data_4IY2 # _entry.id 4IY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IY2 RCSB RCSB077353 WWPDB D_1000077353 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4IY0 . unspecified PDB 4IY3 . unspecified PDB 4IY4 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4IY2 _pdbx_database_status.recvd_initial_deposition_date 2013-01-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Corral-Rodriguez, M.A.' 1 'Stuiver, M.' 2 'Encinar, J.A.' 3 'Spiwok, V.' 4 'Gomez-Garcia, I.' 5 'Oyenarte, I.' 6 'Ereno-Orbea, J.' 7 'Terashima, H.' 8 'Accardi, A.' 9 'Diercks, T.' 10 'Muller, D.' 11 'Martinez-Cruz, L.A.' 12 # _citation.id primary _citation.title 'Structural and ligand binding properties of the Bateman domain of human magnesium transporters CNNM2 and CNNM4' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Corral-Rodriguez, M.A.' 1 primary 'Stuiver, M.' 2 primary 'Encinar, J.A.' 3 primary 'Spiwok, V.' 4 primary 'Gomez-Garcia, I.' 5 primary 'Oyenarte, I.' 6 primary 'Ereno-Orbea, J.' 7 primary 'Terashima, H.' 8 primary 'Accardi, A.' 9 primary 'Diercks, T.' 10 primary 'Muller, D.' 11 primary 'Martinez-Cruz, L.A.' 12 # _cell.entry_id 4IY2 _cell.length_a 102.513 _cell.length_b 104.593 _cell.length_c 105.694 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IY2 _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Metal transporter CNNM2' _entity.formula_weight 18147.752 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CBS domain, UNP residues 430-584' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ancient conserved domain-containing protein 2, Cyclin-M2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)EELNIIQGALELRTKTVEDV(MSE)TPLRDCF(MSE)ITGEAILDFNT(MSE)SEI(MSE)ESGYTRIPVFEGER SNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDA(MSE)LEEFKKGKSHLAIVQRVNNEGEGDPFYEVL GIVTLEDVIEEIIKSEILDE ; _entity_poly.pdbx_seq_one_letter_code_can ;MEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDC TPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDE ; _entity_poly.pdbx_strand_id A,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLU n 1 3 GLU n 1 4 LEU n 1 5 ASN n 1 6 ILE n 1 7 ILE n 1 8 GLN n 1 9 GLY n 1 10 ALA n 1 11 LEU n 1 12 GLU n 1 13 LEU n 1 14 ARG n 1 15 THR n 1 16 LYS n 1 17 THR n 1 18 VAL n 1 19 GLU n 1 20 ASP n 1 21 VAL n 1 22 MSE n 1 23 THR n 1 24 PRO n 1 25 LEU n 1 26 ARG n 1 27 ASP n 1 28 CYS n 1 29 PHE n 1 30 MSE n 1 31 ILE n 1 32 THR n 1 33 GLY n 1 34 GLU n 1 35 ALA n 1 36 ILE n 1 37 LEU n 1 38 ASP n 1 39 PHE n 1 40 ASN n 1 41 THR n 1 42 MSE n 1 43 SER n 1 44 GLU n 1 45 ILE n 1 46 MSE n 1 47 GLU n 1 48 SER n 1 49 GLY n 1 50 TYR n 1 51 THR n 1 52 ARG n 1 53 ILE n 1 54 PRO n 1 55 VAL n 1 56 PHE n 1 57 GLU n 1 58 GLY n 1 59 GLU n 1 60 ARG n 1 61 SER n 1 62 ASN n 1 63 ILE n 1 64 VAL n 1 65 ASP n 1 66 LEU n 1 67 LEU n 1 68 PHE n 1 69 VAL n 1 70 LYS n 1 71 ASP n 1 72 LEU n 1 73 ALA n 1 74 PHE n 1 75 VAL n 1 76 ASP n 1 77 PRO n 1 78 ASP n 1 79 ASP n 1 80 CYS n 1 81 THR n 1 82 PRO n 1 83 LEU n 1 84 LYS n 1 85 THR n 1 86 ILE n 1 87 THR n 1 88 LYS n 1 89 PHE n 1 90 TYR n 1 91 ASN n 1 92 HIS n 1 93 PRO n 1 94 LEU n 1 95 HIS n 1 96 PHE n 1 97 VAL n 1 98 PHE n 1 99 ASN n 1 100 ASP n 1 101 THR n 1 102 LYS n 1 103 LEU n 1 104 ASP n 1 105 ALA n 1 106 MSE n 1 107 LEU n 1 108 GLU n 1 109 GLU n 1 110 PHE n 1 111 LYS n 1 