data_4JZR # _entry.id 4JZR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JZR RCSB RCSB078709 WWPDB D_1000078709 # _pdbx_database_status.entry_id 4JZR _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-04-03 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ma, Y.' 1 'Yang, L.' 2 # _citation.id primary _citation.title ;Novel complex crystal structure of prolyl hydroxylase domain-containing protein 2 (PHD2): 2,8-Diazaspiro[4.5]decan-1-ones as potent, orally bioavailable PHD2 inhibitors ; _citation.journal_abbrev Bioorg.Med.Chem. _citation.journal_volume 21 _citation.page_first 6349 _citation.page_last 6358 _citation.year 2013 _citation.journal_id_ASTM BMECEP _citation.country UK _citation.journal_id_ISSN 0968-0896 _citation.journal_id_CSD 1200 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24055079 _citation.pdbx_database_id_DOI 10.1016/j.bmc.2013.08.046 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Deng, G.' 1 primary 'Zhao, B.' 2 primary 'Ma, Y.' 3 primary 'Xu, Q.' 4 primary 'Wang, H.' 5 primary 'Yang, L.' 6 primary 'Zhang, Q.' 7 primary 'Guo, T.B.' 8 primary 'Zhang, W.' 9 primary 'Jiao, Y.' 10 primary 'Cai, X.' 11 primary 'Zhang, J.' 12 primary 'Liu, H.' 13 primary 'Guan, X.' 14 primary 'Lu, H.' 15 primary 'Xiang, J.' 16 primary 'Elliott, J.D.' 17 primary 'Lin, X.' 18 primary 'Ren, F.' 19 # _cell.length_a 111.455 _cell.length_b 111.455 _cell.length_c 39.974 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4JZR _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63' _symmetry.entry_id 4JZR _symmetry.Int_Tables_number 173 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Egl nine homolog 1' 24230.512 1 1.14.11.29 ? 'UNP residues 189-399' ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn '2-(biphenyl-4-yl)-8-[(1-methyl-1H-imidazol-2-yl)methyl]-2,8-diazaspiro[4.5]decan-1-one' 400.516 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 49 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Hypoxia-inducible factor prolyl hydroxylase 2, HIF-PH2, HIF-prolyl hydroxylase 2, HPH-2, Prolyl hydroxylase domain-containing protein 2, PHD2, SM-20 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSFTMPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKE PGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGIL RIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDADERARA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSFTMPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKE PGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGIL RIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDADERARA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PHE n 1 4 THR n 1 5 MET n 1 6 PRO n 1 7 ALA n 1 8 LEU n 1 9 LYS n 1 10 LEU n 1 11 ALA n 1 12 LEU n 1 13 GLU n 1 14 TYR n 1 15 ILE n 1 16 VAL n 1 17 PRO n 1 18 CYS n 1 19 MET n 1 20 ASN n 1 21 LYS n 1 22 HIS n 1 23 GLY n 1 24 ILE n 1 25 CYS n 1 26 VAL n 1 27 VAL n 1 28 ASP n 1 29 ASP n 1 30 PHE n 1 31 LEU n 1 32 GLY n 1 33 LYS n 1 34 GLU n 1 35 THR n 1 36 GLY n 1 37 GLN n 1 38 GLN n 1 39 ILE n 1 40 GLY n 1 41 ASP n 1 42 GLU n 1 43 VAL n 1 44 ARG n 1 45 ALA n 1 46 LEU n 1 47 HIS n 1 48 ASP n 1 49 THR n 1 50 GLY n 1 51 LYS n 1 52 PHE n 1 53 THR n 1 54 ASP n 1 55 GLY n 1 56 GLN n 1 57 LEU n 1 58 VAL n 1 59 SER n 1 60 GLN n 1 61 LYS n 1 62 SER n 1 63 ASP n 1 64 SER n 1 65 SER n 1 66 LYS n 1 67 ASP n 1 68 ILE n 1 69 ARG n 1 70 GLY n 1 71 ASP n 1 72 LYS n 1 73 ILE n 1 74 THR n 1 75 TRP n 1 76 ILE n 1 77 GLU n 1 78 GLY n 1 79 LYS n 1 80 GLU n 1 81 PRO n 1 82 GLY n 1 83 CYS n 1 84 GLU n 1 85 THR n 1 86 ILE n 1 87 GLY n 1 88 LEU n 1 89 LEU n 1 90 MET n 1 91 SER n 1 92 SER n 1 93 MET n 1 94 ASP n 1 95 ASP