data_4L1N # _entry.id 4L1N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4L1N pdb_00004l1n 10.2210/pdb4l1n/pdb RCSB RCSB080067 ? ? WWPDB D_1000080067 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-418140 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4L1N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-06-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative conserved lipoprotein (NT01CX_1156) from Clostridium novyi NT at 2.70 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4L1N _cell.length_a 146.870 _cell.length_b 146.870 _cell.length_c 125.970 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4L1N _symmetry.Int_Tables_number 155 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Conserved lipoprotein, putative' 23597.184 1 ? ? ? ? 2 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEVNKKDVKIETNTNKKDSEKENVNNTQENVSVEKQSAKKAKVKEDNSKK(MSE)FLKKELGKNSKPTFATKWKNSSNNK FSACIEGKGENALEEGVGKIYIKNLKEQSKWELDLDQDQQKNTPKYIDWFDDNNL(MSE)VVISRAHGTVSQGGILYKVN IETGQATELYNTKDNKKQVVYAVKKGDKIDVQILVYEDDDLLESHEETKTITVK ; _entity_poly.pdbx_seq_one_letter_code_can ;GEVNKKDVKIETNTNKKDSEKENVNNTQENVSVEKQSAKKAKVKEDNSKKMFLKKELGKNSKPTFATKWKNSSNNKFSAC IEGKGENALEEGVGKIYIKNLKEQSKWELDLDQDQQKNTPKYIDWFDDNNLMVVISRAHGTVSQGGILYKVNIETGQATE LYNTKDNKKQVVYAVKKGDKIDVQILVYEDDDLLESHEETKTITVK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-418140 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 VAL n 1 4 ASN n 1 5 LYS n 1 6 LYS n 1 7 ASP n 1 8 VAL n 1 9 LYS n 1 10 ILE n 1 11 GLU n 1 12 THR n 1 13 ASN n 1 14 THR n 1 15 ASN n 1 16 LYS n 1 17 LYS n 1 18 ASP n 1 19 SER n 1 20 GLU n 1 21 LYS n 1 22 GLU n 1 23 ASN n 1 24 VAL n 1 25 ASN n 1 26 ASN n 1 27 THR n 1 28 GLN n 1 29 GLU n 1 30 ASN n 1 31 VAL n 1 32 SER n 1 33 VAL n 1 34 GLU n 1 35 LYS n 1 36 GLN n 1 37 SER n 1 38 ALA n 1 39 LYS n 1 40 LYS n 1 41 ALA n 1 42 LYS n 1 43 VAL n 1 44 LYS n 1 45 GLU n 1 46 ASP n 1 47 ASN n 1 48 SER n 1 49 LYS n 1 50 LYS n 1 51 MSE n 1 52 PHE n 1 53 LEU n 1 54 LYS n 1 55 LYS n 1 56 GLU n 1 57 LEU n 1 58 GLY n 1 59 LYS n 1 60 ASN n 1 61 SER n 1 62 LYS n 1 63 PRO n 1 64 THR n 1 65 PHE n 1 66 ALA n 1 67 THR n 1 68 LYS n 1 69 TRP n 1 70 LYS n 1 71 ASN n 1 72 SER n 1 73 SER n 1 74 ASN n 1 75 ASN n 1 76 LYS n 1 77 PHE n 1 78 SER n 1 79 ALA n 1 80 CYS n 1 81 ILE n 1 82 GLU n 1 83 GLY n 1 84 LYS n 1 85 GLY n 1 86 GLU n 1 87 ASN n 1 88 ALA n 1 89 LEU n 1 90 GLU n 1 91 GLU n 1 92 GLY n 1 93 VAL n 1 94 GLY n 1 95 LYS n 1 96 ILE n 1 97 TYR n 1 98 ILE n 1 99 LYS n 1 100 ASN n 1 101 LEU n 1 102 LYS n 1 103 GLU n 1 104 GLN n 1 105 SER n 1 106 LYS n 1 107 TRP n 1 108 GLU n 1 109 LEU n 1 110 ASP n 1 111 LEU n 1 112 ASP n 1 113 GLN n 1 114 ASP n 1 115 GLN n 1 116 GLN n 1 117 LYS n 1 118 ASN n 1 119 THR n 1 120 PRO n 1 121 LYS n 1 122 TYR n 1 123 ILE n 1 124 ASP n 1 125 TRP n 1 126 PHE n 1 