data_4JV6 # _entry.id 4JV6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JV6 pdb_00004jv6 10.2210/pdb4jv6/pdb RCSB RCSB078544 ? ? WWPDB D_1000078544 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JV8 . unspecified PDB 4JVB . unspecified PDB 4JVF . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JV6 _pdbx_database_status.recvd_initial_deposition_date 2013-03-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gunther, Z.' 1 'Papke, B.' 2 'Ismail, S.' 3 'Vartak, N.' 4 'Chandra, A.' 5 'Hoffmann, M.' 6 'Hahn, S.' 7 'Triola, G.' 8 'Wittinghofer, A.' 9 'Bastiaens, P.' 10 'Waldmann, H.' 11 # _citation.id primary _citation.title 'Small molecule inhibition of the KRAS PDEd interaction impairs oncogenic KRAS signalling' _citation.journal_abbrev Nature _citation.journal_volume 497 _citation.page_first 638 _citation.page_last 642 _citation.year 2013 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23698361 _citation.pdbx_database_id_DOI 10.1038/nature12205 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zimmermann, G.' 1 ? primary 'Papke, B.' 2 ? primary 'Ismail, S.' 3 ? primary 'Vartak, N.' 4 ? primary 'Chandra, A.' 5 ? primary 'Hoffmann, M.' 6 ? primary 'Hahn, S.A.' 7 ? primary 'Triola, G.' 8 ? primary 'Wittinghofer, A.' 9 ? primary 'Bastiaens, P.I.' 10 ? primary 'Waldmann, H.' 11 ? # _cell.entry_id 4JV6 _cell.length_a 55.360 _cell.length_b 55.360 _cell.length_c 115.560 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JV6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta ; 17585.121 1 ? ? ? ? 2 non-polymer syn 1-benzyl-2-phenyl-1H-benzimidazole 284.354 2 ? ? ? ? 3 water nat water 18.015 157 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GMP-PDE delta, Protein p17' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQ KVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQ KVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 SER n 1 5 ALA n 1 6 LYS n 1 7 ASP n 1 8 GLU n 1 9 ARG n 1 10 ALA n 1 11 ARG n 1 12 GLU n 1 13 ILE n 1 14 LEU n 1 15 ARG n 1 16 GLY n 1 17 PHE n 1 18 LYS n 1 19 LEU n 1 20 ASN n 1 21 TRP n 1 22 MET n 1 23 ASN n 1 24 LEU n 1 25 ARG n 1 26 ASP n 1 27 ALA n 1 28 GLU n 1 29 THR n 1 30 GLY n 1 31 LYS n 1 32 ILE n 1 33 LEU n 1 34 TRP n 1 35 GLN n 1 36 GLY n 1 37 THR n 1 38 GLU n 1 39 ASP n 1 40 LEU n 1 41 SER n 1 42 VAL n 1 43 PRO n 1 44 GLY n 1 45 VAL n 1 46 GLU n 1 47 HIS n 1 48 GLU n 1 49 ALA n 1 50 ARG n 1 51 VAL n 1 52 PRO n 1 53 LYS n 1 54 LYS n 1 55 ILE n 1 56 LEU n 1 57 LYS n 1 58 CYS n 1 59 LYS n 1 60 ALA n 1 61 VAL n 1 62 SER n 1 63 ARG n 1 64 GLU n 1 65 LEU n 1 66 ASN n 1 67 PHE n 1 68 SER n 1 69 SER n 1 70 THR n 1 71 GLU n 1 72 GLN n 1 73 MET n 1 74 GLU n 1 75 LYS n 1 76 PHE n 1 77 ARG n 1 78 LEU n 1 79 GLU n 1 80 GLN n 1 81 LYS n 1 82 VAL n 1 83 TYR n 1 84 PHE n 1 85 LYS n 1 86 GLY n 1 87 GLN n 1 88 CYS n 1 89 LEU n 1 90 GLU n 1 91 GLU n 1 92 TRP n 1 93 PHE n 1 94 PHE n 1 95 GLU n 1 96 PHE n 1 97 GLY n 1 98 PHE n 1 99 VAL n 1 100 ILE n 1 101 PRO n 1 102 ASN n 1 103 SER n 1 104 THR n 1 105 ASN n 1 106 THR n 1 107 TRP n 1 108 GLN n 1 109 SER n 1 110 LEU n 1 111 ILE n 1 112 GLU n 1 113 ALA n 1 114 ALA n 1 115 PRO n 1 116 GLU n 1 117 SER n 1 118 GLN n 1 119 MET n 1 120 MET n 1 121 PRO n 1 122 ALA n 1 123 SER n 1 124 VAL n 1 125 LEU n 1 126 THR n 1 127 GLY n 1 128 ASN n 1 129 VAL n 1 130 ILE n 1 131 ILE n 1 132 GLU n 1 133 THR n 1 134 LYS n 1 135 PHE n 1 136 PHE n 1 137 ASP n 1 138 ASP n 1 139 ASP n 1 140 LEU n 1 141 LEU n 1 142 VAL n 1 143 SER n 1 144 THR n 1 145 SER n 1 146 ARG n 1 147 VAL n 1 148 ARG n 1 149 LEU n 1 150 PHE n 1 151 TYR n 1 152 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PDE6D, PDED' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDE6D_HUMAN _struct_ref.pdbx_db_accession O43924 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKV YFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JV6 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O43924 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 150 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 150 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JV6 GLY B 1 ? UNP O43924 ? ? 