n 1 96 LEU n 1 97 ILE n 1 98 ARG n 1 99 HIS n 1 100 CYS n 1 101 ASN n 1 102 GLY n 1 103 LYS n 1 104 LEU n 1 105 GLY n 1 106 SER n 1 107 TYR n 1 108 LYS n 1 109 ILE n 1 110 ASN n 1 111 GLY n 1 112 ARG n 1 113 THR n 1 114 LYS n 1 115 ALA n 1 116 MET n 1 117 VAL n 1 118 ALA n 1 119 CYS n 1 120 TYR n 1 121 PRO n 1 122 GLY n 1 123 ASN n 1 124 GLY n 1 125 THR n 1 126 GLY n 1 127 TYR n 1 128 VAL n 1 129 ARG n 1 130 HIS n 1 131 VAL n 1 132 ASP n 1 133 ASN n 1 134 PRO n 1 135 ASN n 1 136 GLY n 1 137 ASP n 1 138 GLY n 1 139 ARG n 1 140 CYS n 1 141 VAL n 1 142 THR n 1 143 CYS n 1 144 ILE n 1 145 TYR n 1 146 TYR n 1 147 LEU n 1 148 ASN n 1 149 LYS n 1 150 ASP n 1 151 TRP n 1 152 ASP n 1 153 ALA n 1 154 LYS n 1 155 VAL n 1 156 SER n 1 157 GLY n 1 158 GLY n 1 159 ILE n 1 160 LEU n 1 161 ARG n 1 162 ILE n 1 163 PHE n 1 164 PRO n 1 165 GLU n 1 166 GLY n 1 167 LYS n 1 168 ALA n 1 169 GLN n 1 170 PHE n 1 171 ALA n 1 172 ASP n 1 173 ILE n 1 174 GLU n 1 175 PRO n 1 176 LYS n 1 177 PHE n 1 178 ASP n 1 179 ARG n 1 180 LEU n 1 181 LEU n 1 182 PHE n 1 183 PHE n 1 184 TRP n 1 185 SER n 1 186 ASP n 1 187 ARG n 1 188 ARG n 1 189 ASN n 1 190 PRO n 1 191 HIS n 1 192 GLU n 1 193 VAL n 1 194 GLN n 1 195 PRO n 1 196 ALA n 1 197 TYR n 1 198 ALA n 1 199 THR n 1 200 ARG n 1 201 TYR n 1 202 ALA n 1 203 ILE n 1 204 THR n 1 205 VAL n 1 206 TRP n 1 207 TYR n 1 208 PHE n 1 209 ASP n 1 210 ALA n 1 211 ASP n 1 212 GLU n 1 213 ARG n 1 214 ALA n 1 215 ARG n 1 216 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'C1orf12, EGLN1, PNAS-118, PNAS-137' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EGLN1_HUMAN _struct_ref.pdbx_db_accession Q9GZT9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCET IGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPE GKAQFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDADERARA ; _struct_ref.pdbx_align_begin 189 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JZR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 216 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9GZT9 _struct_ref_seq.db_align_beg 189 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 399 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 189 _struct_ref_seq.pdbx_auth_seq_align_end 399 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JZR GLY A 1 ? UNP Q9GZT9 ? ? 'EXPRESSION TAG' 184 1 1 4JZR SER A 2 ? UNP Q9GZT9 ? ? 'EXPRESSION TAG' 185 2 1 4JZR PHE A 3 ? UNP Q9GZT9 ? ? 'EXPRESSION TAG' 186 3 1 4JZR THR A 4 ? UNP Q9GZT9 ? ? 'EXPRESSION TAG' 187 4 1 4JZR MET A 5 ? UNP Q9GZT9 ? ? 'EXPRESSION TAG' 188 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4JR non-polymer . '2-(biphenyl-4-yl)-8-[(1-methyl-1H-imidazol-2-yl)methyl]-2,8-diazaspiro[4.5]decan-1-one' ? 'C25 H28 N4 O' 400.516 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4JZR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.287 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 58.42 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.8 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '30% PEG3350, 200mM Ammonium Sulfate, 100mM Sodium Acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-05-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U # _reflns.entry_id 4JZR _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 50.000 _reflns.number_obs 16844 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 14.000 _reflns.pdbx_chi_squared 2.105 _reflns.pdbx_redundancy 6.800 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all 16844 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.100 2.140 ? ? ? ? 0.558 ? ? 1.508 7.100 ? ? ? 822 ? ? ? ? 100.000 ? ? 1 1 2.140 2.180 ? ? ? ? 0.497 ? ? 1.628 7.100 ? ? ? 