data_4L6E # _entry.id 4L6E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4L6E RCSB RCSB080238 WWPDB D_1000080238 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NESG-HR9193B _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4L6E _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-06-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Mao, L.' 4 'Xiao, R.' 5 'Maglaqui, M.' 6 'Kogan, S.' 7 'Wang, H.' 8 'Everett, J.K.' 9 'Acton, T.B.' 10 'Montelione, G.T.' 11 'Hunt, J.F.' 12 'Tong, L.' 13 'Northeast Structural Genomics Consortium (NESG)' 14 # _citation.id primary _citation.title 'Crystal Structure of the RanBD1 fourth domain of E3 SUMO-protein ligase RanBP2.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vorobiev, S.' 1 primary 'Su, M.' 2 primary 'Seetharaman, J.' 3 primary 'Mao, L.' 4 primary 'Xiao, R.' 5 primary 'Maglaqui, M.' 6 primary 'Kogan, S.' 7 primary 'Wang, H.' 8 primary 'Everett, J.K.' 9 primary 'Acton, T.B.' 10 primary 'Montelione, G.T.' 11 primary 'Hunt, J.F.' 12 primary 'Tong, L.' 13 # _cell.entry_id 4L6E _cell.length_a 69.481 _cell.length_b 69.481 _cell.length_c 152.550 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4L6E _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 SUMO-protein ligase RanBP2' 18708.486 1 '6.3.2.-, 5.2.1.8' ? 'RanBD1 4 domain (UNP residues 2907-3050)' ? 2 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;358 kDa nucleoporin, Nuclear pore complex protein Nup358, Nucleoporin Nup358, Ran-binding protein 2, RanBP2, p270, Putative peptidyl-prolyl cis-trans isomerase, PPIase, Rotamase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GHHHHHHSH(MSE)NEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHT (MSE)KNYYRIL(MSE)RRDQVFKVCANHVITKT(MSE)ELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADC FKKTFEECQQNL(MSE)KLQKG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHMNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILMRR DQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NESG-HR9193B # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 MSE n 1 12 ASN n 1 13 GLU n 1 14 ASP n 1 15 ILE n 1 16 HIS n 1 17 PHE n 1 18 GLU n 1 19 PRO n 1 20 ILE n 1 21 VAL n 1 22 SER n 1 23 LEU n 1 24 PRO n 1 25 GLU n 1 26 VAL n 1 27 GLU n 1 28 VAL n 1 29 LYS n 1 30 SER n 1 31 GLY n 1 32 GLU n 1 33 GLU n 1 34 ASP n 1 35 GLU n 1 36 GLU n 1 37 ILE n 1 38 LEU n 1 39 PHE n 1 40 LYS n 1 41 GLU n 1 42 ARG n 1 43 ALA n 1 44 LYS n 1 45 LEU n 1 46 TYR n 1 47 ARG n 1 48 TRP n 1 49 ASP n 1 50 ARG n 1 51 ASP n 1 52 VAL n 1 53 SER n 1 54 GLN n 1 55 TRP n 1 56 LYS n 1 57 GLU n 1 58 ARG n 1 59 GLY n 1 60 VAL n 1 61 GLY n 1 62 ASP n 1 63 ILE n 1 64 LYS n 1 65 ILE n 1 66 LEU n 1 67 TRP n 1 68 HIS n 1 69 THR n 1 70 MSE n 1 71 LYS n 1 72 ASN n 1 73 TYR n 1 74 TYR n 1 75 ARG n 1 76 ILE n 1 77 LEU n 1 78 MSE n 1 79 ARG n 1 80 ARG n 1 81 ASP n 1 82 GLN n 1 83 VAL n 1 84 PHE n 1 85 LYS n 1 86 VAL n 1 87 CYS