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.89 _refine.ls_d_res_high 2.46 _refine.ls_percent_reflns_obs 99.84 _refine.ls_R_factor_obs 0.26100 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.25896 _refine.ls_R_factor_R_free 0.30466 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 423 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.924 _refine.correlation_coeff_Fo_to_Fc_free 0.897 _refine.B_iso_mean 71.329 _refine.aniso_B[1][1] 32.71 _refine.aniso_B[2][2] 32.71 _refine.aniso_B[3][3] -65.42 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.074 _refine.overall_SU_ML 0.295 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 30.681 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1564 _refine_hist.pdbx_number_atoms_nucleic_acid 201 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1778 _refine_hist.d_res_high 2.46 _refine_hist.d_res_low 43.89 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.004 0.019 ? 1813 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.911 1.914 ? 2492 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.166 5.000 ? 195 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.099 24.366 ? 71 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.270 15.000 ? 287 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.591 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.062 0.200 ? 282 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.021 ? 1270 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 397 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 0.549 3.000 ? 1813 'X-RAY DIFFRACTION' ? r_sphericity_free 33.902 5.000 ? 8 'X-RAY DIFFRACTION' ? r_sphericity_bonded 17.431 5.000 ? 1770 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.46 _refine_ls_shell.d_res_low 2.529 _refine_ls_shell.number_reflns_R_work 598 _refine_ls_shell.R_factor_R_work 0.316 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.417 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 4GV9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4GV9 _struct.title 'Lassa nucleoprotein C-terminal domain in complex with triphosphated dsRNA soaking for 5 min' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GV9 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text ;DeDDH family enzyme, 3'-5' exonuclease, dsRNA, RNA BINDING PROTEIN-RNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP NCAP_LASSJ P13699 3 ;GLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP GLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKE EITPHCALMDCIMFDAAVSGGLNTSVLRAVLPRDMVFRTSTPRVVL ; 364 ? 2 PDB 4GV9 4GV9 1 GGGC ? ? 3 PDB 4GV9 4GV9 2 CGCCC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GV9 A 8 ? 213 ? P13699 364 ? 569 ? 364 569 2 2 4GV9 E 1 ? 4 ? 4GV9 8 ? 11 ? 8 11 3 3 4GV9 F 1 ? 5 ? 4GV9 1 ? 5 ? 1 5 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GV9 ALA A 1 ? UNP P13699 ? ? 'expression tag' 357 1 1 4GV9 MET A 2 ? UNP P13699 ? ? 'expression tag' 358 2 1 4GV9 ASP A 3 ? UNP P13699 ? ? 'expression tag' 359 3 1 4GV9 HIS A 4 ? UNP P13699 ? ? 'expression tag' 360 4 1 4GV9 VAL A 5 ? UNP P13699 ? ? 'expression tag' 361 5 1 4GV9 GLU A 6 ? UNP P13699 ? ? 'expression tag' 362 6 1 4GV9 PHE A 7 ? UNP P13699 ? ? 'expression tag' 363 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2740 ? 1 MORE -30 ? 1 'SSA (A^2)' 11210 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 10 ? MET C 21 ? THR A 366 MET A 377 1 ? 12 HELX_P HELX_P2 2 LEU C 22 ? LEU C 24 ? LEU A 378 LEU A 380 5 ? 3 HELX_P HELX_P3 3 ASP C 63 ? SER C 74 ? ASP A 419 SER A 430 1 ? 12 HELX_P HELX_P4 4 ASP C 78 ? PHE C 83 ? ASP A 434 PHE A 439 5 ? 6 HELX_P HELX_P5 5 GLY C 88 ? LEU C 97 ? GLY A 444 LEU A 453 1 ? 10 HELX_P HELX_P6 6 GLY C 107 ? GLN C 118 ? GLY A 463 GLN A 474 1 ? 12 HELX_P HELX_P7 7 SER C 131 ? ARG C 136 ? SER A 487 ARG A 492 1 ? 6 HELX_P HELX_P8 8 TYR C 138 ? LYS C 147 ? TYR A 494 LYS A 503 1 ? 10 HELX_P HELX_P9 9 ASP C 148 ? CYS C 150 ? ASP A 504 CYS A 506 5 ? 