830 ? ? ? ? 100.000 ? ? 2 1 2.180 2.220 ? ? ? ? 0.427 ? ? 1.583 7.000 ? ? ? 846 ? ? ? ? 100.000 ? ? 3 1 2.220 2.260 ? ? ? ? 0.423 ? ? 2.634 7.000 ? ? ? 811 ? ? ? ? 100.000 ? ? 4 1 2.260 2.310 ? ? ? ? 0.308 ? ? 1.684 7.100 ? ? ? 838 ? ? ? ? 100.000 ? ? 5 1 2.310 2.370 ? ? ? ? 0.250 ? ? 1.586 7.000 ? ? ? 863 ? ? ? ? 100.000 ? ? 6 1 2.370 2.420 ? ? ? ? 0.218 ? ? 1.637 7.100 ? ? ? 819 ? ? ? ? 100.000 ? ? 7 1 2.420 2.490 ? ? ? ? 0.183 ? ? 1.554 7.000 ? ? ? 854 ? ? ? ? 100.000 ? ? 8 1 2.490 2.560 ? ? ? ? 0.156 ? ? 1.593 7.000 ? ? ? 823 ? ? ? ? 100.000 ? ? 9 1 2.560 2.650 ? ? ? ? 0.138 ? ? 1.607 7.100 ? ? ? 852 ? ? ? ? 100.000 ? ? 10 1 2.650 2.740 ? ? ? ? 0.121 ? ? 1.726 7.000 ? ? ? 823 ? ? ? ? 100.000 ? ? 11 1 2.740 2.850 ? ? ? ? 0.094 ? ? 1.764 7.000 ? ? ? 852 ? ? ? ? 100.000 ? ? 12 1 2.850 2.980 ? ? ? ? 0.085 ? ? 2.172 6.900 ? ? ? 837 ? ? ? ? 100.000 ? ? 13 1 2.980 3.140 ? ? ? ? 0.088 ? ? 2.780 6.800 ? ? ? 843 ? ? ? ? 100.000 ? ? 14 1 3.140 3.330 ? ? ? ? 0.073 ? ? 3.010 6.600 ? ? ? 848 ? ? ? ? 100.000 ? ? 15 1 3.330 3.590 ? ? ? ? 0.063 ? ? 3.183 6.300 ? ? ? 851 ? ? ? ? 100.000 ? ? 16 1 3.590 3.950 ? ? ? ? 0.060 ? ? 3.558 6.200 ? ? ? 847 ? ? ? ? 100.000 ? ? 17 1 3.950 4.520 ? ? ? ? 0.042 ? ? 2.840 6.400 ? ? ? 852 ? ? ? ? 99.900 ? ? 18 1 4.520 5.700 ? ? ? ? 0.034 ? ? 2.202 6.400 ? ? ? 867 ? ? ? ? 99.900 ? ? 19 1 5.700 50.000 ? ? ? ? 0.035 ? ? 2.349 6.200 ? ? ? 866 ? ? ? ? 96.300 ? ? 20 1 # _refine.entry_id 4JZR _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 50.00 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6000 _refine.ls_number_reflns_obs 16805 _refine.ls_number_reflns_all 16805 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2320 _refine.ls_R_factor_R_work 0.2306 _refine.ls_wR_factor_R_work 0.2255 _refine.ls_R_factor_R_free 0.2594 _refine.ls_wR_factor_R_free 0.2580 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 851 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.5410 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.1800 _refine.aniso_B[2][2] -0.1800 _refine.aniso_B[3][3] 0.2800 _refine.aniso_B[1][2] -0.0900 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9350 _refine.correlation_coeff_Fo_to_Fc_free 0.9280 _refine.overall_SU_R_Cruickshank_DPI 0.2091 _refine.overall_SU_R_free 0.1794 _refine.pdbx_overall_ESU_R 0.2090 _refine.pdbx_overall_ESU_R_Free 0.1790 _refine.overall_SU_ML 0.1290 _refine.overall_SU_B 4.8980 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7998 _refine.B_iso_max 69.740 _refine.B_iso_min 17.140 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1579 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 1663 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1661 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1129 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2254 1.388 1.963 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2691 0.900 3.003 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 204 6.247 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 78 30.821 23.590 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 254 14.573 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12 17.489 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 235 0.079 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1875 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 349 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1010 0.665 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 423 0.060 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1615 1.276 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 651 1.281 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 638 2.230 