112 LYS n 1 113 GLY n 1 114 LYS n 1 115 SER n 1 116 HIS n 1 117 LEU n 1 118 ALA n 1 119 ILE n 1 120 VAL n 1 121 GLN n 1 122 ARG n 1 123 VAL n 1 124 ASN n 1 125 ASN n 1 126 GLU n 1 127 GLY n 1 128 GLU n 1 129 GLY n 1 130 ASP n 1 131 PRO n 1 132 PHE n 1 133 TYR n 1 134 GLU n 1 135 VAL n 1 136 LEU n 1 137 GLY n 1 138 ILE n 1 139 VAL n 1 140 THR n 1 141 LEU n 1 142 GLU n 1 143 ASP n 1 144 VAL n 1 145 ILE n 1 146 GLU n 1 147 GLU n 1 148 ILE n 1 149 ILE n 1 150 LYS n 1 151 SER n 1 152 GLU n 1 153 ILE n 1 154 LEU n 1 155 ASP n 1 156 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CNNM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET101D/TOPO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CNNM2_HUMAN _struct_ref.pdbx_db_accession Q9H8M5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCT PLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDE ; _struct_ref.pdbx_align_begin 430 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IY2 A 2 ? 156 ? Q9H8M5 430 ? 584 ? 430 584 2 1 4IY2 C 2 ? 156 ? Q9H8M5 430 ? 584 ? 430 584 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4IY2 MSE A 1 ? UNP Q9H8M5 ? ? 'EXPRESSION TAG' 429 1 2 4IY2 MSE C 1 ? UNP Q9H8M5 ? ? 'EXPRESSION TAG' 429 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4IY2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.90 _exptl_crystal.density_percent_sol 68.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '250mM calcium acetate, 100mM imidazole , pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Silicon (1 1 1) channel-cut' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 4IY2 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 74.34 _reflns.d_resolution_high 3.60 _reflns.number_obs 6355 _reflns.number_all 6711 _reflns.percent_possible_obs 97.36 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.602 _reflns_shell.d_res_low 3.695 _reflns_shell.percent_possible_all 70.00 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4IY2 _refine.ls_number_reflns_obs 6355 _refine.ls_number_reflns_all 6711 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.0 _refine.ls_d_res_high 3.60 _refine.ls_percent_reflns_obs 97.36 _refine.ls_R_factor_obs 0.29353 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.29322 _refine.ls_R_factor_R_free 0.29983 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 316 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.872 _refine.correlation_coeff_Fo_to_Fc_free 0.888 _refine.B_iso_mean 118.464 _refine.aniso_B[1][1] -5.20 _refine.aniso_B[2][2] 1.52 _refine.aniso_B[3][3] 3.67 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.684 _refine.overall_SU_ML 0.613 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 40.440 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2426 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2426 _refine_hist.d_res_high 3.60 _refine_hist.d_res_low 37.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.022 ? 2468 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 0.922 1.979 ? 3338 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.262 5.000 ? 302 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34.941 25.593 ? 118 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.112 15.000 ? 454 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18.076 15.000 ? 