'expression tag' -1 1 1 4JV6 SER B 2 ? UNP O43924 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 18F non-polymer . 1-benzyl-2-phenyl-1H-benzimidazole ? 'C20 H16 N2' 284.354 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JV6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.91 _exptl_crystal.density_percent_sol 57.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100mM Sodium Acetate, 2.0M NaCl, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY - HORIZONTALLY FOCUSED SI(111) MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9786 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9786 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4JV6 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 27.68 _reflns.d_resolution_high 1.87 _reflns.number_obs 17518 _reflns.number_all 17518 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.87 _reflns_shell.d_res_low 1.9 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4JV6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16641 _refine.ls_number_reflns_all 16641 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.68 _refine.ls_d_res_high 1.87 _refine.ls_percent_reflns_obs 99.45 _refine.ls_R_factor_obs 0.17779 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17510 _refine.ls_R_factor_R_free 0.22739 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 876 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 34.611 _refine.aniso_B[1][1] 1.81 _refine.aniso_B[2][2] 1.81 _refine.aniso_B[3][3] -2.71 _refine.aniso_B[1][2] 0.90 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 3T5G _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.119 _refine.pdbx_overall_ESU_R_Free 0.126 _refine.overall_SU_ML 0.086 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.796 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1192 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1393 _refine_hist.d_res_high 1.87 _refine_hist.d_res_low 27.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.022 ? 1281 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.167 1.990 ? 1726 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.997 5.000 ? 147 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44.319 23.833 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.434 15.000 ? 230 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.677 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.189 0.200 ? 182 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 965 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.870 _refine_ls_shell.d_res_low 1.918 _refine_ls_shell.number_reflns_R_work 1087 _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.percent_reflns_obs 98.79 _refine_ls_shell.R_factor_R_free 0.238 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4JV6 _struct.title 'The crystal structure of PDE6D in complex to inhibitor-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JV6 _struct_keywords.pdbx_keywords 'Protein binding/inhibitor' _struct_keywords.text 'Immunoglobulin-like beta-sandwich, GDI-Like solubilizing factor, Prenyl binding protein, Protein binding-inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? GLY A 16 ? SER B 2 GLY B 14 1 ? 13 HELX_P HELX_P2 2 LYS A 54 ? CYS A 58 ? LYS B 52 CYS B 56 5 ? 5 HELX_P HELX_P3 3 PRO A 121 ? THR A 126 ? PRO B 119 THR B 124 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 32 ? GLY A 36 ? ILE B 30 GLY B 34 A 2 PHE A 17 ? ASP A 26 ? PHE B 15 ASP B 24 A 3 ALA A 60 ? SER A 69 ? ALA B 58 SER B 67 A 4 SER A 103 ? GLU A 112 ? SER B 101 GLU B 110 B 1 GLU A 46 ? PRO A 52 ? GLU B 44 PRO B 50 B 2 LEU A 140 ? VAL A 152 ? LEU B 138 VAL B 150 B 3 VAL A 129 ? ASP A 137 ? VAL B 127 ASP B 135 B 4 MET A 73 ? PHE A 84 ? MET B 71 PHE B 82 B 5 GLN A 87 ? VAL A 99 ? GLN B 85 VAL B 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 33 ? O LEU B 31 N LEU A 24 ? N LEU B 22 A 2 3 N TRP A 21 ? N TRP B 19 O ASN A 66 ? O ASN B 64 A 3 4 N VAL A 61 ? N VAL B 59 O ILE A 111 ? O ILE B 109 B 1 2 N HIS A 47 ? N HIS B 45 O ARG A 148 ? O ARG B 146 B 2 3 O VAL A 142 ? O VAL B 140 N PHE A 135 ? N PHE B 133 B 3 4 O PHE A 136 ? O PHE B 134 N ARG A 77 ? N ARG B 75 B 4 5 N PHE A 76 ? N PHE B 74 O PHE A 96 ? O PHE B 94 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B 18F 201 ? 