data_4J1B # _entry.id 4J1B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4J1B RCSB RCSB077470 WWPDB D_1000077470 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4J1A _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4J1B _pdbx_database_status.recvd_initial_deposition_date 2013-02-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vergara, A.' 1 'Merlino, A.' 2 # _citation.id primary _citation.title ;Interaction of Anticancer Ruthenium Compounds with Proteins: High-Resolution X-ray Structures and Raman Microscopy Studies of the Adduct between Hen Egg White Lysozyme and AziRu. ; _citation.journal_abbrev Inorg.Chem. _citation.journal_volume 52 _citation.page_first 4157 _citation.page_last 4159 _citation.year 2013 _citation.journal_id_ASTM INOCAJ _citation.country US _citation.journal_id_ISSN 0020-1669 _citation.journal_id_CSD 0009 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23517183 _citation.pdbx_database_id_DOI 10.1021/ic4004142 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vergara, A.' 1 primary ;D'Errico, G. ; 2 primary 'Montesarchio, D.' 3 primary 'Mangiapia, G.' 4 primary 'Paduano, L.' 5 primary 'Merlino, A.' 6 # _cell.entry_id 4J1B _cell.length_a 78.009 _cell.length_b 78.009 _cell.length_c 37.192 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4J1B _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lysozyme C' 14331.160 1 3.2.1.17 ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'RUTHENIUM ION' 101.070 1 ? ? ? ? 5 water nat water 18.015 129 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C, Allergen Gal d IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name bantam,chickens _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.pdbx_db_accession P00698 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4J1B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RU non-polymer . 'RUTHENIUM ION' ? 'Ru 3' 101.070 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4J1B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details ;1.0-1.4 M NaCl, 0.050 M acetate buffer.Crystals were soaked in a saturated solution of AziRu containing 2.4 M NaCl in the same buffer. After a few hours, crystals changed their colour to yellow and then green. In a few days they turned to black, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4J1B _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.66 _reflns.number_obs 13847 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 23.3 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4J1B _refine.ls_number_reflns_obs 11850 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 300954.92 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.57 _refine.ls_d_res_high 1.66 _refine.ls_percent_reflns_obs 84.2 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.9 _refine.ls_number_reflns_R_free 814 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.3 _refine.aniso_B[1][1] 2.26 _refine.aniso_B[2][2] 2.26 _refine.aniso_B[3][3] -4.53 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.38 _refine.solvent_model_param_bsol 56.1439 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4J1B _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.08 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.21 _refine_analyze.Luzzati_sigma_a_free 0.05 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1134 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 33.