data_4L3U # _entry.id 4L3U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4L3U pdb_00004l3u 10.2210/pdb4l3u/pdb RCSB RCSB080146 ? ? WWPDB D_1000080146 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-420464 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4L3U _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-06-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (ABAYE3784) from Acinetobacter baumannii AYE at 1.95 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4L3U _cell.length_a 61.739 _cell.length_b 61.739 _cell.length_c 94.886 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4L3U _symmetry.Int_Tables_number 80 _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 15684.055 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 57 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQKTENKTE(MSE)SIQNSNSIVIQQLEKFKAQDHFAGDGQLYTGVQNSALR(MSE)SLNQKVADTAQAFIALYQQKNEP TKAELLQVLANGISQIDPDKLDTEDREQVATTFESFLDIVGLESSEGILNKWVYGEEISKLLEQDKH ; _entity_poly.pdbx_seq_one_letter_code_can ;GQKTENKTEMSIQNSNSIVIQQLEKFKAQDHFAGDGQLYTGVQNSALRMSLNQKVADTAQAFIALYQQKNEPTKAELLQV LANGISQIDPDKLDTEDREQVATTFESFLDIVGLESSEGILNKWVYGEEISKLLEQDKH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-420464 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 LYS n 1 4 THR n 1 5 GLU n 1 6 ASN n 1 7 LYS n 1 8 THR n 1 9 GLU n 1 10 MSE n 1 11 SER n 1 12 ILE n 1 13 GLN n 1 14 ASN n 1 15 SER n 1 16 ASN n 1 17 SER n 1 18 ILE n 1 19 VAL n 1 20 ILE n 1 21 GLN n 1 22 GLN n 1 23 LEU n 1 24 GLU n 1 25 LYS n 1 26 PHE n 1 27 LYS n 1 28 ALA n 1 29 GLN n 1 30 ASP n 1 31 HIS n 1 32 PHE n 1 33 ALA n 1 34 GLY n 1 35 ASP n 1 36 GLY n 1 37 GLN n 1 38 LEU n 1 39 TYR n 1 40 THR n 1 41 GLY n 1 42 VAL n 1 43 GLN n 1 44 ASN n 1 45 SER n 1 46 ALA n 1 47 LEU n 1 48 ARG n 1 49 MSE n 1 50 SER n 1 51 LEU n 1 52 ASN n 1 53 GLN n 1 54 LYS n 1 55 VAL n 1 56 ALA n 1 57 ASP n 1 58 THR n 1 59 ALA n 1 60 GLN n 1 61 ALA n 1 62 PHE n 1 63 ILE n 1 64 ALA n 1 65 LEU n 1 66 TYR n 1 67 GLN n 1 68 GLN n 1 69 LYS n 1 70 ASN n 1 71 GLU n 1 72 PRO n 1 73 THR n 1 74 LYS n 1 75 ALA n 1 76 GLU n 1 77 LEU n 1 78 LEU n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 ALA n 1 83 ASN n 1 84 GLY n 1 85 ILE n 1 86 SER n 1 87 GLN n 1 88 ILE n 1 89 ASP n 1 90 PRO n 1 91 ASP n 1 92 LYS n 1 93 LEU n 1 94 ASP n 1 95 THR n 1 96 GLU n 1 97 ASP n 1 98 ARG n 1 99 GLU n 1 100 GLN n 1 101 VAL n 1 102 ALA n 1 103 THR n 1 104 THR n 1 105 PHE n 1 106 GLU n 1 107 SER n 1 108 PHE n 1 109 LEU n 1 110 ASP n 1 111 ILE n 1 112 VAL n 1 113 GLY n 1 114 LEU n 1 115 GLU n 1 116 SER n 1 117 SER n 1 118 GLU n 1 119 GLY n 1 120 ILE n 1 121 LEU n 1 122 ASN n 1 123 LYS n 1 124 TRP n 1 125 VAL n 1 126 TYR n 1 127 GLY n 1 128 GLU n 1 129 GLU n 1 130 ILE n 1 131 SER n 1 132 LYS n 1 133 LEU n 1 134 LEU n 1 135 GLU n 1 136 GLN n 1 137 ASP n 1 138 LYS n 1 139 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ABAYE3784 