5 'BINDING SITE FOR RESIDUE 18F B 201' AC2 Software B 18F 202 ? 10 'BINDING SITE FOR RESIDUE 18F B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 MET A 22 ? MET B 20 . ? 1_555 ? 2 AC1 5 TRP A 34 ? TRP B 32 . ? 1_555 ? 3 AC1 5 ALA A 49 ? ALA B 47 . ? 1_555 ? 4 AC1 5 ARG A 63 ? ARG B 61 . ? 1_555 ? 5 AC1 5 GLN A 80 ? GLN B 78 . ? 1_555 ? 6 AC2 10 LEU A 24 ? LEU B 22 . ? 1_555 ? 7 AC2 10 ILE A 55 ? ILE B 53 . ? 1_555 ? 8 AC2 10 LEU A 56 ? LEU B 54 . ? 1_555 ? 9 AC2 10 CYS A 58 ? CYS B 56 . ? 1_555 ? 10 AC2 10 GLU A 90 ? GLU B 88 . ? 1_555 ? 11 AC2 10 ILE A 111 ? ILE B 109 . ? 1_555 ? 12 AC2 10 ALA A 113 ? ALA B 111 . ? 1_555 ? 13 AC2 10 MET A 119 ? MET B 117 . ? 1_555 ? 14 AC2 10 LEU A 149 ? LEU B 147 . ? 1_555 ? 15 AC2 10 TYR A 151 ? TYR B 149 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JV6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JV6 _atom_sites.fract_transf_matrix[1][1] 0.018064 _atom_sites.fract_transf_matrix[1][2] 0.010429 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020858 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008654 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? B . n A 1 2 SER 2 0 ? ? ? B . n A 1 3 MET 3 1 ? ? ? B . n A 1 4 SER 4 2 2 SER SER B . n A 1 5 ALA 5 3 3 ALA ALA B . n A 1 6 LYS 6 4 4 LYS LYS B . n A 1 7 ASP 7 5 5 ASP ASP B . n A 1 8 GLU 8 6 6 GLU GLU B . n A 1 9 ARG 9 7 7 ARG ARG B . n A 1 10 ALA 10 8 8 ALA ALA B . n A 1 11 ARG 11 9 9 ARG ARG B . n A 1 12 GLU 12 10 10 GLU GLU B . n A 1 13 ILE 13 11 11 ILE ILE B . n A 1 14 LEU 14 12 12 LEU LEU B . n A 1 15 ARG 15 13 13 ARG ARG B . n A 1 16 GLY 16 14 14 GLY GLY B . n A 1 17 PHE 17 15 15 PHE PHE B . n A 1 18 LYS 18 16 16 LYS LYS B . n A 1 19 LEU 19 17 17 LEU LEU B . n A 1 20 ASN 20 18 18 ASN ASN B . n A 1 21 TRP 21 19 19 TRP TRP B . n A 1 22 MET 22 20 20 MET MET B . n A 1 23 ASN 23 21 21 ASN ASN B . n A 1 24 LEU 24 22 22 LEU LEU B . n A 1 25 ARG 25 23 23 ARG ARG B . n A 1 26 ASP 26 24 24 ASP ASP B . n A 1 27 ALA 27 25 25 ALA ALA B . n A 1 28 GLU 28 26 ? ? ? B . n A 1 29 THR 29 27 27 THR THR B . n A 1 30 GLY 30 28 28 GLY GLY B . n A 1 31 LYS 31 29 29 LYS LYS B . n A 1 32 ILE 32 30 30 ILE ILE B . n A 1 33 LEU 33 31 31 LEU LEU B . n A 1 34 TRP 34 32 32 TRP TRP B . n A 1 35 GLN 35 33 33 GLN GLN B . n A 1 36 GLY 36 34 34 GLY GLY B . n A 1 37 THR 37 35 35 THR THR B . n A 1 38 GLU 38 36 36 GLU GLU B . n A 1 39 ASP 39 37 37 ASP ASP B . n A 1 40 LEU 40 38 38 LEU LEU B . n A 1 41 SER 41 39 39 SER SER B . n A 1 42 VAL 42 40 40 VAL VAL B . n A 1 43 PRO 43 41 41 PRO PRO B . n A 1 44 GLY 44 42 42 GLY GLY B . n A 1 45 VAL 45 43 43 VAL VAL B . n A 1 46 GLU 46 44 44 GLU GLU B . n A 1 47 HIS 47 45 45 HIS HIS B . n A 1 48 GLU 48 46 46 GLU GLU B . n A 1 49 ALA 49 47 47 ALA ALA B . n A 1 50 ARG 50 48 48 ARG ARG B . n A 1 51 VAL 51 49 49 VAL VAL B . n A 1 52 PRO 52 50 50 PRO PRO B . n A 1 53 LYS 53 51 51 LYS LYS B . n A 1 54 LYS 54 52 52 LYS LYS B . n A 1 55 ILE 55 53 53 ILE ILE B . n A 1 56 LEU 56 54 54 LEU LEU B . n A 1 57 LYS 57 55 55 LYS LYS B . n A 1 58 CYS 58 56 56 CYS CYS B . n A 1 59 LYS 59 57 57 LYS LYS B . n A 1 60 ALA 60 58 58 ALA ALA B . n A 1 61 VAL 61 59 59 VAL VAL B . n A 1 62 SER 62 60 60 SER SER B . n A 1 63 ARG 63 61 61 ARG ARG B . n A 1 64 GLU 64 62 62 GLU GLU B . n A 1 65 LEU 65 63 63 LEU LEU B . n A 1 66 ASN 66 64 64 ASN ASN B . n A 1 67 PHE 67 65 65 PHE PHE B . n A 1 68 SER 68 66 66 SER SER B . n A 1 69 SER 69 67 67 SER SER B . n A 1 70 THR 70 68 68 THR THR B . n A 1 71 GLU 71 69 69 GLU GLU B . n A 1 72 GLN 72 70 70 GLN GLN B . n A 1 73 MET 73 71 71 MET MET B . n A 1 74 GLU 74 72 72 GLU GLU B . n A 1 75 LYS 75 73 73 LYS LYS B . n A 1 76 PHE 76 74 74 PHE PHE B . n A 1 77 ARG 77 75 75 ARG ARG B . n A 1 78 LEU 78 76 76 LEU LEU B . n A 1 79 GLU 79 77 77 GLU GLU B . n A 1 80 GLN 80 78 78 GLN GLN B . n A 1 81 LYS 81 79 79 LYS LYS B . n A 1 82 VAL 82 80 80 VAL VAL B . n A 1 83 TYR 83 81 81 TYR TYR B . n A 1 84 PHE 84 82 82 PHE PHE B . n A 1 85 LYS 85 83 83 LYS LYS B . n A 1 86 GLY 86 84 84 GLY GLY B . n A 1 87 GLN 87 85 85 GLN GLN B . n A 1 88 CYS 88 86 86 CYS CYS B . n A 1 89 LEU 89 87 87 LEU LEU B . n A 1 90 GLU 90 88 88 GLU GLU B . n A 1 91 GLU 91 89 89 GLU GLU B . n A 1 92 TRP 92 90 90 TRP TRP B . n A 1 93 PHE 93 91 91 PHE PHE B . n A 1 94 PHE 94 92 92 PHE PHE B . n A 1 95 GLU 95 93 93 GLU GLU B . n A 1 96 PHE 96 94 94 PHE PHE B . n A 1 97 GLY 97 95 95 GLY GLY B . n A 1 98 PHE 98 96 96 PHE PHE B . n A 1 99 VAL 99 97 97 VAL VAL B . n A 1 100 ILE 100 98 98 ILE ILE B . n A 1 101 PRO 101 99 99 PRO PRO B . n A 1 102 ASN 102 100 100 ASN ASN B . n A 1 103 SER 103 101 101 SER SER B . n A 1 104 THR 104 102 102 THR THR B . n A 1 105 ASN 105 103 103 ASN ASN B . n A 1 106 THR 106 104 104 THR THR B . n A 1 107 TRP 107 105 105 TRP TRP B . n A 1 108 GLN 108 106 106 GLN GLN B . n A 1 109 SER 109 107 107 SER SER B . n A 1 110 LEU 110 108 108 LEU LEU B . n A 1 111 ILE 111 109 109 ILE ILE B . n A 1 112 GLU 112 110 110 GLU GLU B . n A 1 113 ALA 113 111 111 ALA ALA B . n A 1 114 ALA 114 112 112 ALA ALA B . n A 1 115 PRO 115 113 ? ? ? B . n A 1 116 GLU 116 114 ? ? ? B . n A 1 117 SER 117 115 115 SER SER B . n A 1 118 GLN 118 116 116 GLN GLN B . n A 1 119 MET 119 117 117 MET MET B . n A 1 120 MET 120 118 118 MET MET B . n A 1 121 PRO 121 119 119 PRO PRO B . n A 1 122 ALA 122 120 120 ALA ALA B . n A 1 123 SER 123 121 121 SER SER B . n A 1 124 VAL 124 122 122 VAL VAL B . n A 1 125 LEU 125 123 123 LEU LEU B . n A 1 126 THR 126 124 124 THR THR B . n A 1 127 GLY 127 125 125 GLY GLY B . n A 1 128 ASN 128 126 126 ASN ASN B . n A 1 129 VAL 129 127 127 VAL VAL B . n A 1 130 ILE 130 128 128 ILE ILE B . n A 1 131 ILE 131 129 129 ILE ILE B . n A 1 132 GLU 132 130 130 GLU GLU B . n A 1 133 THR 133 131 131 THR THR B . n A 1 134 LYS 134 132 132 LYS LYS B . n A 1 135 PHE 135 133 133 PHE PHE B . n A 1 136 PHE 136 134 134 PHE PHE B . n A 1 137 ASP 137 135 135 ASP ASP B . n A 1 138 ASP 138 136 136 ASP ASP B . n A 1 139 ASP 139 137 137 ASP ASP B . n A 1 140 LEU 140 138 138 LEU LEU B . n A 1 141 LEU 141 139 139 LEU LEU B . n A 1 142 VAL 142 140 140 VAL VAL B . n A 1 143 SER 143 141 141 SER SER B . n A 1 144 THR 144 142 142 THR THR B . n A 1 145 SER 145 143 143 SER SER B . n A 1 146 ARG 146 144 144 ARG ARG B . n A 1 147 VAL 147 145 145 VAL VAL B . n A 1 148 ARG 148 146 146 ARG ARG B . n A 1 149 LEU 149 147 147 LEU LEU B . n A 1 150 PHE 150 148 148 PHE PHE B . n A 1 151 TYR 151 149 149 TYR TYR B . n A 1 152 VAL 152 150 150 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 18F 1 201 1 18F 18F B . C 2 18F 1 202 1 18F 18F B . D 3 HOH 1 301 301 HOH HOH B . D 3 HOH 2 302 302 HOH HOH B . D 3 HOH 3 303 303 HOH HOH B . D 3 HOH 4 304 304 HOH HOH B . D 3 HOH 5 305 305 HOH HOH B . D 3 HOH 6 306 306 HOH HOH B . D 3 HOH 7 307 307 HOH HOH B . D 3 HOH 8 308 308 HOH HOH B . D 3 HOH 9 309 309 HOH HOH B . D 3 HOH 10 310 310 HOH HOH B . D 3 HOH 11 311 311 HOH HOH B . D 3 HOH 12 312 312 HOH HOH B . D 3 HOH 13 313 313 HOH HOH B . D 3 HOH 14 314 314 HOH HOH B . D 3 HOH 15 315 315 HOH HOH B . D 3 HOH 16 316 316 HOH HOH B . D 3 HOH 17 317 317 HOH HOH B . D 3 HOH 18 318 318 HOH HOH B . D 3 HOH 19 319 319 HOH HOH B . D 3 HOH 20 320 320 HOH HOH B . D 3 HOH 21 321 321 HOH HOH B . D 3 HOH 22 322 322 HOH HOH B . D 3 HOH 23 323 323 HOH HOH B . D 3 HOH 24 324 324 HOH HOH B . D 3 HOH 25 325 325 HOH HOH B . D 3 HOH 26 326 326 HOH HOH B . D 3 HOH 27 327 327 HOH HOH B . D 3 HOH 28 328 328 HOH HOH B . D 3 HOH 29 329 329 HOH HOH B . D 3 HOH 30 330 330 HOH HOH B . D 3 HOH 31 331 331 HOH HOH B . D 3 HOH 32 332 332 HOH HOH B . D 3 HOH 33 333 333 HOH HOH B . D 3 HOH 34 334 334 HOH HOH B . D 3 HOH 35 335 335 HOH HOH B . D 3 HOH 36 336 336 HOH HOH B . D 3 HOH 37 337 337 HOH HOH B . D 3 HOH 38 338 338 HOH HOH B . D 3 HOH 39 339 339 HOH HOH B . D 3 HOH 40 340 340 HOH HOH B . D 3 HOH 41 341 341 HOH HOH B . D 3 HOH 42 342 342 HOH HOH B . D 3 HOH 43 343 343 HOH HOH B . D 3 HOH 44 344 344 HOH HOH B . D 3 HOH 45 345 345 HOH HOH B . D 3 HOH 46 346 346 HOH HOH B . D 3 HOH 47 347 347 HOH HOH B . D 3 HOH 48 348 348 HOH HOH B . D 3 HOH 49 349 349 HOH HOH B . D 3 HOH 50 350 350 HOH HOH B . D 3 HOH 51 351 351 HOH HOH B . D 3 HOH 52 352 352 HOH HOH B . D 3 HOH 53 353 353 HOH HOH B . D 3 HOH 54 354 354 HOH HOH B . D 3 HOH 55 355 355 HOH HOH B . D 3 HOH 56 356 356 HOH HOH B . D 3 HOH 57 357 357 HOH HOH B . D 