3 HELX_P HELX_P10 10 CYS C 173 ? GLY C 187 ? CYS A 529 GLY A 543 1 ? 15 HELX_P HELX_P11 11 PRO C 199 ? PHE C 204 ? PRO A 555 PHE A 560 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? E GTP 8 E G 9 1_555 ? ? ? ? ? ? ? 1.450 ? ? metalc1 metalc ? ? A G 3 "O3'" ? ? ? 1_555 D MN . MN ? ? E G 10 E MN 101 1_555 ? ? ? ? ? ? ? 2.549 ? ? metalc2 metalc ? ? A C 4 OP1 ? ? ? 1_555 D MN . MN ? ? E C 11 E MN 101 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc3 metalc ? ? A C 4 OP1 ? ? ? 1_555 F MN . MN ? ? E C 11 E MN 103 1_555 ? ? ? ? ? ? ? 1.717 ? ? metalc4 metalc ? ? D MN . MN ? ? ? 1_555 C ASP 33 OD1 ? ? E MN 101 A ASP 389 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc5 metalc ? ? F MN . MN ? ? ? 1_555 C ASP 33 OD2 ? ? E MN 103 A ASP 389 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc6 metalc ? ? F MN . MN ? ? ? 1_555 C GLU 35 OE2 ? ? E MN 103 A GLU 391 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc7 metalc ? ? F MN . MN ? ? ? 1_555 C ASP 177 OD2 ? ? E MN 103 A ASP 533 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc8 metalc ? ? C GLU 43 OE2 ? ? ? 1_555 G ZN . ZN ? ? A GLU 399 A ZN 601 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc9 metalc ? ? C CYS 150 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 506 A ZN 601 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc10 metalc ? ? C HIS 153 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 509 A ZN 601 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc11 metalc ? ? C CYS 173 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 529 A ZN 601 1_555 ? ? ? ? ? ? ? 2.073 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 B C 5 N3 ? ? E GTP 8 F C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 B C 5 O2 ? ? E GTP 8 F C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 B C 5 N4 ? ? E GTP 8 F C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 4 N3 ? ? E G 9 F C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 4 O2 ? ? E G 9 F C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 4 N4 ? ? E G 9 F C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 3 N3 ? ? E G 10 F C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 3 O2 ? ? E G 10 F C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 3 N4 ? ? E G 10 F C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 2 N1 ? ? E C 11 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 2 O6 ? ? E C 11 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 2 N2 ? ? E C 11 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A G 3 ? E G 10 ? 1_555 MN ? D MN . ? E MN 101 ? 1_555 OP1 ? A C 4 ? E C 11 ? 1_555 60.5 ? 2 "O3'" ? A G 3 ? E G 10 ? 1_555 MN ? D MN . ? E MN 101 ? 1_555 OD1 ? C ASP 33 ? A ASP 389 ? 1_555 153.4 ? 3 OP1 ? A C 4 ? E C 11 ? 1_555 MN ? D MN . ? E MN 101 ? 1_555 OD1 ? C ASP 33 ? A ASP 389 ? 1_555 94.4 ? 4 OP1 ? A C 4 ? E C 11 ? 1_555 MN ? F MN . ? E MN 103 ? 1_555 OD2 ? C ASP 33 ? A ASP 389 ? 1_555 100.6 ? 5 OP1 ? A C 4 ? E C 11 ? 1_555 MN ? F MN . ? E MN 103 ? 1_555 OE2 ? C GLU 35 ? A GLU 391 ? 1_555 125.0 ? 6 OD2 ? C ASP 33 ? A ASP 389 ? 1_555 MN ? F MN . ? E MN 103 ? 1_555 OE2 ? C GLU 35 ? A GLU 391 ? 1_555 87.3 ? 7 OP1 ? A C 4 ? E C 11 ? 1_555 MN ? F MN . ? E MN 103 ? 1_555 OD2 ? C ASP 177 ? A ASP 533 ? 1_555 128.8 ? 8 OD2 ? C ASP 33 ? A ASP 389 ? 1_555 MN ? F MN . ? E MN 103 ? 1_555 OD2 ? C ASP 177 ? A ASP 533 ? 1_555 78.5 ? 9 OE2 ? C GLU 35 ? A GLU 391 ? 1_555 MN ? F MN . ? E MN 103 ? 1_555 OD2 ? C ASP 177 ? A ASP 533 ? 1_555 106.2 ? 10 OE2 ? C GLU 43 ? A GLU 399 ? 1_555 ZN ? G ZN . ? A ZN 601 ? 1_555 SG ? C CYS 150 ? A CYS 506 ? 1_555 109.3 ? 11 OE2 ? C GLU 43 ? A GLU 399 ? 1_555 ZN ? G ZN . ? A ZN 601 ? 1_555 NE2 ? C HIS 153 ? A HIS 509 ? 1_555 106.2 ? 12 SG ? C CYS 150 ? A CYS 506 ? 1_555 ZN ? G ZN . ? A ZN 601 ? 1_555 NE2 ? C HIS 153 ? A HIS 509 ? 1_555 107.1 ? 13 OE2 ? C GLU 43 ? A GLU 399 ? 1_555 ZN ? G ZN . ? A ZN 601 ? 1_555 SG ? C CYS 173 ? A CYS 529 ? 