10 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.061 0.200 ? 390 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.003 0.021 ? 1834 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 9.388 1.500 ? 1514 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 13.196 2.000 ? 2472 ? 'X-RAY DIFFRACTION' r_scbond_it 3.769 3.000 ? 954 ? 'X-RAY DIFFRACTION' r_scangle_it 5.877 4.500 ? 866 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.602 _refine_ls_shell.d_res_low 3.695 _refine_ls_shell.number_reflns_R_work 333 _refine_ls_shell.R_factor_R_work 0.407 _refine_ls_shell.percent_reflns_obs 70.00 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 10 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4IY2 _struct.title 'Structural and ligand binding properties of the Bateman domain of human magnesium transporters CNNM2 and CNNM4' _struct.pdbx_descriptor 'Metal transporter CNNM2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IY2 _struct_keywords.pdbx_keywords 'METAL TRANSPORT' _struct_keywords.text 'CBS domain, CNNM2, Magnesium transporter, cytosol, METAL TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 1 ? LEU A 13 ? MSE A 429 LEU A 441 1 ? 13 HELX_P HELX_P2 2 THR A 17 ? MSE A 22 ? THR A 445 MSE A 450 1 ? 6 HELX_P HELX_P3 3 ARG A 26 ? CYS A 28 ? ARG A 454 CYS A 456 5 ? 3 HELX_P HELX_P4 4 ASP A 38 ? GLY A 49 ? ASP A 466 GLY A 477 1 ? 12 HELX_P HELX_P5 5 LYS A 70 ? ALA A 73 ? LYS A 498 ALA A 501 5 ? 4 HELX_P HELX_P6 6 ASP A 76 ? CYS A 80 ? ASP A 504 CYS A 508 5 ? 5 HELX_P HELX_P7 7 LEU A 83 ? ASN A 91 ? LEU A 511 ASN A 519 1 ? 9 HELX_P HELX_P8 8 LYS A 102 ? LYS A 112 ? LYS A 530 LYS A 540 1 ? 11 HELX_P HELX_P9 9 LEU A 141 ? LYS A 150 ? LEU A 569 LYS A 578 1 ? 10 HELX_P HELX_P10 10 GLU B 2 ? LEU B 13 ? GLU C 430 LEU C 441 1 ? 12 HELX_P HELX_P11 11 THR B 17 ? VAL B 21 ? THR C 445 VAL C 449 5 ? 5 HELX_P HELX_P12 12 ASP B 38 ? GLY B 49 ? ASP C 466 GLY C 477 1 ? 12 HELX_P HELX_P13 13 LYS B 70 ? ALA B 73 ? LYS C 498 ALA C 501 5 ? 4 HELX_P HELX_P14 14 ASP B 76 ? CYS B 80 ? ASP C 504 CYS C 508 5 ? 5 HELX_P HELX_P15 15 LEU B 83 ? ASN B 91 ? LEU C 511 ASN C 519 1 ? 9 HELX_P HELX_P16 16 LYS B 102 ? LYS B 112 ? LYS C 530 LYS C 540 1 ? 11 HELX_P HELX_P17 17 LEU B 141 ? LYS B 150 ? LEU C 569 LYS C 578 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A GLU 2 N ? ? A MSE 429 A GLU 430 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A VAL 21 C ? ? ? 1_555 A MSE 22 N ? ? A VAL 449 A MSE 450 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A MSE 22 C ? ? ? 1_555 A THR 23 N ? ? A MSE 450 A THR 451 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A PHE 29 C ? ? ? 1_555 A MSE 30 N ? ? A PHE 457 A MSE 458 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A MSE 30 C ? ? ? 1_555 A ILE 31 N ? ? A MSE 458 A ILE 459 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A THR 41 C ? ? ? 1_555 A MSE 42 N ? ? A THR 469 A MSE 470 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A MSE 42 C ? ? ? 1_555 A SER 43 N ? ? A MSE 470 A SER 471 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? A ILE 45 C ? ? ? 1_555 A MSE 46 N ? ? A ILE 473 A MSE 474 1_555 ? ? ? ? ? ? ? 1.334 ? covale9 covale ? ? A MSE 46 C ? ? ? 1_555 A GLU 47 N ? ? A MSE 474 A GLU 475 1_555 ? ? ? ? ? ? ? 1.338 ? covale10 covale ? ? A ALA 105 C ? ? ? 