3 HOH 58 358 358 HOH HOH B . D 3 HOH 59 359 359 HOH HOH B . D 3 HOH 60 360 360 HOH HOH B . D 3 HOH 61 361 361 HOH HOH B . D 3 HOH 62 362 362 HOH HOH B . D 3 HOH 63 363 363 HOH HOH B . D 3 HOH 64 364 364 HOH HOH B . D 3 HOH 65 365 365 HOH HOH B . D 3 HOH 66 366 366 HOH HOH B . D 3 HOH 67 367 367 HOH HOH B . D 3 HOH 68 368 368 HOH HOH B . D 3 HOH 69 369 369 HOH HOH B . D 3 HOH 70 370 370 HOH HOH B . D 3 HOH 71 371 371 HOH HOH B . D 3 HOH 72 372 372 HOH HOH B . D 3 HOH 73 373 373 HOH HOH B . D 3 HOH 74 374 374 HOH HOH B . D 3 HOH 75 375 375 HOH HOH B . D 3 HOH 76 376 376 HOH HOH B . D 3 HOH 77 377 377 HOH HOH B . D 3 HOH 78 378 378 HOH HOH B . D 3 HOH 79 379 379 HOH HOH B . D 3 HOH 80 380 380 HOH HOH B . D 3 HOH 81 381 381 HOH HOH B . D 3 HOH 82 382 382 HOH HOH B . D 3 HOH 83 383 383 HOH HOH B . D 3 HOH 84 384 384 HOH HOH B . D 3 HOH 85 385 385 HOH HOH B . D 3 HOH 86 386 386 HOH HOH B . D 3 HOH 87 387 387 HOH HOH B . D 3 HOH 88 388 388 HOH HOH B . D 3 HOH 89 389 389 HOH HOH B . D 3 HOH 90 390 390 HOH HOH B . D 3 HOH 91 391 391 HOH HOH B . D 3 HOH 92 392 392 HOH HOH B . D 3 HOH 93 393 393 HOH HOH B . D 3 HOH 94 394 394 HOH HOH B . D 3 HOH 95 395 395 HOH HOH B . D 3 HOH 96 396 396 HOH HOH B . D 3 HOH 97 397 397 HOH HOH B . D 3 HOH 98 398 398 HOH HOH B . D 3 HOH 99 399 399 HOH HOH B . D 3 HOH 100 400 400 HOH HOH B . D 3 HOH 101 401 401 HOH HOH B . D 3 HOH 102 402 402 HOH HOH B . D 3 HOH 103 403 403 HOH HOH B . D 3 HOH 104 404 404 HOH HOH B . D 3 HOH 105 405 405 HOH HOH B . D 3 HOH 106 406 406 HOH HOH B . D 3 HOH 107 407 407 HOH HOH B . D 3 HOH 108 408 408 HOH HOH B . D 3 HOH 109 409 409 HOH HOH B . D 3 HOH 110 410 410 HOH HOH B . D 3 HOH 111 411 411 HOH HOH B . D 3 HOH 112 412 412 HOH HOH B . D 3 HOH 113 413 413 HOH HOH B . D 3 HOH 114 414 414 HOH HOH B . D 3 HOH 115 415 415 HOH HOH B . D 3 HOH 116 416 416 HOH HOH B . D 3 HOH 117 417 417 HOH HOH B . D 3 HOH 118 418 418 HOH HOH B . D 3 HOH 119 419 419 HOH HOH B . D 3 HOH 120 420 420 HOH HOH B . D 3 HOH 121 421 421 HOH HOH B . D 3 HOH 122 422 422 HOH HOH B . D 3 HOH 123 423 423 HOH HOH B . D 3 HOH 124 424 424 HOH HOH B . D 3 HOH 125 425 425 HOH HOH B . D 3 HOH 126 426 426 HOH HOH B . D 3 HOH 127 427 427 HOH HOH B . D 3 HOH 128 428 428 HOH HOH B . D 3 HOH 129 429 429 HOH HOH B . D 3 HOH 130 430 430 HOH HOH B . D 3 HOH 131 431 431 HOH HOH B . D 3 HOH 132 432 432 HOH HOH B . D 3 HOH 133 433 433 HOH HOH B . D 3 HOH 134 434 434 HOH HOH B . D 3 HOH 135 435 435 HOH HOH B . D 3 HOH 136 436 436 HOH HOH B . D 3 HOH 137 437 437 HOH HOH B . D 3 HOH 138 438 438 HOH HOH B . D 3 HOH 139 439 439 HOH HOH B . D 3 HOH 140 440 440 HOH HOH B . D 3 HOH 141 441 441 HOH HOH B . D 3 HOH 142 442 442 HOH HOH B . D 3 HOH 143 443 443 HOH HOH B . D 3 HOH 144 444 444 HOH HOH B . D 3 HOH 145 445 445 HOH HOH B . D 3 HOH 146 446 446 HOH HOH B . D 3 HOH 147 447 447 HOH HOH B . D 3 HOH 148 448 448 HOH HOH B . D 3 HOH 149 449 449 HOH HOH B . D 3 HOH 150 450 450 HOH HOH B . D 3 HOH 151 451 452 HOH HOH B . D 3 HOH 152 452 453 HOH HOH B . D 3 HOH 153 453 454 HOH HOH B . D 3 HOH 154 454 455 HOH HOH B . D 3 HOH 155 455 456 HOH HOH B . D 3 HOH 156 456 457 HOH HOH B . D 3 HOH 157 457 458 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 311 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2013-06-05 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PRO 'data collection' DC ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.6.0093 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 370 ? ? O B HOH 422 ? ? 2.11 2 1 CD2 B PHE 133 ? B O B HOH 457 ? ? 2.15 3 1 O B HOH 339 ? ? O B HOH 413 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 316 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 445 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_545 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG B GLU 10 ? ? CD B GLU 10 ? ? 1.625 1.515 0.110 0.015 N 2 1 CD B GLU 10 ? ? OE2 B GLU 10 ? ? 1.345 1.252 0.093 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB B ASN 21 ? ? CA B ASN 21 ? ? C B ASN 21 ? ? 97.56 110.40 -12.84 2.00 N 2 1 NE B ARG 146 ? ? CZ B ARG 146 ? ? NH1 B ARG 146 ? ? 