n 1 88 ALA n 1 89 ASN n 1 90 HIS n 1 91 VAL n 1 92 ILE n 1 93 THR n 1 94 LYS n 1 95 THR n 1 96 MSE n 1 97 GLU n 1 98 LEU n 1 99 LYS n 1 100 PRO n 1 101 LEU n 1 102 ASN n 1 103 VAL n 1 104 SER n 1 105 ASN n 1 106 ASN n 1 107 ALA n 1 108 LEU n 1 109 VAL n 1 110 TRP n 1 111 THR n 1 112 ALA n 1 113 SER n 1 114 ASP n 1 115 TYR n 1 116 ALA n 1 117 ASP n 1 118 GLY n 1 119 GLU n 1 120 ALA n 1 121 LYS n 1 122 VAL n 1 123 GLU n 1 124 GLN n 1 125 LEU n 1 126 ALA n 1 127 VAL n 1 128 ARG n 1 129 PHE n 1 130 LYS n 1 131 THR n 1 132 LYS n 1 133 GLU n 1 134 VAL n 1 135 ALA n 1 136 ASP n 1 137 CYS n 1 138 PHE n 1 139 LYS n 1 140 LYS n 1 141 THR n 1 142 PHE n 1 143 GLU n 1 144 GLU n 1 145 CYS n 1 146 GLN n 1 147 GLN n 1 148 ASN n 1 149 LEU n 1 150 MSE n 1 151 LYS n 1 152 LEU n 1 153 GLN n 1 154 LYS n 1 155 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NUP358, RANBP2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET15_NESG _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name HR9193B-2907-3050-15.1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBP2_HUMAN _struct_ref.pdbx_db_accession P49792 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHV ITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKG ; _struct_ref.pdbx_align_begin 2907 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4L6E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 12 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P49792 _struct_ref_seq.db_align_beg 2907 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 3050 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2907 _struct_ref_seq.pdbx_auth_seq_align_end 3050 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4L6E MSE A 1 ? UNP P49792 ? ? 'EXPRESSION TAG' 2896 1 1 4L6E GLY A 2 ? UNP P49792 ? ? 'EXPRESSION TAG' 2897 2 1 4L6E HIS A 3 ? UNP P49792 ? ? 'EXPRESSION TAG' 2898 3 1 4L6E HIS A 4 ? UNP P49792 ? ? 'EXPRESSION TAG' 2899 4 1 4L6E HIS A 5 ? UNP P49792 ? ? 'EXPRESSION TAG' 2900 5 1 4L6E HIS A 6 ? UNP P49792 ? ? 'EXPRESSION TAG' 2901 6 1 4L6E HIS A 7 ? UNP P49792 ? ? 'EXPRESSION TAG' 2902 7 1 4L6E HIS A 8 ? UNP P49792 ? ? 'EXPRESSION TAG' 2903 8 1 4L6E SER A 9 ? UNP P49792 ? ? 'EXPRESSION TAG' 2904 9 1 4L6E HIS A 10 ? UNP P49792 ? ? 'EXPRESSION TAG' 2905 10 1 4L6E MSE A 11 ? UNP P49792 ? ? 'EXPRESSION TAG' 2906 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4L6E _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Microbatch crystallization under oil' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '12% PEG 3350, 0.1M sodium acetate, pH 7.00, Microbatch crystallization under oil, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2013-06-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97924 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_wavelength_list 0.97924 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C # _reflns.entry_id 4L6E _reflns.B_iso_Wilson_estimate 69.210 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 14342 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.0 _reflns.pdbx_redundancy 2.