data_4L9F # _entry.id 4L9F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4L9F RCSB RCSB080347 WWPDB D_1000080347 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4HH2 . unspecified PDB 4HH3 . unspecified PDB 4HH0 . unspecified PDB 4L9E . unspecified PDB 4L9G . unspecified # _pdbx_database_status.entry_id 4L9F _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-06-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Heintz, U.' 1 'Meinhart, A.' 2 'Schlichting, I.' 3 'Winkler, A.' 4 # _citation.id primary _citation.title 'Multi-PAS domain-mediated protein oligomerization of PpsR from Rhodobacter sphaeroides.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 70 _citation.page_first 863 _citation.page_last 876 _citation.year 2014 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24598755 _citation.pdbx_database_id_DOI 10.1107/S1399004713033634 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Heintz, U.' 1 primary 'Meinhart, A.' 2 primary 'Winkler, A.' 3 # _cell.length_a 50.610 _cell.length_b 50.610 _cell.length_c 163.530 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4L9F _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 4L9F _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, PpsR' 15647.906 1 ? ? 'UNP residues 123-257' ? 2 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GA(MSE)GIAEVQQQLVAAQLA(MSE)ERDYETQRE(MSE)ETRYRVVLDVSRDP(MSE)VLVS(MSE)STGRIVDLNSA AGLLLGGVRQDLLGAAIAQEFEGRRRGEF(MSE)ET(MSE)TNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLL CQIDPAD ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMGIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQE FEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPAD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MSE n 1 4 GLY n 1 5 ILE n 1 6 ALA n 1 7 GLU n 1 8 VAL n 1 9 GLN n 1 10 GLN n 1 11 GLN n 1 12 LEU n 1 13 VAL n 1 14 ALA n 1 15 ALA n 1 16 GLN n 1 17 LEU n 1 18 ALA n 1 19 MSE n 1 20 GLU n 1 21 ARG n 1 22 ASP n 1 23 TYR n 1 24 GLU n 1 25 THR n 1 26 GLN n 1 27 ARG n 1 28 GLU n 1 29 MSE n 1 30 GLU n 1 31 THR n 1 32 ARG n 1 33 TYR n 1 34 ARG n 1 35 VAL n 1 36 VAL n 1 37 LEU n 1 38 ASP n 1 39 VAL n 1 40 SER n 1 41 ARG n 1 42 ASP n 1 43 PRO n 1 44 MSE n 1 45 VAL n 1 46 LEU n 1 47 VAL n 1 48 SER n 1 49 MSE n 1 50 SER n 1 51 THR n 1 52 GLY n 1 53 ARG n 1 54 ILE n 1 55 VAL n 1 56 ASP n 1 57 LEU n 1 58 ASN n 1 59 SER n 1 60 ALA n 1 61 ALA n 1 62 GLY n 1 63 LEU n 1 64 LEU n 1 65 LEU n 1 66 GLY n 1 67 GLY n 1 68 VAL n 1 69 ARG n 1 70 GLN n 1 71 ASP n 1 72 LEU n 1 73 LEU n 1 74 GLY n 1 75 ALA n 1 76 ALA n 1 77 ILE n 1 78 ALA n 1 79 GLN n 1 80 GLU n 1 81 PHE n 1 82 GLU n 1 83 GLY n 1 84 ARG n 1 85 ARG n 1 86 ARG n 1 87 GLY n 1 88 GLU n 1 89 PHE n 1 90 MSE n 1 91 GLU n 1 92 THR n 1 93 MSE n 1 94 THR n 1 95 ASN n 1 96 LEU n 1 97 ALA n 1 98 ALA n 1 99 THR n 1 100 GLU n 1 101 SER n 1 102 ALA n 1 103 ALA n 1 104 PRO n 1 105 VAL n 1 106 GLU n 1 107 VAL