124.04 120.30 3.74 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 136 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 53.68 _pdbx_validate_torsion.psi -112.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY -1 ? A GLY 1 2 1 Y 1 B SER 0 ? A SER 2 3 1 Y 1 B MET 1 ? A MET 3 4 1 Y 1 B GLU 26 ? A GLU 28 5 1 Y 1 B PRO 113 ? A PRO 115 6 1 Y 1 B GLU 114 ? A GLU 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 18F CAR C Y N 1 18F CAS C Y N 2 18F CAT C Y N 3 18F CAU C Y N 4 18F CAV C Y N 5 18F CAQ C Y N 6 18F CAP C N N 7 18F NAE N Y N 8 18F CAD C Y N 9 18F CAI C Y N 10 18F CAH C Y N 11 18F CAG C Y N 12 18F CAF C Y N 13 18F CAC C Y N 14 18F NAB N Y N 15 18F CAA C Y N 16 18F CAJ C Y N 17 18F CAK C Y N 18 18F CAL C Y N 19 18F CAM C Y N 20 18F CAN C Y N 21 18F CAO C Y N 22 18F H1 H N N 23 18F H2 H N N 24 18F H3 H N N 25 18F H4 H N N 26 18F H5 H N N 27 18F H6 H N N 28 18F H7 H N N 29 18F H8 H N N 30 18F H9 H N N 31 18F H10 H N N 32 18F H11 H N N 33 18F H12 H N N 34 18F H13 H N N 35 18F H14 H N N 36 18F H15 H N N 37 18F H16 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 THR N N N N 342 THR CA C N S 343 THR C C N N 344 THR O O N N 345 THR CB C N R 346 THR OG1 O N N 347 THR CG2 C N N 348 THR OXT O N N 349 THR H H N N 350 THR H2 H N N 351 THR HA H N N 352 THR HB H N N 353 THR HG1 H N N 354 THR HG21 H N N 355 THR HG22 H N N 356 THR HG23 H N N 357 THR HXT H N N 358 TRP N N N N 359 TRP CA C N S 360 TRP C C N N 361 TRP O O N N 362 TRP CB C N N 363 TRP CG C Y N 364 TRP CD1 C Y N 365 TRP CD2 C Y N 366 TRP NE1 N Y N 367 TRP CE2 C Y N 368 TRP CE3 C Y N 369 TRP CZ2 C Y N 370 TRP CZ3 C Y N 371 TRP CH2 C Y N 372 TRP OXT O N N 373 TRP H H N N 374 TRP H2 H N N 375 TRP HA H N N 376 TRP HB2 H N N 377 TRP HB3 H N N 378 TRP HD1 H N N 379 TRP HE1 H N N 380 TRP HE3 H N N 381 TRP HZ2 H N N 382 TRP HZ3 H N N 383 TRP HH2 H N N 384 TRP HXT H N N 385 TYR N N N N 386 TYR CA C N S 387 TYR C C N N 388 TYR O O N N 389 TYR CB C N N 390 TYR CG C Y N 391 TYR CD1 C Y N 392 TYR CD2 C Y N 393 TYR CE1 C Y N 394 TYR CE2 C Y N 395 TYR CZ C Y N 396 TYR OH O N N 397 TYR OXT O N N 398 TYR H H N N 399 TYR H2 H N N 400 TYR HA H N N 401 TYR HB2 H N N 402 TYR HB3 H N N 403 TYR HD1 H N N 404 TYR HD2 H N N 405 TYR HE1 H N N 406 TYR HE2 H N N 407 TYR HH H N N 408 TYR HXT H N N 409 VAL N N N N 410 VAL CA C N S 411 VAL C C N N 412 VAL O O N N 413 VAL CB C N N 414 VAL CG1 C N N 415 VAL CG2 C N N 416 VAL OXT O N N 417 VAL H H N N 418 VAL H2 H N N 419 VAL HA H N N 420 VAL HB H N N 421 VAL HG11 H N N 422 VAL HG12 H N N 423 VAL HG13 H N N 424 VAL HG21 H N N 425 VAL HG22 H N N 426 VAL HG23 H N N 427 VAL HXT H N N 428 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 18F CAF CAG doub Y N 1 18F CAF CAC sing Y N 2 18F CAG CAH sing Y N 3 18F NAB CAC sing Y N 4 18F NAB CAA doub Y N 5 18F CAC CAD doub Y N 6 18F CAK CAL doub Y N 7 18F CAK CAJ sing Y N 8 18F CAL CAM sing Y N 9 18F CAH CAI doub Y N 10 18F CAA CAJ sing N N 11 18F CAA NAE sing Y N 12 18F CAJ CAO doub Y N 13 18F CAD CAI sing Y N 14 18F CAD NAE sing Y N 15 18F CAM CAN doub Y N 16 18F NAE CAP sing N N 17 18F CAO CAN sing Y N 18 18F CAP CAQ sing N N 19 18F CAV CAU doub Y N 20 18F CAV CAQ sing Y N 21 18F CAU CAT sing Y N 22 18F CAQ CAR doub Y N 23 18F CAT CAS doub Y N 24 18F CAR CAS sing Y N 25 18F CAR H1 sing N N 26 18F CAS H2 sing N N 27 18F CAT H3 sing N N 28 18F CAU H4 sing N N 29 18F CAV H5 sing N N 30 18F CAP H6 sing N N 31 18F CAP H7 sing N N 32 18F CAI H8 sing N N 33 18F CAH H9 sing N N 34 18F CAG H10 sing N N 35 18F CAF H11 sing N N 36 18F CAK H12 sing N N 37 18F CAL H13 sing N N 38 18F CAM H14 sing N N 39 18F CAN H15 sing N N 40 18F CAO H16 sing N N 41 ALA N CA sing N N 42 ALA N H sing N N 43 ALA N H2 sing N N 44 ALA CA C sing N N 45 ALA CA CB sing N N 46 ALA CA HA sing N N 47 ALA C O doub N N 48 ALA C OXT sing N N 49 ALA CB HB1 sing N N 50 ALA CB HB2 sing N N 51 ALA CB HB3 sing N N 52 ALA OXT HXT sing N N 53 ARG N CA sing N N 54 ARG N H sing N N 55 ARG N H2 sing N N 56 ARG CA C sing N N 57 ARG CA CB sing N N 58 ARG CA HA sing N N 59 ARG C O doub N N 60 ARG C OXT sing N N 61 ARG CB CG sing N N 62 ARG CB HB2 sing N N 63 ARG CB HB3 sing N N 64 ARG CG CD sing N N 65 ARG CG HG2 sing N N 66 ARG CG HG3 sing N N 67 ARG CD NE sing N N 68 ARG CD