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.1530 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.5900 _refine_ls_shell.number_reflns_R_work 1162 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3040 _refine_ls_shell.R_factor_R_free 0.4250 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1225 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4JZR _struct.title 'Structure of Prolyl Hydroxylase Domain-containing Protein (PHD) with Inhibitors' _struct.pdbx_descriptor 'Egl nine homolog 1 (E.C.1.14.11.29)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JZR _struct_keywords.text 'Prolyl hydroxylase, Oxidoreductase' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is the same as asym.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 6 ? TYR A 14 ? PRO A 189 TYR A 197 1 ? 9 HELX_P HELX_P2 2 TYR A 14 ? GLY A 23 ? TYR A 197 GLY A 206 1 ? 10 HELX_P HELX_P3 3 GLY A 32 ? THR A 49 ? GLY A 215 THR A 232 1 ? 18 HELX_P HELX_P4 4 CYS A 83 ? HIS A 99 ? CYS A 266 HIS A 282 1 ? 17 HELX_P HELX_P5 5 ASP A 152 ? GLY A 157 ? ASP A 335 GLY A 340 1 ? 6 HELX_P HELX_P6 6 ALA A 210 ? ARG A 215 ? ALA A 393 ARG A 398 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 25 SG ? ? A CYS 201 A CYS 208 1_555 ? ? ? ? ? ? ? 2.038 ? metalc1 metalc ? ? A HIS 191 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 374 A NI 401 1_555 ? ? ? ? ? ? ? 2.010 ? metalc2 metalc ? ? A ASP 132 OD2 ? ? ? 1_555 B NI . NI ? ? A ASP 315 A NI 401 1_555 ? ? ? ? ? ? ? 2.087 ? metalc3 metalc ? ? A HIS 130 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 313 A NI 401 1_555 ? ? ? ? ? ? ? 2.139 ? metalc4 metalc ? ? B NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 401 A HOH 537 1_555 ? ? ? ? ? ? ? 2.263 ? metalc5 metalc ? ? B NI . NI ? ? ? 1_555 C 4JR . N2 ? ? A NI 401 A 4JR 402 1_555 ? ? ? ? ? ? ? 1.943 ? metalc6 metalc ? ? B NI . NI ? ? ? 1_555 C 4JR . N3 ? ? A NI 401 A 4JR 402 1_555 ? ? ? ? ? ? ? 2.284 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 24 ? VAL A 27 ? ILE A 207 VAL A 210 A 2 ARG A 179 ? TRP A 184 ? ARG A 362 TRP A 367 A 3 ARG A 139 ? TYR A 146 ? ARG A 322 TYR A 329 A 4 ARG A 200 ? ASP A 209 ? ARG A 383 ASP A 392 A 5 ALA A 115 ? TYR A 120 ? ALA A 298 TYR A 303 A 6 LYS A 72 ? ILE A 76 ? LYS A 255 ILE A 259 B 1 ILE A 24 ? VAL A 27 ? ILE A 207 VAL A 210 B 2 ARG A 179 ? TRP A 184 ? ARG A 362 TRP A 367 B 3 ARG A 139 ? TYR A 146 ? ARG A 322 TYR A 329 B 4 ARG A 200 ? ASP A 209 ? ARG A 383 ASP A 392 B 5 ILE A 109 ? ARG A 112 ? ILE A 292 ARG A 295 C 1 TYR A 127 ? HIS A 130 ? TYR A 310 HIS A 313 C 2 HIS A 191 ? VAL A 193 ? HIS A 374 VAL A 376 C 3 LEU A 160 ? ILE A 162 ? LEU A 343 ILE A 345 C 4 ALA A 171 ? ILE A 173 ? ALA A 354 ILE A 356 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 27 ? N VAL A 210 O LEU A 180 ? O LEU A 363 A 2 3 O PHE A 183 ? O PHE A 366 N THR A 142 ? N THR A 325 A 3 4 N TYR A 145 ? N TYR A 328 O ILE A 203 ? O ILE A 386 A 4 5 O THR A 204 ? O THR A 387 N MET A 116 ? N MET A 299 A 5 6 O ALA A 115 ? O ALA A 298 N ILE A 76 ? N ILE A 259 B 1 2 N VAL A 27 ? N VAL A 210 O LEU A 180 ? O LEU A 363 B 2 3 O PHE A 183 ? O PHE A 366 N THR A 142 ? N THR A 325 B 3 4 N TYR A 145 ? N TYR A 328 O ILE A 203 ? O ILE A 386 B 4 5 O PHE A 208 ? O PHE A 391 N GLY A 111 ? N GLY A 294 C 1 2 N HIS A 130 ? N HIS A 313 O HIS A 191 ? O HIS A 374 C 2 3 O GLU A 192 ? O GLU A 375 N ARG A 161 ? N ARG A 344 C 3 4 N LEU A 160 ? N LEU A 343 O ILE A 173 ? O ILE A 356 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NI A 401' AC2 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE 4JR A 402' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 403' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 130 ? HIS A 313 . ? 