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.022 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 2.1 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 23.9 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 1.29 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it 1.28 1.50 ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it 1.79 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scbond_it 2.77 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scangle_it 2.95 2.50 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.66 _refine_ls_shell.d_res_low 1.76 _refine_ls_shell.number_reflns_R_work 1321 _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.percent_reflns_obs 61.8 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 6.5 _refine_ls_shell.number_reflns_R_free 92 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4J1B _struct.title 'X-ray structure of the adduct between hen egg white lysozyme and AziRu (black crystal)' _struct.pdbx_descriptor 'Lysozyme C (E.C.3.2.1.17)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4J1B _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'C-type lysozyme/alpha-lactalbumin family, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? HIS A 15 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 2 ASN A 19 ? TYR A 23 ? ASN A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 3 SER A 24 ? ASN A 37 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P4 4 PRO A 79 ? SER A 85 ? PRO A 79 SER A 85 5 ? 7 HELX_P HELX_P5 5 ILE A 88 ? SER A 100 ? ILE A 88 SER A 100 1 ? 13 HELX_P HELX_P6 6 ASN A 103 ? ALA A 107 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P7 7 TRP A 108 ? CYS A 115 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P8 8 ASP A 119 ? ARG A 125 ? ASP A 119 ARG A 125 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.025 ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.030 ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.078 ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.069 ? metalc1 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 203 A HOH 324 1_555 ? ? ? ? ? ? ? 2.255 ? metalc2 metalc ? ? A SER 60 O ? ? ? 1_555 D NA . NA ? ? A SER 60 A NA 203 1_555 ? ? ? ? ? ? ? 2.352 ? metalc3 metalc ? ? E RU . RU ? ? ? 1_555 F HOH . O ? ? A RU 204 A HOH 304 1_555 ? ? ? ? ? ? ? 2.449 ? metalc4 metalc ? ? A ARG 73 O A ? ? 1_555 D NA . NA ? ? A ARG 73 A NA 203 1_555 ? ? ? ? ? ? ? 2.462 ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 203 A HOH 319 1_555 ? ? ? ? ? ? ? 2.470 ? metalc6 metalc ? ? E RU . RU ? ? ? 1_555 F HOH . O ? ? A RU 204 A HOH 301 1_555 ? ? ? ? ? ? ? 2.486 ? metalc7 metalc ? ? A SER 72 OG ? ? ? 1_555 D NA . NA ? ? A SER 72 A NA 203 1_555 ? ? ? ? ? ? ? 2.487 ? metalc8 metalc ? ? A ASP 87 OD2 B ? ? 1_555 E RU . RU ? ? A ASP 87 A RU 204 1_555 ? ? ? ? ? ? ? 2.507 ? metalc9 metalc ? ? A HIS 15 NE2 ? ? ? 1_555 E RU . RU ? ? A HIS 15 A RU 204 1_555 ? ? ? ? ? ? ? 2.509 ? metalc10 metalc ? ? A ARG 73 O B ? ? 1_555 D NA . NA ? ? A ARG 73 A NA 203 1_555 ? ? ? ? ? ? ? 2.535 ? metalc11 metalc ? ? E RU . RU ? ? ? 1_555 F HOH . O ? ? A RU 204 A HOH 302 1_555 ? ? ? ? ? ? ? 2.562 ? metalc12 metalc ? ? E RU . RU ? ? ? 1_555 F HOH . O ? ? A RU 204 A HOH 303 1_555 ? ? ? ? ? ? ? 2.580 ? metalc13 metalc ? ? A CYS 64 O ? ? ? 1_555 D NA . NA ? ? A CYS 64 A NA 203 1_555 ? ? ? ? ? ? ? 