1_555 A MSE 106 N ? ? A ALA 533 A MSE 534 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale ? ? A MSE 106 C ? ? ? 1_555 A LEU 107 N ? ? A MSE 534 A LEU 535 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? B MSE 1 C ? ? ? 1_555 B GLU 2 N ? ? C MSE 429 C GLU 430 1_555 ? ? ? ? ? ? ? 1.333 ? covale13 covale ? ? B VAL 21 C ? ? ? 1_555 B MSE 22 N ? ? C VAL 449 C MSE 450 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale ? ? B MSE 22 C ? ? ? 1_555 B THR 23 N ? ? C MSE 450 C THR 451 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? B PHE 29 C ? ? ? 1_555 B MSE 30 N ? ? C PHE 457 C MSE 458 1_555 ? ? ? ? ? ? ? 1.325 ? covale16 covale ? ? B MSE 30 C ? ? ? 1_555 B ILE 31 N ? ? C MSE 458 C ILE 459 1_555 ? ? ? ? ? ? ? 1.328 ? covale17 covale ? ? B THR 41 C ? ? ? 1_555 B MSE 42 N ? ? C THR 469 C MSE 470 1_555 ? ? ? ? ? ? ? 1.333 ? covale18 covale ? ? B MSE 42 C ? ? ? 1_555 B SER 43 N ? ? C MSE 470 C SER 471 1_555 ? ? ? ? ? ? ? 1.332 ? covale19 covale ? ? B ILE 45 C ? ? ? 1_555 B MSE 46 N ? ? C ILE 473 C MSE 474 1_555 ? ? ? ? ? ? ? 1.331 ? covale20 covale ? ? B MSE 46 C ? ? ? 1_555 B GLU 47 N ? ? C MSE 474 C GLU 475 1_555 ? ? ? ? ? ? ? 1.335 ? covale21 covale ? ? B ALA 105 C ? ? ? 1_555 B MSE 106 N ? ? C ALA 533 C MSE 534 1_555 ? ? ? ? ? ? ? 1.332 ? covale22 covale ? ? B MSE 106 C ? ? ? 1_555 B LEU 107 N ? ? C MSE 534 C LEU 535 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 127 A . ? GLY 555 A GLU 128 A ? GLU 556 A 1 1.98 2 GLY 127 B . ? GLY 555 C GLU 128 B ? GLU 556 C 1 3.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 2 ? D ? 4 ? E ? 3 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel E 1 2 ? parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 23 ? PRO A 24 ? THR A 451 PRO A 452 A 2 PHE A 132 ? THR A 140 ? PHE A 560 THR A 568 A 3 LEU A 117 ? ASN A 124 ? LEU A 545 ASN A 552 A 4 PHE A 96 ? PHE A 98 ? PHE A 524 PHE A 526 B 1 ILE A 31 ? THR A 32 ? ILE A 459 THR A 460 B 2 ARG A 52 ? PHE A 56 ? ARG A 480 PHE A 484 B 3 ILE A 63 ? PHE A 68 ? ILE A 491 PHE A 496 C 1 ILE A 36 ? LEU A 37 ? ILE A 464 LEU A 465 C 2 THR A 81 ? PRO A 82 ? THR A 509 PRO A 510 D 1 THR B 23 ? PRO B 24 ? THR C 451 PRO C 452 D 2 PHE B 132 ? THR B 140 ? PHE C 560 THR C 568 D 3 LEU B 117 ? ASN B 124 ? LEU C 545 ASN C 552 D 4 PHE B 96 ? PHE B 98 ? PHE C 524 PHE C 526 E 1 ILE B 31 ? THR B 32 ? ILE C 459 THR C 460 E 2 ARG B 52 ? PHE B 56 ? ARG C 480 PHE C 484 E 3 ILE B 63 ? PHE B 68 ? ILE C 491 PHE C 496 F 1 ILE B 36 ? LEU B 37 ? ILE C 464 LEU C 465 F 2 THR B 81 ? PRO B 82 ? THR C 509 PRO C 510 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 23 ? N THR A 451 O ILE A 138 ? O ILE A 566 A 2 3 O PHE A 132 ? O PHE A 560 N ASN A 124 ? N ASN A 552 A 3 4 O ILE A 119 ? O ILE A 547 N VAL A 97 ? N VAL A 525 B 1 2 N ILE A 31 ? N ILE A 459 O PHE A 56 ? O PHE A 484 B 2 3 N VAL A 55 ? N VAL A 483 O ASP A 65 ? O ASP A 493 C 1 2 N LEU A 37 ? N LEU A 465 O THR A 81 ? O THR A 509 D 1 2 N THR B 23 ? N THR C 451 O ILE B 138 ? O ILE C 566 D 2 3 O PHE B 132 ? O PHE C 560 N ASN B 124 ? N ASN C 552 D 3 4 O ILE B 119 ? O ILE C 547 N VAL B 97 ? N VAL C 525 E 1 2 N ILE B 31 ? N ILE C 459 O PHE B 56 ? O PHE C 484 E 2 3 N VAL B 55 ? N VAL C 483 O ASP B 65 ? O ASP C 493 F 1 2 N LEU B 37 ? N LEU C 465 O THR B 81 ? O THR C 509 # _database_PDB_matrix.entry_id 