1_555 110.4 ? 14 SG ? C CYS 150 ? A CYS 506 ? 1_555 ZN ? G ZN . ? A ZN 601 ? 1_555 SG ? C CYS 173 ? A CYS 529 ? 1_555 122.7 ? 15 NE2 ? C HIS 153 ? A HIS 509 ? 1_555 ZN ? G ZN . ? A ZN 601 ? 1_555 SG ? C CYS 173 ? A CYS 529 ? 1_555 99.5 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 210 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 566 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 VAL _struct_mon_prot_cis.pdbx_label_seq_id_2 211 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 VAL _struct_mon_prot_cis.pdbx_auth_seq_id_2 567 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -11.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP C 31 ? ARG C 37 ? TRP A 387 ARG A 393 A 2 ASP C 40 ? TYR C 47 ? ASP A 396 TYR A 403 A 3 CYS C 53 ? PHE C 58 ? CYS A 409 PHE A 414 A 4 ARG C 195 ? ALA C 196 ? ARG A 551 ALA A 552 B 1 VAL C 102 ? CYS C 105 ? VAL A 458 CYS A 461 B 2 LYS C 124 ? ASP C 127 ? LYS A 480 ASP A 483 C 1 VAL C 157 ? VAL C 158 ? VAL A 513 VAL A 514 C 2 GLU C 168 ? ILE C 169 ? GLU A 524 ILE A 525 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP C 31 ? N TRP A 387 O TYR C 47 ? O TYR A 403 A 2 3 N ILE C 44 ? N ILE A 400 O PHE C 57 ? O PHE A 413 A 3 4 N TYR C 54 ? N TYR A 410 O ARG C 195 ? O ARG A 551 B 1 2 N ILE C 103 ? N ILE A 459 O LYS C 124 ? O LYS A 480 C 1 2 N VAL C 157 ? N VAL A 513 O ILE C 169 ? O ILE A 525 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software E MN 101 ? 4 'BINDING SITE FOR RESIDUE MN E 101' AC2 Software E MN 102 ? 2 'BINDING SITE FOR RESIDUE MN E 102' AC3 Software E MN 103 ? 5 'BINDING SITE FOR RESIDUE MN E 103' AC4 Software A ZN 601 ? 4 'BINDING SITE FOR RESIDUE ZN A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP C 33 ? ASP A 389 . ? 1_555 ? 2 AC1 4 G A 3 ? G E 10 . ? 1_555 ? 3 AC1 4 C A 4 ? C E 11 . ? 1_555 ? 4 AC1 4 MN F . ? MN E 103 . ? 1_555 ? 5 AC2 2 G A 2 ? G E 9 . ? 1_555 ? 6 AC2 2 C B 1 ? C F 1 . ? 1_555 ? 7 AC3 5 ASP C 33 ? ASP A 389 . ? 1_555 ? 8 AC3 5 GLU C 35 ? GLU A 391 . ? 1_555 ? 9 AC3 5 ASP C 177 ? ASP A 533 . ? 1_555 ? 10 AC3 5 C A 4 ? C E 11 . ? 1_555 ? 11 AC3 5 MN D . ? MN E 101 . ? 1_555 ? 12 AC4 4 GLU C 43 ? GLU A 399 . ? 1_555 ? 13 AC4 4 CYS C 150 ? CYS A 506 . ? 1_555 ? 14 AC4 4 HIS C 153 ? HIS A 509 . ? 1_555 ? 15 AC4 4 CYS C 173 ? CYS A 529 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 E _pdbx_validate_rmsd_bond.auth_comp_id_1 GTP _pdbx_validate_rmsd_bond.auth_seq_id_1 8 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 E _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 9 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.450 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.157 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" E GTP 8 ? ? "O3'" E GTP 8 ? ? P E G 9 ? ? 106.56 119.70 -13.14 1.20 Y 2 1 "O3'" E GTP 8 ? ? P E G 9 ? ? OP2 E G 9 ? ? 120.08 110.50 9.58 1.10 Y 3 1 "C3'" E G 9 ? ? "O3'" E G 9 ? ? P E G 10 ? ? 135.00 119.70 15.30 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 430 ? ? -137.81 -85.03 2 1 ARG A 476 ? ? -107.88 63.34 3 1 VAL A 567 ? ? -149.96 -15.09 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id GTP _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id E _pdbx_struct_mod_residue.auth_comp_id GTP _pdbx_struct_mod_residue.auth_seq_id 8 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details "GUANOSINE-5'-TRIPHOSPHATE" # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 4.9610 -10.5342 0.7624 0.3943 0.5313 0.5852 0.0968 -0.0199 0.0396 20.8659 6.7816 1.4512 10.9356 -5.3958 -3.0645 -0.5245 0.5847 -0.0602 1.7055 0.1972 -0.0916 -0.4978 0.1893 -0.3756 'X-RAY DIFFRACTION' 2 ? refined 0.7510 -17.4742 -1.5076 0.5425 0.5782 0.4897 -0.0478 -0.0764 -0.1384 18.5915 34.1705 2.7537 3.3966 -3.3686 1.8582 -0.7805 -0.2125 0.9930 1.7009 -1.3041 -0.0266 0.8170 0.2216 -0.7690 'X-RAY DIFFRACTION' 3 ? refined 1.6253 -8.7070 18.5198 0.0496 0.0558 0.6592 0.0314 -0.0445 0.0058 0.8733 1.5050 1.8204 0.5426 -0.4303 -0.7465 0.0211 -0.0209 -0.0002 0.0324 0.0350 0.0063 -0.1896 0.1946 0.2750 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 E 8 E 11 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 F 1 F 5 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 363 A 569 ? . . . . ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 357 ? C ALA 1 2 1 Y 1 A MET 358 ? C MET 2 3 1 Y 1 A ASP 359 ? C ASP 3 4 1 Y 1 A HIS 360 ? C HIS 4 5 1 Y 1 A VAL 361 ? C VAL 5 6 1 Y 1 A GLU 362 ? C GLU 6 7 1 Y 1 A LYS 516 ? C LYS 160 8 1 Y 1 A LYS 517 ? C LYS 161 9 1 Y 1 A LYS 518 ? C LYS 162 10 1 Y 1 A ARG 519 ? C ARG 163 11 1 Y 1 A GLY 520 ? C GLY 164 12 1 Y 1 A GLY 521 ? C GLY 165 13 1 Y 1 A THR 562 ? C THR 206 14 1 Y 1 A SER 563 ? C SER 207 15 1 Y 1 A THR 564 ? C THR 208 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C OP3 O N N 74 C P P N N 75 C OP1 O N N 76 C OP2 O N N 77 C "O5'" O N N 78 C "C5'" C N N 79 C "C4'" C N R 80 C "O4'" O N N 81 C "C3'" C N S 82 C "O3'" O N N 83 C "C2'" C N R 84 C "O2'" O N N 85 C "C1'" C N R 86 C N1 N N N 87 C C2 C N N 88 C O2 O N N 89 C N3 N N N 90 C C4 C N N 91 C N4 N N N 92 C C5 C N N 93 C C6 C N N 94 C HOP3 H N N 95 C HOP2 H N N 96 C "H5'" H N N 97 C "H5''" H N N 98 C "H4'" H N N 99 C "H3'" H N N 100 C "HO3'" H N N 101 C "H2'" H N N 102 C "HO2'" H N N 103 C "H1'" H N N 104 C H41 H N N 105 C H42 H N N 106 C H5 H N N 107 C H6 H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 G OP3 O N N 123 G P P N N 124 G OP1 O N N 125 G OP2 O N N 126 G "O5'" O N N 127 G "C5'" C N N 128 G "C4'" C N R 129 G "O4'" O N N 130 G "C3'" C N S 131 G "O3'" O N N 132 G "C2'" C N R 133 G "O2'" O N N 134 G "C1'" C N R 135 G N9 N Y N 136 G C8 C Y N 137 G N7 N Y N 138 G C5 C Y N 139 G C6 C N N 140 G O6 O N N 141 G N1 N N N 142 G C2 C N N 143 G N2 N N N 144 G N3 N N N 145 G C4 C Y N 146 G HOP3 H N N 147 G HOP2 H N N 148 G "H5'" H N N 149 G "H5''" H N N 150 G "H4'" H N N 151 G "H3'" H N N 152 G "HO3'" H N N 153 G "H2'" H N N 154 G "HO2'" H N N 155 G "H1'" H N N 156 G H8 H N N 157 G H1 H N N 158 G H21 H N N 159 G H22 H N N 160 GLN N N N N 161 GLN CA C N S 162 GLN C C N N 163 GLN O O N N 164 GLN CB C N N 165 GLN CG C N N 166 GLN CD C N N 167 GLN OE1 O N N 168 GLN NE2 N N N 169 GLN OXT O N N 170 GLN H H N N 171 GLN H2 H N N 172 GLN HA H N N 173 GLN HB2 H N N 174 GLN HB3 H N N 175 GLN HG2 H N N 176 GLN HG3 H N N 177 GLN HE21 H N N 178 GLN HE22 H N N 179 GLN HXT H N N 180 GLU N N N N 181 GLU CA C N S 182 GLU C C N N 183 GLU O O N N 184 GLU CB C N N 185 GLU CG C N N 186 GLU CD C N N 187 GLU OE1 O N N 188 GLU OE2 O N N 189 GLU OXT O N N 190 GLU H H N N 191 GLU H2 H N N 192 GLU HA H N N 193 GLU HB2 H N N 194 GLU HB3 H N N 195 GLU HG2 H N N 196 GLU HG3 H N N 197 GLU HE2 H N N 198 GLU HXT H N N 199 GLY N N N N 200 GLY CA C N N 201 GLY C C N N 202 GLY O O N N 203 GLY OXT O N N 204 GLY H H N N 205 GLY H2 H N N 206 GLY HA2 H N N 207 GLY HA3 H N N 208 GLY HXT H N N 209 GTP PG P N N 210 GTP O1G O N N 211 GTP O2G O N N 212 GTP O3G O N N 213 GTP O3B O N N 214 GTP PB P N N 215 GTP O1B O N N 216 GTP O2B O N N 217 GTP O3A O N N 218 GTP PA P N N 219 GTP O1A O N N 220 GTP O2A O N N 221 GTP "O5'" O N N 222 GTP "C5'" C N N 223 GTP "C4'" C N R 224 GTP "O4'" O N N 225 GTP "C3'" C N S 226 GTP "O3'" O N N 227 GTP "C2'" C N R 228 GTP "O2'" O N N 229 GTP "C1'" C N R 230 GTP N9 N Y N 231 GTP C8 C Y N 232 GTP N7 N Y N 233 GTP C5 C Y N 234 GTP C6 C N N 235 GTP O6 O N N 236 GTP N1 N N N 237 GTP C2 C N N 238 GTP N2 N N N 239 GTP N3 N N N 240 GTP C4 C Y N 241 GTP HOG2 H N N 242 GTP HOG3 H N N 243 GTP HOB2 H N N 244 GTP HOA2 H N N 245 GTP "H5'" H N N 246 GTP "H5''" H N N 247 GTP "H4'" H N N 248 GTP "H3'" H N N 249 GTP "HO3'" H N N 250 GTP "H2'" H N N 251 GTP "HO2'" H N N 252 GTP "H1'" H N N 253 GTP H8 H N N 254 GTP HN1 H N N 255 GTP HN21 H N N 256 GTP HN22 H N N 257 HIS N N N N 258 HIS CA C N S 259 HIS C C N N 260 HIS O O N N 261 HIS CB C N N 262 HIS CG C Y N 263 HIS ND1 N Y N 