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.558 _reflns_shell.meanI_over_sigI_obs 0.98 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.number_unique_all 1645 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4L6E _refine.ls_d_res_high 2.496 _refine.ls_d_res_low 32.212 _refine.pdbx_ls_sigma_F 1.09 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.500 _refine.ls_number_reflns_obs 14259 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_R_work 0.197 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.222 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 656 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 79.441 _refine.solvent_model_param_bsol 64.205 _refine.solvent_model_param_ksol 0.338 _refine.pdbx_isotropic_thermal_model anisotropic _refine.aniso_B[1][1] 6.991 _refine.aniso_B[2][2] 6.991 _refine.aniso_B[3][3] -13.982 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.790 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.860 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 183.91 _refine.B_iso_min 46.25 _refine.pdbx_overall_phase_error 27.340 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1035 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1072 _refine_hist.d_res_high 2.496 _refine_hist.d_res_low 32.212 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1054 0.010 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1415 1.182 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 151 0.080 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 179 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 402 15.913 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.496 2.689 5 100.000 2725 . 0.323 0.384 . 143 . 2868 . . 'X-RAY DIFFRACTION' 2.689 2.959 5 100.000 2715 . 0.285 0.326 . 116 . 2831 . . 'X-RAY DIFFRACTION' 2.959 3.387 5 100.000 2754 . 0.236 0.272 . 119 . 2873 . . 'X-RAY DIFFRACTION' 3.387 4.266 5 99.000 2718 . 0.183 0.184 . 124 . 2842 . . 'X-RAY DIFFRACTION' 4.266 32.215 5 99.000 2691 . 0.165 0.198 . 154 . 2845 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4L6E _struct.title ;Crystal Structure of the RanBD1 fourth domain of E3 SUMO-protein ligase RanBP2. Northeast Structural Genomics Consortium (NESG) Target HR9193b ; _struct.pdbx_descriptor 'E3 SUMO-protein ligase RanBP2 (E.C.6.3.2.-, 5.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4L6E _struct_keywords.text ;Structural Genomics, PSI-Biology, Protein Structure Initiative, NESG, RanBP2, RanBD1, Northeast Structural Genomics Consortium, LIGASE, ISOMERASE ; _struct_keywords.pdbx_keywords 'LIGASE, ISOMERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 131 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 153 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 3026 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 3048 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 69 C ? ? ? 