n 1 108 LEU n 1 109 ALA n 1 110 ARG n 1 111 ARG n 1 112 SER n 1 113 GLN n 1 114 LYS n 1 115 ARG n 1 116 LEU n 1 117 LEU n 1 118 VAL n 1 119 VAL n 1 120 PRO n 1 121 ARG n 1 122 VAL n 1 123 PHE n 1 124 ARG n 1 125 ALA n 1 126 ALA n 1 127 GLY n 1 128 GLU n 1 129 ARG n 1 130 LEU n 1 131 LEU n 1 132 LEU n 1 133 CYS n 1 134 GLN n 1 135 ILE n 1 136 ASP n 1 137 PRO n 1 138 ALA n 1 139 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ppsR, RHOS4_18870, RSP_0282' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodobacter sphaeroides' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272943 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETM11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3J179_RHOS4 _struct_ref.pdbx_db_accession Q3J179 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGR RRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPAD ; _struct_ref.pdbx_align_begin 123 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4L9F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q3J179 _struct_ref_seq.db_align_beg 123 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 257 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 123 _struct_ref_seq.pdbx_auth_seq_align_end 257 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4L9F GLY A 1 ? UNP Q3J179 ? ? 'EXPRESSION TAG' 119 1 1 4L9F ALA A 2 ? UNP Q3J179 ? ? 'EXPRESSION TAG' 120 2 1 4L9F MSE A 3 ? UNP Q3J179 ? ? 'EXPRESSION TAG' 121 3 1 4L9F GLY A 4 ? UNP Q3J179 ? ? 'EXPRESSION TAG' 122 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4L9F _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;3% (w/v) PEG 4000, 0.2 M magnesium chloride, 0.1 M 2-(N-morpholino)ethanesulfonic acid, 5 mM dithioerythritol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-05-04 _diffrn_detector.details 'Dynamically bendable mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA # _reflns.entry_id 4L9F _reflns.d_resolution_high 2.500 _reflns.number_obs 4783 _reflns.pdbx_netI_over_sigmaI 26.870 _reflns.percent_possible_obs 100.000 _reflns.B_iso_Wilson_estimate 39.379 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.pdbx_redundancy 40.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.500 2.600 34236 ? 887 0.770 6.430 ? ? ? ? ? 99.800 1 1 2.600 2.700 30138 ? 767 0.650 7.900 ? ? ? ? ? 100.000 2 1 2.700 2.800 26927 ? 682 0.521 9.780 ? ? ? ? ? 100.000 3 1 2.800 3.000 45392 ? 1071 0.408 12.700 ? ? ? ? ? 99.800 4 1 3.000 4.000 113095 ? 2712 0.164 26.810 ? ? ? ? ? 100.000 5 1 4.000 6.000 57142 ? 1394 0.073 53.260 ? ? ? ? ? 100.000 6 1 6.000 10.000 19145 ? 467 0.062 59.840 ? ? ? ? ? 100.000 7 1 10.000 50 4997 ? 128 0.038 85.410 ? ? ? ? ? 