127 ASP n 1 128 ASP n 1 129 ASN n 1 130 ASN n 1 131 LEU n 1 132 MSE n 1 133 VAL n 1 134 VAL n 1 135 ILE n 1 136 SER n 1 137 ARG n 1 138 ALA n 1 139 HIS n 1 140 GLY n 1 141 THR n 1 142 VAL n 1 143 SER n 1 144 GLN n 1 145 GLY n 1 146 GLY n 1 147 ILE n 1 148 LEU n 1 149 TYR n 1 150 LYS n 1 151 VAL n 1 152 ASN n 1 153 ILE n 1 154 GLU n 1 155 THR n 1 156 GLY n 1 157 GLN n 1 158 ALA n 1 159 THR n 1 160 GLU n 1 161 LEU n 1 162 TYR n 1 163 ASN n 1 164 THR n 1 165 LYS n 1 166 ASP n 1 167 ASN n 1 168 LYS n 1 169 LYS n 1 170 GLN n 1 171 VAL n 1 172 VAL n 1 173 TYR n 1 174 ALA n 1 175 VAL n 1 176 LYS n 1 177 LYS n 1 178 GLY n 1 179 ASP n 1 180 LYS n 1 181 ILE n 1 182 ASP n 1 183 VAL n 1 184 GLN n 1 185 ILE n 1 186 LEU n 1 187 VAL n 1 188 TYR n 1 189 GLU n 1 190 ASP n 1 191 ASP n 1 192 ASP n 1 193 LEU n 1 194 LEU n 1 195 GLU n 1 196 SER n 1 197 HIS n 1 198 GLU n 1 199 GLU n 1 200 THR n 1 201 LYS n 1 202 THR n 1 203 ILE n 1 204 THR n 1 205 VAL n 1 206 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NT01CX_1156 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain NT _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium novyi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 386415 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0PXY7_CLONN _struct_ref.pdbx_db_accession A0PXY7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EVNKKDVKIETNTNKKDSEKENVNNTQENVSVEKQSAKKAKVKEDNSKKMFLKKELGKNSKPTFATKWKNSSNNKFSACI EGKGENALEEGVGKIYIKNLKEQSKWELDLDQDQQKNTPKYIDWFDDNNLMVVISRAHGTVSQGGILYKVNIETGQATEL YNTKDNKKQVVYAVKKGDKIDVQILVYEDDDLLESHEETKTITVK ; _struct_ref.pdbx_align_begin 36 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4L1N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 206 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0PXY7 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 240 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 36 _struct_ref_seq.pdbx_auth_seq_align_end 240 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4L1N _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A0PXY7 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4L1N # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 5.54 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 77.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;0.20000M lithium sulfate, 30.00000% polyethylene glycol 400, 0.1M sodium cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-05-31 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength 0.9794 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4L1N _reflns.d_resolution_high 2.70 _reflns.d_resolution_low 44.915 _reflns.number_obs 14440 _reflns.pdbx_Rmerge_I_obs 0.100 _reflns.pdbx_netI_over_sigmaI 11.410 _reflns.percent_possible_obs 99.600 _reflns.B_iso_Wilson_estimate 81.523 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.700 2.770 5580 ? 