264 HIS CD2 C Y N 265 HIS CE1 C Y N 266 HIS NE2 N Y N 267 HIS OXT O N N 268 HIS H H N N 269 HIS H2 H N N 270 HIS HA H N N 271 HIS HB2 H N N 272 HIS HB3 H N N 273 HIS HD1 H N N 274 HIS HD2 H N N 275 HIS HE1 H N N 276 HIS HE2 H N N 277 HIS HXT H N N 278 HOH O O N N 279 HOH H1 H N N 280 HOH H2 H N N 281 ILE N N N N 282 ILE CA C N S 283 ILE C C N N 284 ILE O O N N 285 ILE CB C N S 286 ILE CG1 C N N 287 ILE CG2 C N N 288 ILE CD1 C N N 289 ILE OXT O N N 290 ILE H H N N 291 ILE H2 H N N 292 ILE HA H N N 293 ILE HB H N N 294 ILE HG12 H N N 295 ILE HG13 H N N 296 ILE HG21 H N N 297 ILE HG22 H N N 298 ILE HG23 H N N 299 ILE HD11 H N N 300 ILE HD12 H N N 301 ILE HD13 H N N 302 ILE HXT H N N 303 LEU N N N N 304 LEU CA C N S 305 LEU C C N N 306 LEU O O N N 307 LEU CB C N N 308 LEU CG C N N 309 LEU CD1 C N N 310 LEU CD2 C N N 311 LEU OXT O N N 312 LEU H H N N 313 LEU H2 H N N 314 LEU HA H N N 315 LEU HB2 H N N 316 LEU HB3 H N N 317 LEU HG H N N 318 LEU HD11 H N N 319 LEU HD12 H N N 320 LEU HD13 H N N 321 LEU HD21 H N N 322 LEU HD22 H N N 323 LEU HD23 H N N 324 LEU HXT H N N 325 LYS N N N N 326 LYS CA C N S 327 LYS C C N N 328 LYS O O N N 329 LYS CB C N N 330 LYS CG C N N 331 LYS CD C N N 332 LYS CE C N N 333 LYS NZ N N N 334 LYS OXT O N N 335 LYS H H N N 336 LYS H2 H N N 337 LYS HA H N N 338 LYS HB2 H N N 339 LYS HB3 H N N 340 LYS HG2 H N N 341 LYS HG3 H N N 342 LYS HD2 H N N 343 LYS HD3 H N N 344 LYS HE2 H N N 345 LYS HE3 H N N 346 LYS HZ1 H N N 347 LYS HZ2 H N N 348 LYS HZ3 H N N 349 LYS HXT H N N 350 MET N N N N 351 MET CA C N S 352 MET C C N N 353 MET O O N N 354 MET CB C N N 355 MET CG C N N 356 MET SD S N N 357 MET CE C N N 358 MET OXT O N N 359 MET H H N N 360 MET H2 H N N 361 MET HA H N N 362 MET HB2 H N N 363 MET HB3 H N N 364 MET HG2 H N N 365 MET HG3 H N N 366 MET HE1 H N N 367 MET HE2 H N N 368 MET HE3 H N N 369 MET HXT H N N 370 MN MN MN N N 371 PHE N N N N 372 PHE CA C N S 373 PHE C C N N 374 PHE O O N N 375 PHE CB C N N 376 PHE CG C Y N 377 PHE CD1 C Y N 378 PHE CD2 C Y N 379 PHE CE1 C Y N 380 PHE CE2 C Y N 381 PHE CZ C Y N 382 PHE OXT O N N 383 PHE H H N N 384 PHE H2 H N N 385 PHE HA H N N 386 PHE HB2 H N N 387 PHE HB3 H N N 388 PHE HD1 H N N 389 PHE HD2 H N N 390 PHE HE1 H N N 391 PHE HE2 H N N 392 PHE HZ H N N 393 PHE HXT H N N 394 PRO N N N N 395 PRO CA C N S 396 PRO C C N N 397 PRO O O N N 398 PRO CB C N N 399 PRO CG C N N 400 PRO CD C N N 401 PRO OXT O N N 402 PRO H H N N 403 PRO HA H N N 404 PRO HB2 H N N 405 PRO HB3 H N N 406 PRO HG2 H N N 407 PRO HG3 H N N 408 PRO HD2 H N N 409 PRO HD3 H N N 410 PRO HXT H N N 411 SER N N N N 412 SER CA C N S 413 SER C C N N 414 SER O O N N 415 SER CB C N N 416 SER OG O N N 417 SER OXT O N N 418 SER H H N N 419 SER H2 H N N 420 SER HA H N N 421 SER HB2 H N N 422 SER HB3 H N N 423 SER HG H N N 424 SER HXT H N N 425 THR N N N N 426 THR CA C N S 427 THR C C N N 428 THR O O N N 429 THR CB C N R 430 THR OG1 O N N 431 THR CG2 C N N 432 THR OXT O N N 433 THR H H N N 434 THR H2 H N N 435 THR HA H N N 436 THR HB H N N 437 THR HG1 H N N 438 THR HG21 H N N 439 THR HG22 H N N 440 THR HG23 H N N 441 THR HXT H N N 442 TRP N N N N 443 TRP CA C N S 444 TRP C C N N 445 TRP O O N N 446 TRP CB C N N 447 TRP CG C Y N 448 TRP CD1 C Y N 449 TRP CD2 C Y N 450 TRP NE1 N Y N 451 TRP CE2 C Y N 452 TRP CE3 C Y N 453 TRP CZ2 C Y N 454 TRP CZ3 C Y N 455 TRP CH2 C Y N 456 TRP OXT O N N 457 TRP H H N N 458 TRP H2 H N N 459 TRP HA H N N 460 TRP HB2 H N N 461 TRP HB3 H N N 462 TRP HD1 H N N 463 TRP HE1 H N N 464 TRP HE3 H N N 465 TRP HZ2 H N N 466 TRP HZ3 H N N 467 TRP HH2 H N N 468 TRP HXT H N N 469 TYR N N N N 470 TYR CA C N S 471 TYR C C N N 472 TYR O O N N 473 TYR CB C N N 474 TYR CG C Y N 475 TYR CD1 C Y N 476 TYR CD2 C Y N 477 TYR CE1 C Y N 478 TYR CE2 C Y N 479 TYR CZ C Y N 480 TYR OH O N N 481 TYR OXT O N N 482 TYR H H N N 483 TYR H2 H N N 484 TYR HA H N N 485 TYR HB2 H N N 486 TYR HB3 H N N 487 TYR HD1 H N N 488 TYR HD2 H N N 489 