4IY2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4IY2 _atom_sites.fract_transf_matrix[1][1] 0.009755 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009561 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009461 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 429 429 MSE MSE A . n A 1 2 GLU 2 430 430 GLU GLU A . n A 1 3 GLU 3 431 431 GLU GLU A . n A 1 4 LEU 4 432 432 LEU LEU A . n A 1 5 ASN 5 433 433 ASN ASN A . n A 1 6 ILE 6 434 434 ILE ILE A . n A 1 7 ILE 7 435 435 ILE ILE A . n A 1 8 GLN 8 436 436 GLN GLN A . n A 1 9 GLY 9 437 437 GLY GLY A . n A 1 10 ALA 10 438 438 ALA ALA A . n A 1 11 LEU 11 439 439 LEU LEU A . n A 1 12 GLU 12 440 440 GLU GLU A . n A 1 13 LEU 13 441 441 LEU LEU A . n A 1 14 ARG 14 442 442 ARG ARG A . n A 1 15 THR 15 443 443 THR THR A . n A 1 16 LYS 16 444 444 LYS LYS A . n A 1 17 THR 17 445 445 THR THR A . n A 1 18 VAL 18 446 446 VAL VAL A . n A 1 19 GLU 19 447 447 GLU GLU A . n A 1 20 ASP 20 448 448 ASP ASP A . n A 1 21 VAL 21 449 449 VAL VAL A . n A 1 22 MSE 22 450 450 MSE MSE A . n A 1 23 THR 23 451 451 THR THR A . n A 1 24 PRO 24 452 452 PRO PRO A . n A 1 25 LEU 25 453 453 LEU LEU A . n A 1 26 ARG 26 454 454 ARG ARG A . n A 1 27 ASP 27 455 455 ASP ASP A . n A 1 28 CYS 28 456 456 CYS CYS A . n A 1 29 PHE 29 457 457 PHE PHE A . n A 1 30 MSE 30 458 458 MSE MSE A . n A 1 31 ILE 31 459 459 ILE ILE A . n A 1 32 THR 32 460 460 THR THR A . n A 1 33 GLY 33 461 461 GLY GLY A . n A 1 34 GLU 34 462 462 GLU GLU A . n A 1 35 ALA 35 463 463 ALA ALA A . n A 1 36 ILE 36 464 464 ILE ILE A . n A 1 37 LEU 37 465 465 LEU LEU A . n A 1 38 ASP 38 466 466 ASP ASP A . n A 1 39 PHE 39 467 467 PHE PHE A . n A 1 40 ASN 40 468 468 ASN ASN A . n A 1 41 THR 41 469 469 THR THR A . n A 1 42 MSE 42 470 470 MSE MSE A . n A 1 43 SER 43 471 471 SER SER A . n A 1 44 GLU 44 472 472 GLU GLU A . n A 1 45 ILE 45 473 473 ILE ILE A . n A 1 46 MSE 46 474 474 MSE MSE A . n A 1 47 GLU 47 475 475 GLU GLU A . n A 1 48 SER 48 476 476 SER SER A . n A 1 49 GLY 49 477 477 GLY GLY A . n A 1 50 TYR 50 478 478 TYR TYR A . n A 1 51 THR 51 479 479 THR THR A . n A 1 52 ARG 52 480 480 ARG ARG A . n A 1 53 ILE 53 481 481 ILE ILE A . n A 1 54 PRO 54 482 482 PRO PRO A . n A 1 55 VAL 55 483 483 VAL VAL A . n A 1 56 PHE 56 484 484 PHE PHE A . n A 1 57 GLU 57 485 485 GLU GLU A . n A 1 58 GLY 58 486 486 GLY GLY A . n A 1 59 GLU 59 487 487 GLU GLU A . n A 1 60 ARG 60 488 488 ARG ARG A . n A 1 61 SER 61 489 489 SER SER A . n A 1 62 ASN 62 490 490 ASN ASN A . n A 1 63 ILE 63 491 491 ILE ILE A . n A 1 64 VAL 64 492 492 VAL VAL A . n A 1 65 ASP 65 493 493 ASP ASP A . n A 1 66 LEU 66 494 494 LEU LEU A . n A 1 67 LEU 67 495 495 LEU LEU A . n A 1 68 PHE 68 496 496 PHE PHE A . n A 1 69 VAL 69 497 497 VAL VAL A . n A 1 70 LYS 70 498 498 LYS LYS A . n A 1 71 ASP 71 499 499 ASP ASP A . n A 1 72 LEU 72 500 500 LEU LEU A . n A 1 73 ALA 73 501 501 ALA ALA A . n A 1 74 PHE 74 502 502 PHE PHE A . n A 1 75 VAL 75 503 503 VAL VAL A . n A 1 76 ASP 76 504 504 ASP ASP A . n A 1 77 PRO 77 505 505 PRO PRO A . n A 1 78 ASP 78 506 506 ASP ASP A . n A 1 79 ASP 79 507 507 ASP ASP A . n A 1 80 CYS 80 508 508 CYS CYS A . n A 1 81 THR 81 509 509 THR THR A . n A 1 82 PRO 82 510 510 PRO PRO A . n A 1 83 LEU 83 511 511 LEU LEU A . n A 1 84 LYS 84 512 512 LYS LYS A . n A 1 85 THR 85 513 513 THR THR A . n