1_555 ? 2 AC1 5 ASP A 132 ? ASP A 315 . ? 1_555 ? 3 AC1 5 HIS A 191 ? HIS A 374 . ? 1_555 ? 4 AC1 5 4JR C . ? 4JR A 402 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 537 . ? 1_555 ? 6 AC2 13 TYR A 120 ? TYR A 303 . ? 1_555 ? 7 AC2 13 TYR A 127 ? TYR A 310 . ? 1_555 ? 8 AC2 13 HIS A 130 ? HIS A 313 . ? 1_555 ? 9 AC2 13 ASP A 132 ? ASP A 315 . ? 1_555 ? 10 AC2 13 ARG A 139 ? ARG A 322 . ? 1_555 ? 11 AC2 13 HIS A 191 ? HIS A 374 . ? 1_555 ? 12 AC2 13 VAL A 193 ? VAL A 376 . ? 1_555 ? 13 AC2 13 TRP A 206 ? TRP A 389 . ? 1_555 ? 14 AC2 13 PHE A 208 ? PHE A 391 . ? 1_555 ? 15 AC2 13 ARG A 213 ? ARG A 396 . ? 1_555 ? 16 AC2 13 NI B . ? NI A 401 . ? 1_555 ? 17 AC2 13 EDO D . ? EDO A 403 . ? 1_555 ? 18 AC2 13 HOH E . ? HOH A 537 . ? 1_555 ? 19 AC3 5 TYR A 146 ? TYR A 329 . ? 1_555 ? 20 AC3 5 LEU A 160 ? LEU A 343 . ? 1_555 ? 21 AC3 5 ARG A 200 ? ARG A 383 . ? 1_555 ? 22 AC3 5 4JR C . ? 4JR A 402 . ? 1_555 ? 23 AC3 5 HOH E . ? HOH A 539 . ? 1_555 ? # _atom_sites.entry_id 4JZR _atom_sites.fract_transf_matrix[1][1] 0.008972 _atom_sites.fract_transf_matrix[1][2] 0.005180 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010360 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025016 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 184 ? ? ? A . n A 1 2 SER 2 185 ? ? ? A . n A 1 3 PHE 3 186 ? ? ? A . n A 1 4 THR 4 187 ? ? ? A . n A 1 5 MET 5 188 ? ? ? A . n A 1 6 PRO 6 189 189 PRO PRO A . n A 1 7 ALA 7 190 190 ALA ALA A . n A 1 8 LEU 8 191 191 LEU LEU A . n A 1 9 LYS 9 192 192 LYS LYS A . n A 1 10 LEU 10 193 193 LEU LEU A . n A 1 11 ALA 11 194 194 ALA ALA A . n A 1 12 LEU 12 195 195 LEU LEU A . n A 1 13 GLU 13 196 196 GLU GLU A . n A 1 14 TYR 14 197 197 TYR TYR A . n A 1 15 ILE 15 198 198 ILE ILE A . n A 1 16 VAL 16 199 199 VAL VAL A . n A 1 17 PRO 17 200 200 PRO PRO A . n A 1 18 CYS 18 201 201 CYS CYS A . n A 1 19 MET 19 202 202 MET MET A . n A 1 20 ASN 20 203 203 ASN ASN A . n A 1 21 LYS 21 204 204 LYS LYS A . n A 1 22 HIS 22 205 205 HIS HIS A . n A 1 23 GLY 23 206 206 GLY GLY A . n A 1 24 ILE 24 207 207 ILE ILE A . n A 1 25 CYS 25 208 208 CYS CYS A . n A 1 26 VAL 26 209 209 VAL VAL A . n A 1 27 VAL 27 210 210 VAL VAL A . n A 1 28 ASP 28 211 211 ASP ASP A . n A 1 29 ASP 29 212 212 ASP ASP A . n A 1 30 PHE 30 213 213 PHE PHE A . n A 1 31 LEU 31 214 214 LEU LEU A . n A 1 32 GLY 32 215 215 GLY GLY A . n A 1 33 LYS 33 216 216 LYS LYS A . n A 1 34 GLU 34 217 217 GLU GLU A . n A 1 35 THR 35 218 218 THR THR A . n A 1 36 GLY 36 219 219 GLY GLY A . n A 1 37 GLN 37 220 220 GLN GLN A . n A 1 38 GLN 38 221 221 GLN GLN A . n A 1 39 ILE 39 222 222 ILE ILE A . n A 1 40 GLY 40 223 223 GLY GLY A . n A 1 41 ASP 41 224 224 ASP ASP A . n A 1 42 GLU 42 225 225 GLU GLU A . n A 1 43 VAL 43 226 226 VAL VAL A . n A 1 44 ARG 44 227 227 ARG ARG A . n A 1 45 ALA 45 228 228 ALA ALA A . n A 1 46 LEU 46 229 229 LEU LEU A . n A 1 47 HIS 47 230 230 HIS HIS A . n A 1 48 ASP 48 231 231 ASP ASP A . n A 1 49 THR 49 232 232 THR THR A . n A 1 50 GLY 50 233 233 GLY GLY A . n A 1 51 LYS 51 234 234 LYS LYS A . n A 1 52 PHE 52 235 235 PHE PHE A . n A 1 53 THR 53 236 236 THR THR A . n A 1 54 ASP 54 237 237 ASP ASP A . n A 1 55 GLY 55 238 238 GLY GLY A . n A 1 56 GLN 56 239 239 GLN GLN A . n A 1 57 LEU 57 240 240 LEU LEU A . n A 1 58 VAL 58 241 241 VAL VAL A . n A 1 59 SER 59 242 242 SER SER A . n A 1 60 GLN 60 243 ? ? ? A . n A 1 61 LYS 61 244 ? ? ? A . n A 1 62 SER 62 245 ? ? ? A . n A 1 63 ASP 63 246 ? ? ? A . n A 1 64 SER 64 247 ? ? ? A . n A 1 65 SER 65 248 ? ? ? A . n A 1 66 LYS 66 249 ? ? ? A . n A 1 67 ASP 67 250 250 ASP ASP A . n A 1 68 ILE 68 251 251 ILE ILE A . n A 1 69 ARG 