1073 0.011 1.8 ? ? ? ? ? 99.700 1 1 2.770 2.850 5259 ? 1013 0.011 2.0 ? ? ? ? ? 99.400 2 1 2.850 2.930 5216 ? 1008 0.011 2.5 ? ? ? ? ? 99.900 3 1 2.930 3.020 4929 ? 961 0.011 3.6 ? ? ? ? ? 99.400 4 1 3.020 3.120 4795 ? 946 0.011 4.8 ? ? ? ? ? 99.100 5 1 3.120 3.230 4198 ? 910 0.011 5.7 ? ? ? ? ? 99.300 6 1 3.230 3.350 4392 ? 891 0.011 8.5 ? ? ? ? ? 99.300 7 1 3.350 3.490 4550 ? 846 0.011 10.6 ? ? ? ? ? 100.000 8 1 3.490 3.640 4413 ? 829 0.011 12.4 ? ? ? ? ? 100.000 9 1 3.640 3.820 4067 ? 772 0.011 14.9 ? ? ? ? ? 100.000 10 1 3.820 4.030 3860 ? 742 0.011 16.1 ? ? ? ? ? 99.900 11 1 4.030 4.270 3664 ? 717 0.011 18.2 ? ? ? ? ? 99.700 12 1 4.270 4.560 3211 ? 658 0.011 20.6 ? ? ? ? ? 98.900 13 1 4.560 4.930 2740 ? 622 0.011 20.1 ? ? ? ? ? 99.500 14 1 4.930 5.400 3028 ? 574 0.011 21.2 ? ? ? ? ? 99.800 15 1 5.400 6.040 2703 ? 527 0.011 20.4 ? ? ? ? ? 100.000 16 1 6.040 6.970 2345 ? 466 0.011 21.5 ? ? ? ? ? 99.600 17 1 6.970 8.540 1856 ? 395 0.011 23.6 ? ? ? ? ? 99.500 18 1 8.540 12.080 1434 ? 310 0.011 27.1 ? ? ? ? ? 98.400 19 1 12.080 ? 857 ? 180 0.011 28.4 ? ? ? ? ? 97.300 20 1 # _refine.entry_id 4L1N _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 44.915 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5800 _refine.ls_number_reflns_obs 14439 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. THE N-TERMINAL RESIDUES (36-79) ARE DISORDERED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1978 _refine.ls_R_factor_R_work 0.1976 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2006 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_number_reflns_R_free 723 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 66.3923 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 11.2929 _refine.aniso_B[2][2] 11.2929 _refine.aniso_B[3][3] -22.5858 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9128 _refine.correlation_coeff_Fo_to_Fc_free 0.9078 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 160.570 _refine.B_iso_min 33.280 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.750 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4L1N _refine_analyze.Luzzati_coordinate_error_obs 0.392 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1278 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 1288 _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 44.915 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 628 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 45 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 176 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1297 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 171 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1312 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1297 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1745 