A 1 86 ILE 86 514 514 ILE ILE A . n A 1 87 THR 87 515 515 THR THR A . n A 1 88 LYS 88 516 516 LYS LYS A . n A 1 89 PHE 89 517 517 PHE PHE A . n A 1 90 TYR 90 518 518 TYR TYR A . n A 1 91 ASN 91 519 519 ASN ASN A . n A 1 92 HIS 92 520 520 HIS HIS A . n A 1 93 PRO 93 521 521 PRO PRO A . n A 1 94 LEU 94 522 522 LEU LEU A . n A 1 95 HIS 95 523 523 HIS HIS A . n A 1 96 PHE 96 524 524 PHE PHE A . n A 1 97 VAL 97 525 525 VAL VAL A . n A 1 98 PHE 98 526 526 PHE PHE A . n A 1 99 ASN 99 527 527 ASN ASN A . n A 1 100 ASP 100 528 528 ASP ASP A . n A 1 101 THR 101 529 529 THR THR A . n A 1 102 LYS 102 530 530 LYS LYS A . n A 1 103 LEU 103 531 531 LEU LEU A . n A 1 104 ASP 104 532 532 ASP ASP A . n A 1 105 ALA 105 533 533 ALA ALA A . n A 1 106 MSE 106 534 534 MSE MSE A . n A 1 107 LEU 107 535 535 LEU LEU A . n A 1 108 GLU 108 536 536 GLU GLU A . n A 1 109 GLU 109 537 537 GLU GLU A . n A 1 110 PHE 110 538 538 PHE PHE A . n A 1 111 LYS 111 539 539 LYS LYS A . n A 1 112 LYS 112 540 540 LYS LYS A . n A 1 113 GLY 113 541 541 GLY GLY A . n A 1 114 LYS 114 542 542 LYS LYS A . n A 1 115 SER 115 543 543 SER ALA A . n A 1 116 HIS 116 544 544 HIS HIS A . n A 1 117 LEU 117 545 545 LEU LEU A . n A 1 118 ALA 118 546 546 ALA ALA A . n A 1 119 ILE 119 547 547 ILE ILE A . n A 1 120 VAL 120 548 548 VAL VAL A . n A 1 121 GLN 121 549 549 GLN GLN A . n A 1 122 ARG 122 550 550 ARG ARG A . n A 1 123 VAL 123 551 551 VAL VAL A . n A 1 124 ASN 124 552 552 ASN ASN A . n A 1 125 ASN 125 553 553 ASN ASN A . n A 1 126 GLU 126 554 554 GLU GLU A . n A 1 127 GLY 127 555 555 GLY GLY A . n A 1 128 GLU 128 556 556 GLU GLU A . n A 1 129 GLY 129 557 557 GLY GLY A . n A 1 130 ASP 130 558 558 ASP ASP A . n A 1 131 PRO 131 559 559 PRO PRO A . n A 1 132 PHE 132 560 560 PHE PHE A . n A 1 133 TYR 133 561 561 TYR TYR A . n A 1 134 GLU 134 562 562 GLU GLU A . n A 1 135 VAL 135 563 563 VAL VAL A . n A 1 136 LEU 136 564 564 LEU LEU A . n A 1 137 GLY 137 565 565 GLY GLY A . n A 1 138 ILE 138 566 566 ILE ILE A . n A 1 139 VAL 139 567 567 VAL VAL A . n A 1 140 THR 140 568 568 THR THR A . n A 1 141 LEU 141 569 569 LEU LEU A . n A 1 142 GLU 142 570 570 GLU GLU A . n A 1 143 ASP 143 571 571 ASP ASP A . n A 1 144 VAL 144 572 572 VAL VAL A . n A 1 145 ILE 145 573 573 ILE ILE A . n A 1 146 GLU 146 574 574 GLU GLU A . n A 1 147 GLU 147 575 575 GLU GLU A . n A 1 148 ILE 148 576 576 ILE ILE A . n A 1 149 ILE 149 577 577 ILE ILE A . n A 1 150 LYS 150 578 578 LYS LYS A . n A 1 151 SER 151 579 579 SER SER A . n A 1 152 GLU 152 580 580 GLU GLU A . n A 1 153 ILE 153 581 ? ? ? A . n A 1 154 LEU 154 582 ? ? ? A . n A 1 155 ASP 155 583 ? ? ? A . n A 1 156 GLU 156 584 ? ? ? A . n B 1 1 MSE 1 429 429 MSE MSE C . n B 1 2 GLU 2 430 430 GLU GLU C . n B 1 3 GLU 3 431 431 GLU GLU C . n B 1 4 LEU 4 432 432 LEU LEU C . n B 1 5 ASN 5 433 433 ASN ASN C . n B 1 6 ILE 6 434 434 ILE ILE C . n B 1 7 ILE 7 435 435 ILE ILE C . n B 1 8 GLN 8 436 436 GLN GLN C . n B 1 9 GLY 9 437 437 GLY GLY C . n B 1 10 ALA 10 438 438 ALA ALA C . n B 1 11 LEU 11 439 439 LEU LEU C . n B 1 12 GLU 12 440 440 GLU GLU C . n B 1 13 LEU 13 441 441 LEU LEU C . n B 1 14 ARG 14 442 442 ARG ARG C . n B 1 15 THR 15 443 443 THR THR C . n B 1 16 LYS 16 444 444 LYS LYS C . n B 1 17 THR 17 445 445 THR THR C . n B 1 18 VAL 18 446 446 VAL VAL C . n B 1 19 GLU 19 