100.000 8 1 # _refine.entry_id 4L9F _refine.ls_d_res_high 2.5000 _refine.ls_d_res_low 42.3 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9600 _refine.ls_number_reflns_obs 4783 _refine.ls_number_reflns_all 4783 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.1954 _refine.ls_R_factor_R_work 0.1930 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2373 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0200 _refine.ls_number_reflns_R_free 240 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 41.3306 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 134.700 _refine.B_iso_min 16.310 _refine.pdbx_overall_phase_error 20.8000 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 861 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 883 _refine_hist.d_res_high 2.5000 _refine_hist.d_res_low 42.3 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 867 0.009 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1165 1.192 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 139 0.070 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 152 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 339 14.131 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.50 3.1500 2 100.0000 2189 . 0.1843 0.2526 . 116 . 2305 . . 'X-RAY DIFFRACTION' 3.1500 42.3 2 100.0000 2354 . 0.1964 0.2314 . 124 . 2478 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4L9F _struct.title 'Structure of a SeMet derivative of PpsR Q-PAS1 from Rb. sphaeroides' _struct.pdbx_descriptor 'Transcriptional regulator, PpsR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4L9F _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'PAS domain, Per-Arnt-Sim, oligomerization, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 25 ? SER A 40 ? THR A 143 SER A 158 1 ? 16 HELX_P HELX_P2 2 ASN A 58 ? GLY A 66 ? ASN A 176 GLY A 184 1 ? 9 HELX_P HELX_P3 3 VAL A 68 ? LEU A 73 ? VAL A 186 LEU A 191 1 ? 6 HELX_P HELX_P4 4 ALA A 76 ? PHE A 81 ? ALA A 194 PHE A 199 5 ? 6 HELX_P HELX_P5 5 ARG A 85 ? ALA A 97 ? ARG A 203 ALA A 215 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 28 C ? ? ? 1_555 A MSE 29 N ? ? A GLU 146 A MSE 147 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 29 C ? ? ? 1_555 A GLU 30 N ? ? A MSE 147 A GLU 148 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A PRO 43 C ? ? ? 1_555 A MSE 44 N ? ? A PRO 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 44 C ? ? ? 1_555 A VAL 45 N ? ? A MSE 162 A VAL 163 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A SER 48 C ? ? ? 1_555 A MSE 49 N ? ? A SER 166 A MSE 167 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 49 C ? ? ? 1_555 A SER 50 N ? ? A MSE 167 A SER 168 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale ? ? A PHE 89 C ? ? ? 1_555 A MSE 90 N ? ? A PHE 207 A MSE 208 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 90 C ? ? ? 1_555 A GLU 91 N ? ? A MSE 208 A GLU 209 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A THR 92 C ? ? ? 1_555 A MSE 93 N ? ? A THR 210 A MSE 211 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? A MSE 93 C ? ? ? 