1.230 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.660 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 3.350 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.7000 _refine_ls_shell.d_res_low 2.9200 _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.percent_reflns_obs 99.5800 _refine_ls_shell.number_reflns_R_work 2782 _refine_ls_shell.R_factor_all 0.2494 _refine_ls_shell.R_factor_R_work 0.2470 _refine_ls_shell.R_factor_R_free 0.2919 _refine_ls_shell.percent_reflns_R_free 5.3100 _refine_ls_shell.number_reflns_R_free 156 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2938 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4L1N _struct.title 'Crystal structure of a putative conserved lipoprotein (NT01CX_1156) from Clostridium novyi NT at 2.70 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF15525 family protein, DUF4652, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4L1N # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 50 C ? ? ? 1_555 A MSE 51 N ? ? A LYS 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale2 covale both ? A MSE 51 C ? ? ? 1_555 A PHE 52 N ? ? A MSE 85 A PHE 86 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale3 covale both ? A LEU 131 C ? ? ? 1_555 A MSE 132 N ? ? A LEU 165 A MSE 166 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A MSE 132 C ? ? ? 1_555 A VAL 133 N ? ? A MSE 166 A VAL 167 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 49 ? LYS A 50 ? LYS A 83 LYS A 84 A 2 GLN A 157 ? TYR A 162 ? GLN A 191 TYR A 196 A 3 ILE A 147 ? ASN A 152 ? ILE A 181 ASN A 186 A 4 ASN A 130 ? ARG A 137 ? ASN A 164 ARG A 171 A 5 ASN A 118 ? TRP A 125 ? ASN A 152 TRP A 159 B 1 PHE A 52 ? GLU A 56 ? PHE A 86 GLU A 90 B 2 SER A 105 ? LEU A 111 ? SER A 139 LEU A 145 B 3 LYS A 95 ? ASN A 100 ? LYS A 129 ASN A 134 B 4 PHE A 77 ? GLU A 82 ? PHE A 111 GLU A 116 B 5 LYS A 70 ? ASN A 71 ? LYS A 104 ASN A 105 C 1 LYS A 169 ? LYS A 177 ? LYS A 203 LYS A 211 C 2 LYS A 180 ? TYR A 188 ? LYS A 214 TYR A 222 C 3 SER A 196 ? THR A 204 ? SER A 230 THR A 238 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 49 ? N LYS A 83 O ALA A 158 ? O ALA A 192 A 2 3 O THR A 159 ? O THR A 193 N LYS A 150 ? N LYS A 184 A 3 4 O TYR A 149 ? O TYR A 183 N VAL A 133 ? N VAL A 167 A 4 5 O MSE A 132 ? O MSE A 166 N ASP A 124 ? N ASP A 158 B 1 2 N LYS A 55 ? N LYS A 89 O GLU A 108 ? O GLU A 142 B 2 3 O LEU A 109 ? O LEU A 143 N ILE A 96 ? N ILE A 130 B 3 4 O TYR A 97 ? O TYR A 131 N CYS A 80 ? N CYS A 114 B 4 5 O ALA A 79 ? O ALA A 113 N LYS A 70 ? N LYS A 104 C 1 2 N VAL A 175 ? N VAL A 209 O ASP A 182 ? O ASP A 216 C 2 3 N VAL A 183 ? N VAL A 217 O LYS A 201 ? O LYS A 235 # _atom_sites.entry_id 4L1N _atom_sites.fract_transf_matrix[1][1] 0.006809 _atom_sites.fract_transf_matrix[1][2] 0.003931 