447 447 GLU GLU C . n B 1 20 ASP 20 448 448 ASP ASP C . n B 1 21 VAL 21 449 449 VAL VAL C . n B 1 22 MSE 22 450 450 MSE MSE C . n B 1 23 THR 23 451 451 THR THR C . n B 1 24 PRO 24 452 452 PRO PRO C . n B 1 25 LEU 25 453 453 LEU LEU C . n B 1 26 ARG 26 454 454 ARG ARG C . n B 1 27 ASP 27 455 455 ASP ASP C . n B 1 28 CYS 28 456 456 CYS CYS C . n B 1 29 PHE 29 457 457 PHE PHE C . n B 1 30 MSE 30 458 458 MSE MSE C . n B 1 31 ILE 31 459 459 ILE ILE C . n B 1 32 THR 32 460 460 THR THR C . n B 1 33 GLY 33 461 461 GLY GLY C . n B 1 34 GLU 34 462 462 GLU GLU C . n B 1 35 ALA 35 463 463 ALA ALA C . n B 1 36 ILE 36 464 464 ILE ILE C . n B 1 37 LEU 37 465 465 LEU LEU C . n B 1 38 ASP 38 466 466 ASP ASP C . n B 1 39 PHE 39 467 467 PHE PHE C . n B 1 40 ASN 40 468 468 ASN ASN C . n B 1 41 THR 41 469 469 THR THR C . n B 1 42 MSE 42 470 470 MSE MSE C . n B 1 43 SER 43 471 471 SER SER C . n B 1 44 GLU 44 472 472 GLU GLU C . n B 1 45 ILE 45 473 473 ILE ILE C . n B 1 46 MSE 46 474 474 MSE MSE C . n B 1 47 GLU 47 475 475 GLU GLU C . n B 1 48 SER 48 476 476 SER SER C . n B 1 49 GLY 49 477 477 GLY GLY C . n B 1 50 TYR 50 478 478 TYR TYR C . n B 1 51 THR 51 479 479 THR THR C . n B 1 52 ARG 52 480 480 ARG ARG C . n B 1 53 ILE 53 481 481 ILE ILE C . n B 1 54 PRO 54 482 482 PRO PRO C . n B 1 55 VAL 55 483 483 VAL VAL C . n B 1 56 PHE 56 484 484 PHE PHE C . n B 1 57 GLU 57 485 485 GLU GLU C . n B 1 58 GLY 58 486 486 GLY GLY C . n B 1 59 GLU 59 487 487 GLU GLU C . n B 1 60 ARG 60 488 488 ARG ARG C . n B 1 61 SER 61 489 489 SER SER C . n B 1 62 ASN 62 490 490 ASN ASN C . n B 1 63 ILE 63 491 491 ILE ILE C . n B 1 64 VAL 64 492 492 VAL VAL C . n B 1 65 ASP 65 493 493 ASP ASP C . n B 1 66 LEU 66 494 494 LEU LEU C . n B 1 67 LEU 67 495 495 LEU LEU C . n B 1 68 PHE 68 496 496 PHE PHE C . n B 1 69 VAL 69 497 497 VAL VAL C . n B 1 70 LYS 70 498 498 LYS LYS C . n B 1 71 ASP 71 499 499 ASP ASP C . n B 1 72 LEU 72 500 500 LEU LEU C . n B 1 73 ALA 73 501 501 ALA ALA C . n B 1 74 PHE 74 502 502 PHE PHE C . n B 1 75 VAL 75 503 503 VAL VAL C . n B 1 76 ASP 76 504 504 ASP ASP C . n B 1 77 PRO 77 505 505 PRO PRO C . n B 1 78 ASP 78 506 506 ASP ASP C . n B 1 79 ASP 79 507 507 ASP ASP C . n B 1 80 CYS 80 508 508 CYS CYS C . n B 1 81 THR 81 509 509 THR THR C . n B 1 82 PRO 82 510 510 PRO PRO C . n B 1 83 LEU 83 511 511 LEU LEU C . n B 1 84 LYS 84 512 512 LYS LYS C . n B 1 85 THR 85 513 513 THR THR C . n B 1 86 ILE 86 514 514 ILE ILE C . n B 1 87 THR 87 515 515 THR THR C . n B 1 88 LYS 88 516 516 LYS LYS C . n B 1 89 PHE 89 517 517 PHE PHE C . n B 1 90 TYR 90 518 518 TYR TYR C . n B 1 91 ASN 91 519 519 ASN ASN C . n B 1 92 HIS 92 520 520 HIS HIS C . n B 1 93 PRO 93 521 521 PRO PRO C . n B 1 94 LEU 94 522 522 LEU LEU C . n B 1 95 HIS 95 523 523 HIS HIS C . n B 1 96 PHE 96 524 524 PHE PHE C . n B 1 97 VAL 97 525 525 VAL VAL C . n B 1 98 PHE 98 526 526 PHE PHE C . n B 1 99 ASN 99 527 527 ASN ASN C . n B 1 100 ASP 100 528 528 ASP ASP C . n B 1 101 THR 101 529 529 THR THR C . n B 1 102 LYS 102 530 530 LYS LYS C . n B 1 103 LEU 103 531 531 LEU LEU C . n B 1 104 ASP 104 532 532 ASP ASP C . n B 1 105 ALA 105 533 533 ALA ALA C . n B 1 106 MSE 106 534 534 MSE MSE C . n B 1 107 LEU 107 535 535 LEU LEU C . n B 1 108 GLU 108 536 536 GLU GLU C . n B 1 109 GLU 109 537 537 GLU GLU C . n B 1 110 