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain AYE _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acinetobacter baumannii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 509173 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B0V6M1_ACIBY _struct_ref.pdbx_db_accession B0V6M1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QKTENKTEMSIQNSNSIVIQQLEKFKAQDHFAGDGQLYTGVQNSALRMSLNQKVADTAQAFIALYQQKNEPTKAELLQVL ANGISQIDPDKLDTEDREQVATTFESFLDIVGLESSEGILNKWVYGEEISKLLEQDKH ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4L3U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B0V6M1 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 157 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 157 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4L3U _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B0V6M1 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4L3U # loop_ _exptl_crystal.id _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 2.88 ? 57.33 ;THE STRUCTURE WAS SOLVED USING TWO WAVELENGTH MAD PHASES FROM ANOTHER CRYSTAL. THE PHASING CRYSTAL DIFFRACTED TO 2.2 A. THE CRYSTAL USED FOR REFINEMENT DIFFRACTED TO 1.95 A. BOTH CRYSTALS ARE MEROHEDRALLY TWINNED. ; ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, SITTING DROP' 4.0 277 '20% polyethylene glycol 6000, 0.1M citric acid pH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' ? ? 2 'VAPOR DIFFUSION, SITTING DROP' 4.0 277 '20% polyethylene glycol 6000, 3% Sorbitol, 0.1M citric acid pH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.details _diffrn_detector.pdbx_collection_date 1 CCD 'ADSC QUANTUM 315' 'KOHZU: Double Crystal Si(111)' 2012-10-25 2 PIXEL 'DECTRIS PILATUS 6M' 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' 2013-04-01 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 M 'Double Crystal Si(111)' MAD 1 x-ray 2 M 'double crystal Si(111)' MAD 1 x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.918401 1.0 2 0.7514 1.0 3 0.9792 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site 1 SYNCHROTRON 8.2.2 'ALS BEAMLINE 8.2.2' 0.918401 ? ALS 2 SYNCHROTRON BL12-2 'SSRL BEAMLINE BL12-2' 0.7514,0.9792 ? SSRL # _reflns.entry_id 4L3U _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 47.443 _reflns.number_all 12983 _reflns.number_obs 12983 _reflns.pdbx_netI_over_sigmaI 15.900 _reflns.pdbx_Rsym_value 0.075 _reflns.pdbx_redundancy 7.300 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.950 2.000 ? 7085 ? 0.699 1.1 0.699 ? 7.400 ? 963 100.000 1 1,2 2.000 2.060 ? 6848 ? 0.462 1.6 0.462 ? 7.400 ? 924 100.000 2 1,2 2.060 2.120 ? 6594 ? 0.349 2.1 0.349 ? 7.400 ? 893 100.000 3 1,2 2.120 2.180 ? 6539 ? 0.279 2.7 0.279 ? 7.400 ? 887 100.000 4 1,2 2.180 2.250 ? 6211 ? 0.262 2.7 0.262 ? 7.200 ? 857 100.000 5 1,2 2.250 2.330 ? 6049 ? 0.202 3.6 0.202 ? 7.400 ? 821 100.000 6 1,2 2.330 2.420 ? 