69 252 252 ARG ARG A . n A 1 70 GLY 70 253 253 GLY GLY A . n A 1 71 ASP 71 254 254 ASP ASP A . n A 1 72 LYS 72 255 255 LYS LYS A . n A 1 73 ILE 73 256 256 ILE ILE A . n A 1 74 THR 74 257 257 THR THR A . n A 1 75 TRP 75 258 258 TRP TRP A . n A 1 76 ILE 76 259 259 ILE ILE A . n A 1 77 GLU 77 260 260 GLU GLU A . n A 1 78 GLY 78 261 261 GLY GLY A . n A 1 79 LYS 79 262 262 LYS LYS A . n A 1 80 GLU 80 263 263 GLU GLU A . n A 1 81 PRO 81 264 264 PRO PRO A . n A 1 82 GLY 82 265 265 GLY GLY A . n A 1 83 CYS 83 266 266 CYS CYS A . n A 1 84 GLU 84 267 267 GLU GLU A . n A 1 85 THR 85 268 268 THR THR A . n A 1 86 ILE 86 269 269 ILE ILE A . n A 1 87 GLY 87 270 270 GLY GLY A . n A 1 88 LEU 88 271 271 LEU LEU A . n A 1 89 LEU 89 272 272 LEU LEU A . n A 1 90 MET 90 273 273 MET MET A . n A 1 91 SER 91 274 274 SER SER A . n A 1 92 SER 92 275 275 SER SER A . n A 1 93 MET 93 276 276 MET MET A . n A 1 94 ASP 94 277 277 ASP ASP A . n A 1 95 ASP 95 278 278 ASP ASP A . n A 1 96 LEU 96 279 279 LEU LEU A . n A 1 97 ILE 97 280 280 ILE ILE A . n A 1 98 ARG 98 281 281 ARG ARG A . n A 1 99 HIS 99 282 282 HIS HIS A . n A 1 100 CYS 100 283 283 CYS CYS A . n A 1 101 ASN 101 284 284 ASN ASN A . n A 1 102 GLY 102 285 285 GLY GLY A . n A 1 103 LYS 103 286 286 LYS LYS A . n A 1 104 LEU 104 287 287 LEU LEU A . n A 1 105 GLY 105 288 288 GLY GLY A . n A 1 106 SER 106 289 289 SER SER A . n A 1 107 TYR 107 290 290 TYR TYR A . n A 1 108 LYS 108 291 291 LYS LYS A . n A 1 109 ILE 109 292 292 ILE ILE A . n A 1 110 ASN 110 293 293 ASN ASN A . n A 1 111 GLY 111 294 294 GLY GLY A . n A 1 112 ARG 112 295 295 ARG ARG A . n A 1 113 THR 113 296 296 THR THR A . n A 1 114 LYS 114 297 297 LYS LYS A . n A 1 115 ALA 115 298 298 ALA ALA A . n A 1 116 MET 116 299 299 MET MET A . n A 1 117 VAL 117 300 300 VAL VAL A . n A 1 118 ALA 118 301 301 ALA ALA A . n A 1 119 CYS 119 302 302 CYS CYS A . n A 1 120 TYR 120 303 303 TYR TYR A . n A 1 121 PRO 121 304 304 PRO PRO A . n A 1 122 GLY 122 305 305 GLY GLY A . n A 1 123 ASN 123 306 306 ASN ASN A . n A 1 124 GLY 124 307 307 GLY GLY A . n A 1 125 THR 125 308 308 THR THR A . n A 1 126 GLY 126 309 309 GLY GLY A . n A 1 127 TYR 127 310 310 TYR TYR A . n A 1 128 VAL 128 311 311 VAL VAL A . n A 1 129 ARG 129 312 312 ARG ARG A . n A 1 130 HIS 130 313 313 HIS HIS A . n A 1 131 VAL 131 314 314 VAL VAL A . n A 1 132 ASP 132 315 315 ASP ASP A . n A 1 133 ASN 133 316 316 ASN ASN A . n A 1 134 PRO 134 317 317 PRO PRO A . n A 1 135 ASN 135 318 318 ASN ASN A . n A 1 136 GLY 136 319 319 GLY GLY A . n A 1 137 ASP 137 320 320 ASP ASP A . n A 1 138 GLY 138 321 321 GLY GLY A . n A 1 139 ARG 139 322 322 ARG ARG A . n A 1 140 CYS 140 323 323 CYS CYS A . n A 1 141 VAL 141 324 324 VAL VAL A . n A 1 142 THR 142 325 325 THR THR A . n A 1 143 CYS 143 326 326 CYS CYS A . n A 1 144 ILE 144 327 327 ILE ILE A . n A 1 145 TYR 145 328 328 TYR TYR A . n A 1 146 TYR 146 329 329 TYR TYR A . n A 1 147 LEU 147 330 330 LEU LEU A . n A 1 148 ASN 148 331 331 ASN ASN A . n A 1 149 LYS 149 332 332 LYS LYS A . n A 1 150 ASP 150 333 333 ASP ASP A . n A 1 151 TRP 151 334 334 TRP TRP A . n A 1 152 ASP 152 335 335 ASP ASP A . n A 1 153 ALA 153 336 336 ALA ALA A . n A 1 154 LYS 154 337 337 LYS LYS A . n A 1 155 VAL 155 338 338 VAL VAL A . n A 1 156 SER 156 339 339 SER SER A . n A 1 157 GLY 157 340 340 GLY GLY A . n A 1 158 GLY 158 341 341 GLY GLY A . n A 1 159 ILE 159 342 342 ILE ILE A . n A 1 160 LEU 160 343 343 LEU LEU A . n A 1 161 ARG 161 344 344 ARG ARG A . n A 1 162 ILE 162 345 345 ILE ILE A . n A 1 163 PHE 163 346 346 PHE PHE A . n A 1 164 PRO 164 347 347 PRO PRO A . n A 1 165 GLU 165 348 348 GLU GLU A . n A 1 166 GLY 166 349 349 GLY GLY