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007862 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007938 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLU 2 36 ? ? ? A . n A 1 3 VAL 3 37 ? ? ? A . n A 1 4 ASN 4 38 ? ? ? A . n A 1 5 LYS 5 39 ? ? ? A . n A 1 6 LYS 6 40 ? ? ? A . n A 1 7 ASP 7 41 ? ? ? A . n A 1 8 VAL 8 42 ? ? ? A . n A 1 9 LYS 9 43 ? ? ? A . n A 1 10 ILE 10 44 ? ? ? A . n A 1 11 GLU 11 45 ? ? ? A . n A 1 12 THR 12 46 ? ? ? A . n A 1 13 ASN 13 47 ? ? ? A . n A 1 14 THR 14 48 ? ? ? A . n A 1 15 ASN 15 49 ? ? ? A . n A 1 16 LYS 16 50 ? ? ? A . n A 1 17 LYS 17 51 ? ? ? A . n A 1 18 ASP 18 52 ? ? ? A . n A 1 19 SER 19 53 ? ? ? A . n A 1 20 GLU 20 54 ? ? ? A . n A 1 21 LYS 21 55 ? ? ? A . n A 1 22 GLU 22 56 ? ? ? A . n A 1 23 ASN 23 57 ? ? ? A . n A 1 24 VAL 24 58 ? ? ? A . n A 1 25 ASN 25 59 ? ? ? A . n A 1 26 ASN 26 60 ? ? ? A . n A 1 27 THR 27 61 ? ? ? A . n A 1 28 GLN 28 62 ? ? ? A . n A 1 29 GLU 29 63 ? ? ? A . n A 1 30 ASN 30 64 ? ? ? A . n A 1 31 VAL 31 65 ? ? ? A . n A 1 32 SER 32 66 ? ? ? A . n A 1 33 VAL 33 67 ? ? ? A . n A 1 34 GLU 34 68 ? ? ? A . n A 1 35 LYS 35 69 ? ? ? A . n A 1 36 GLN 36 70 ? ? ? A . n A 1 37 SER 37 71 ? ? ? A . n A 1 38 ALA 38 72 ? ? ? A . n A 1 39 LYS 39 73 ? ? ? A . n A 1 40 LYS 40 74 ? ? ? A . n A 1 41 ALA 41 75 ? ? ? A . n A 1 42 LYS 42 76 ? ? ? A . n A 1 43 VAL 43 77 ? ? ? A . n A 1 44 LYS 44 78 ? ? ? A . n A 1 45 GLU 45 79 ? ? ? A . n A 1 46 ASP 46 80 80 ASP ASP A . n A 1 47 ASN 47 81 81 ASN ASN A . n A 1 48 SER 48 82 82 SER SER A . n A 1 49 LYS 49 83 83 LYS LYS A . n A 1 50 LYS 50 84 84 LYS LYS A . n A 1 51 MSE 51 85 85 MSE MSE A . n A 1 52 PHE 52 86 86 PHE PHE A . n A 1 53 LEU 53 87 87 LEU LEU A . n A 1 54 LYS 54 88 88 LYS LYS A . n A 1 55 LYS 55 89 89 LYS LYS A . n A 1 56 GLU 56 90 90 GLU GLU A . n A 1 57 LEU 57 91 91 LEU LEU A . n A 1 58 GLY 58 92 92 GLY GLY A . n A 1 59 LYS 59 93 93 LYS LYS A . n A 1 60 ASN 60 94 94 ASN ASN A . n A 1 61 SER 61 95 95 SER SER A . n A 1 62 LYS 62 96 96 LYS LYS A . n A 1 63 PRO 63 97 97 PRO PRO A . n A 1 64 THR 64 98 98 THR THR A . n A 1 65 PHE 65 99 99 PHE PHE A . n A 1 66 ALA 66 100 100 ALA ALA A . n A 1 67 THR 67 101 101 THR THR A . n A 1 68 LYS 68 102 102 LYS LYS A . n A 1 69 TRP 69 103 103 TRP TRP A . n A 1 70 LYS 70 104 104 LYS LYS A . n A 1 71 ASN 71 105 105 ASN ASN A . n A 1 72 SER 72 106 106 SER SER A . n A 1 73 SER 73 107 107 SER SER A . n A 1 74 ASN 74 108 108 ASN ASN A . n A 1 75 ASN 75 109 109 ASN ASN A . n A 1 76 LYS 76 110 110 LYS LYS A . n A 1 77 PHE 77 111 111 PHE PHE A . n A 1 78 SER 78 112 112 SER SER A . n A 1 79 ALA 79 113 113 ALA ALA A . n A 1 80 CYS 80 114 114 CYS CYS A . n A 1 81 ILE 81 115 115 ILE ILE A . n A 1 82 GLU 82 116 116 GLU GLU A . n A 1 83 GLY 83 117 117 GLY GLY A . n A 1 84 LYS 84 118 118 LYS LYS A . n A 1 85 GLY 85 119 119 GLY