6016 ? 0.145 5.1 0.145 ? 7.400 ? 817 100.000 7 1,2 2.420 2.520 ? 5549 ? 0.127 5.6 0.127 ? 7.300 ? 757 100.000 8 1,2 2.520 2.630 ? 5333 ? 0.112 6.4 0.112 ? 7.300 ? 728 100.000 9 1,2 2.630 2.760 ? 5214 ? 0.105 6.7 0.105 ? 7.300 ? 711 100.000 10 1,2 2.760 2.910 ? 4923 ? 0.091 7.1 0.091 ? 7.200 ? 682 100.000 11 1,2 2.910 3.080 ? 4580 ? 0.080 8.3 0.080 ? 7.200 ? 633 100.000 12 1,2 3.080 3.300 ? 4201 ? 0.069 9.1 0.069 ? 7.100 ? 591 100.000 13 1,2 3.300 3.560 ? 3937 ? 0.058 11.4 0.058 ? 7.100 ? 555 100.000 14 1,2 3.560 3.900 ? 3443 ? 0.049 13.4 0.049 ? 6.700 ? 515 100.000 15 1,2 3.900 4.360 ? 3339 ? 0.047 12.8 0.047 ? 7.100 ? 470 100.000 16 1,2 4.360 5.040 ? 3080 ? 0.052 11.5 0.052 ? 7.600 ? 403 100.000 17 1,2 5.040 6.170 ? 2686 ? 0.049 12.3 0.049 ? 7.600 ? 353 100.000 18 1,2 6.170 8.720 ? 2026 ? 0.045 13.0 0.045 ? 7.500 ? 271 100.000 19 1,2 8.720 47.443 ? 1040 ? 0.042 15.2 0.042 ? 6.800 ? 152 98.000 20 1,2 # _refine.entry_id 4L3U _refine.ls_d_res_high 1.9500 _refine.ls_d_res_low 47.443 _refine.pdbx_ls_sigma_F 1.760 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8700 _refine.ls_number_reflns_obs 12959 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ;1. RIDING HYDROGENS WERE BUILT TO IMPROVE THE ANTIBUMPING RESTRAINTS BUT WERE EXCLUDED FROM F_CALC. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT.5. DATA ARE MEROHEDRALLY TWINNED WITH TWIN LAW (H, -K, -L).THE REFINED TWIN FRACTION WAS 0.28. THE R-FREE TEST SET REFLECTIONS WERE CHOSEN IN THIN RESOLUTION SHELLS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1804 _refine.ls_R_factor_R_work 0.1735 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2055 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.8100 _refine.ls_number_reflns_R_free 753 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.4430 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 83.720 _refine.B_iso_min 19.380 _refine.pdbx_overall_phase_error 30.5000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 936 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 994 _refine_hist.d_res_high 1.9500 _refine_hist.d_res_low 47.443 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 954 0.004 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1294 0.683 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 152 0.039 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 170 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 345 11.985 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.9530 2.1010 5 94.0000 2384 . 0.2600 0.2580 . 144 . 2528 . . 'X-RAY DIFFRACTION' 2.1010 2.3075 5 94.0000 2400 . 0.2635 0.2917 . 145 . 2545 . . 'X-RAY DIFFRACTION' 2.3075 2.6300 5 94.0000 2353 . 0.2067 0.2463 . 146 . 2499 . . 'X-RAY DIFFRACTION' 2.6300 3.2720 5 94.0000 2408 . 0.1823 0.2112 . 150 . 2558 . . 'X-RAY DIFFRACTION' 3.2720 7.7806 5 93.0000 2395 . 0.1349 0.1801 . 168 . 2563 . . 