2.618 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45 A 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53 A 3 ILE A 58 ? ASN A 59 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 44 ? N ASN A 44 O ASP A 52 ? O ASP A 52 A 2 3 N TYR A 53 ? N TYR A 53 O ILE A 58 ? O ILE A 58 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 201' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE CL A 202' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 203' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE RU A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TYR A 23 ? TYR A 23 . ? 1_555 ? 2 AC1 2 ASN A 113 ? ASN A 113 . ? 4_445 ? 3 AC2 7 ASN A 65 ? ASN A 65 . ? 1_555 ? 4 AC2 7 GLY A 67 ? GLY A 67 . ? 1_555 ? 5 AC2 7 ARG A 68 ? ARG A 68 . ? 1_555 ? 6 AC2 7 THR A 69 ? THR A 69 . ? 1_555 ? 7 AC2 7 SER A 72 ? SER A 72 . ? 1_555 ? 8 AC2 7 HOH F . ? HOH A 319 . ? 1_555 ? 9 AC2 7 HOH F . ? HOH A 352 . ? 1_555 ? 10 AC3 6 SER A 60 ? SER A 60 . ? 1_555 ? 11 AC3 6 CYS A 64 ? CYS A 64 . ? 1_555 ? 12 AC3 6 SER A 72 ? SER A 72 . ? 1_555 ? 13 AC3 6 ARG A 73 ? ARG A 73 . ? 1_555 ? 14 AC3 6 HOH F . ? HOH A 319 . ? 1_555 ? 15 AC3 6 HOH F . ? HOH A 324 . ? 1_555 ? 16 AC4 7 ARG A 14 ? ARG A 14 . ? 1_555 ? 17 AC4 7 HIS A 15 ? HIS A 15 . ? 1_555 ? 18 AC4 7 ASP A 87 ? ASP A 87 . ? 1_555 ? 19 AC4 7 HOH F . ? HOH A 301 . ? 1_555 ? 20 AC4 7 HOH F . ? HOH A 302 . ? 1_555 ? 21 AC4 7 HOH F . ? HOH A 303 . ? 1_555 ? 22 AC4 7 HOH F . ? HOH A 304 . ? 1_555 ? # _database_PDB_matrix.entry_id 4J1B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4J1B _atom_sites.fract_transf_matrix[1][1] 0.012819 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012819 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026888 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O RU S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 306 ? F HOH . 2 1 A HOH 369 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 324 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? A SER 60 ? A SER 60 ? 1_555 170.8 ? 2 O ? F HOH . ? A HOH 324 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O A A ARG 73 ? A ARG 73 ? 1_555 85.9 ? 3 O ? A SER 60 ? A SER 60 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O A A ARG 73 ? A ARG 73 ? 1_555 92.5 ? 4 O ? F HOH . ? A HOH 324 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 84.8 ? 5 O ? A SER 60 ? A SER 60 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 97.9 ? 6 O A A ARG 73 ? A ARG 73 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 167.9 ? 7 O ? F HOH . ? A HOH 324 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 84.4 ? 8 O ? A SER 60 ? A SER 60 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 87.1 ? 9 O A A ARG 73 ? A ARG 73 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 102.9 ? 10 O ? F HOH . ? A HOH 319 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 83.9 ? 11 O ? F HOH . ? A HOH 324 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 87.4 ? 12 O ? A SER 60 ? A SER 60 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 91.1 ? 13 O A A ARG 73 ? A ARG 73 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 1.5 ? 14 O ? F HOH . ? A HOH 319 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 168.9 ? 15 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 103.3 ? 16 O ? F HOH . ? A HOH 324 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 101.1 ? 17 O ? A SER 60 ? A SER 60 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 88.0 ? 