HD2 sing N N 69 ARG CD HD3 sing N N 70 ARG NE CZ sing N N 71 ARG NE HE sing N N 72 ARG CZ NH1 sing N N 73 ARG CZ NH2 doub N N 74 ARG NH1 HH11 sing N N 75 ARG NH1 HH12 sing N N 76 ARG NH2 HH21 sing N N 77 ARG NH2 HH22 sing N N 78 ARG OXT HXT sing N N 79 ASN N CA sing N N 80 ASN N H sing N N 81 ASN N H2 sing N N 82 ASN CA C sing N N 83 ASN CA CB sing N N 84 ASN CA HA sing N N 85 ASN C O doub N N 86 ASN C OXT sing N N 87 ASN CB CG sing N N 88 ASN CB HB2 sing N N 89 ASN CB HB3 sing N N 90 ASN CG OD1 doub N N 91 ASN CG ND2 sing N N 92 ASN ND2 HD21 sing N N 93 ASN ND2 HD22 sing N N 94 ASN OXT HXT sing N N 95 ASP N CA sing N N 96 ASP N H sing N N 97 ASP N H2 sing N N 98 ASP CA C sing N N 99 ASP CA CB sing N N 100 ASP CA HA sing N N 101 ASP C O doub N N 102 ASP C OXT sing N N 103 ASP CB CG sing N N 104 ASP CB HB2 sing N N 105 ASP CB HB3 sing N N 106 ASP CG OD1 doub N N 107 ASP CG OD2 sing N N 108 ASP OD2 HD2 sing N N 109 ASP OXT HXT sing N N 110 CYS N CA sing N N 111 CYS N H sing N N 112 CYS N H2 sing N N 113 CYS CA C sing N N 114 CYS CA CB sing N N 115 CYS CA HA sing N N 116 CYS C O doub N N 117 CYS C OXT sing N N 118 CYS CB SG sing N N 119 CYS CB HB2 sing N N 120 CYS CB HB3 sing N N 121 CYS SG HG sing N N 122 CYS OXT HXT sing N N 123 GLN N CA sing N N 124 GLN N H sing N N 125 GLN N H2 sing N N 126 GLN CA C sing N N 127 GLN CA CB sing N N 128 GLN CA HA sing N N 129 GLN C O doub N N 130 GLN C OXT sing N N 131 GLN CB CG sing N N 132 GLN CB HB2 sing N N 133 GLN CB HB3 sing N N 134 GLN CG CD sing N N 135 GLN CG HG2 sing N N 136 GLN CG HG3 sing N N 137 GLN CD OE1 doub N N 138 GLN CD NE2 sing N N 139 GLN NE2 HE21 sing N N 140 GLN NE2 HE22 sing N N 141 GLN OXT HXT sing N N 142 GLU N CA sing N N 143 GLU N H sing N N 144 GLU N H2 sing N N 145 GLU CA C sing N N 146 GLU CA CB sing N N 147 GLU CA HA sing N N 148 GLU C O doub N N 149 GLU C OXT sing N N 150 GLU CB CG sing N N 151 GLU CB HB2 sing N N 152 GLU CB HB3 sing N N 153 GLU CG CD sing N N 154 GLU CG HG2 sing N N 155 GLU CG HG3 sing N N 156 GLU CD OE1 doub N N 157 GLU CD OE2 sing N N 158 GLU OE2 HE2 sing N N 159 GLU OXT HXT sing N N 160 GLY N CA sing N N 161 GLY N H sing N N 162 GLY N H2 sing N N 163 GLY CA C sing N N 164 GLY CA HA2 sing N N 165 GLY CA HA3 sing N N 166 GLY C O doub N N 167 GLY C OXT sing N N 168 GLY OXT HXT sing N N 169 HIS N CA sing N N 170 HIS N H sing N N 171 HIS N H2 sing N N 172 HIS CA C sing N N 173 HIS CA CB sing N N 174 HIS CA HA sing N N 175 HIS C O doub N N 176 HIS C OXT sing N N 177 HIS CB CG sing N N 178 HIS CB HB2 sing N N 179 HIS CB HB3 sing N N 180 HIS CG ND1 sing Y N 181 HIS CG CD2 doub Y N 182 HIS ND1 CE1 doub Y N 183 HIS ND1 HD1 sing N N 184 HIS CD2 NE2 sing Y N 185 HIS CD2 HD2 sing N N 186 HIS CE1 NE2 sing Y N 187 HIS CE1 HE1 sing N N 188 HIS NE2 HE2 sing N N 189 HIS OXT HXT sing N N 190 HOH O H1 sing N N 191 HOH O H2 sing N N 192 ILE N CA sing N N 193 ILE N H sing N N 194 ILE N H2 sing N N 195 ILE CA C sing N N 196 ILE CA CB sing N N 197 ILE CA HA sing N N 198 ILE C O doub N N 199 ILE C OXT sing N N 200 ILE CB CG1 sing N N 201 ILE CB CG2 sing N N 202 ILE CB HB sing N N 203 ILE CG1 CD1 sing N N 204 ILE CG1 HG12 sing N N 205 ILE CG1 HG13 sing N N 206 ILE CG2 HG21 sing N N 207 ILE CG2 HG22 sing N N 208 ILE CG2 HG23 sing N N 209 ILE CD1 HD11 sing N N 210 ILE CD1 HD12 sing N N 211 ILE CD1 HD13 sing N N 212 ILE OXT HXT sing N N 213 LEU N CA sing N N 214 LEU N H sing N N 215 LEU N H2 sing N N 216 LEU CA C sing N N 217 LEU CA CB sing N N 218 LEU CA HA sing N N 219 LEU C O doub N N 220 LEU C OXT sing N N 221 LEU CB CG sing N N 222 LEU CB HB2 sing N N 223 LEU CB HB3 sing N N 224 LEU CG CD1 sing N N 225 LEU CG CD2 sing N N 226 LEU CG HG sing N N 227 LEU CD1 HD11 sing N N 228 LEU CD1 HD12 sing N N 229 LEU CD1 HD13 sing N N 230 LEU CD2 HD21 sing N N 231 LEU CD2 HD22 sing N N 232 LEU CD2 HD23 sing N N 233 LEU OXT HXT sing N N 234 LYS N CA sing N N 235 LYS N H sing N N 236 LYS N H2 sing N N 237 LYS CA C sing N N 238 LYS CA CB sing N N 239 LYS CA HA sing N N 240 LYS C O doub N N 241 LYS C OXT sing N N 242 LYS CB CG sing N N 243 LYS CB HB2 sing N N 244 LYS CB HB3 sing N N 245 LYS CG CD sing N N 246 LYS CG HG2 sing N N 247 LYS