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF3571 family protein (ABAYE3784) from Acinetobacter baumannii AYE at 1.95 A resolution' _struct.entry_id 4L3U _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.text ;PF1209 family protein, DUF 3571, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4L3U # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 13 ? ALA A 28 ? GLN A 31 ALA A 46 1 ? 16 HELX_P HELX_P2 2 ASN A 44 ? LYS A 69 ? ASN A 62 LYS A 87 1 ? 26 HELX_P HELX_P3 3 THR A 73 ? GLN A 87 ? THR A 91 GLN A 105 1 ? 15 HELX_P HELX_P4 4 ILE A 88 ? LEU A 93 ? ILE A 106 LEU A 111 5 ? 6 HELX_P HELX_P5 5 ASP A 94 ? GLY A 113 ? ASP A 112 GLY A 131 1 ? 20 HELX_P HELX_P6 6 GLY A 119 ? GLU A 135 ? GLY A 137 GLU A 153 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ARG 48 C ? ? ? 1_555 A MSE 49 N ? ? A ARG 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 49 C ? ? ? 1_555 A SER 50 N ? ? A MSE 67 A SER 68 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 SER A 117 ? SER A 135 . ? 1_555 ? 2 AC1 2 HOH C . ? HOH A 332 . ? 1_555 ? # _atom_sites.entry_id 4L3U _atom_sites.fract_transf_matrix[1][1] 0.016197 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016197 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010539 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 20 ? ? ? A . n A 1 3 LYS 3 21 ? ? ? A . n A 1 4 THR 4 22 ? ? ? A . n A 1 5 GLU 5 23 ? ? ? A . n A 1 6 ASN 6 24 ? ? ? A . n A 1 7 LYS 7 25 ? ? ? A . n A 1 8 THR 8 26 ? ? ? A . n A 1 9 GLU 9 27 ? ? ? A . n A 1 10 MSE 10 28 ? ? ? A . n A 1 11 SER 11 29 ? ? ? A . n A 1 12 ILE 12 30 ? ? ? A . n A 1 13 GLN 13 31 31 GLN GLN A . n A 1 14 ASN 14 32 32 ASN ASN A . n A 1 15 SER 15 33 33 SER SER A . n A 1 16 ASN 16 34 34 ASN ASN A . n A 1 17 SER 17 35 35 SER SER A . n A 1 18 ILE 18 36 36 ILE ILE A . n A 1 19 VAL 19 37 37 VAL VAL A . n A 1 20 ILE 20 38 38 ILE ILE A . n A 1 21 GLN 21 39 39 GLN GLN A . n A 1 22 GLN 22 40 40 GLN GLN A . n A 1 23 LEU 23 41 41 LEU LEU A . n A 1 24 GLU 24 42 42 GLU GLU A . n A 1 25 LYS 25 43 43 LYS LYS A . n A 1 26 PHE 26 44 44 PHE PHE A . n A 1 27 LYS 27 45 45 LYS LYS A . n A 1 28 ALA 28 46 46 ALA ALA A . n A 1 29 GLN 29 47 47 GLN GLN A . n A 1 30 ASP 30 48 48 ASP ASP A . n A 1 31 HIS 31 49 49 HIS HIS A . n A 1 32 PHE 32 50 50 PHE PHE A . n A 1 33 ALA 33 51 51 ALA ALA A . n A 1 34 GLY 34 52 52 GLY GLY A . n A 1 35 ASP 35 53 53 ASP ASP A . n A 1 36 GLY 36 54 54 GLY GLY A . n A 1 37 GLN 37 55 55 GLN GLN A . n A 1 38 LEU 38 56 56 LEU LEU A . n A 1 39 TYR 39 57 57 TYR TYR A . n A 1 40 THR 40 58 58 THR THR A . n A 1 41 GLY 41 59 59 GLY GLY A . n A 1 42 VAL 42 60 60 VAL VAL A . n A 1 43 GLN 43 61 61 GLN GLN A . n A 1 44 ASN 44 62 62 ASN ASN A . n A 1 45 SER 45 63 63 SER SER A . n A 1 46 ALA 46 64 64 ALA ALA A . n A 1 47 LEU 47 65 65 LEU LEU A . n A 1 48 ARG 48 66 66 ARG ARG A . n A 1 49 MSE 49 67 67 MSE MSE A . n A 1 50 SER 50 68 68 SER