TYR HE1 H N N 490 TYR HE2 H N N 491 TYR HH H N N 492 TYR HXT H N N 493 VAL N N N N 494 VAL CA C N S 495 VAL C C N N 496 VAL O O N N 497 VAL CB C N N 498 VAL CG1 C N N 499 VAL CG2 C N N 500 VAL OXT O N N 501 VAL H H N N 502 VAL H2 H N N 503 VAL HA H N N 504 VAL HB H N N 505 VAL HG11 H N N 506 VAL HG12 H N N 507 VAL HG13 H N N 508 VAL HG21 H N N 509 VAL HG22 H N N 510 VAL HG23 H N N 511 VAL HXT H N N 512 ZN ZN ZN N N 513 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C OP3 P sing N N 70 C OP3 HOP3 sing N N 71 C P OP1 doub N N 72 C P OP2 sing N N 73 C P "O5'" sing N N 74 C OP2 HOP2 sing N N 75 C "O5'" "C5'" sing N N 76 C "C5'" "C4'" sing N N 77 C "C5'" "H5'" sing N N 78 C "C5'" "H5''" sing N N 79 C "C4'" "O4'" sing N N 80 C "C4'" "C3'" sing N N 81 C "C4'" "H4'" sing N N 82 C "O4'" "C1'" sing N N 83 C "C3'" "O3'" sing N N 84 C "C3'" "C2'" sing N N 85 C "C3'" "H3'" sing N N 86 C "O3'" "HO3'" sing N N 87 C "C2'" "O2'" sing N N 88 C "C2'" "C1'" sing N N 89 C "C2'" "H2'" sing N N 90 C "O2'" "HO2'" sing N N 91 C "C1'" N1 sing N N 92 C "C1'" "H1'" sing N N 93 C N1 C2 sing N N 94 C N1 C6 sing N N 95 C C2 O2 doub N N 96 C C2 N3 sing N N 97 C N3 C4 doub N N 98 C C4 N4 sing N N 99 C C4 C5 sing N N 100 C N4 H41 sing N N 101 C N4 H42 sing N N 102 C C5 C6 doub N N 103 C C5 H5 sing N N 104 C C6 H6 sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 G OP3 P sing N N 119 G OP3 HOP3 sing N N 120 G P OP1 doub N N 121 G P OP2 sing N N 122 G P "O5'" sing N N 123 G OP2 HOP2 sing N N 124 G "O5'" "C5'" sing N N 125 G "C5'" "C4'" sing N N 126 G "C5'" "H5'" sing N N 127 G "C5'" "H5''" sing N N 128 G "C4'" "O4'" sing N N 129 G "C4'" "C3'" sing N N 130 G "C4'" "H4'" sing N N 131 G "O4'" "C1'" sing N N 132 G "C3'" "O3'" sing N N 133 G "C3'" "C2'" sing N N 134 G "C3'" "H3'" sing N N 135 G "O3'" "HO3'" sing N N 136 G "C2'" "O2'" sing N N 137 G "C2'" "C1'" sing N N 138 G "C2'" "H2'" sing N N 139 G "O2'" "HO2'" sing N N 140 G "C1'" N9 sing N N 141 G "C1'" "H1'" sing N N 142 G N9 C8 sing Y N 143 G N9 C4 sing Y N 144 G C8 N7 doub Y N 145 G C8 H8 sing N N 146 G N7 C5 sing Y N 147 G C5 C6 sing N N 148 G C5 C4 doub Y N 149 G C6 O6 doub N N 150 G C6 N1 sing N N 151 G N1 C2 sing N N 152 G N1 H1 sing N N 153 G C2 N2 sing N N 154 G C2 N3 doub N N 155 G N2 H21 sing N N 156 G N2 H22 sing N N 157 G N3 C4 sing N N 158 GLN N CA sing N N 159 GLN N H sing N N 160 GLN N H2 sing N N 161 GLN CA C sing N N 162 GLN CA CB sing N N 163 GLN CA HA sing N N 164 GLN C O doub N N 165 GLN C OXT sing N N 166 GLN CB CG sing N N 167 GLN CB HB2 sing N N 168 GLN CB HB3 sing N N 169 GLN CG CD sing N N 170 GLN CG HG2 sing N N 171 GLN CG HG3 sing N N 172 GLN CD OE1 doub N N 173 GLN CD NE2 sing N N 174 GLN NE2 HE21 sing N N 175 GLN NE2 HE22 sing N N 176 GLN OXT HXT sing N N 177 GLU N CA sing N N 178 GLU N H sing N N 179 GLU N H2 sing N N 180 GLU CA C sing N N 181 GLU CA CB sing N N 182 GLU CA HA sing N N 183 GLU C O doub N N 184 GLU C OXT sing N N 185 GLU CB CG sing N N 186 GLU CB HB2 sing N N 187 GLU CB HB3 sing N N 188 GLU CG CD sing N N 189 GLU CG HG2 sing N N 190 GLU CG HG3 sing N N 191 GLU CD OE1 doub N N 192 GLU CD OE2 sing N N 193 GLU OE2 HE2 sing N N 194 GLU OXT HXT sing N N 195 GLY N CA sing N N 196 GLY N H sing N N 197 GLY N H2 sing N N 198 GLY CA C sing N N 199 GLY CA HA2 sing N N 200 GLY CA HA3 sing N N 201 GLY C O doub N N 202 GLY C OXT sing N N 203 GLY OXT HXT sing N N 204 GTP PG O1G doub N N 205 GTP PG O2G sing N N 206 GTP PG O3G sing N N 207 GTP PG O3B sing N N 208 GTP O2G HOG2 sing N N 209 GTP O3G HOG3 sing N N 210 GTP O3B PB sing N N 211 GTP PB O1B doub N N 212 GTP PB O2B sing N N 213 GTP PB O3A sing N N 214 GTP O2B HOB2 sing N N 215 GTP O3A PA sing N N 216 GTP PA O1A doub N N 217 GTP PA O2A sing N N 218 GTP PA "O5'" sing N N 219 GTP O2A HOA2 sing N N 220 GTP "O5'" "C5'" sing N N 221 GTP "C5'" "C4'" sing N N 222 GTP "C5'" "H5'" sing N N 223 GTP "C5'" "H5''" sing N N 224 GTP "C4'" "O4'" sing N N 