1_555 A MSE 70 N ? ? A THR 2964 A MSE 2965 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 70 C ? ? ? 1_555 A LYS 71 N ? ? A MSE 2965 A LYS 2966 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A LEU 77 C ? ? ? 1_555 A MSE 78 N ? ? A LEU 2972 A MSE 2973 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 78 C ? ? ? 1_555 A ARG 79 N ? ? A MSE 2973 A ARG 2974 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A THR 95 C ? ? ? 1_555 A MSE 96 N ? ? A THR 2990 A MSE 2991 1_555 ? ? ? ? ? ? ? 1.325 ? covale6 covale ? ? A MSE 96 C ? ? ? 1_555 A GLU 97 N ? ? A MSE 2991 A GLU 2992 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A LEU 149 C ? ? ? 1_555 A MSE 150 N ? ? A LEU 3044 A MSE 3045 1_555 ? ? ? ? ? ? ? 1.323 ? covale8 covale ? ? A MSE 150 C ? ? ? 1_555 A LYS 151 N ? ? A MSE 3045 A LYS 3046 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 86 ? VAL A 91 ? VAL A 2981 VAL A 2986 A 2 TYR A 73 ? ARG A 79 ? TYR A 2968 ARG A 2974 A 3 GLN A 54 ? HIS A 68 ? GLN A 2949 HIS A 2963 A 4 GLU A 35 ? ASP A 49 ? GLU A 2930 ASP A 2944 A 5 LYS A 121 ? PHE A 129 ? LYS A 3016 PHE A 3024 A 6 ALA A 107 ? ASP A 114 ? ALA A 3002 ASP A 3009 A 7 LYS A 99 ? PRO A 100 ? LYS A 2994 PRO A 2995 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 87 ? O CYS A 2982 N MSE A 78 ? N MSE A 2973 A 2 3 O LEU A 77 ? O LEU A 2972 N LYS A 64 ? N LYS A 2959 A 3 4 O ARG A 58 ? O ARG A 2953 N LEU A 45 ? N LEU A 2940 A 4 5 N TYR A 46 ? N TYR A 2941 O ALA A 126 ? O ALA A 3021 A 5 6 O LEU A 125 ? O LEU A 3020 N TRP A 110 ? N TRP A 3005 A 6 7 O VAL A 109 ? O VAL A 3004 N LYS A 99 ? N LYS A 2994 # _atom_sites.entry_id 4L6E _atom_sites.fract_transf_matrix[1][1] 0.014392 _atom_sites.fract_transf_matrix[1][2] 0.008309 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016619 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006555 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 2896 ? ? ? A . n A 1 2 GLY 2 2897 ? ? ? A . n A 1 3 HIS 3 2898 ? ? ? A . n A 1 4 HIS 4 2899 ? ? ? A . n A 1 5 HIS 5 2900 ? ? ? A . n A 1 6 HIS 6 2901 ? ? ? A . n A 1 7 HIS 7 2902 ? ? ? A . n A 1 8 HIS 8 2903 ? ? ? A . n A 1 9 SER 9 2904 ? ? ? A . n A 1 10 HIS 10 2905 ? ? ? A . n A 1 11 MSE 11 2906 ? ? ? A . n A 1 12 ASN 12 2907 ? ? ? A . n A 1 13 GLU 13 2908 ? ? ? A . n A 1 14 ASP 14 2909 ? ? ? A . n A 1 15 ILE 15 2910 ? ? ? A . n A 1 16 HIS 16 2911 ? ? ? A . n A 1 17 PHE 17 2912 ? ? ? A . n A 1 18 GLU 18 2913 ? ? ? A . n A 1 19 PRO 19 2914 ? ? ? A . n A 1 20 ILE 20 2915 ? ? ? A . n A 1 21 VAL 21 2916 ? ? ? A . n A 1 22 SER 22 2917 ? ? ? A . n A 1 23 LEU 23 2918 ? ? ? A . n A 1 24 PRO 24 2919 ? ? ? A . n A 1 25 GLU 25 2920 ? ? ? A . n A 1 26 VAL 26 2921 ? ? ? A . n A 1 27 GLU 27 2922 ? ? ? A . n A 1 28 VAL 28 2923 ? ? ? A . n A 1 29 LYS 29 2924 ? ? ? A . n A 1 30 SER 30 2925 