GLY A . n A 1 86 GLU 86 120 120 GLU GLU A . n A 1 87 ASN 87 121 121 ASN ASN A . n A 1 88 ALA 88 122 122 ALA ALA A . n A 1 89 LEU 89 123 123 LEU LEU A . n A 1 90 GLU 90 124 124 GLU GLU A . n A 1 91 GLU 91 125 125 GLU GLU A . n A 1 92 GLY 92 126 126 GLY GLY A . n A 1 93 VAL 93 127 127 VAL VAL A . n A 1 94 GLY 94 128 128 GLY GLY A . n A 1 95 LYS 95 129 129 LYS LYS A . n A 1 96 ILE 96 130 130 ILE ILE A . n A 1 97 TYR 97 131 131 TYR TYR A . n A 1 98 ILE 98 132 132 ILE ILE A . n A 1 99 LYS 99 133 133 LYS LYS A . n A 1 100 ASN 100 134 134 ASN ASN A . n A 1 101 LEU 101 135 135 LEU LEU A . n A 1 102 LYS 102 136 136 LYS LYS A . n A 1 103 GLU 103 137 137 GLU GLU A . n A 1 104 GLN 104 138 138 GLN GLN A . n A 1 105 SER 105 139 139 SER SER A . n A 1 106 LYS 106 140 140 LYS LYS A . n A 1 107 TRP 107 141 141 TRP TRP A . n A 1 108 GLU 108 142 142 GLU GLU A . n A 1 109 LEU 109 143 143 LEU LEU A . n A 1 110 ASP 110 144 144 ASP ASP A . n A 1 111 LEU 111 145 145 LEU LEU A . n A 1 112 ASP 112 146 146 ASP ASP A . n A 1 113 GLN 113 147 147 GLN GLN A . n A 1 114 ASP 114 148 148 ASP ASP A . n A 1 115 GLN 115 149 149 GLN GLN A . n A 1 116 GLN 116 150 150 GLN GLN A . n A 1 117 LYS 117 151 151 LYS LYS A . n A 1 118 ASN 118 152 152 ASN ASN A . n A 1 119 THR 119 153 153 THR THR A . n A 1 120 PRO 120 154 154 PRO PRO A . n A 1 121 LYS 121 155 155 LYS LYS A . n A 1 122 TYR 122 156 156 TYR TYR A . n A 1 123 ILE 123 157 157 ILE ILE A . n A 1 124 ASP 124 158 158 ASP ASP A . n A 1 125 TRP 125 159 159 TRP TRP A . n A 1 126 PHE 126 160 160 PHE PHE A . n A 1 127 ASP 127 161 161 ASP ASP A . n A 1 128 ASP 128 162 162 ASP ASP A . n A 1 129 ASN 129 163 163 ASN ASN A . n A 1 130 ASN 130 164 164 ASN ASN A . n A 1 131 LEU 131 165 165 LEU LEU A . n A 1 132 MSE 132 166 166 MSE MSE A . n A 1 133 VAL 133 167 167 VAL VAL A . n A 1 134 VAL 134 168 168 VAL VAL A . n A 1 135 ILE 135 169 169 ILE ILE A . n A 1 136 SER 136 170 170 SER SER A . n A 1 137 ARG 137 171 171 ARG ARG A . n A 1 138 ALA 138 172 172 ALA ALA A . n A 1 139 HIS 139 173 173 HIS HIS A . n A 1 140 GLY 140 174 174 GLY GLY A . n A 1 141 THR 141 175 175 THR THR A . n A 1 142 VAL 142 176 176 VAL VAL A . n A 1 143 SER 143 177 177 SER SER A . n A 1 144 GLN 144 178 178 GLN GLN A . n A 1 145 GLY 145 179 179 GLY GLY A . n A 1 146 GLY 146 180 180 GLY GLY A . n A 1 147 ILE 147 181 181 ILE ILE A . n A 1 148 LEU 148 182 182 LEU LEU A . n A 1 149 TYR 149 183 183 TYR TYR A . n A 1 150 LYS 150 184 184 LYS LYS A . n A 1 151 VAL 151 185 185 VAL VAL A . n A 1 152 ASN 152 186 186 ASN ASN A . n A 1 153 ILE 153 187 187 ILE ILE A . n A 1 154 GLU 154 188 188 GLU GLU A . n A 1 155 THR 155 189 189 THR THR A . n A 1 156 GLY 156 190 190 GLY GLY A . n A 1 157 GLN 157 191 191 GLN GLN A . n A 1 158 ALA 158 192 192 ALA ALA A . n A 1 159 THR 159 193 193 THR THR A . n A 1 160 