225 GTP "C4'" "C3'" sing N N 226 GTP "C4'" "H4'" sing N N 227 GTP "O4'" "C1'" sing N N 228 GTP "C3'" "O3'" sing N N 229 GTP "C3'" "C2'" sing N N 230 GTP "C3'" "H3'" sing N N 231 GTP "O3'" "HO3'" sing N N 232 GTP "C2'" "O2'" sing N N 233 GTP "C2'" "C1'" sing N N 234 GTP "C2'" "H2'" sing N N 235 GTP "O2'" "HO2'" sing N N 236 GTP "C1'" N9 sing N N 237 GTP "C1'" "H1'" sing N N 238 GTP N9 C8 sing Y N 239 GTP N9 C4 sing Y N 240 GTP C8 N7 doub Y N 241 GTP C8 H8 sing N N 242 GTP N7 C5 sing Y N 243 GTP C5 C6 sing N N 244 GTP C5 C4 doub Y N 245 GTP C6 O6 doub N N 246 GTP C6 N1 sing N N 247 GTP N1 C2 sing N N 248 GTP N1 HN1 sing N N 249 GTP C2 N2 sing N N 250 GTP C2 N3 doub N N 251 GTP N2 HN21 sing N N 252 GTP N2 HN22 sing N N 253 GTP N3 C4 sing N N 254 HIS N CA sing N N 255 HIS N H sing N N 256 HIS N H2 sing N N 257 HIS CA C sing N N 258 HIS CA CB sing N N 259 HIS CA HA sing N N 260 HIS C O doub N N 261 HIS C OXT sing N N 262 HIS CB CG sing N N 263 HIS CB HB2 sing N N 264 HIS CB HB3 sing N N 265 HIS CG ND1 sing Y N 266 HIS CG CD2 doub Y N 267 HIS ND1 CE1 doub Y N 268 HIS ND1 HD1 sing N N 269 HIS CD2 NE2 sing Y N 270 HIS CD2 HD2 sing N N 271 HIS CE1 NE2 sing Y N 272 HIS CE1 HE1 sing N N 273 HIS NE2 HE2 sing N N 274 HIS OXT HXT sing N N 275 HOH O H1 sing N N 276 HOH O H2 sing N N 277 ILE N CA sing N N 278 ILE N H sing N N 279 ILE N H2 sing N N 280 ILE CA C sing N N 281 ILE CA CB sing N N 282 ILE CA HA sing N N 283 ILE C O doub N N 284 ILE C OXT sing N N 285 ILE CB CG1 sing N N 286 ILE CB CG2 sing N N 287 ILE CB HB sing N N 288 ILE CG1 CD1 sing N N 289 ILE CG1 HG12 sing N N 290 ILE CG1 HG13 sing N N 291 ILE CG2 HG21 sing N N 292 ILE CG2 HG22 sing N N 293 ILE CG2 HG23 sing N N 294 ILE CD1 HD11 sing N N 295 ILE CD1 HD12 sing N N 296 ILE CD1 HD13 sing N N 297 ILE OXT HXT sing N N 298 LEU N CA sing N N 299 LEU N H sing N N 300 LEU N H2 sing N N 301 LEU CA C sing N N 302 LEU CA CB sing N N 303 LEU CA HA sing N N 304 LEU C O doub N N 305 LEU C OXT sing N N 306 LEU CB CG sing N N 307 LEU CB HB2 sing N N 308 LEU CB HB3 sing N N 309 LEU CG CD1 sing N N 310 LEU CG CD2 sing N N 311 LEU CG HG sing N N 312 LEU CD1 HD11 sing N N 313 LEU CD1 HD12 sing N N 314 LEU CD1 HD13 sing N N 315 LEU CD2 HD21 sing N N 316 LEU CD2 HD22 sing N N 317 LEU CD2 HD23 sing N N 318 LEU OXT HXT sing N N 319 LYS N CA sing N N 320 LYS N H sing N N 321 LYS N H2 sing N N 322 LYS CA C sing N N 323 LYS CA CB sing N N 324 LYS CA HA sing N N 325 LYS C O doub N N 326 LYS C OXT sing N N 327 LYS CB CG sing N N 328 LYS CB HB2 sing N N 329 LYS CB HB3 sing N N 330 LYS CG CD sing N N 331 LYS CG HG2 sing N N 332 LYS CG HG3 sing N N 333 LYS CD CE sing N N 334 LYS CD HD2 sing N N 335 LYS CD HD3 sing N N 336 LYS CE NZ sing N N 337 LYS CE HE2 sing N N 338 LYS CE HE3 sing N N 339 LYS NZ HZ1 sing N N 340 LYS NZ HZ2 sing N N 341 LYS NZ HZ3 sing N N 342 LYS OXT HXT sing N N 343 MET N CA sing N N 344 MET N H sing N N 345 MET N H2 sing N N 346 MET CA C sing N N 347 MET CA CB sing N N 348 MET CA HA sing N N 349 MET C O doub N N 350 MET C OXT sing N N 351 MET CB CG sing N N 352 MET CB HB2 sing N N 353 MET CB HB3 sing N N 354 MET CG SD sing N N 355 MET CG HG2 sing N N 356 MET CG HG3 sing N N 357 MET SD CE sing N N 358 MET CE HE1 sing N N 359 MET CE HE2 sing N N 360 MET CE HE3 sing N N 361 MET OXT HXT sing N N 362 PHE N CA sing N N 363 PHE N H sing N N 364 PHE N H2 sing N N 365 PHE CA C sing N N 366 PHE CA CB sing N N 367 PHE CA HA sing N N 368 PHE C O doub N N 369 PHE C OXT sing N N 370 PHE CB CG sing N N 371 PHE CB HB2 sing N N 372 PHE CB HB3 sing N N 373 PHE CG CD1 doub Y N 374 PHE CG CD2 sing Y N 375 PHE CD1 CE1 sing Y N 376 PHE CD1 HD1 sing N N 377 PHE CD2 CE2 doub Y N 378 PHE CD2 HD2 sing N N 379 PHE CE1 CZ doub Y N 380 PHE CE1 HE1 sing N N 381 PHE CE2 CZ sing Y N 382 PHE CE2 HE2 sing N N 383 PHE CZ HZ sing N N 384 PHE OXT HXT sing N N 385 PRO N CA sing N N 386 PRO N CD sing N N 387 PRO N H sing N N 388 PRO CA C sing N N 