CG HG3 sing N N 248 LYS CD CE sing N N 249 LYS CD HD2 sing N N 250 LYS CD HD3 sing N N 251 LYS CE NZ sing N N 252 LYS CE HE2 sing N N 253 LYS CE HE3 sing N N 254 LYS NZ HZ1 sing N N 255 LYS NZ HZ2 sing N N 256 LYS NZ HZ3 sing N N 257 LYS OXT HXT sing N N 258 MET N CA sing N N 259 MET N H sing N N 260 MET N H2 sing N N 261 MET CA C sing N N 262 MET CA CB sing N N 263 MET CA HA sing N N 264 MET C O doub N N 265 MET C OXT sing N N 266 MET CB CG sing N N 267 MET CB HB2 sing N N 268 MET CB HB3 sing N N 269 MET CG SD sing N N 270 MET CG HG2 sing N N 271 MET CG HG3 sing N N 272 MET SD CE sing N N 273 MET CE HE1 sing N N 274 MET CE HE2 sing N N 275 MET CE HE3 sing N N 276 MET OXT HXT sing N N 277 PHE N CA sing N N 278 PHE N H sing N N 279 PHE N H2 sing N N 280 PHE CA C sing N N 281 PHE CA CB sing N N 282 PHE CA HA sing N N 283 PHE C O doub N N 284 PHE C OXT sing N N 285 PHE CB CG sing N N 286 PHE CB HB2 sing N N 287 PHE CB HB3 sing N N 288 PHE CG CD1 doub Y N 289 PHE CG CD2 sing Y N 290 PHE CD1 CE1 sing Y N 291 PHE CD1 HD1 sing N N 292 PHE CD2 CE2 doub Y N 293 PHE CD2 HD2 sing N N 294 PHE CE1 CZ doub Y N 295 PHE CE1 HE1 sing N N 296 PHE CE2 CZ sing Y N 297 PHE CE2 HE2 sing N N 298 PHE CZ HZ sing N N 299 PHE OXT HXT sing N N 300 PRO N CA sing N N 301 PRO N CD sing N N 302 PRO N H sing N N 303 PRO CA C sing N N 304 PRO CA CB sing N N 305 PRO CA HA sing N N 306 PRO C O doub N N 307 PRO C OXT sing N N 308 PRO CB CG sing N N 309 PRO CB HB2 sing N N 310 PRO CB HB3 sing N N 311 PRO CG CD sing N N 312 PRO CG HG2 sing N N 313 PRO CG HG3 sing N N 314 PRO CD HD2 sing N N 315 PRO CD HD3 sing N N 316 PRO OXT HXT sing N N 317 SER N CA sing N N 318 SER N H sing N N 319 SER N H2 sing N N 320 SER CA C sing N N 321 SER CA CB sing N N 322 SER CA HA sing N N 323 SER C O doub N N 324 SER C OXT sing N N 325 SER CB OG sing N N 326 SER CB HB2 sing N N 327 SER CB HB3 sing N N 328 SER OG HG sing N N 329 SER OXT HXT sing N N 330 THR N CA sing N N 331 THR N H sing N N 332 THR N H2 sing N N 333 THR CA C sing N N 334 THR CA CB sing N N 335 THR CA HA sing N N 336 THR C O doub N N 337 THR C OXT sing N N 338 THR CB OG1 sing N N 339 THR CB CG2 sing N N 340 THR CB HB sing N N 341 THR OG1 HG1 sing N N 342 THR CG2 HG21 sing N N 343 THR CG2 HG22 sing N N 344 THR CG2 HG23 sing N N 345 THR OXT HXT sing N N 346 TRP N CA sing N N 347 TRP N H sing N N 348 TRP N H2 sing N N 349 TRP CA C sing N N 350 TRP CA CB sing N N 351 TRP CA HA sing N N 352 TRP C O doub N N 353 TRP C OXT sing N N 354 TRP CB CG sing N N 355 TRP CB HB2 sing N N 356 TRP CB HB3 sing N N 357 TRP CG CD1 doub Y N 358 TRP CG CD2 sing Y N 359 TRP CD1 NE1 sing Y N 360 TRP CD1 HD1 sing N N 361 TRP CD2 CE2 doub Y N 362 TRP CD2 CE3 sing Y N 363 TRP NE1 CE2 sing Y N 364 TRP NE1 HE1 sing N N 365 TRP CE2 CZ2 sing Y N 366 TRP CE3 CZ3 doub Y N 367 TRP CE3 HE3 sing N N 368 TRP CZ2 CH2 doub Y N 369 TRP CZ2 HZ2 sing N N 370 TRP CZ3 CH2 sing Y N 371 TRP CZ3 HZ3 sing N N 372 TRP CH2 HH2 sing N N 373 TRP OXT HXT sing N N 374 TYR N CA sing N N 375 TYR N H sing N N 376 TYR N H2 sing N N 377 TYR CA C sing N N 378 TYR CA CB sing N N 379 TYR CA HA sing N N 380 TYR C O doub N N 381 TYR C OXT sing N N 382 TYR CB CG sing N N 383 TYR CB HB2 sing N N 384 TYR CB HB3 sing N N 385 TYR CG CD1 doub Y N 386 TYR CG CD2 sing Y N 387 TYR CD1 CE1 sing Y N 388 TYR CD1 HD1 sing N N 389 TYR CD2 CE2 doub Y N 390 TYR CD2 HD2 sing N N 391 TYR CE1 CZ doub Y N 392 TYR CE1 HE1 sing N N 393 TYR CE2 CZ sing Y N 394 TYR CE2 HE2 sing N N 395 TYR CZ OH sing N N 396 TYR OH HH sing N N 397 TYR OXT HXT sing N N 398 VAL N CA sing N N 399 VAL N H sing N N 400 VAL N H2 sing N N 401 VAL CA C sing N N 402 VAL CA CB sing N N 403 VAL CA HA sing N N 404 VAL C O doub N N 405 VAL C OXT sing N N 406 VAL CB CG1 sing N N 407 VAL CB CG2 sing N N 408 VAL CB HB sing N N 409 VAL CG1 HG11 sing N N 410 VAL CG1 HG12 sing N N 411 VAL CG1 HG13 sing N N 412 VAL CG2 HG21 sing N N 413 VAL CG2 HG22 sing N N 414 VAL CG2 HG23 sing N N 415 VAL OXT HXT sing N N 416 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1-benzyl-2-phenyl-1H-benzimidazole 18F 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3T5G _pdbx_initial_refinement_model.details ? #