A . n A 1 167 LYS 167 350 350 LYS LYS A . n A 1 168 ALA 168 351 351 ALA ALA A . n A 1 169 GLN 169 352 352 GLN GLN A . n A 1 170 PHE 170 353 353 PHE PHE A . n A 1 171 ALA 171 354 354 ALA ALA A . n A 1 172 ASP 172 355 355 ASP ASP A . n A 1 173 ILE 173 356 356 ILE ILE A . n A 1 174 GLU 174 357 357 GLU GLU A . n A 1 175 PRO 175 358 358 PRO PRO A . n A 1 176 LYS 176 359 359 LYS LYS A . n A 1 177 PHE 177 360 360 PHE PHE A . n A 1 178 ASP 178 361 361 ASP ASP A . n A 1 179 ARG 179 362 362 ARG ARG A . n A 1 180 LEU 180 363 363 LEU LEU A . n A 1 181 LEU 181 364 364 LEU LEU A . n A 1 182 PHE 182 365 365 PHE PHE A . n A 1 183 PHE 183 366 366 PHE PHE A . n A 1 184 TRP 184 367 367 TRP TRP A . n A 1 185 SER 185 368 368 SER SER A . n A 1 186 ASP 186 369 369 ASP ASP A . n A 1 187 ARG 187 370 370 ARG ARG A . n A 1 188 ARG 188 371 371 ARG ARG A . n A 1 189 ASN 189 372 372 ASN ASN A . n A 1 190 PRO 190 373 373 PRO PRO A . n A 1 191 HIS 191 374 374 HIS HIS A . n A 1 192 GLU 192 375 375 GLU GLU A . n A 1 193 VAL 193 376 376 VAL VAL A . n A 1 194 GLN 194 377 377 GLN GLN A . n A 1 195 PRO 195 378 378 PRO PRO A . n A 1 196 ALA 196 379 379 ALA ALA A . n A 1 197 TYR 197 380 380 TYR TYR A . n A 1 198 ALA 198 381 381 ALA ALA A . n A 1 199 THR 199 382 382 THR THR A . n A 1 200 ARG 200 383 383 ARG ARG A . n A 1 201 TYR 201 384 384 TYR TYR A . n A 1 202 ALA 202 385 385 ALA ALA A . n A 1 203 ILE 203 386 386 ILE ILE A . n A 1 204 THR 204 387 387 THR THR A . n A 1 205 VAL 205 388 388 VAL VAL A . n A 1 206 TRP 206 389 389 TRP TRP A . n A 1 207 TYR 207 390 390 TYR TYR A . n A 1 208 PHE 208 391 391 PHE PHE A . n A 1 209 ASP 209 392 392 ASP ASP A . n A 1 210 ALA 210 393 393 ALA ALA A . n A 1 211 ASP 211 394 394 ASP ASP A . n A 1 212 GLU 212 395 395 GLU GLU A . n A 1 213 ARG 213 396 396 ARG ARG A . n A 1 214 ALA 214 397 397 ALA ALA A . n A 1 215 ARG 215 398 398 ARG ARG A . n A 1 216 ALA 216 399 399 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 191 ? A HIS 374 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 OD2 ? A ASP 132 ? A ASP 315 ? 1_555 91.1 ? 2 NE2 ? A HIS 191 ? A HIS 374 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 NE2 ? A HIS 130 ? A HIS 313 ? 1_555 88.9 ? 3 OD2 ? A ASP 132 ? A ASP 315 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 NE2 ? A HIS 130 ? A HIS 313 ? 1_555 92.9 ? 4 NE2 ? A HIS 191 ? A HIS 374 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 O ? E HOH . ? A HOH 537 ? 1_555 92.7 ? 5 OD2 ? A ASP 132 ? A ASP 315 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 O ? E HOH . ? A HOH 537 ? 1_555 90.4 ? 6 NE2 ? A HIS 130 ? A HIS 313 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 O ? E HOH . ? A HOH 537 ? 1_555 176.3 ? 7 NE2 ? A HIS 191 ? A HIS 374 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N2 ? C 4JR . ? A 4JR 402 ? 1_555 95.9 ? 8 OD2 ? A ASP 132 ? A ASP 315 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N2 ? C 4JR . ? A 4JR 402 ? 1_555 172.1 ? 9 NE2 ? A HIS 130 ? A HIS 313 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N2 ? C 4JR . ? A 4JR 402 ? 1_555 90.9 ? 10 O ? E HOH . ? A HOH 537 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N2 ? C 4JR . ? A 4JR 402 ? 1_555 85.6 ? 11 NE2 ? A HIS 191 ? A HIS 374 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N3 ? C 4JR . ? A 4JR 402 ? 1_555 171.7 ? 12 OD2 ? A ASP 132 ? A ASP 315 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N3 ? C 4JR . ? A 4JR 402 ? 1_555 89.1 ? 13 NE2 ? A HIS 130 ? A HIS 313 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N3 ? C 4JR . ? A 4JR 402 ? 1_555 82.8 ? 14 O ? E HOH . ? A HOH 537 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N3 ? C 4JR . ? A 4JR 402 ? 1_555 95.5 ? 15 N2 ? C 4JR . ? A 4JR 402 ? 1_555 NI ? B NI . ? A NI 401 ? 1_555 N3 ? C 4JR . ? A 4JR 402 ? 1_555 84.6 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 197 ? ? -122.81 -63.87 2 1 ASN A 284 ? ? 57.92 -134.27 3 1 PHE A 346 ? ? -118.03 71.59 4 1 ALA A 351 ? ? -97.47 58.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 204 ? CG ? A LYS 21 CG 2 1 Y 1 A LYS 204 ? CD ? A LYS 21 CD 3 1 Y 1 A LYS 204 ? CE ? A LYS 21 CE 4 1 Y 1 A LYS 204 ? NZ ? A LYS 21 NZ 5 1 Y 1 A LYS 216 ? CD ? A LYS 33 CD 6 1 Y 1 A LYS 216 ? CE ? A LYS 33 CE 7 1 Y 1 A LYS 216 ? NZ ? A LYS 33 NZ 8 1 Y 1 A LYS 262 ? CG ? A LYS 79 CG 9 1 Y 1 A LYS 262 ? CD ? A LYS 79 CD 10 1 Y 1 A LYS 262 ? CE ? A LYS 79 CE 11 1 Y 1 A LYS 262 ? NZ ? A LYS 79 NZ 12 1 Y 1 A LYS 286 ? CD ? A LYS 103 CD 13 1 Y 1 A LYS 286 ? CE ? A LYS 103 CE 14 1 Y 1 A LYS 286 ? NZ ? A LYS 103 NZ 15 1 Y 1 A LYS 337 ? CG ? A LYS 154 CG 16 1 Y 1 A LYS 337 ? CD ? A LYS 154 CD 17 1 Y 1 A LYS 337 ? CE ? A LYS 154 CE 18 1 Y 1 A LYS 337 ? NZ ? A LYS 154 NZ 19 1 Y 1 A GLU 348 ? CG ? A GLU 165 CG 20 1 Y 1 A GLU 348 ? CD ? A GLU 165 CD 21 1 Y 1 A GLU 348 ? OE1 ? A GLU 165 OE1 22 1 Y 1 A GLU 348 ? OE2 ? A GLU 165 OE2 23 1 Y 1 A LYS 350 ? CD ? A LYS 167 CD 24 1 Y 1 A LYS 350 ? CE ? A LYS 167 CE 25 1 Y 1 A LYS 350 ? NZ ? A LYS 167 NZ 26 1 Y 1 A GLU 357 ? CD ? A GLU 174 CD 27 1 Y 1 A GLU 357 ? OE1 ? A GLU 174 OE1 28 1 Y 1 A GLU 357 ? OE2 ? A GLU 174 OE2 29 1 Y 1 A ARG 370 ? CZ ? A ARG 187 CZ 30 1 Y 1 A ARG 370 ? NH1 ? A ARG 187 NH1 31 1 Y 1 A ARG 370 ? NH2 ? A ARG 187 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 184 ? A GLY 1 2 1 Y 1 A SER 185 ? A SER 2 3 1 Y 1 A PHE 186 ? A PHE 3 4 1 Y 1 A THR 187 ? A THR 4 5 1 Y 1 A MET 188 ? A MET 5 6 1 Y 1 A GLN 243 ? A GLN 60 7 1 Y 1 A LYS 244 ? A LYS 61 8 1 Y 1 A SER 245 ? A SER 62 9 1 Y 1 A ASP 246 ? A ASP 63 10 1 Y 1 A SER 247 ? A SER 64 11 1 Y 1 A SER 248 ? A SER 65 12 1 Y 1 A LYS 249 ? A LYS 66 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 '2-(biphenyl-4-yl)-8-[(1-methyl-1H-imidazol-2-yl)methyl]-2,8-diazaspiro[4.5]decan-1-one' 4JR 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 401 1 NI NI A . C 3 4JR 1 402 1 4JR LIG A . D 4 EDO 1 403 1 EDO EDO A . E 5 HOH 1 501 1 HOH HOH A . E 5 HOH 2 502 2 HOH HOH A . E 5 HOH 3 503 3 HOH HOH A . E 5 HOH 4 504 4 HOH HOH A . E 5 HOH 5 505 5 HOH HOH A . E 5 HOH 6 506 6 HOH HOH A . E 5 HOH 7 507 7 HOH HOH A . E 5 HOH 8 508 8 HOH HOH A . E 5 HOH 9 509 9 HOH HOH A . E 5 HOH 10 510 10 HOH HOH A . E 5 HOH 11 511 11 HOH HOH A . E 5 HOH 12 512 12 HOH HOH A . E 5 HOH 13 513 13 HOH HOH A . E 5 HOH 14 514 14 HOH HOH A . E 5 HOH 15 515 15 HOH HOH A . E 5 HOH 16 516 16 HOH HOH A . E 5 HOH 17 517 17 HOH HOH A . E 5 HOH 18 518 18 HOH HOH A . E 5 HOH 19 519 19 HOH HOH A . E 5 HOH 20 520 20 HOH HOH A . E 5 HOH 21 521 21 HOH HOH A . E 5 HOH 22 522 22 HOH HOH A . E 5 HOH 23 523 23 HOH HOH A . E 5 HOH 24 524 24 HOH HOH A . E 5 HOH 25 525 25 HOH HOH A . E 5 HOH 26 526 26 HOH HOH A . E 5 HOH 27 527 27 HOH HOH A . E 5 HOH 28 528 28 HOH HOH A . E 5 HOH 29 529 29 HOH HOH A . E 5 HOH 30 530 30 HOH HOH A . E 5 HOH 31 531 31 HOH HOH A . E 5 HOH 32 532 32 HOH HOH A . E 5 HOH 33 533 33 HOH HOH A . E 5 HOH 34 534 34 HOH HOH A . E 5 HOH 35 535 35 HOH HOH A . E 5 HOH 36 536 36 HOH HOH A . E 5 HOH 37 537 37 HOH HOH A . E 5 HOH 38 538 38 HOH HOH A . E 5 HOH 39 539 39 HOH HOH A . E 5 HOH 40 540 40 HOH HOH A . E 5 HOH 41 541 41 HOH HOH A . E 5 HOH 42 542 42 HOH HOH A . E 5 HOH 43 543 43 HOH HOH A . E 5 HOH 44 544 44 HOH HOH A . E 5 HOH 45 545 45 HOH HOH A . E 5 HOH 46 546 46 HOH HOH A . E 5 HOH 47 547 47 HOH HOH A . E 5 HOH 48 548 48 HOH HOH A . E 5 HOH 49 549 49 HOH HOH A . #