1_555 A THR 94 N ? ? A MSE 211 A THR 212 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 54 ? LEU A 57 ? ILE A 172 LEU A 175 A 2 MSE A 44 ? SER A 48 ? MSE A 162 SER A 166 A 3 ARG A 129 ? PRO A 137 ? ARG A 247 PRO A 255 A 4 ARG A 115 ? ARG A 124 ? ARG A 233 ARG A 242 A 5 VAL A 105 ? LEU A 108 ? VAL A 223 LEU A 226 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 56 ? O ASP A 174 N LEU A 46 ? N LEU A 164 A 2 3 N VAL A 45 ? N VAL A 163 O CYS A 133 ? O CYS A 251 A 3 4 O ASP A 136 ? O ASP A 254 N LEU A 117 ? N LEU A 235 A 4 5 O LEU A 116 ? O LEU A 234 N VAL A 107 ? N VAL A 225 # _atom_sites.entry_id 4L9F _atom_sites.fract_transf_matrix[1][1] 0.019759 _atom_sites.fract_transf_matrix[1][2] 0.011408 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022816 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006115 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 119 ? ? ? A . n A 1 2 ALA 2 120 ? ? ? A . n A 1 3 MSE 3 121 ? ? ? A . n A 1 4 GLY 4 122 ? ? ? A . n A 1 5 ILE 5 123 ? ? ? A . n A 1 6 ALA 6 124 ? ? ? A . n A 1 7 GLU 7 125 ? ? ? A . n A 1 8 VAL 8 126 ? ? ? A . n A 1 9 GLN 9 127 ? ? ? A . n A 1 10 GLN 10 128 ? ? ? A . n A 1 11 GLN 11 129 ? ? ? A . n A 1 12 LEU 12 130 ? ? ? A . n A 1 13 VAL 13 131 ? ? ? A . n A 1 14 ALA 14 132 ? ? ? A . n A 1 15 ALA 15 133 ? ? ? A . n A 1 16 GLN 16 134 ? ? ? A . n A 1 17 LEU 17 135 ? ? ? A . n A 1 18 ALA 18 136 ? ? ? A . n A 1 19 MSE 19 137 ? ? ? A . n A 1 20 GLU 20 138 ? ? ? A . n A 1 21 ARG 21 139 ? ? ? A . n A 1 22 ASP 22 140 ? ? ? A . n A 1 23 TYR 23 141 ? ? ? A . n A 1 24 GLU 24 142 ? ? ? A . n A 1 25 THR 25 143 143 THR THR A . n A 1 26 GLN 26 144 144 GLN GLN A . n A 1 27 ARG 27 145 145 ARG ARG A . n A 1 28 GLU 28 146 146 GLU GLU A . n A 1 29 MSE 29 147 147 MSE MSE A . n A 1 30 GLU 30 148 148 GLU GLU A . n A 1 31 THR 31 149 149 THR THR A . n A 1 32 ARG 32 150 150 ARG ARG A . n A 1 33 TYR 33 151 151 TYR TYR A . n A 1 34 ARG 34 152 152 ARG ARG A . n A 1 35 VAL 35 153 153 VAL VAL A . n A 1 36 VAL 36 154 154 VAL VAL A . n A 1 37 LEU 37 155 155 LEU LEU A . n A 1 38 ASP 38 156 156 ASP ASP A . n A 1 39 VAL 39 157 157 VAL VAL A . n A 1 40 SER 40 158 158 SER SER A . n A 1 41 ARG 41 159 159 ARG ARG A . n A 1 42 ASP 42 160 160 ASP ASP A . n A 1 43 PRO 43 161 161 PRO PRO A . n A 1 44 MSE 44 162 162 MSE MSE A . n A 1 45 VAL 45 163 163 VAL VAL A . n A 1 46 LEU 46 164 164 LEU LEU A . n A 1 47 VAL 47 165 165 VAL VAL A . n A 1 48 SER 48 166 166 SER SER A . n A 1 49 MSE 49 167 167 MSE MSE A . n A 1 50 SER 50 168 168 SER SER A . n A 1 51 THR 51 169 169 THR THR A . n A 1 52 GLY 52 170 170 GLY GLY A . n A 1 53 ARG 53 171 171 ARG ARG A . n A 1 54 ILE 54 172 172 ILE ILE A . n A 1 55 VAL 55 173 173 VAL VAL A . n A 1 56 ASP 56 174 174 ASP ASP A . n A 1 57 LEU 57 175 175 LEU LEU A . n A 1 58 ASN 58 176 176 ASN ASN A . n A 1 59 SER 59 177 177 SER SER A . n A 1 60 ALA 60 178 178 ALA ALA A . n A 1 61 ALA 61 179 179 ALA ALA A . n A 1 62 GLY 62 180 180 GLY GLY A . n A 1 63 LEU 63 