SER A . n A 1 51 LEU 51 69 69 LEU LEU A . n A 1 52 ASN 52 70 70 ASN ASN A . n A 1 53 GLN 53 71 71 GLN GLN A . n A 1 54 LYS 54 72 72 LYS LYS A . n A 1 55 VAL 55 73 73 VAL VAL A . n A 1 56 ALA 56 74 74 ALA ALA A . n A 1 57 ASP 57 75 75 ASP ASP A . n A 1 58 THR 58 76 76 THR THR A . n A 1 59 ALA 59 77 77 ALA ALA A . n A 1 60 GLN 60 78 78 GLN GLN A . n A 1 61 ALA 61 79 79 ALA ALA A . n A 1 62 PHE 62 80 80 PHE PHE A . n A 1 63 ILE 63 81 81 ILE ILE A . n A 1 64 ALA 64 82 82 ALA ALA A . n A 1 65 LEU 65 83 83 LEU LEU A . n A 1 66 TYR 66 84 84 TYR TYR A . n A 1 67 GLN 67 85 85 GLN GLN A . n A 1 68 GLN 68 86 86 GLN GLN A . n A 1 69 LYS 69 87 87 LYS LYS A . n A 1 70 ASN 70 88 88 ASN ASN A . n A 1 71 GLU 71 89 89 GLU GLU A . n A 1 72 PRO 72 90 90 PRO PRO A . n A 1 73 THR 73 91 91 THR THR A . n A 1 74 LYS 74 92 92 LYS LYS A . n A 1 75 ALA 75 93 93 ALA ALA A . n A 1 76 GLU 76 94 94 GLU GLU A . n A 1 77 LEU 77 95 95 LEU LEU A . n A 1 78 LEU 78 96 96 LEU LEU A . n A 1 79 GLN 79 97 97 GLN GLN A . n A 1 80 VAL 80 98 98 VAL VAL A . n A 1 81 LEU 81 99 99 LEU LEU A . n A 1 82 ALA 82 100 100 ALA ALA A . n A 1 83 ASN 83 101 101 ASN ASN A . n A 1 84 GLY 84 102 102 GLY GLY A . n A 1 85 ILE 85 103 103 ILE ILE A . n A 1 86 SER 86 104 104 SER SER A . n A 1 87 GLN 87 105 105 GLN GLN A . n A 1 88 ILE 88 106 106 ILE ILE A . n A 1 89 ASP 89 107 107 ASP ASP A . n A 1 90 PRO 90 108 108 PRO PRO A . n A 1 91 ASP 91 109 109 ASP ASP A . n A 1 92 LYS 92 110 110 LYS LYS A . n A 1 93 LEU 93 111 111 LEU LEU A . n A 1 94 ASP 94 112 112 ASP ASP A . n A 1 95 THR 95 113 113 THR THR A . n A 1 96 GLU 96 114 114 GLU GLU A . n A 1 97 ASP 97 115 115 ASP ASP A . n A 1 98 ARG 98 116 116 ARG ARG A . n A 1 99 GLU 99 117 117 GLU GLU A . n A 1 100 GLN 100 118 118 GLN GLN A . n A 1 101 VAL 101 119 119 VAL VAL A . n A 1 102 ALA 102 120 120 ALA ALA A . n A 1 103 THR 103 121 121 THR THR A . n A 1 104 THR 104 122 122 THR THR A . n A 1 105 PHE 105 123 123 PHE PHE A . n A 1 106 GLU 106 124 124 GLU GLU A . n A 1 107 SER 107 125 125 SER SER A . n A 1 108 PHE 108 126 126 PHE PHE A . n A 1 109 LEU 109 127 127 LEU LEU A . n A 1 110 ASP 110 128 128 ASP ASP A . n A 1 111 ILE 111 129 129 ILE ILE A . n A 1 112 VAL 112 130 130 VAL VAL A . n A 1 113 GLY 113 131 131 GLY GLY A . n A 1 114 LEU 114 132 132 LEU LEU A . n A 1 115 GLU 115 133 133 GLU GLU A . n A 1 116 SER 116 134 134 SER SER A . n A 1 117 SER 117 135 135 SER SER A . n A 1 118 GLU 118 136 136 GLU GLU A . n A 1 119 GLY 119 137 137 GLY GLY A . n A 1 120 ILE 120 138 138 ILE ILE A . n A 1 121 LEU 121 139 139 LEU LEU A . n A 1 122 ASN 122 140 140 ASN ASN A . n A 1 123 LYS 123 141 141 LYS LYS A . n A 1 124 TRP 124 142 142 TRP TRP A . n A 1 125 VAL 125 143 143 VAL VAL A . n A 1 126 TYR 126 144 144 TYR TYR A . n A 1 127 GLY 127 145 145 GLY GLY A . n A 1 128 GLU 128 146 146 GLU GLU A . n A 1 129 GLU 129 147 147 GLU GLU A . n A 1 130 ILE 130 148 148 ILE ILE A . n A 1 131 SER 131 149 149 SER SER A . n A 1 132 LYS 132 150 150 LYS LYS A . n A 1 133 LEU 133 151 151 LEU LEU A . n A 1 134 LEU 134 152 152 LEU LEU A . n A 1 135 GLU 135 153 153 GLU GLU A . n A 1 136 GLN 136 154 ? ? ? A . n A 1 137 ASP 137 155 ? ? ? A . n A 1 138 LYS 138 156 ? ? ? A . n A 1 139 HIS 139 157 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 201 158 CL CL A . C 3 HOH 1 301 159 HOH HOH A . C 3 HOH 2 302 160 HOH HOH A . C 3 HOH 3 303 161 HOH HOH A . C 3 HOH 4 304 162 HOH HOH A . C 3 HOH 5 305 163 HOH HOH A . C 3 HOH 6 306 164 HOH HOH A . C 3 HOH 7 307 165 HOH HOH A . C 3 HOH 8 308 166 HOH HOH A . C 3 HOH 9 309 167 HOH HOH A . C 3 HOH 10 310 168 HOH HOH A . C 3 HOH 11 311 169 HOH HOH A . C 3 HOH 12 312 170 HOH HOH A . C 3 HOH 13 313 171 HOH HOH A . C 3 HOH 14 314 172 HOH HOH A . C 3 HOH 15 315 173 HOH HOH A . C 3 HOH 16 316 174 HOH HOH A . C 3 HOH 17 317 175 HOH HOH A . C 3 HOH 18 318 176 HOH HOH A . C 3 HOH 19 319 177 HOH HOH A . C 3 HOH 20 320 178 HOH HOH A . C 3 HOH 21 321 179 HOH HOH A . C 3 HOH 22 322 180 HOH HOH A . C 3 HOH 23 323 181 HOH HOH A . C 3 HOH 24 324 182 HOH HOH A . C 3 HOH 25 325 183 HOH HOH A . C 3 HOH 26 326 184 HOH HOH A . C 3 HOH 27 327 185 HOH HOH A . C 3 HOH 28 328 186 HOH HOH A . C 3 HOH 29 329 187 HOH HOH A . C 3 HOH 30 330 188 HOH HOH A . C 3 HOH 31 331 189 HOH HOH A . C 3 HOH 32 332 190 HOH HOH A . C 3 HOH 33 333 191 HOH HOH A . C 3 HOH 34 334 192 HOH HOH A . C 3 HOH 35 335 193 HOH HOH A . C 3 HOH 36 336 194 HOH HOH A . C 3 HOH 37 337 195 HOH HOH A . C 3 HOH 38 338 196 HOH HOH A . C 3 HOH 39 339 197 HOH HOH A . C 3 HOH 40 340 198 HOH HOH A . C 3 HOH 41 341 199 HOH HOH A . C 3 HOH 42 342 200 HOH HOH A . C 3 HOH 43 343 201 HOH HOH A . C 3 HOH 44 344 202 HOH HOH A . C 3 HOH 45 345 203 HOH HOH A . C 3 HOH 46 346 204 HOH HOH A . C 3 HOH 47 347 205 HOH HOH A . C 3 HOH 48 348 206 HOH HOH A . C 3 HOH 49 349 207 HOH HOH A . C 3 HOH 50 350 208 HOH HOH A . C 3 HOH 51 351 209 HOH HOH A . C 3 HOH 52 352 210 HOH HOH A . C 3 HOH 53 353 211 HOH HOH A . C 3 HOH 54 354 212 HOH HOH A . C 3 HOH 55 355 213 HOH HOH A . C 3 HOH 56 356 214 HOH HOH A . C 3 HOH 57 357 215 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 49 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 67 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 335 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation_author.name' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_ref_seq_dif.details' 8 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 38.6739 _pdbx_refine_tls.origin_y 17.5633 _pdbx_refine_tls.origin_z 44.0442 _pdbx_refine_tls.T[1][1] 0.2626 _pdbx_refine_tls.T[2][2] 0.2127 _pdbx_refine_tls.T[3][3] 0.2126 _pdbx_refine_tls.T[1][2] -0.0110 _pdbx_refine_tls.T[1][3] 0.0019 _pdbx_refine_tls.T[2][3] 0.0129 _pdbx_refine_tls.L[1][1] 1.1158 _pdbx_refine_tls.L[2][2] 1.1508 _pdbx_refine_tls.L[3][3] 1.1523 _pdbx_refine_tls.L[1][2] -0.0046 _pdbx_refine_tls.L[1][3] -0.2455 _pdbx_refine_tls.L[2][3] -0.0833 _pdbx_refine_tls.S[1][1] -0.0031 _pdbx_refine_tls.S[2][2] -0.0336 _pdbx_refine_tls.S[3][3] 0.0377 _pdbx_refine_tls.S[1][2] -0.0008 _pdbx_refine_tls.S[1][3] -0.1039 _pdbx_refine_tls.S[2][3] 0.0578 _pdbx_refine_tls.S[2][1] -0.1321 _pdbx_refine_tls.S[3][1] 0.2201 _pdbx_refine_tls.S[3][2] 0.0710 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 0 _pdbx_refine_tls_group.selection_details ;chain 'A' and (resid 31 through 153 ) ; _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 PHENIX 1.8.2 ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4L3U _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 20-157 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 55 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -87.57 _pdbx_validate_torsion.psi -112.50 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 31 ? CG ? A GLN 13 CG 2 1 Y 1 A GLN 31 ? CD ? A GLN 13 CD 3 1 Y 1 A GLN 31 ? OE1 ? A GLN 13 OE1 4 1 Y 1 A GLN 31 ? NE2 ? A GLN 13 NE2 5 1 Y 1 A ASN 32 ? CG ? A ASN 14 CG 6 1 Y 1 A ASN 32 ? OD1 ? A ASN 14 OD1 7 1 Y 1 A ASN 32 ? ND2 ? A ASN 14 ND2 8 1 Y 1 A GLN 39 ? CD ? A GLN 21 CD 9 1 Y 1 A GLN 39 ? OE1 ? A GLN 21 OE1 10 1 Y 1 A GLN 39 ? NE2 ? A GLN 21 NE2 11 1 Y 1 A LYS 43 ? CD ? A LYS 25 CD 12 1 Y 1 A LYS 43 ? CE ? A LYS 25 CE 13 1 Y 1 A LYS 43 ? NZ ? A LYS 25 NZ 14 1 Y 1 A ASN 88 ? CG ? A ASN 70 CG 15 1 Y 1 A ASN 88 ? OD1 ? A ASN 70 OD1 16 1 Y 1 A ASN 88 ? ND2 ? A ASN 70 ND2 17 1 Y 1 A GLU 89 ? CG ? A GLU 71 CG 18 1 Y 1 A GLU 89 ? CD ? A GLU 71 CD 19 1 Y 1 A GLU 89 ? OE1 ? A GLU 71 OE1 20 1 Y 1 A GLU 89 ? OE2 ? A GLU 71 OE2 21 1 Y 1 A LYS 110 ? CE ? A LYS 92 CE 22 1 Y 1 A LYS 110 ? NZ ? A LYS 92 NZ 23 1 Y 1 A GLU 146 ? CG ? A GLU 128 CG 24 1 Y 1 A GLU 146 ? CD ? A GLU 128 CD 25 1 Y 1 A GLU 146 ? OE1 ? A GLU 128 OE1 26 1 Y 1 A GLU 146 ? OE2 ? A GLU 128 OE2 27 1 Y 1 A GLU 153 ? CG ? A GLU 135 CG 28 1 Y 1 A GLU 153 ? CD ? A GLU 135 CD 29 1 Y 1 A GLU 153 ? OE1 ? A GLU 135 OE1 30 1 Y 1 A GLU 153 ? OE2 ? A GLU 135 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 20 ? A GLN 2 3 1 Y 1 A LYS 21 ? A LYS 3 4 1 Y 1 A THR 22 ? A THR 4 5 1 Y 1 A GLU 23 ? A GLU 5 6 1 Y 1 A ASN 24 ? A ASN 6 7 1 Y 1 A LYS 25 ? A LYS 7 8 1 Y 1 A THR 26 ? A THR 8 9 1 Y 1 A GLU 27 ? A GLU 9 10 1 Y 1 A MSE 28 ? A MSE 10 11 1 Y 1 A SER 29 ? A SER 11 12 1 Y 1 A ILE 30 ? A ILE 12 13 1 Y 1 A GLN 154 ? A GLN 136 14 1 Y 1 A ASP 155 ? A ASP 137 15 1 Y 1 A LYS 156 ? A LYS 138 16 1 Y 1 A HIS 157 ? A HIS 139 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_reflns_twin.domain_id 1 _pdbx_reflns_twin.crystal_id 1 _pdbx_reflns_twin.diffrn_id 1 _pdbx_reflns_twin.fraction 0.280 _pdbx_reflns_twin.operator h,-k,-l _pdbx_reflns_twin.type ? _pdbx_reflns_twin.mean_F_square_over_mean_F2 ? _pdbx_reflns_twin.mean_I2_over_mean_I_square ? #