389 PRO CA CB sing N N 390 PRO CA HA sing N N 391 PRO C O doub N N 392 PRO C OXT sing N N 393 PRO CB CG sing N N 394 PRO CB HB2 sing N N 395 PRO CB HB3 sing N N 396 PRO CG CD sing N N 397 PRO CG HG2 sing N N 398 PRO CG HG3 sing N N 399 PRO CD HD2 sing N N 400 PRO CD HD3 sing N N 401 PRO OXT HXT sing N N 402 SER N CA sing N N 403 SER N H sing N N 404 SER N H2 sing N N 405 SER CA C sing N N 406 SER CA CB sing N N 407 SER CA HA sing N N 408 SER C O doub N N 409 SER C OXT sing N N 410 SER CB OG sing N N 411 SER CB HB2 sing N N 412 SER CB HB3 sing N N 413 SER OG HG sing N N 414 SER OXT HXT sing N N 415 THR N CA sing N N 416 THR N H sing N N 417 THR N H2 sing N N 418 THR CA C sing N N 419 THR CA CB sing N N 420 THR CA HA sing N N 421 THR C O doub N N 422 THR C OXT sing N N 423 THR CB OG1 sing N N 424 THR CB CG2 sing N N 425 THR CB HB sing N N 426 THR OG1 HG1 sing N N 427 THR CG2 HG21 sing N N 428 THR CG2 HG22 sing N N 429 THR CG2 HG23 sing N N 430 THR OXT HXT sing N N 431 TRP N CA sing N N 432 TRP N H sing N N 433 TRP N H2 sing N N 434 TRP CA C sing N N 435 TRP CA CB sing N N 436 TRP CA HA sing N N 437 TRP C O doub N N 438 TRP C OXT sing N N 439 TRP CB CG sing N N 440 TRP CB HB2 sing N N 441 TRP CB HB3 sing N N 442 TRP CG CD1 doub Y N 443 TRP CG CD2 sing Y N 444 TRP CD1 NE1 sing Y N 445 TRP CD1 HD1 sing N N 446 TRP CD2 CE2 doub Y N 447 TRP CD2 CE3 sing Y N 448 TRP NE1 CE2 sing Y N 449 TRP NE1 HE1 sing N N 450 TRP CE2 CZ2 sing Y N 451 TRP CE3 CZ3 doub Y N 452 TRP CE3 HE3 sing N N 453 TRP CZ2 CH2 doub Y N 454 TRP CZ2 HZ2 sing N N 455 TRP CZ3 CH2 sing Y N 456 TRP CZ3 HZ3 sing N N 457 TRP CH2 HH2 sing N N 458 TRP OXT HXT sing N N 459 TYR N CA sing N N 460 TYR N H sing N N 461 TYR N H2 sing N N 462 TYR CA C sing N N 463 TYR CA CB sing N N 464 TYR CA HA sing N N 465 TYR C O doub N N 466 TYR C OXT sing N N 467 TYR CB CG sing N N 468 TYR CB HB2 sing N N 469 TYR CB HB3 sing N N 470 TYR CG CD1 doub Y N 471 TYR CG CD2 sing Y N 472 TYR CD1 CE1 sing Y N 473 TYR CD1 HD1 sing N N 474 TYR CD2 CE2 doub Y N 475 TYR CD2 HD2 sing N N 476 TYR CE1 CZ doub Y N 477 TYR CE1 HE1 sing N N 478 TYR CE2 CZ sing Y N 479 TYR CE2 HE2 sing N N 480 TYR CZ OH sing N N 481 TYR OH HH sing N N 482 TYR OXT HXT sing N N 483 VAL N CA sing N N 484 VAL N H sing N N 485 VAL N H2 sing N N 486 VAL CA C sing N N 487 VAL CA CB sing N N 488 VAL CA HA sing N N 489 VAL C O doub N N 490 VAL C OXT sing N N 491 VAL CB CG1 sing N N 492 VAL CB CG2 sing N N 493 VAL CB HB sing N N 494 VAL CG1 HG11 sing N N 495 VAL CG1 HG12 sing N N 496 VAL CG1 HG13 sing N N 497 VAL CG2 HG21 sing N N 498 VAL CG2 HG22 sing N N 499 VAL CG2 HG23 sing N N 500 VAL OXT HXT sing N N 501 # _ndb_struct_conf_na.entry_id 4GV9 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 B C 5 1_555 -0.288 -0.072 -0.137 -7.783 -6.760 1.682 1 E_GTP8:C5_F E 8 ? F 5 ? 19 1 1 A G 2 1_555 B C 4 1_555 -0.699 -0.174 0.255 3.145 -20.231 7.945 2 E_G9:C4_F E 9 ? F 4 ? 19 1 1 A G 3 1_555 B C 3 1_555 -0.420 -0.140 0.009 -10.329 -16.970 2.726 3 E_G10:C3_F E 10 ? F 3 ? 19 1 1 A C 4 1_555 B G 2 1_555 0.886 0.023 0.238 -1.997 -5.665 -3.423 4 E_C11:G2_F E 11 ? F 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 B C 5 1_555 A G 2 1_555 B C 4 1_555 0.814 -0.923 3.155 -0.664 1.554 35.506 -1.728 -1.427 3.098 2.547 1.088 35.545 1 EE_GTP8G9:C4C5_FF E 8 ? F 5 ? E 9 ? F 4 ? 1 A G 2 1_555 B C 4 1_555 A G 3 1_555 B C 3 1_555 -0.419 -1.500 3.456 0.225 9.194 38.293 -3.326 0.649 3.028 13.774 -0.338 39.342 2 EE_G9G10:C3C4_FF E 9 ? F 4 ? E 10 ? F 3 ? 1 A G 3 1_555 B C 3 1_555 A C 4 1_555 B G 2 1_555 -0.081 -1.271 3.145 -0.014 1.209 37.679 -2.116 0.124 3.105 1.872 0.021 37.697 3 EE_G10C11:G2C3_FF E 10 ? F 3 ? E 11 ? F 2 ? # _atom_sites.entry_id 4GV9 _atom_sites.fract_transf_matrix[1][1] 0.022331 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022331 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004510 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S ZN # loop_