GLU 160 194 194 GLU GLU A . n A 1 161 LEU 161 195 195 LEU LEU A . n A 1 162 TYR 162 196 196 TYR TYR A . n A 1 163 ASN 163 197 197 ASN ASN A . n A 1 164 THR 164 198 198 THR THR A . n A 1 165 LYS 165 199 199 LYS LYS A . n A 1 166 ASP 166 200 200 ASP ASP A . n A 1 167 ASN 167 201 201 ASN ASN A . n A 1 168 LYS 168 202 202 LYS LYS A . n A 1 169 LYS 169 203 203 LYS LYS A . n A 1 170 GLN 170 204 204 GLN GLN A . n A 1 171 VAL 171 205 205 VAL VAL A . n A 1 172 VAL 172 206 206 VAL VAL A . n A 1 173 TYR 173 207 207 TYR TYR A . n A 1 174 ALA 174 208 208 ALA ALA A . n A 1 175 VAL 175 209 209 VAL VAL A . n A 1 176 LYS 176 210 210 LYS LYS A . n A 1 177 LYS 177 211 211 LYS LYS A . n A 1 178 GLY 178 212 212 GLY GLY A . n A 1 179 ASP 179 213 213 ASP ASP A . n A 1 180 LYS 180 214 214 LYS LYS A . n A 1 181 ILE 181 215 215 ILE ILE A . n A 1 182 ASP 182 216 216 ASP ASP A . n A 1 183 VAL 183 217 217 VAL VAL A . n A 1 184 GLN 184 218 218 GLN GLN A . n A 1 185 ILE 185 219 219 ILE ILE A . n A 1 186 LEU 186 220 220 LEU LEU A . n A 1 187 VAL 187 221 221 VAL VAL A . n A 1 188 TYR 188 222 222 TYR TYR A . n A 1 189 GLU 189 223 223 GLU GLU A . n A 1 190 ASP 190 224 224 ASP ASP A . n A 1 191 ASP 191 225 225 ASP ASP A . n A 1 192 ASP 192 226 226 ASP ASP A . n A 1 193 LEU 193 227 227 LEU LEU A . n A 1 194 LEU 194 228 228 LEU LEU A . n A 1 195 GLU 195 229 229 GLU GLU A . n A 1 196 SER 196 230 230 SER SER A . n A 1 197 HIS 197 231 231 HIS HIS A . n A 1 198 GLU 198 232 232 GLU GLU A . n A 1 199 GLU 199 233 233 GLU GLU A . n A 1 200 THR 200 234 234 THR THR A . n A 1 201 LYS 201 235 235 LYS LYS A . n A 1 202 THR 202 236 236 THR THR A . n A 1 203 ILE 203 237 237 ILE ILE A . n A 1 204 THR 204 238 238 THR THR A . n A 1 205 VAL 205 239 239 VAL VAL A . n A 1 206 LYS 206 240 240 LYS LYS A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 241 HOH HOH A . B 2 HOH 2 302 242 HOH HOH A . B 2 HOH 3 303 243 HOH HOH A . B 2 HOH 4 304 244 HOH HOH A . B 2 HOH 5 305 245 HOH HOH A . B 2 HOH 6 306 246 HOH HOH A . B 2 HOH 7 307 247 HOH HOH A . B 2 HOH 8 308 248 HOH HOH A . B 2 HOH 9 309 249 HOH HOH A . B 2 HOH 10 310 250 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 51 A MSE 85 ? MET SELENOMETHIONINE 2 A MSE 132 A MSE 166 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-26 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 20.9548 _pdbx_refine_tls.origin_y -11.6104 _pdbx_refine_tls.origin_z -18.5285 _pdbx_refine_tls.T[1][1] -0.1293 _pdbx_refine_tls.T[2][2] -0.0577 _pdbx_refine_tls.T[3][3] -0.0276 _pdbx_refine_tls.T[1][2] 0.0725 _pdbx_refine_tls.T[1][3] 0.0829 _pdbx_refine_tls.T[2][3] -0.0608 _pdbx_refine_tls.L[1][1] 4.7996 _pdbx_refine_tls.L[2][2] 1.7628 _pdbx_refine_tls.L[3][3] 1.8728 _pdbx_refine_tls.L[1][2] -1.2492 _pdbx_refine_tls.L[1][3] -0.9065 _pdbx_refine_tls.L[2][3] 0.7359 _pdbx_refine_tls.S[1][1] 