18 O A A ARG 73 ? A ARG 73 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 89.2 ? 19 O ? F HOH . ? A HOH 319 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 85.0 ? 20 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 167.1 ? 21 O B A ARG 73 ? A ARG 73 ? 1_555 NA ? D NA . ? A NA 203 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 88.7 ? 22 O ? F HOH . ? A HOH 304 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 301 ? 1_555 102.7 ? 23 O ? F HOH . ? A HOH 304 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 OD2 B A ASP 87 ? A ASP 87 ? 1_555 71.7 ? 24 O ? F HOH . ? A HOH 301 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 OD2 B A ASP 87 ? A ASP 87 ? 1_555 110.8 ? 25 O ? F HOH . ? A HOH 304 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 164.7 ? 26 O ? F HOH . ? A HOH 301 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 91.2 ? 27 OD2 B A ASP 87 ? A ASP 87 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 97.4 ? 28 O ? F HOH . ? A HOH 304 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 88.9 ? 29 O ? F HOH . ? A HOH 301 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 85.3 ? 30 OD2 B A ASP 87 ? A ASP 87 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 156.8 ? 31 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 98.9 ? 32 O ? F HOH . ? A HOH 304 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 74.7 ? 33 O ? F HOH . ? A HOH 301 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 177.0 ? 34 OD2 B A ASP 87 ? A ASP 87 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 70.0 ? 35 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 91.5 ? 36 O ? F HOH . ? A HOH 302 ? 1_555 RU ? E RU . ? A RU 204 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 93.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-03 2 'Structure model' 1 1 2013-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_entry_details.entry_id 4J1B _pdbx_entry_details.nonpolymer_details ;HEN EGG WHITE LYSOZYME WAS CRYSTALLIZED WITH AN ORGANO-METALLIC RUTHENIUM(III) COMPOUND, CALLED AZIRU [SODIUM TRANS-(DIMETHYLSULFOXIDE)-PYRIDINE TETRACHLORO-RUTHENATE(III)]. AZIRU LOSES ALL ITS ORIGINAL LIGANDS, RU IS COORDINATED BY ATOMS OF HIS15, ASP87 AND WATER MOLECULES. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OXT A LEU 129 ? ? 1_555 OXT A LEU 129 ? ? 7_554 1.94 2 1 O A HOH 404 ? ? 1_555 O A HOH 404 ? ? 7_554 2.08 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 21 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 48.73 _pdbx_validate_torsion.psi 29.40 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SODIUM ION' NA 4 'RUTHENIUM ION' RU 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 201 1 CL CL A . C 2 CL 1 202 2 CL CL A . D 3 NA 1 203 10 NA NA A . E 4 RU 1 204 5000 RU 1J8 A . F 5 HOH 1 301 5000 HOH 1J8 A . F 5 HOH 2 302 5000 HOH 1J8 A . F 5 HOH 3 303 5000 HOH 1J8 A . F 5 HOH 4 304 5000 HOH 1J8 A . F 5 HOH 5 305 4 HOH HOH A . F 5 HOH 6 306 5 HOH HOH A . F 5 HOH 7 307 6 HOH HOH A . F 5 HOH 8 308 7 HOH HOH A . F 5 HOH 9 309 8 HOH HOH A . F 5 HOH 10 310 9 HOH HOH A . F 5 HOH 11 311 11 HOH HOH A . F 5 HOH 12 312 12 HOH HOH A . F 5 HOH 13 313 18 HOH HOH A . F 5 HOH 14 314 19 HOH HOH A . F 5 HOH 15 315 22 HOH HOH A . F 5 HOH 16 316 23 HOH HOH A . F 5 HOH 17 317 26 HOH HOH A . F 5 HOH 18 318 28 HOH HOH A . F 5 HOH 19 319 30 HOH HOH A . F 5 HOH 20 320 31 HOH HOH A . F 5 HOH 21 321 32 HOH HOH A . F 5 HOH 22 322 33 HOH HOH A . F 5 HOH 23 323 35 HOH HOH A . F 5 HOH 24 324 36 HOH HOH A . F 5 HOH 25 325 37 HOH HOH A . F 5 HOH 26 326 39 HOH HOH A . F 5 HOH 27 327 40 HOH HOH A . F 5 HOH 28 328 41 HOH HOH A . F 5 HOH 29 329 42 HOH HOH A . F 5 HOH 30 330 43 HOH HOH A . F 5 HOH 31 331 45 HOH HOH A . F 5 HOH 32 332 46 HOH HOH A . F 5 HOH 33 333 48 HOH HOH A . F 5 HOH 34 334 50 HOH HOH A . F 5 HOH 35 335 51 HOH HOH A . F 5 HOH 36 336 52 HOH HOH A . F 5 HOH 37 337 53 HOH HOH A . F 5 HOH 38 338 54 HOH HOH A . F 5 HOH 39 339 58 HOH HOH A . F 5 HOH 40 340 59 HOH HOH A . F 5 HOH 41 341 60 HOH HOH A . F 5 HOH 42 342 62 HOH HOH A . F 5 HOH 43 343 64 HOH HOH A . F 5 HOH 44 344 66 HOH HOH A . F 5 HOH 45 345 67 HOH HOH A . F 5 HOH 46 346 68 HOH HOH A . F 5 HOH 47 347 69 HOH HOH A . F 5 HOH 48 348 72 HOH HOH A . F 5 HOH 49 349 74 HOH HOH A . F 5 HOH 50 350 75 HOH HOH A . F 5 HOH 51 351 76 HOH HOH A . F 5 HOH 52 352 80 HOH HOH A . F 5 HOH 53 353 81 HOH HOH A . F 5 HOH 54 354 82 HOH HOH A . F 5 HOH 55 355 83 HOH HOH A . F 5 HOH 56 356 84 HOH HOH A . F 5 HOH 57 357 88 HOH HOH A . F 5 HOH 58 358 89 HOH HOH A . F 5 HOH 59 359 90 HOH HOH A . F 5 HOH 60 360 93 HOH HOH A . F 5 HOH 61 361 94 HOH HOH A . F 5 HOH 62 362 95 HOH HOH A . F 5 HOH 63 363 107 HOH HOH A . F 5 HOH 64 364 110 HOH HOH A . F 5 HOH 65 365 113 HOH HOH A . F 5 HOH 66 366 114 HOH HOH A . F 5 HOH 67 367 117 HOH HOH A . F 5 HOH 68 368 118 HOH HOH A . F 5 HOH 69 369 123 HOH HOH A . F 5 HOH 70 370 125 HOH HOH A . F 5 HOH 71 371 126 HOH HOH A . F 5 HOH 72 372 130 HOH HOH A . F 5 HOH 73 373 132 HOH HOH A . F 5 HOH 74 374 134 HOH HOH A . F 5 HOH 75 375 135 HOH HOH A . F 5 HOH 76 376 137 HOH HOH A . F 5 HOH 77 377 141 HOH HOH A . F 5 HOH 78 378 142 HOH HOH A . F 5 HOH 79 379 145 HOH HOH A . F 5 HOH 80 380 147 HOH HOH A . F 5 HOH 81 381 148 HOH HOH A . F 5 HOH 82 382 151 HOH HOH A . F 5 HOH 83 383 168 HOH HOH A . F 5 HOH 84 384 170 HOH HOH A . F 5 HOH 85 385 172 HOH HOH A . F 5 HOH 86 386 177 HOH HOH A . F 5 HOH 87 387 180 HOH HOH A . F 5 HOH 88 388 181 HOH HOH A . F 5 HOH 89 389 182 HOH HOH A . F 5 HOH 90 390 191 HOH HOH A . F 5 HOH 91 391 193 HOH HOH A . F 5 HOH 92 392 194 HOH HOH A . F 5 HOH 93 393 195 HOH HOH A . F 5 HOH 94 394 196 HOH HOH A . F 5 HOH 95 395 197 HOH HOH A . F 5 HOH 96 396 199 HOH HOH A . F 5 HOH 97 397 201 HOH HOH A . F 5 HOH 98 398 202 HOH HOH A . F 5 HOH 99 399 203 HOH HOH A . F 5 HOH 100 400 204 HOH HOH A . F 5 HOH 101 401 205 HOH HOH A . F 5 HOH 102 402 209 HOH HOH A . F 5 HOH 103 403 211 HOH HOH A . F 5 HOH 104 404 212 HOH HOH A . F 5 HOH 105 405 213 HOH HOH A . F 5 HOH 106 406 214 HOH HOH A . F 5 HOH 107 407 215 HOH HOH A . F 5 HOH 108 408 216 HOH HOH A . F 5 HOH 109 409 217 HOH HOH A . F 5 HOH 110 410 218 HOH HOH A . F 5 HOH 111 411 219 HOH HOH A . F 5 HOH 112 412 220 HOH HOH A . F 5 HOH 113 413 221 HOH HOH A . F 5 HOH 114 414 222 HOH HOH A . F 5 HOH 115 415 223 HOH HOH A . F 5 HOH 116 416 224 HOH HOH A . F 5 HOH 117 417 225 HOH HOH A . F 5 HOH 118 418 226 HOH HOH A . F 5 HOH 119 419 227 HOH HOH A . F 5 HOH 120 420 228 HOH HOH A . F 5 HOH 121 421 229 HOH HOH A . F 5 HOH 122 422 230 HOH HOH A . F 5 HOH 123 423 231 HOH HOH A . F 5 HOH 124 424 232 HOH HOH A . F 5 HOH 125 425 233 HOH HOH A . F 5 HOH 126 426 234 HOH HOH A . F 5 HOH 127 427 235 HOH HOH A . F 5 HOH 128 428 236 HOH HOH A . F 5 HOH 129 429 237 HOH HOH A . #