181 181 LEU LEU A . n A 1 64 LEU 64 182 182 LEU LEU A . n A 1 65 LEU 65 183 183 LEU LEU A . n A 1 66 GLY 66 184 184 GLY GLY A . n A 1 67 GLY 67 185 185 GLY GLY A . n A 1 68 VAL 68 186 186 VAL VAL A . n A 1 69 ARG 69 187 187 ARG ARG A . n A 1 70 GLN 70 188 188 GLN GLN A . n A 1 71 ASP 71 189 189 ASP ASP A . n A 1 72 LEU 72 190 190 LEU LEU A . n A 1 73 LEU 73 191 191 LEU LEU A . n A 1 74 GLY 74 192 192 GLY GLY A . n A 1 75 ALA 75 193 193 ALA ALA A . n A 1 76 ALA 76 194 194 ALA ALA A . n A 1 77 ILE 77 195 195 ILE ILE A . n A 1 78 ALA 78 196 196 ALA ALA A . n A 1 79 GLN 79 197 197 GLN GLN A . n A 1 80 GLU 80 198 198 GLU GLU A . n A 1 81 PHE 81 199 199 PHE PHE A . n A 1 82 GLU 82 200 200 GLU GLU A . n A 1 83 GLY 83 201 201 GLY GLY A . n A 1 84 ARG 84 202 202 ARG ARG A . n A 1 85 ARG 85 203 203 ARG ARG A . n A 1 86 ARG 86 204 204 ARG ARG A . n A 1 87 GLY 87 205 205 GLY GLY A . n A 1 88 GLU 88 206 206 GLU GLU A . n A 1 89 PHE 89 207 207 PHE PHE A . n A 1 90 MSE 90 208 208 MSE MSE A . n A 1 91 GLU 91 209 209 GLU GLU A . n A 1 92 THR 92 210 210 THR THR A . n A 1 93 MSE 93 211 211 MSE MSE A . n A 1 94 THR 94 212 212 THR THR A . n A 1 95 ASN 95 213 213 ASN ASN A . n A 1 96 LEU 96 214 214 LEU LEU A . n A 1 97 ALA 97 215 215 ALA ALA A . n A 1 98 ALA 98 216 216 ALA ALA A . n A 1 99 THR 99 217 217 THR THR A . n A 1 100 GLU 100 218 ? ? ? A . n A 1 101 SER 101 219 ? ? ? A . n A 1 102 ALA 102 220 ? ? ? A . n A 1 103 ALA 103 221 ? ? ? A . n A 1 104 PRO 104 222 222 PRO PRO A . n A 1 105 VAL 105 223 223 VAL VAL A . n A 1 106 GLU 106 224 224 GLU GLU A . n A 1 107 VAL 107 225 225 VAL VAL A . n A 1 108 LEU 108 226 226 LEU LEU A . n A 1 109 ALA 109 227 227 ALA ALA A . n A 1 110 ARG 110 228 228 ARG ARG A . n A 1 111 ARG 111 229 229 ARG ARG A . n A 1 112 SER 112 230 230 SER SER A . n A 1 113 GLN 113 231 231 GLN GLN A . n A 1 114 LYS 114 232 232 LYS LYS A . n A 1 115 ARG 115 233 233 ARG ARG A . n A 1 116 LEU 116 234 234 LEU LEU A . n A 1 117 LEU 117 235 235 LEU LEU A . n A 1 118 VAL 118 236 236 VAL VAL A . n A 1 119 VAL 119 237 237 VAL VAL A . n A 1 120 PRO 120 238 238 PRO PRO A . n A 1 121 ARG 121 239 239 ARG ARG A . n A 1 122 VAL 122 240 240 VAL VAL A . n A 1 123 PHE 123 241 241 PHE PHE A . n A 1 124 ARG 124 242 242 ARG ARG A . n A 1 125 ALA 125 243 243 ALA ALA A . n A 1 126 ALA 126 244 244 ALA ALA A . n A 1 127 GLY 127 245 245 GLY GLY A . n A 1 128 GLU 128 246 246 GLU GLU A . n A 1 129 ARG 129 247 247 ARG ARG A . n A 1 130 LEU 130 248 248 LEU LEU A . n A 1 131 LEU 131 249 249 LEU LEU A . n A 1 132 LEU 132 250 250 LEU LEU A . n A 1 133 CYS 133 251 251 CYS CYS A . n A 1 134 GLN 134 252 252 GLN GLN A . n A 1 135 ILE 135 253 253 ILE ILE A . n A 1 136 ASP 136 254 254 ASP ASP A . n A 1 137 PRO 137 255 255 PRO PRO A . n A 1 138 ALA 138 256 256 ALA ALA A . n A 1 139 ASP 139 257 257 ASP ASP A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 29 A MSE 147 ? MET SELENOMETHIONINE 2 A MSE 44 A MSE 162 ? MET SELENOMETHIONINE 3 A MSE 49 A MSE 167 ? MET SELENOMETHIONINE 4 A MSE 90 A MSE 208 ? MET SELENOMETHIONINE 5 A MSE 93 A MSE 211 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2590 ? 1 MORE -20 ? 1 'SSA (A^2)' 11130 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 163.5300000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 321 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-12 2 'Structure model' 1 1 2014-04-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.500 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 8108 _diffrn_reflns.pdbx_Rmerge_I_obs 0.148 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 331072 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -2.9877 -1.8435 85.4120 0.3478 0.4977 0.5631 -0.0136 0.1072 0.0043 5.1118 7.1410 4.1753 1.4676 1.4921 3.2513 0.4157 -0.5349 0.1048 -0.4579 -0.3011 1.6552 0.4722 0.2110 -1.4521 'X-RAY DIFFRACTION' 2 ? refined 8.6738 15.2885 82.7423 0.2374 0.2754 0.2986 0.0069 0.0273 0.0054 4.7183 4.0218 3.1742 -0.2310 0.3063 -0.5049 0.0690 0.0318 -0.1020 0.3335 0.2314 0.1846 -0.1371 -0.1937 -0.1387 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 143 through 157) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 158 through 257 ) ; ? ? ? ? ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 PHENIX-AutoSol . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 119 ? A GLY 1 2 1 Y 1 A ALA 120 ? A ALA 2 3 1 Y 1 A MSE 121 ? A MSE 3 4 1 Y 1 A GLY 122 ? A GLY 4 5 1 Y 1 A ILE 123 ? A ILE 5 6 1 Y 1 A ALA 124 ? A ALA 6 7 1 Y 1 A GLU 125 ? A GLU 7 8 1 Y 1 A VAL 126 ? A VAL 8 9 1 Y 1 A GLN 127 ? A GLN 9 10 1 Y 1 A GLN 128 ? A GLN 10 11 1 Y 1 A GLN 129 ? A GLN 11 12 1 Y 1 A LEU 130 ? A LEU 12 13 1 Y 1 A VAL 131 ? A VAL 13 14 1 Y 1 A ALA 132 ? A ALA 14 15 1 Y 1 A ALA 133 ? A ALA 15 16 1 Y 1 A GLN 134 ? A GLN 16 17 1 Y 1 A LEU 135 ? A LEU 17 18 1 Y 1 A ALA 136 ? A ALA 18 19 1 Y 1 A MSE 137 ? A MSE 19 20 1 Y 1 A GLU 138 ? A GLU 20 21 1 Y 1 A ARG 139 ? A ARG 21 22 1 Y 1 A ASP 140 ? A ASP 22 23 1 Y 1 A TYR 141 ? A TYR 23 24 1 Y 1 A GLU 142 ? A GLU 24 25 1 Y 1 A GLU 218 ? A GLU 100 26 1 Y 1 A SER 219 ? A SER 101 27 1 Y 1 A ALA 220 ? A ALA 102 28 1 Y 1 A ALA 221 ? A ALA 103 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 1 HOH HOH A . B 2 HOH 2 302 2 HOH HOH A . B 2 HOH 3 303 3 HOH HOH A . B 2 HOH 4 304 4 HOH HOH A . B 2 HOH 5 305 6 HOH HOH A . B 2 HOH 6 306 13 HOH HOH A . B 2 HOH 7 307 14 HOH HOH A . B 2 HOH 8 308 16 HOH HOH A . B 2 HOH 9 309 18 HOH HOH A . B 2 HOH 10 310 20 HOH HOH A . B 2 HOH 11 311 21 HOH HOH A . B 2 HOH 12 312 23 HOH HOH A . B 2 HOH 13 313 25 HOH HOH A . B 2 HOH 14 314 27 HOH HOH A . B 2 HOH 15 315 28 HOH HOH A . B 2 HOH 16 316 30 HOH HOH A . B 2 HOH 17 317 41 HOH HOH A . B 2 HOH 18 318 42 HOH HOH A . B 2 HOH 19 319 43 HOH HOH A . B 2 HOH 20 320 44 HOH HOH A . B 2 HOH 21 321 45 HOH HOH A . B 2 HOH 22 322 48 HOH HOH A . #