PHE 110 538 538 PHE PHE C . n B 1 111 LYS 111 539 539 LYS LYS C . n B 1 112 LYS 112 540 540 LYS LYS C . n B 1 113 GLY 113 541 541 GLY GLY C . n B 1 114 LYS 114 542 542 LYS LYS C . n B 1 115 SER 115 543 543 SER ALA C . n B 1 116 HIS 116 544 544 HIS HIS C . n B 1 117 LEU 117 545 545 LEU LEU C . n B 1 118 ALA 118 546 546 ALA ALA C . n B 1 119 ILE 119 547 547 ILE ILE C . n B 1 120 VAL 120 548 548 VAL VAL C . n B 1 121 GLN 121 549 549 GLN GLN C . n B 1 122 ARG 122 550 550 ARG ARG C . n B 1 123 VAL 123 551 551 VAL VAL C . n B 1 124 ASN 124 552 552 ASN ASN C . n B 1 125 ASN 125 553 553 ASN ASN C . n B 1 126 GLU 126 554 554 GLU GLU C . n B 1 127 GLY 127 555 555 GLY GLY C . n B 1 128 GLU 128 556 556 GLU GLU C . n B 1 129 GLY 129 557 557 GLY GLY C . n B 1 130 ASP 130 558 558 ASP ASP C . n B 1 131 PRO 131 559 559 PRO PRO C . n B 1 132 PHE 132 560 560 PHE PHE C . n B 1 133 TYR 133 561 561 TYR TYR C . n B 1 134 GLU 134 562 562 GLU GLU C . n B 1 135 VAL 135 563 563 VAL VAL C . n B 1 136 LEU 136 564 564 LEU LEU C . n B 1 137 GLY 137 565 565 GLY GLY C . n B 1 138 ILE 138 566 566 ILE ILE C . n B 1 139 VAL 139 567 567 VAL VAL C . n B 1 140 THR 140 568 568 THR THR C . n B 1 141 LEU 141 569 569 LEU LEU C . n B 1 142 GLU 142 570 570 GLU GLU C . n B 1 143 ASP 143 571 571 ASP ASP C . n B 1 144 VAL 144 572 572 VAL VAL C . n B 1 145 ILE 145 573 573 ILE ILE C . n B 1 146 GLU 146 574 574 GLU GLU C . n B 1 147 GLU 147 575 575 GLU GLU C . n B 1 148 ILE 148 576 576 ILE ILE C . n B 1 149 ILE 149 577 577 ILE ILE C . n B 1 150 LYS 150 578 578 LYS LYS C . n B 1 151 SER 151 579 579 SER SER C . n B 1 152 GLU 152 580 580 GLU GLU C . n B 1 153 ILE 153 581 ? ? ? C . n B 1 154 LEU 154 582 ? ? ? C . n B 1 155 ASP 155 583 ? ? ? C . n B 1 156 GLU 156 584 ? ? ? C . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 429 ? MET SELENOMETHIONINE 2 A MSE 22 A MSE 450 ? MET SELENOMETHIONINE 3 A MSE 30 A MSE 458 ? MET SELENOMETHIONINE 4 A MSE 42 A MSE 470 ? MET SELENOMETHIONINE 5 A MSE 46 A MSE 474 ? MET SELENOMETHIONINE 6 A MSE 106 A MSE 534 ? MET SELENOMETHIONINE 7 B MSE 1 C MSE 429 ? MET SELENOMETHIONINE 8 B MSE 22 C MSE 450 ? MET SELENOMETHIONINE 9 B MSE 30 C MSE 458 ? MET SELENOMETHIONINE 10 B MSE 42 C MSE 470 ? MET SELENOMETHIONINE 11 B MSE 46 C MSE 474 ? MET SELENOMETHIONINE 12 B MSE 106 C MSE 534 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2650 ? 1 MORE -22 ? 1 'SSA (A^2)' 15600 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-03-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 554 ? ? -89.83 37.21 2 1 ASP C 466 ? ? -72.20 -166.04 3 1 GLU C 554 ? ? -89.13 36.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 543 ? OG ? A SER 115 OG 2 1 Y 1 A GLU 556 ? CG ? A GLU 128 CG 3 1 Y 1 A GLU 556 ? CD ? A GLU 128 CD 4 1 Y 1 A GLU 556 ? OE1 ? A GLU 128 OE1 5 1 Y 1 A GLU 556 ? OE2 ? A GLU 128 OE2 6 1 Y 1 C SER 543 ? OG ? B SER 115 OG 7 1 Y 1 C GLU 556 ? CG ? B GLU 128 CG 8 1 Y 1 C GLU 556 ? CD ? B GLU 128 CD 9 1 Y 1 C GLU 556 ? OE1 ? B GLU 128 OE1 10 1 Y 1 C GLU 556 ? OE2 ? B GLU 128 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 581 ? A ILE 153 2 1 Y 1 A LEU 582 ? A LEU 154 3 1 Y 1 A ASP 583 ? A ASP 155 4 1 Y 1 A GLU 584 ? A GLU 156 5 1 Y 1 C ILE 581 ? B ILE 153 6 1 Y 1 C LEU 582 ? B LEU 154 7 1 Y 1 C ASP 583 ? B ASP 155 8 1 Y 1 C GLU 584 ? B GLU 156 #