2925 SER ALA A . n A 1 31 GLY 31 2926 2926 GLY GLY A . n A 1 32 GLU 32 2927 2927 GLU GLU A . n A 1 33 GLU 33 2928 2928 GLU GLU A . n A 1 34 ASP 34 2929 2929 ASP ASP A . n A 1 35 GLU 35 2930 2930 GLU GLU A . n A 1 36 GLU 36 2931 2931 GLU GLU A . n A 1 37 ILE 37 2932 2932 ILE ILE A . n A 1 38 LEU 38 2933 2933 LEU LEU A . n A 1 39 PHE 39 2934 2934 PHE PHE A . n A 1 40 LYS 40 2935 2935 LYS LYS A . n A 1 41 GLU 41 2936 2936 GLU GLU A . n A 1 42 ARG 42 2937 2937 ARG ARG A . n A 1 43 ALA 43 2938 2938 ALA ALA A . n A 1 44 LYS 44 2939 2939 LYS LYS A . n A 1 45 LEU 45 2940 2940 LEU LEU A . n A 1 46 TYR 46 2941 2941 TYR TYR A . n A 1 47 ARG 47 2942 2942 ARG ARG A . n A 1 48 TRP 48 2943 2943 TRP TRP A . n A 1 49 ASP 49 2944 2944 ASP ASP A . n A 1 50 ARG 50 2945 2945 ARG ARG A . n A 1 51 ASP 51 2946 2946 ASP ASP A . n A 1 52 VAL 52 2947 2947 VAL VAL A . n A 1 53 SER 53 2948 2948 SER SER A . n A 1 54 GLN 54 2949 2949 GLN GLN A . n A 1 55 TRP 55 2950 2950 TRP TRP A . n A 1 56 LYS 56 2951 2951 LYS LYS A . n A 1 57 GLU 57 2952 2952 GLU GLU A . n A 1 58 ARG 58 2953 2953 ARG ARG A . n A 1 59 GLY 59 2954 2954 GLY GLY A . n A 1 60 VAL 60 2955 2955 VAL VAL A . n A 1 61 GLY 61 2956 2956 GLY GLY A . n A 1 62 ASP 62 2957 2957 ASP ASP A . n A 1 63 ILE 63 2958 2958 ILE ILE A . n A 1 64 LYS 64 2959 2959 LYS LYS A . n A 1 65 ILE 65 2960 2960 ILE ILE A . n A 1 66 LEU 66 2961 2961 LEU LEU A . n A 1 67 TRP 67 2962 2962 TRP TRP A . n A 1 68 HIS 68 2963 2963 HIS HIS A . n A 1 69 THR 69 2964 2964 THR THR A . n A 1 70 MSE 70 2965 2965 MSE MSE A . n A 1 71 LYS 71 2966 2966 LYS LYS A . n A 1 72 ASN 72 2967 2967 ASN ASN A . n A 1 73 TYR 73 2968 2968 TYR TYR A . n A 1 74 TYR 74 2969 2969 TYR TYR A . n A 1 75 ARG 75 2970 2970 ARG ARG A . n A 1 76 ILE 76 2971 2971 ILE ILE A . n A 1 77 LEU 77 2972 2972 LEU LEU A . n A 1 78 MSE 78 2973 2973 MSE MSE A . n A 1 79 ARG 79 2974 2974 ARG ARG A . n A 1 80 ARG 80 2975 2975 ARG ARG A . n A 1 81 ASP 81 2976 2976 ASP ASP A . n A 1 82 GLN 82 2977 2977 GLN GLN A . n A 1 83 VAL 83 2978 2978 VAL VAL A . n A 1 84 PHE 84 2979 2979 PHE PHE A . n A 1 85 LYS 85 2980 2980 LYS LYS A . n A 1 86 VAL 86 2981 2981 VAL VAL A . n A 1 87 CYS 87 2982 2982 CYS CYS A . n A 1 88 ALA 88 2983 2983 ALA ALA A . n A 1 89 ASN 89 2984 2984 ASN ASN A . n A 1 90 HIS 90 2985 2985 HIS HIS A . n A 1 91 VAL 91 2986 2986 VAL VAL A . n A 1 92 ILE 92 2987 2987 ILE ILE A . n A 1 93 THR 93 2988 2988 THR THR A . n A 1 94 LYS 94 2989 2989 LYS LYS A . n A 1 95 THR 95 2990 2990 THR THR A . n A 1 96 MSE 96 2991 2991 MSE MSE A . n A 1 97 GLU 97 2992 2992 GLU GLU A . n A 1 98 LEU 98 2993 2993 LEU LEU A . n A 1 99 LYS 99 2994 2994 LYS LYS A . n A 1 100 PRO 100 2995 2995 PRO PRO A . n A 1 101 LEU 101 2996 2996 LEU LEU A . n A 1 102 ASN 102 2997 2997 ASN ASN A . n A 1 103 VAL 103 2998 2998 VAL VAL A . n A 1 104 SER 104 2999 2999 SER SER A . n A 1 105 ASN 105 3000 3000 ASN ASN A . n A 1 106 ASN 106 3001 3001 ASN ASN A . n A 1 107 ALA 107 3002 3002 ALA ALA A . n A 1 108 LEU 108 3003 3003 LEU LEU A . n A 1 109 VAL 109 3004 3004 VAL VAL A . n A 1 110 TRP 110 3005 3005 TRP TRP A . n A 1 111 THR 111 3006 3006 THR THR A . n A 1 112 ALA 112 3007 3007 ALA ALA A . n A 1 113 SER 113 3008 3008 SER SER A . n A 1 114 ASP 114 3009 3009 ASP ASP A . n A 1 115 TYR 115 3010 3010 TYR TYR A . n A 1 116 ALA 116 3011 3011 ALA ALA A . n A 1 117 ASP 117 3012 3012 ASP ASP A . n A 1 118 GLY 118 3013 3013 GLY GLY A . n A 1 119 GLU 119 3014 3014 GLU GLU A . n A 1 120 ALA 120 3015 3015 ALA ALA A . n A 1 121 LYS 121 3016 3016 LYS LYS A . n A 1 122 VAL 122 3017 3017 VAL VAL A . n A 1 123 GLU 123 3018 3018 GLU GLU A . n A 1 124 GLN 124 3019 3019 GLN GLN A . n A 1 125 LEU 125 3020 3020 LEU LEU A . n A 1 126 ALA 126 3021 3021 ALA ALA A . n A 1 127 VAL 127 3022 3022 VAL VAL A . n A 1 128 ARG 128 3023 3023 ARG ARG A . n A 1 129 PHE 129 3024 3024 PHE PHE A . n A 1 130 LYS 130 3025 3025 LYS LYS A . n A 1 131 THR 131 3026 3026 THR THR A . n A 1 132 LYS 132 3027 3027 LYS LYS A . n A 1 133 GLU 133 3028 3028 GLU GLU A . n A 1 134 VAL 134 3029 3029 VAL VAL A . n A 1 135 ALA 135 3030 3030 ALA ALA A . n A 1 136 ASP 136 3031 3031 ASP ASP A . n A 1 137 CYS 137 3032 3032 CYS CYS A . n A 1 138 PHE 138 3033 3033 PHE PHE A . n A 1 139 LYS 139 3034 3034 LYS LYS A . n A 1 140 LYS 140 3035 3035 LYS LYS A . n A 1 141 THR 141 3036 3036 THR THR A . n A 1 142 PHE 142 3037 3037 PHE PHE A . n A 1 143 GLU 143 3038 3038 GLU GLU A . n A 1 144 GLU 144 3039 3039 GLU GLU A . n A 1 145 CYS 145 3040 3040 CYS CYS A . n A 1 146 GLN 146 3041 3041 GLN GLN A . n A 1 147 GLN 147 3042 3042 GLN GLN A . n A 1 148 ASN 148 3043 3043 ASN ASN A . n A 1 149 LEU 149 3044 3044 LEU LEU A . n A 1 150 MSE 150 3045 3045 MSE MSE A . n A 1 151 LYS 151 3046 3046 LYS LYS A . n A 1 152 LEU 152 3047 3047 LEU LEU A . n A 1 153 GLN 153 3048 3048 GLN GLN A . n A 1 154 LYS 154 3049 ? ? ? A . n A 1 155 GLY 155 3050 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 70 A MSE 2965 ? MET SELENOMETHIONINE 2 A MSE 78 A MSE 2973 ? MET SELENOMETHIONINE 3 A MSE 96 A MSE 2991 ? MET SELENOMETHIONINE 4 A MSE 150 A MSE 3045 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 3101 ? B HOH . 2 1 A HOH 3102 ? B HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-06-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 15.9328 _pdbx_refine_tls.origin_y 19.9245 _pdbx_refine_tls.origin_z 74.7614 _pdbx_refine_tls.T[1][1] 0.5428 _pdbx_refine_tls.T[2][2] 0.5568 _pdbx_refine_tls.T[3][3] 0.5299 _pdbx_refine_tls.T[1][2] 0.0261 _pdbx_refine_tls.T[1][3] 0.0425 _pdbx_refine_tls.T[2][3] 0.0132 _pdbx_refine_tls.L[1][1] 3.3531 _pdbx_refine_tls.L[2][2] 2.7499 _pdbx_refine_tls.L[3][3] 3.3176 _pdbx_refine_tls.L[1][2] -0.0572 _pdbx_refine_tls.L[1][3] -1.1558 _pdbx_refine_tls.L[2][3] -0.0227 _pdbx_refine_tls.S[1][1] -0.1624 _pdbx_refine_tls.S[1][2] -0.0488 _pdbx_refine_tls.S[1][3] -0.0195 _pdbx_refine_tls.S[2][1] 0.0909 _pdbx_refine_tls.S[2][2] 0.1125 _pdbx_refine_tls.S[2][3] 0.1239 _pdbx_refine_tls.S[3][1] -0.0410 _pdbx_refine_tls.S[3][2] 0.0267 _pdbx_refine_tls.S[3][3] -0.0000 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 AutoSol . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 2945 ? ? -85.41 30.77 2 1 ASP A 2946 ? ? -125.09 -74.74 3 1 VAL A 2947 ? ? -64.17 0.31 4 1 ASN A 2984 ? ? -162.81 109.94 5 1 ASN A 2997 ? ? 58.73 -144.15 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 2925 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id SER _pdbx_unobs_or_zero_occ_atoms.label_seq_id 30 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 2896 ? A MSE 1 2 1 Y 1 A GLY 2897 ? A GLY 2 3 1 Y 1 A HIS 2898 ? A HIS 3 4 1 Y 1 A HIS 2899 ? A HIS 4 5 1 Y 1 A HIS 2900 ? A HIS 5 6 1 Y 1 A HIS 2901 ? A HIS 6 7 1 Y 1 A HIS 2902 ? A HIS 7 8 1 Y 1 A HIS 2903 ? A HIS 8 9 1 Y 1 A SER 2904 ? A SER 9 10 1 Y 1 A HIS 2905 ? A HIS 10 11 1 Y 1 A MSE 2906 ? A MSE 11 12 1 Y 1 A ASN 2907 ? A ASN 12 13 1 Y 1 A GLU 2908 ? A GLU 13 14 1 Y 1 A ASP 2909 ? A ASP 14 15 1 Y 1 A ILE 2910 ? A ILE 15 16 1 Y 1 A HIS 2911 ? A HIS 16 17 1 Y 1 A PHE 2912 ? A PHE 17 18 1 Y 1 A GLU 2913 ? A GLU 18 19 1 Y 1 A PRO 2914 ? A PRO 19 20 1 Y 1 A ILE 2915 ? A ILE 20 21 1 Y 1 A VAL 2916 ? A VAL 21 22 1 Y 1 A SER 2917 ? A SER 22 23 1 Y 1 A LEU 2918 ? A LEU 23 24 1 Y 1 A PRO 2919 ? A PRO 24 25 1 Y 1 A GLU 2920 ? A GLU 25 26 1 Y 1 A VAL 2921 ? A VAL 26 27 1 Y 1 A GLU 2922 ? A GLU 27 28 1 Y 1 A VAL 2923 ? A VAL 28 29 1 Y 1 A LYS 2924 ? A LYS 29 30 1 Y 1 A LYS 3049 ? A LYS 154 31 1 Y 1 A GLY 3050 ? A GLY 155 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 3101 4000 HOH WAT A . B 2 HOH 2 3102 4001 HOH WAT A . B 2 HOH 3 3103 4002 HOH WAT A . B 2 HOH 4 3104 4003 HOH WAT A . B 2 HOH 5 3105 4004 HOH WAT A . B 2 HOH 6 3106 4005 HOH WAT A . B 2 HOH 7 3107 4006 HOH WAT A . B 2 HOH 8 3108 4007 HOH WAT A . B 2 HOH 9 3109 4008 HOH WAT A . B 2 HOH 10 3110 4009 HOH WAT A . B 2 HOH 11 3111 4011 HOH WAT A . B 2 HOH 12 3112 4012 HOH WAT A . B 2 HOH 13 3113 4013 HOH WAT A . B 2 HOH 14 3114 4014 HOH WAT A . B 2 HOH 15 3115 4015 HOH WAT A . B 2 HOH 16 3116 4016 HOH WAT A . B 2 HOH 17 3117 4019 HOH WAT A . B 2 HOH 18 3118 4020 HOH WAT A . B 2 HOH 19 3119 4021 HOH WAT A . B 2 HOH 20 3120 4022 HOH WAT A . B 2 HOH 21 3121 4023 HOH WAT A . B 2 HOH 22 3122 4024 HOH WAT A . B 2 HOH 23 3123 4026 HOH WAT A . B 2 HOH 24 3124 4027 HOH WAT A . B 2 HOH 25 3125 4028 HOH WAT A . B 2 HOH 26 3126 4030 HOH WAT A . B 2 HOH 27 3127 4031 HOH WAT A . B 2 HOH 28 3128 4032 HOH WAT A . B 2 HOH 29 3129 4035 HOH WAT A . B 2 HOH 30 3130 4037 HOH WAT A . B 2 HOH 31 3131 4039 HOH WAT A . B 2 HOH 32 3132 4041 HOH WAT A . B 2 HOH 33 3133 4043 HOH WAT A . B 2 HOH 34 3134 4044 HOH WAT A . B 2 HOH 35 3135 4045 HOH WAT A . B 2 HOH 36 3136 4046 HOH WAT A . B 2 HOH 37 3137 4047 HOH WAT A . #