0.0925 _pdbx_refine_tls.S[2][2] -0.1202 _pdbx_refine_tls.S[3][3] 0.0277 _pdbx_refine_tls.S[1][2] 0.3990 _pdbx_refine_tls.S[1][3] -0.1983 _pdbx_refine_tls.S[2][3] -0.3728 _pdbx_refine_tls.S[2][1] -0.3694 _pdbx_refine_tls.S[3][1] 0.1834 _pdbx_refine_tls.S[3][2] 0.3186 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 80 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 240 _pdbx_refine_tls_group.selection_details '{A|80 - 240}' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'March 15, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4L1N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (36-240) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 81 ? ? -93.75 46.14 2 1 PHE A 99 ? ? -155.48 57.84 3 1 SER A 177 ? ? -69.48 59.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 80 ? CG ? A ASP 46 CG 2 1 Y 1 A ASP 80 ? OD1 ? A ASP 46 OD1 3 1 Y 1 A ASP 80 ? OD2 ? A ASP 46 OD2 4 1 Y 1 A ASN 81 ? CG ? A ASN 47 CG 5 1 Y 1 A ASN 81 ? OD1 ? A ASN 47 OD1 6 1 Y 1 A ASN 81 ? ND2 ? A ASN 47 ND2 7 1 Y 1 A ASN 94 ? CG ? A ASN 60 CG 8 1 Y 1 A ASN 94 ? OD1 ? A ASN 60 OD1 9 1 Y 1 A ASN 94 ? ND2 ? A ASN 60 ND2 10 1 Y 1 A LYS 136 ? CG ? A LYS 102 CG 11 1 Y 1 A LYS 136 ? CD ? A LYS 102 CD 12 1 Y 1 A LYS 136 ? CE ? A LYS 102 CE 13 1 Y 1 A LYS 136 ? NZ ? A LYS 102 NZ 14 1 Y 1 A LYS 240 ? CG ? A LYS 206 CG 15 1 Y 1 A LYS 240 ? CD ? A LYS 206 CD 16 1 Y 1 A LYS 240 ? CE ? A LYS 206 CE 17 1 Y 1 A LYS 240 ? NZ ? A LYS 206 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLU 36 ? A GLU 2 3 1 Y 1 A VAL 37 ? A VAL 3 4 1 Y 1 A ASN 38 ? A ASN 4 5 1 Y 1 A LYS 39 ? A LYS 5 6 1 Y 1 A LYS 40 ? A LYS 6 7 1 Y 1 A ASP 41 ? A ASP 7 8 1 Y 1 A VAL 42 ? A VAL 8 9 1 Y 1 A LYS 43 ? A LYS 9 10 1 Y 1 A ILE 44 ? A ILE 10 11 1 Y 1 A GLU 45 ? A GLU 11 12 1 Y 1 A THR 46 ? A THR 12 13 1 Y 1 A ASN 47 ? A ASN 13 14 1 Y 1 A THR 48 ? A THR 14 15 1 Y 1 A ASN 49 ? A ASN 15 16 1 Y 1 A LYS 50 ? A LYS 16 17 1 Y 1 A LYS 51 ? A LYS 17 18 1 Y 1 A ASP 52 ? A ASP 18 19 1 Y 1 A SER 53 ? A SER 19 20 1 Y 1 A GLU 54 ? A GLU 20 21 1 Y 1 A LYS 55 ? A LYS 21 22 1 Y 1 A GLU 56 ? A GLU 22 23 1 Y 1 A ASN 57 ? A ASN 23 24 1 Y 1 A VAL 58 ? A VAL 24 25 1 Y 1 A ASN 59 ? A ASN 25 26 1 Y 1 A ASN 60 ? A ASN 26 27 1 Y 1 A THR 61 ? A THR 27 28 1 Y 1 A GLN 62 ? A GLN 28 29 1 Y 1 A GLU 63 ? A GLU 29 30 1 Y 1 A ASN 64 ? A ASN 30 31 1 Y 1 A VAL 65 ? A VAL 31 32 1 Y 1 A SER 66 ? A SER 32 33 1 Y 1 A VAL 67 ? A VAL 33 34 1 Y 1 A GLU 68 ? A GLU 34 35 1 Y 1 A LYS 69 ? A LYS 35 36 1 Y 1 A GLN 70 ? A GLN 36 37 1 Y 1 A SER 71 ? A SER 37 38 1 Y 1 A ALA 72 ? A ALA 38 39 1 Y 1 A LYS 73 ? A LYS 39 40 1 Y 1 A LYS 74 ? A LYS 40 41 1 Y 1 A ALA 75 ? A ALA 41 42 1 Y 1 A LYS 76 ? A LYS 42 43 1 Y 1 A VAL 77 ? A VAL 43 44 1 Y 1 A LYS 78 ? A LYS 44 45 1 Y 1 A GLU 79 ? A GLU 45 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #