data_4NCE # _entry.id 4NCE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NCE pdb_00004nce 10.2210/pdb4nce/pdb RCSB RCSB083025 ? ? WWPDB D_1000083025 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4NCM _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NCE _pdbx_database_status.recvd_initial_deposition_date 2013-10-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Jacobs, M.D.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Discovery of a Novel, First-in-Class, Orally Bioavailable Azaindole Inhibitor (VX-787) of Influenza PB2.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 57 _citation.page_first 6668 _citation.page_last 6678 _citation.year 2014 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25019388 _citation.pdbx_database_id_DOI 10.1021/jm5007275 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clark, M.P.' 1 ? primary 'Ledeboer, M.W.' 2 ? primary 'Davies, I.' 3 ? primary 'Byrn, R.A.' 4 ? primary 'Jones, S.M.' 5 ? primary 'Perola, E.' 6 ? primary 'Tsai, A.' 7 ? primary 'Jacobs, M.' 8 ? primary 'Nti-Addae, K.' 9 ? primary 'Bandarage, U.K.' 10 ? primary 'Boyd, M.J.' 11 ? primary 'Bethiel, R.S.' 12 ? primary 'Court, J.J.' 13 ? primary 'Deng, H.' 14 ? primary 'Duffy, J.P.' 15 ? primary 'Dorsch, W.A.' 16 ? primary 'Farmer, L.J.' 17 ? primary 'Gao, H.' 18 ? primary 'Gu, W.' 19 ? primary 'Jackson, K.' 20 ? primary 'Jacobs, D.H.' 21 ? primary 'Kennedy, J.M.' 22 ? primary 'Ledford, B.' 23 ? primary 'Liang, J.' 24 ? primary 'Maltais, F.' 25 ? primary 'Murcko, M.' 26 ? primary 'Wang, T.' 27 ? primary 'Wannamaker, M.W.' 28 ? primary 'Bennett, H.B.' 29 ? primary 'Leeman, J.R.' 30 ? primary 'McNeil, C.' 31 ? primary 'Taylor, W.P.' 32 ? primary 'Memmott, C.' 33 ? primary 'Jiang, M.' 34 ? primary 'Rijnbrand, R.' 35 ? primary 'Bral, C.' 36 ? primary 'Germann, U.' 37 ? primary 'Nezami, A.' 38 ? primary 'Zhang, Y.' 39 ? primary 'Salituro, F.G.' 40 ? primary 'Bennani, Y.L.' 41 ? primary 'Charifson, P.S.' 42 ? # _cell.entry_id 4NCE _cell.length_a 81.440 _cell.length_b 81.440 _cell.length_c 54.560 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NCE _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Polymerase basic protein 2' 19174.324 1 ? R389K 'CAP-BINDING DOMAIN' ? 2 non-polymer syn "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 539.223 1 ? ? ? ? 3 non-polymer syn '9,10-dioxo-9,10-dihydroanthracene-2,6-disulfonic acid' 368.339 2 ? ? ? ? 4 water nat water 18.015 43 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA-directed RNA polymerase subunit P3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMRISSSFSFGGFTFKRTSGSSIKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGKDEQSI AEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEHIDNVMGMVGVLPDMTPSTEMS MRGIRVSKM ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMRISSSFSFGGFTFKRTSGSSIKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGKDEQSI AEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEHIDNVMGMVGVLPDMTPSTEMS MRGIRVSKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 ARG n 1 5 ILE n 1 6 SER n 1 7 SER n 1 8 SER n 1 9 PHE n 1 10 SER n 1 11 PHE n 1 12 GLY n 1 13 GLY n 1 14 PHE n 1 15 THR n 1 16 PHE n 1 17 LYS n 1 18 ARG n 1 19 THR n 1 20 SER n 1 21 GLY n 1 22 SER n 1 23 SER n 1 24 ILE n 1 25 LYS n 1 26 ARG n 1 27 GLU n 1 28 GLU n 1 29 GLU n 1 30 VAL n 1 31 LEU n 1 32 THR n 1 33 GLY n 1 34 ASN n 1 35 LEU n 1 36 GLN n 1 37 THR n 1 38 LEU n 1 39 LYS n 1 40 ILE n 1 41 ARG n 1 42 VAL n 1 43 HIS n 1 44 GLU n 1 45 GLY n 1 46 TYR n 1 47 GLU n 1 48 GLU n 1 49 PHE n 1 50 THR n 1 51 MET n 1 52 VAL n 1 53 GLY n 1 54 LYS n 1 55 ARG n 1 56 ALA n 1 57 THR n 1 58 ALA n 1 59 ILE n 1 60 LEU n 1 61 ARG n 1 62 LYS n 1 63 ALA n 1 64 THR n 1 65 ARG n 1 66 ARG n 1 67 LEU n 1 68 VAL n 1 69 GLN n 1 70 LEU n 1 71 ILE n 1 72 VAL n 1 73 SER n 1 74 GLY n 1 75 LYS n 1 76 ASP n 1 77 GLU n 1 78 GLN n 1 79 SER n 1 80 ILE n 1 81 ALA n 1 82 GLU n 1 83 ALA n 1 84 ILE n 1 85 ILE n 1 86 VAL n 1 87 ALA n 1 88 MET n 1 89 VAL n 1 90 PHE n 1 91 SER n 1 92 GLN n 1 93 GLU n 1 94 ASP n 1 95 CYS n 1 96 MET n 1 97 ILE n 1 98 LYS n 1 99 ALA n 1 100 VAL n 1 101 ARG n 1 102 GLY n 1 103 ASP n 1 104 LEU n 1 105 ASN n 1 106 PHE n 1 107 VAL n 1 108 ASN n 1 109 ARG n 1 110 ALA n 1 111 ASN n 1 112 GLN n 1 113 ARG n 1 114 LEU n 1 115 ASN n 1 116 PRO n 1 117 MET n 1 118 HIS n 1 119 GLN n 1 120 LEU n 1 121 LEU n 1 122 ARG n 1 123 HIS n 1 124 PHE n 1 125 GLN n 1 126 LYS n 1 127 ASP n 1 128 ALA n 1 129 LYS n 1 130 VAL n 1 131 LEU n 1 132 PHE n 1 133 GLN n 1 134 ASN n 1 135 TRP n 1 136 GLY n 1 137 ILE n 1 138 GLU n 1 139 HIS n 1 140 ILE n 1 141 ASP n 1 142 ASN n 1 143 VAL n 1 144 MET n 1 145 GLY n 1 146 MET n 1 147 VAL n 1 148 GLY n 1 149 VAL n 1 150 LEU n 1 151 PRO n 1 152 ASP n 1 153 MET n 1 154 THR n 1 155 PRO n 1 156 SER n 1 157 THR n 1 158 GLU n 1 159 MET n 1 160 SER n 1 161 MET n 1 162 ARG n 1 163 GLY n 1 164 ILE n 1 165 ARG n 1 166 VAL n 1 167 SER n 1 168 LYS n 1 169 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PB2, polymerase basic protein' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'strain A/Victoria/3/1975 H3N2' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Influenza A virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 392809 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) RIPL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details 'with an N-terminal TEV cleavable 6*His tag' _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PB2_I75A3 _struct_ref.pdbx_db_accession P31345 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LRISSSFSFGGFTFKRTSGSSIKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGRDEQSIAE AIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEHIDNVMGMVGVLPDMTPSTEMSMR GIRVSKM ; _struct_ref.pdbx_align_begin 317 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NCE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P31345 _struct_ref_seq.db_align_beg 317 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 483 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 317 _struct_ref_seq.pdbx_auth_seq_align_end 483 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NCE GLY A 1 ? UNP P31345 ? ? 'expression tag' 315 1 1 4NCE HIS A 2 ? UNP P31345 ? ? 'expression tag' 316 2 1 4NCE MET A 3 ? UNP P31345 LEU 317 conflict 317 3 1 4NCE LYS A 75 ? UNP P31345 ARG 389 conflict 389 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 11H non-polymer . '9,10-dioxo-9,10-dihydroanthracene-2,6-disulfonic acid' ? 'C14 H8 O8 S2' 368.339 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MGT non-polymer n "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" ? 'C11 H20 N5 O14 P3' 539.223 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NCE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_percent_sol 54.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.7 _exptl_crystal_grow.pdbx_details ;0.7 uL of protein solution (9.7 mg/mL protein, 50 mM Tris buffer pH 8, 200 mM sodium chloride, 2 mM dithiothreitol, 5 mM m7GTP) was mixed with 0.35 uL Hampton Research Silver Bullet screening reagent #36. This mixture was combined with 0.35 uL of well solution (approximately 1.3 M sodium formate, 100 mM sodium citrate buffer pH 4.6, 5 mM dithiothreitol) and suspended over 1 mL of well solution, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-08-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4NCE _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 29.62 _reflns.number_obs 9272 _reflns.number_all 9272 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.134 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.45 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4NCE _refine.ls_number_reflns_obs 8830 _refine.ls_number_reflns_all 9272 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.62 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.90 _refine.ls_R_factor_obs 0.19625 _refine.ls_R_factor_all 0.19625 _refine.ls_R_factor_R_work 0.19460 _refine.ls_R_factor_R_free 0.22929 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 442 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 25.577 _refine.aniso_B[1][1] 0.85 _refine.aniso_B[2][2] 0.85 _refine.aniso_B[3][3] -1.27 _refine.aniso_B[1][2] 0.42 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2VQZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.310 _refine.pdbx_overall_ESU_R_Free 0.216 _refine.overall_SU_ML 0.167 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.390 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1290 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 81 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 1414 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 29.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.011 0.022 ? 1421 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.386 2.023 ? 1930 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.455 5.000 ? 167 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 36.349 23.333 ? 63 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 18.258 15.000 ? 262 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 21.365 15.000 ? 13 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.104 0.200 ? 206 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.020 ? 1071 ? 'X-RAY DIFFRACTION' r_mcbond_it 0.444 1.500 ? 817 ? 'X-RAY DIFFRACTION' r_mcangle_it 0.893 2.000 ? 1321 ? 'X-RAY DIFFRACTION' r_scbond_it 1.596 3.000 ? 604 ? 'X-RAY DIFFRACTION' r_scangle_it 2.620 4.500 ? 607 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 644 _refine_ls_shell.R_factor_R_work 0.266 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.361 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NCE _struct.title 'Influenza polymerase basic protein 2 (PB2) bound to 7-methyl-GTP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NCE _struct_keywords.pdbx_keywords 'TRANSCRIPTION/TRANSCRIPTION INHIBITOR' _struct_keywords.text 'influenza virus, cap-binding domain, TRANSCRIPTION-TRANSCRIPTION INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 76 ? SER A 91 ? ASP A 390 SER A 405 1 ? 16 HELX_P HELX_P2 2 GLU A 93 ? ALA A 99 ? GLU A 407 ALA A 413 1 ? 7 HELX_P HELX_P3 3 ASN A 108 ? GLN A 112 ? ASN A 422 GLN A 426 5 ? 5 HELX_P HELX_P4 4 ASN A 115 ? ASP A 127 ? ASN A 429 ASP A 441 1 ? 13 HELX_P HELX_P5 5 ALA A 128 ? GLY A 136 ? ALA A 442 GLY A 450 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 8 ? PHE A 11 ? SER A 322 PHE A 325 A 2 PHE A 14 ? GLY A 21 ? PHE A 328 GLY A 335 A 3 GLU A 47 ? VAL A 52 ? GLU A 361 VAL A 366 A 4 ALA A 56 ? ALA A 63 ? ALA A 370 ALA A 377 A 5 ARG A 66 ? GLY A 74 ? ARG A 380 GLY A 388 A 6 ILE A 164 ? SER A 167 ? ILE A 478 SER A 481 A 7 MET A 146 ? VAL A 149 ? MET A 460 VAL A 463 A 8 PRO A 155 ? SER A 156 ? PRO A 469 SER A 470 B 1 ILE A 24 ? LEU A 31 ? ILE A 338 LEU A 345 B 2 THR A 37 ? GLU A 44 ? THR A 351 GLU A 358 C 1 ILE A 137 ? HIS A 139 ? ILE A 451 HIS A 453 C 2 MET A 159 ? MET A 161 ? MET A 473 MET A 475 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 9 ? N PHE A 323 O PHE A 16 ? O PHE A 330 A 2 3 N THR A 15 ? N THR A 329 O VAL A 52 ? O VAL A 366 A 3 4 N GLU A 47 ? N GLU A 361 O LYS A 62 ? O LYS A 376 A 4 5 N THR A 57 ? N THR A 371 O SER A 73 ? O SER A 387 A 5 6 N VAL A 72 ? N VAL A 386 O SER A 167 ? O SER A 481 A 6 7 O VAL A 166 ? O VAL A 480 N VAL A 147 ? N VAL A 461 A 7 8 N GLY A 148 ? N GLY A 462 O SER A 156 ? O SER A 470 B 1 2 N ILE A 24 ? N ILE A 338 O GLU A 44 ? O GLU A 358 C 1 2 N GLU A 138 ? N GLU A 452 O SER A 160 ? O SER A 474 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MGT 501 ? 13 'BINDING SITE FOR RESIDUE MGT A 501' AC2 Software A 11H 502 ? 14 'BINDING SITE FOR RESIDUE 11H A 502' AC3 Software A 11H 503 ? 8 'BINDING SITE FOR RESIDUE 11H A 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 PHE A 9 ? PHE A 323 . ? 1_555 ? 2 AC1 13 ARG A 41 ? ARG A 355 . ? 1_555 ? 3 AC1 13 HIS A 43 ? HIS A 357 . ? 1_555 ? 4 AC1 13 GLU A 47 ? GLU A 361 . ? 1_555 ? 5 AC1 13 PHE A 49 ? PHE A 363 . ? 1_555 ? 6 AC1 13 LYS A 62 ? LYS A 376 . ? 1_555 ? 7 AC1 13 PHE A 90 ? PHE A 404 . ? 1_555 ? 8 AC1 13 GLN A 92 ? GLN A 406 . ? 1_555 ? 9 AC1 13 ASN A 115 ? ASN A 429 . ? 1_555 ? 10 AC1 13 HIS A 118 ? HIS A 432 . ? 1_555 ? 11 AC1 13 HOH E . ? HOH A 622 . ? 1_555 ? 12 AC1 13 HOH E . ? HOH A 623 . ? 1_555 ? 13 AC1 13 HOH E . ? HOH A 632 . ? 1_555 ? 14 AC2 14 ARG A 26 ? ARG A 340 . ? 3_445 ? 15 AC2 14 GLU A 28 ? GLU A 342 . ? 3_445 ? 16 AC2 14 GLU A 29 ? GLU A 343 . ? 3_445 ? 17 AC2 14 GLN A 36 ? GLN A 350 . ? 1_555 ? 18 AC2 14 THR A 37 ? THR A 351 . ? 1_555 ? 19 AC2 14 LEU A 38 ? LEU A 352 . ? 1_555 ? 20 AC2 14 LYS A 39 ? LYS A 353 . ? 1_555 ? 21 AC2 14 LYS A 75 ? LYS A 389 . ? 6_554 ? 22 AC2 14 PHE A 106 ? PHE A 420 . ? 1_555 ? 23 AC2 14 VAL A 107 ? VAL A 421 . ? 1_555 ? 24 AC2 14 PRO A 116 ? PRO A 430 . ? 1_555 ? 25 AC2 14 LYS A 168 ? LYS A 482 . ? 5_445 ? 26 AC2 14 11H D . ? 11H A 503 . ? 5_445 ? 27 AC2 14 HOH E . ? HOH A 639 . ? 1_555 ? 28 AC3 8 LYS A 75 ? LYS A 389 . ? 2_564 ? 29 AC3 8 ARG A 109 ? ARG A 423 . ? 4_454 ? 30 AC3 8 MET A 144 ? MET A 458 . ? 1_555 ? 31 AC3 8 GLY A 145 ? GLY A 459 . ? 1_555 ? 32 AC3 8 MET A 169 ? MET A 483 . ? 1_555 ? 33 AC3 8 MET A 169 ? MET A 483 . ? 2_564 ? 34 AC3 8 11H C . ? 11H A 502 . ? 6_564 ? 35 AC3 8 HOH E . ? HOH A 612 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NCE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NCE _atom_sites.fract_transf_matrix[1][1] 0.012279 _atom_sites.fract_transf_matrix[1][2] 0.007089 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014179 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018328 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 315 ? ? ? A . n A 1 2 HIS 2 316 ? ? ? A . n A 1 3 MET 3 317 ? ? ? A . n A 1 4 ARG 4 318 ? ? ? A . n A 1 5 ILE 5 319 ? ? ? A . n A 1 6 SER 6 320 ? ? ? A . n A 1 7 SER 7 321 321 SER SER A . n A 1 8 SER 8 322 322 SER SER A . n A 1 9 PHE 9 323 323 PHE PHE A . n A 1 10 SER 10 324 324 SER SER A . n A 1 11 PHE 11 325 325 PHE PHE A . n A 1 12 GLY 12 326 326 GLY GLY A . n A 1 13 GLY 13 327 327 GLY GLY A . n A 1 14 PHE 14 328 328 PHE PHE A . n A 1 15 THR 15 329 329 THR THR A . n A 1 16 PHE 16 330 330 PHE PHE A . n A 1 17 LYS 17 331 331 LYS LYS A . n A 1 18 ARG 18 332 332 ARG ARG A . n A 1 19 THR 19 333 333 THR THR A . n A 1 20 SER 20 334 334 SER SER A . n A 1 21 GLY 21 335 335 GLY GLY A . n A 1 22 SER 22 336 336 SER SER A . n A 1 23 SER 23 337 337 SER SER A . n A 1 24 ILE 24 338 338 ILE ILE A . n A 1 25 LYS 25 339 339 LYS LYS A . n A 1 26 ARG 26 340 340 ARG ARG A . n A 1 27 GLU 27 341 341 GLU GLU A . n A 1 28 GLU 28 342 342 GLU GLU A . n A 1 29 GLU 29 343 343 GLU GLU A . n A 1 30 VAL 30 344 344 VAL VAL A . n A 1 31 LEU 31 345 345 LEU LEU A . n A 1 32 THR 32 346 346 THR THR A . n A 1 33 GLY 33 347 347 GLY GLY A . n A 1 34 ASN 34 348 348 ASN ASN A . n A 1 35 LEU 35 349 349 LEU LEU A . n A 1 36 GLN 36 350 350 GLN GLN A . n A 1 37 THR 37 351 351 THR THR A . n A 1 38 LEU 38 352 352 LEU LEU A . n A 1 39 LYS 39 353 353 LYS LYS A . n A 1 40 ILE 40 354 354 ILE ILE A . n A 1 41 ARG 41 355 355 ARG ARG A . n A 1 42 VAL 42 356 356 VAL VAL A . n A 1 43 HIS 43 357 357 HIS HIS A . n A 1 44 GLU 44 358 358 GLU GLU A . n A 1 45 GLY 45 359 359 GLY GLY A . n A 1 46 TYR 46 360 360 TYR TYR A . n A 1 47 GLU 47 361 361 GLU GLU A . n A 1 48 GLU 48 362 362 GLU GLU A . n A 1 49 PHE 49 363 363 PHE PHE A . n A 1 50 THR 50 364 364 THR THR A . n A 1 51 MET 51 365 365 MET MET A . n A 1 52 VAL 52 366 366 VAL VAL A . n A 1 53 GLY 53 367 367 GLY GLY A . n A 1 54 LYS 54 368 368 LYS LYS A . n A 1 55 ARG 55 369 369 ARG ARG A . n A 1 56 ALA 56 370 370 ALA ALA A . n A 1 57 THR 57 371 371 THR THR A . n A 1 58 ALA 58 372 372 ALA ALA A . n A 1 59 ILE 59 373 373 ILE ILE A . n A 1 60 LEU 60 374 374 LEU LEU A . n A 1 61 ARG 61 375 375 ARG ARG A . n A 1 62 LYS 62 376 376 LYS LYS A . n A 1 63 ALA 63 377 377 ALA ALA A . n A 1 64 THR 64 378 378 THR THR A . n A 1 65 ARG 65 379 379 ARG ARG A . n A 1 66 ARG 66 380 380 ARG ARG A . n A 1 67 LEU 67 381 381 LEU LEU A . n A 1 68 VAL 68 382 382 VAL VAL A . n A 1 69 GLN 69 383 383 GLN GLN A . n A 1 70 LEU 70 384 384 LEU LEU A . n A 1 71 ILE 71 385 385 ILE ILE A . n A 1 72 VAL 72 386 386 VAL VAL A . n A 1 73 SER 73 387 387 SER SER A . n A 1 74 GLY 74 388 388 GLY GLY A . n A 1 75 LYS 75 389 389 LYS LYS A . n A 1 76 ASP 76 390 390 ASP ASP A . n A 1 77 GLU 77 391 391 GLU GLU A . n A 1 78 GLN 78 392 392 GLN GLN A . n A 1 79 SER 79 393 393 SER SER A . n A 1 80 ILE 80 394 394 ILE ILE A . n A 1 81 ALA 81 395 395 ALA ALA A . n A 1 82 GLU 82 396 396 GLU GLU A . n A 1 83 ALA 83 397 397 ALA ALA A . n A 1 84 ILE 84 398 398 ILE ILE A . n A 1 85 ILE 85 399 399 ILE ILE A . n A 1 86 VAL 86 400 400 VAL VAL A . n A 1 87 ALA 87 401 401 ALA ALA A . n A 1 88 MET 88 402 402 MET MET A . n A 1 89 VAL 89 403 403 VAL VAL A . n A 1 90 PHE 90 404 404 PHE PHE A . n A 1 91 SER 91 405 405 SER SER A . n A 1 92 GLN 92 406 406 GLN GLN A . n A 1 93 GLU 93 407 407 GLU GLU A . n A 1 94 ASP 94 408 408 ASP ASP A . n A 1 95 CYS 95 409 409 CYS CYS A . n A 1 96 MET 96 410 410 MET MET A . n A 1 97 ILE 97 411 411 ILE ILE A . n A 1 98 LYS 98 412 412 LYS LYS A . n A 1 99 ALA 99 413 413 ALA ALA A . n A 1 100 VAL 100 414 414 VAL VAL A . n A 1 101 ARG 101 415 415 ARG ARG A . n A 1 102 GLY 102 416 416 GLY GLY A . n A 1 103 ASP 103 417 417 ASP ASP A . n A 1 104 LEU 104 418 418 LEU LEU A . n A 1 105 ASN 105 419 419 ASN ASN A . n A 1 106 PHE 106 420 420 PHE PHE A . n A 1 107 VAL 107 421 421 VAL VAL A . n A 1 108 ASN 108 422 422 ASN ASN A . n A 1 109 ARG 109 423 423 ARG ARG A . n A 1 110 ALA 110 424 424 ALA ALA A . n A 1 111 ASN 111 425 425 ASN ASN A . n A 1 112 GLN 112 426 426 GLN GLN A . n A 1 113 ARG 113 427 427 ARG ARG A . n A 1 114 LEU 114 428 428 LEU LEU A . n A 1 115 ASN 115 429 429 ASN ASN A . n A 1 116 PRO 116 430 430 PRO PRO A . n A 1 117 MET 117 431 431 MET MET A . n A 1 118 HIS 118 432 432 HIS HIS A . n A 1 119 GLN 119 433 433 GLN GLN A . n A 1 120 LEU 120 434 434 LEU LEU A . n A 1 121 LEU 121 435 435 LEU LEU A . n A 1 122 ARG 122 436 436 ARG ARG A . n A 1 123 HIS 123 437 437 HIS HIS A . n A 1 124 PHE 124 438 438 PHE PHE A . n A 1 125 GLN 125 439 439 GLN GLN A . n A 1 126 LYS 126 440 440 LYS LYS A . n A 1 127 ASP 127 441 441 ASP ASP A . n A 1 128 ALA 128 442 442 ALA ALA A . n A 1 129 LYS 129 443 443 LYS LYS A . n A 1 130 VAL 130 444 444 VAL VAL A . n A 1 131 LEU 131 445 445 LEU LEU A . n A 1 132 PHE 132 446 446 PHE PHE A . n A 1 133 GLN 133 447 447 GLN GLN A . n A 1 134 ASN 134 448 448 ASN ASN A . n A 1 135 TRP 135 449 449 TRP TRP A . n A 1 136 GLY 136 450 450 GLY GLY A . n A 1 137 ILE 137 451 451 ILE ILE A . n A 1 138 GLU 138 452 452 GLU GLU A . n A 1 139 HIS 139 453 453 HIS HIS A . n A 1 140 ILE 140 454 454 ILE ILE A . n A 1 141 ASP 141 455 455 ASP ASP A . n A 1 142 ASN 142 456 456 ASN ASN A . n A 1 143 VAL 143 457 457 VAL VAL A . n A 1 144 MET 144 458 458 MET MET A . n A 1 145 GLY 145 459 459 GLY GLY A . n A 1 146 MET 146 460 460 MET MET A . n A 1 147 VAL 147 461 461 VAL VAL A . n A 1 148 GLY 148 462 462 GLY GLY A . n A 1 149 VAL 149 463 463 VAL VAL A . n A 1 150 LEU 150 464 464 LEU LEU A . n A 1 151 PRO 151 465 465 PRO PRO A . n A 1 152 ASP 152 466 466 ASP ASP A . n A 1 153 MET 153 467 467 MET MET A . n A 1 154 THR 154 468 468 THR THR A . n A 1 155 PRO 155 469 469 PRO PRO A . n A 1 156 SER 156 470 470 SER SER A . n A 1 157 THR 157 471 471 THR THR A . n A 1 158 GLU 158 472 472 GLU GLU A . n A 1 159 MET 159 473 473 MET MET A . n A 1 160 SER 160 474 474 SER SER A . n A 1 161 MET 161 475 475 MET MET A . n A 1 162 ARG 162 476 476 ARG ARG A . n A 1 163 GLY 163 477 477 GLY GLY A . n A 1 164 ILE 164 478 478 ILE ILE A . n A 1 165 ARG 165 479 479 ARG ARG A . n A 1 166 VAL 166 480 480 VAL VAL A . n A 1 167 SER 167 481 481 SER SER A . n A 1 168 LYS 168 482 482 LYS LYS A . n A 1 169 MET 169 483 483 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGT 1 501 1 MGT 456 A . C 3 11H 1 502 1 11H 636 A . D 3 11H 1 503 1 11H 636 A . E 4 HOH 1 601 1 HOH HOH A . E 4 HOH 2 602 2 HOH HOH A . E 4 HOH 3 603 3 HOH HOH A . E 4 HOH 4 604 4 HOH HOH A . E 4 HOH 5 605 5 HOH HOH A . E 4 HOH 6 606 6 HOH HOH A . E 4 HOH 7 607 7 HOH HOH A . E 4 HOH 8 608 8 HOH HOH A . E 4 HOH 9 609 9 HOH HOH A . E 4 HOH 10 610 10 HOH HOH A . E 4 HOH 11 611 11 HOH HOH A . E 4 HOH 12 612 12 HOH HOH A . E 4 HOH 13 613 13 HOH HOH A . E 4 HOH 14 614 14 HOH HOH A . E 4 HOH 15 615 15 HOH HOH A . E 4 HOH 16 616 16 HOH HOH A . E 4 HOH 17 617 17 HOH HOH A . E 4 HOH 18 618 18 HOH HOH A . E 4 HOH 19 619 19 HOH HOH A . E 4 HOH 20 620 20 HOH HOH A . E 4 HOH 21 621 21 HOH HOH A . E 4 HOH 22 622 22 HOH HOH A . E 4 HOH 23 623 23 HOH HOH A . E 4 HOH 24 624 24 HOH HOH A . E 4 HOH 25 625 25 HOH HOH A . E 4 HOH 26 626 26 HOH HOH A . E 4 HOH 27 627 27 HOH HOH A . E 4 HOH 28 628 28 HOH HOH A . E 4 HOH 29 629 29 HOH HOH A . E 4 HOH 30 630 30 HOH HOH A . E 4 HOH 31 631 31 HOH HOH A . E 4 HOH 32 632 32 HOH HOH A . E 4 HOH 33 633 33 HOH HOH A . E 4 HOH 34 634 34 HOH HOH A . E 4 HOH 35 635 35 HOH HOH A . E 4 HOH 36 636 36 HOH HOH A . E 4 HOH 37 637 37 HOH HOH A . E 4 HOH 38 638 38 HOH HOH A . E 4 HOH 39 639 39 HOH HOH A . E 4 HOH 40 640 40 HOH HOH A . E 4 HOH 41 641 41 HOH HOH A . E 4 HOH 42 642 42 HOH HOH A . E 4 HOH 43 643 43 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 1 1 2014-08-06 3 'Structure model' 1 2 2014-08-27 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -41.3469 -2.0196 2.0527 0.0567 0.0391 0.0190 0.0022 0.0114 0.0026 0.7742 2.2721 0.8735 -0.0601 0.2290 0.4193 -0.0037 0.0366 -0.0838 -0.0202 -0.0280 0.2357 0.0520 -0.1488 0.0317 'X-RAY DIFFRACTION' 2 ? refined -32.3094 1.1409 5.2695 0.0408 0.0511 0.0392 0.0074 -0.0066 -0.0383 1.5276 5.8249 2.2642 0.6595 -0.4394 -1.4337 -0.0713 0.0297 0.0922 -0.0791 0.0099 -0.3705 -0.0975 0.0517 0.0614 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 321 ? ? A 416 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 502 ? ? A 502 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 417 ? ? A 483 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.5.0109 ? 2 d*TREK 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 342 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 369 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_454 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 390 ? ? -172.46 -178.03 2 1 ASP A 441 ? ? -164.13 116.07 3 1 ASN A 456 ? ? -76.57 25.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 315 ? A GLY 1 2 1 Y 1 A HIS 316 ? A HIS 2 3 1 Y 1 A MET 317 ? A MET 3 4 1 Y 1 A ARG 318 ? A ARG 4 5 1 Y 1 A ILE 319 ? A ILE 5 6 1 Y 1 A SER 320 ? A SER 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 11H O01 O N N 1 11H S02 S N N 2 11H O03 O N N 3 11H O04 O N N 4 11H C05 C Y N 5 11H C06 C Y N 6 11H C07 C Y N 7 11H C08 C Y N 8 11H C09 C N N 9 11H O10 O N N 10 11H C11 C Y N 11 11H C12 C Y N 12 11H C13 C Y N 13 11H C14 C Y N 14 11H C15 C Y N 15 11H C16 C Y N 16 11H S17 S N N 17 11H O18 O N N 18 11H O19 O N N 19 11H O20 O N N 20 11H C21 C N N 21 11H O22 O N N 22 11H C23 C Y N 23 11H C24 C Y N 24 11H H1 H N N 25 11H H2 H N N 26 11H H3 H N N 27 11H H4 H N N 28 11H H5 H N N 29 11H H6 H N N 30 11H H7 H N N 31 11H H8 H N N 32 ALA N N N N 33 ALA CA C N S 34 ALA C C N N 35 ALA O O N N 36 ALA CB C N N 37 ALA OXT O N N 38 ALA H H N N 39 ALA H2 H N N 40 ALA HA H N N 41 ALA HB1 H N N 42 ALA HB2 H N N 43 ALA HB3 H N N 44 ALA HXT H N N 45 ARG N N N N 46 ARG CA C N S 47 ARG C C N N 48 ARG O O N N 49 ARG CB C N N 50 ARG CG C N N 51 ARG CD C N N 52 ARG NE N N N 53 ARG CZ C N N 54 ARG NH1 N N N 55 ARG NH2 N N N 56 ARG OXT O N N 57 ARG H H N N 58 ARG H2 H N N 59 ARG HA H N N 60 ARG HB2 H N N 61 ARG HB3 H N N 62 ARG HG2 H N N 63 ARG HG3 H N N 64 ARG HD2 H N N 65 ARG HD3 H N N 66 ARG HE H N N 67 ARG HH11 H N N 68 ARG HH12 H N N 69 ARG HH21 H N N 70 ARG HH22 H N N 71 ARG HXT H N N 72 ASN N N N N 73 ASN CA C N S 74 ASN C C N N 75 ASN O O N N 76 ASN CB C N N 77 ASN CG C N N 78 ASN OD1 O N N 79 ASN ND2 N N N 80 ASN OXT O N N 81 ASN H H N N 82 ASN H2 H N N 83 ASN HA H N N 84 ASN HB2 H N N 85 ASN HB3 H N N 86 ASN HD21 H N N 87 ASN HD22 H N N 88 ASN HXT H N N 89 ASP N N N N 90 ASP CA C N S 91 ASP C C N N 92 ASP O O N N 93 ASP CB C N N 94 ASP CG C N N 95 ASP OD1 O N N 96 ASP OD2 O N N 97 ASP OXT O N N 98 ASP H H N N 99 ASP H2 H N N 100 ASP HA H N N 101 ASP HB2 H N N 102 ASP HB3 H N N 103 ASP HD2 H N N 104 ASP HXT H N N 105 CYS N N N N 106 CYS CA C N R 107 CYS C C N N 108 CYS O O N N 109 CYS CB C N N 110 CYS SG S N N 111 CYS OXT O N N 112 CYS H H N N 113 CYS H2 H N N 114 CYS HA H N N 115 CYS HB2 H N N 116 CYS HB3 H N N 117 CYS HG H N N 118 CYS HXT H N N 119 GLN N N N N 120 GLN CA C N S 121 GLN C C N N 122 GLN O O N N 123 GLN CB C N N 124 GLN CG C N N 125 GLN CD C N N 126 GLN OE1 O N N 127 GLN NE2 N N N 128 GLN OXT O N N 129 GLN H H N N 130 GLN H2 H N N 131 GLN HA H N N 132 GLN HB2 H N N 133 GLN HB3 H N N 134 GLN HG2 H N N 135 GLN HG3 H N N 136 GLN HE21 H N N 137 GLN HE22 H N N 138 GLN HXT H N N 139 GLU N N N N 140 GLU CA C N S 141 GLU C C N N 142 GLU O O N N 143 GLU CB C N N 144 GLU CG C N N 145 GLU CD C N N 146 GLU OE1 O N N 147 GLU OE2 O N N 148 GLU OXT O N N 149 GLU H H N N 150 GLU H2 H N N 151 GLU HA H N N 152 GLU HB2 H N N 153 GLU HB3 H N N 154 GLU HG2 H N N 155 GLU HG3 H N N 156 GLU HE2 H N N 157 GLU HXT H N N 158 GLY N N N N 159 GLY CA C N N 160 GLY C C N N 161 GLY O O N N 162 GLY OXT O N N 163 GLY H H N N 164 GLY H2 H N N 165 GLY HA2 H N N 166 GLY HA3 H N N 167 GLY HXT H N N 168 HIS N N N N 169 HIS CA C N S 170 HIS C C N N 171 HIS O O N N 172 HIS CB C N N 173 HIS CG C Y N 174 HIS ND1 N Y N 175 HIS CD2 C Y N 176 HIS CE1 C Y N 177 HIS NE2 N Y N 178 HIS OXT O N N 179 HIS H H N N 180 HIS H2 H N N 181 HIS HA H N N 182 HIS HB2 H N N 183 HIS HB3 H N N 184 HIS HD1 H N N 185 HIS HD2 H N N 186 HIS HE1 H N N 187 HIS HE2 H N N 188 HIS HXT H N N 189 HOH O O N N 190 HOH H1 H N N 191 HOH H2 H N N 192 ILE N N N N 193 ILE CA C N S 194 ILE C C N N 195 ILE O O N N 196 ILE CB C N S 197 ILE CG1 C N N 198 ILE CG2 C N N 199 ILE CD1 C N N 200 ILE OXT O N N 201 ILE H H N N 202 ILE H2 H N N 203 ILE HA H N N 204 ILE HB H N N 205 ILE HG12 H N N 206 ILE HG13 H N N 207 ILE HG21 H N N 208 ILE HG22 H N N 209 ILE HG23 H N N 210 ILE HD11 H N N 211 ILE HD12 H N N 212 ILE HD13 H N N 213 ILE HXT H N N 214 LEU N N N N 215 LEU CA C N S 216 LEU C C N N 217 LEU O O N N 218 LEU CB C N N 219 LEU CG C N N 220 LEU CD1 C N N 221 LEU CD2 C N N 222 LEU OXT O N N 223 LEU H H N N 224 LEU H2 H N N 225 LEU HA H N N 226 LEU HB2 H N N 227 LEU HB3 H N N 228 LEU HG H N N 229 LEU HD11 H N N 230 LEU HD12 H N N 231 LEU HD13 H N N 232 LEU HD21 H N N 233 LEU HD22 H N N 234 LEU HD23 H N N 235 LEU HXT H N N 236 LYS N N N N 237 LYS CA C N S 238 LYS C C N N 239 LYS O O N N 240 LYS CB C N N 241 LYS CG C N N 242 LYS CD C N N 243 LYS CE C N N 244 LYS NZ N N N 245 LYS OXT O N N 246 LYS H H N N 247 LYS H2 H N N 248 LYS HA H N N 249 LYS HB2 H N N 250 LYS HB3 H N N 251 LYS HG2 H N N 252 LYS HG3 H N N 253 LYS HD2 H N N 254 LYS HD3 H N N 255 LYS HE2 H N N 256 LYS HE3 H N N 257 LYS HZ1 H N N 258 LYS HZ2 H N N 259 LYS HZ3 H N N 260 LYS HXT H N N 261 MET N N N N 262 MET CA C N S 263 MET C C N N 264 MET O O N N 265 MET CB C N N 266 MET CG C N N 267 MET SD S N N 268 MET CE C N N 269 MET OXT O N N 270 MET H H N N 271 MET H2 H N N 272 MET HA H N N 273 MET HB2 H N N 274 MET HB3 H N N 275 MET HG2 H N N 276 MET HG3 H N N 277 MET HE1 H N N 278 MET HE2 H N N 279 MET HE3 H N N 280 MET HXT H N N 281 MGT PG P N N 282 MGT O1G O N N 283 MGT O2G O N N 284 MGT O3G O N N 285 MGT O3B O N N 286 MGT PB P N R 287 MGT O1B O N N 288 MGT O2B O N N 289 MGT O3A O N N 290 MGT PA P N S 291 MGT O1A O N N 292 MGT O2A O N N 293 MGT "O5'" O N N 294 MGT "C5'" C N N 295 MGT "C4'" C N R 296 MGT "O4'" O N N 297 MGT "C3'" C N S 298 MGT "O3'" O N N 299 MGT "C2'" C N R 300 MGT "O2'" O N N 301 MGT "C1'" C N R 302 MGT N9 N N N 303 MGT C8 C N N 304 MGT N7 N N N 305 MGT CM7 C N N 306 MGT C5 C N N 307 MGT C6 C N N 308 MGT O6 O N N 309 MGT N1 N N N 310 MGT C2 C N N 311 MGT N2 N N N 312 MGT N3 N N N 313 MGT C4 C N N 314 MGT HOG2 H N N 315 MGT HOG3 H N N 316 MGT HOB2 H N N 317 MGT HOA2 H N N 318 MGT "H5'1" H N N 319 MGT "H5'2" H N N 320 MGT "H4'" H N N 321 MGT "H3'" H N N 322 MGT "HO3'" H N N 323 MGT "H2'" H N N 324 MGT "HO2'" H N N 325 MGT "H1'" H N N 326 MGT H81 H N N 327 MGT H82 H N N 328 MGT HM71 H N N 329 MGT HM72 H N N 330 MGT HM73 H N N 331 MGT HN1 H N N 332 MGT HN21 H N N 333 MGT HN22 H N N 334 PHE N N N N 335 PHE CA C N S 336 PHE C C N N 337 PHE O O N N 338 PHE CB C N N 339 PHE CG C Y N 340 PHE CD1 C Y N 341 PHE CD2 C Y N 342 PHE CE1 C Y N 343 PHE CE2 C Y N 344 PHE CZ C Y N 345 PHE OXT O N N 346 PHE H H N N 347 PHE H2 H N N 348 PHE HA H N N 349 PHE HB2 H N N 350 PHE HB3 H N N 351 PHE HD1 H N N 352 PHE HD2 H N N 353 PHE HE1 H N N 354 PHE HE2 H N N 355 PHE HZ H N N 356 PHE HXT H N N 357 PRO N N N N 358 PRO CA C N S 359 PRO C C N N 360 PRO O O N N 361 PRO CB C N N 362 PRO CG C N N 363 PRO CD C N N 364 PRO OXT O N N 365 PRO H H N N 366 PRO HA H N N 367 PRO HB2 H N N 368 PRO HB3 H N N 369 PRO HG2 H N N 370 PRO HG3 H N N 371 PRO HD2 H N N 372 PRO HD3 H N N 373 PRO HXT H N N 374 SER N N N N 375 SER CA C N S 376 SER C C N N 377 SER O O N N 378 SER CB C N N 379 SER OG O N N 380 SER OXT O N N 381 SER H H N N 382 SER H2 H N N 383 SER HA H N N 384 SER HB2 H N N 385 SER HB3 H N N 386 SER HG H N N 387 SER HXT H N N 388 THR N N N N 389 THR CA C N S 390 THR C C N N 391 THR O O N N 392 THR CB C N R 393 THR OG1 O N N 394 THR CG2 C N N 395 THR OXT O N N 396 THR H H N N 397 THR H2 H N N 398 THR HA H N N 399 THR HB H N N 400 THR HG1 H N N 401 THR HG21 H N N 402 THR HG22 H N N 403 THR HG23 H N N 404 THR HXT H N N 405 TRP N N N N 406 TRP CA C N S 407 TRP C C N N 408 TRP O O N N 409 TRP CB C N N 410 TRP CG C Y N 411 TRP CD1 C Y N 412 TRP CD2 C Y N 413 TRP NE1 N Y N 414 TRP CE2 C Y N 415 TRP CE3 C Y N 416 TRP CZ2 C Y N 417 TRP CZ3 C Y N 418 TRP CH2 C Y N 419 TRP OXT O N N 420 TRP H H N N 421 TRP H2 H N N 422 TRP HA H N N 423 TRP HB2 H N N 424 TRP HB3 H N N 425 TRP HD1 H N N 426 TRP HE1 H N N 427 TRP HE3 H N N 428 TRP HZ2 H N N 429 TRP HZ3 H N N 430 TRP HH2 H N N 431 TRP HXT H N N 432 TYR N N N N 433 TYR CA C N S 434 TYR C C N N 435 TYR O O N N 436 TYR CB C N N 437 TYR CG C Y N 438 TYR CD1 C Y N 439 TYR CD2 C Y N 440 TYR CE1 C Y N 441 TYR CE2 C Y N 442 TYR CZ C Y N 443 TYR OH O N N 444 TYR OXT O N N 445 TYR H H N N 446 TYR H2 H N N 447 TYR HA H N N 448 TYR HB2 H N N 449 TYR HB3 H N N 450 TYR HD1 H N N 451 TYR HD2 H N N 452 TYR HE1 H N N 453 TYR HE2 H N N 454 TYR HH H N N 455 TYR HXT H N N 456 VAL N N N N 457 VAL CA C N S 458 VAL C C N N 459 VAL O O N N 460 VAL CB C N N 461 VAL CG1 C N N 462 VAL CG2 C N N 463 VAL OXT O N N 464 VAL H H N N 465 VAL H2 H N N 466 VAL HA H N N 467 VAL HB H N N 468 VAL HG11 H N N 469 VAL HG12 H N N 470 VAL HG13 H N N 471 VAL HG21 H N N 472 VAL HG22 H N N 473 VAL HG23 H N N 474 VAL HXT H N N 475 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 11H O20 S17 doub N N 1 11H O18 S17 doub N N 2 11H C14 C13 doub Y N 3 11H C14 C15 sing Y N 4 11H S17 C15 sing N N 5 11H S17 O19 sing N N 6 11H C13 C12 sing Y N 7 11H C15 C16 doub Y N 8 11H O22 C21 doub N N 9 11H C12 C21 sing N N 10 11H C12 C11 doub Y N 11 11H C16 C11 sing Y N 12 11H C21 C23 sing N N 13 11H C11 C09 sing N N 14 11H C23 C24 doub Y N 15 11H C23 C08 sing Y N 16 11H C09 C08 sing N N 17 11H C09 O10 doub N N 18 11H C24 C05 sing Y N 19 11H C08 C07 doub Y N 20 11H O03 S02 doub N N 21 11H C05 S02 sing N N 22 11H C05 C06 doub Y N 23 11H C07 C06 sing Y N 24 11H S02 O01 doub N N 25 11H S02 O04 sing N N 26 11H C06 H1 sing N N 27 11H C07 H2 sing N N 28 11H C13 H3 sing N N 29 11H C14 H4 sing N N 30 11H C16 H5 sing N N 31 11H C24 H6 sing N N 32 11H O04 H7 sing N N 33 11H O19 H8 sing N N 34 ALA N CA sing N N 35 ALA N H sing N N 36 ALA N H2 sing N N 37 ALA CA C sing N N 38 ALA CA CB sing N N 39 ALA CA HA sing N N 40 ALA C O doub N N 41 ALA C OXT sing N N 42 ALA CB HB1 sing N N 43 ALA CB HB2 sing N N 44 ALA CB HB3 sing N N 45 ALA OXT HXT sing N N 46 ARG N CA sing N N 47 ARG N H sing N N 48 ARG N H2 sing N N 49 ARG CA C sing N N 50 ARG CA CB sing N N 51 ARG CA HA sing N N 52 ARG C O doub N N 53 ARG C OXT sing N N 54 ARG CB CG sing N N 55 ARG CB HB2 sing N N 56 ARG CB HB3 sing N N 57 ARG CG CD sing N N 58 ARG CG HG2 sing N N 59 ARG CG HG3 sing N N 60 ARG CD NE sing N N 61 ARG CD HD2 sing N N 62 ARG CD HD3 sing N N 63 ARG NE CZ sing N N 64 ARG NE HE sing N N 65 ARG CZ NH1 sing N N 66 ARG CZ NH2 doub N N 67 ARG NH1 HH11 sing N N 68 ARG NH1 HH12 sing N N 69 ARG NH2 HH21 sing N N 70 ARG NH2 HH22 sing N N 71 ARG OXT HXT sing N N 72 ASN N CA sing N N 73 ASN N H sing N N 74 ASN N H2 sing N N 75 ASN CA C sing N N 76 ASN CA CB sing N N 77 ASN CA HA sing N N 78 ASN C O doub N N 79 ASN C OXT sing N N 80 ASN CB CG sing N N 81 ASN CB HB2 sing N N 82 ASN CB HB3 sing N N 83 ASN CG OD1 doub N N 84 ASN CG ND2 sing N N 85 ASN ND2 HD21 sing N N 86 ASN ND2 HD22 sing N N 87 ASN OXT HXT sing N N 88 ASP N CA sing N N 89 ASP N H sing N N 90 ASP N H2 sing N N 91 ASP CA C sing N N 92 ASP CA CB sing N N 93 ASP CA HA sing N N 94 ASP C O doub N N 95 ASP C OXT sing N N 96 ASP CB CG sing N N 97 ASP CB HB2 sing N N 98 ASP CB HB3 sing N N 99 ASP CG OD1 doub N N 100 ASP CG OD2 sing N N 101 ASP OD2 HD2 sing N N 102 ASP OXT HXT sing N N 103 CYS N CA sing N N 104 CYS N H sing N N 105 CYS N H2 sing N N 106 CYS CA C sing N N 107 CYS CA CB sing N N 108 CYS CA HA sing N N 109 CYS C O doub N N 110 CYS C OXT sing N N 111 CYS CB SG sing N N 112 CYS CB HB2 sing N N 113 CYS CB HB3 sing N N 114 CYS SG HG sing N N 115 CYS OXT HXT sing N N 116 GLN N CA sing N N 117 GLN N H sing N N 118 GLN N H2 sing N N 119 GLN CA C sing N N 120 GLN CA CB sing N N 121 GLN CA HA sing N N 122 GLN C O doub N N 123 GLN C OXT sing N N 124 GLN CB CG sing N N 125 GLN CB HB2 sing N N 126 GLN CB HB3 sing N N 127 GLN CG CD sing N N 128 GLN CG HG2 sing N N 129 GLN CG HG3 sing N N 130 GLN CD OE1 doub N N 131 GLN CD NE2 sing N N 132 GLN NE2 HE21 sing N N 133 GLN NE2 HE22 sing N N 134 GLN OXT HXT sing N N 135 GLU N CA sing N N 136 GLU N H sing N N 137 GLU N H2 sing N N 138 GLU CA C sing N N 139 GLU CA CB sing N N 140 GLU CA HA sing N N 141 GLU C O doub N N 142 GLU C OXT sing N N 143 GLU CB CG sing N N 144 GLU CB HB2 sing N N 145 GLU CB HB3 sing N N 146 GLU CG CD sing N N 147 GLU CG HG2 sing N N 148 GLU CG HG3 sing N N 149 GLU CD OE1 doub N N 150 GLU CD OE2 sing N N 151 GLU OE2 HE2 sing N N 152 GLU OXT HXT sing N N 153 GLY N CA sing N N 154 GLY N H sing N N 155 GLY N H2 sing N N 156 GLY CA C sing N N 157 GLY CA HA2 sing N N 158 GLY CA HA3 sing N N 159 GLY C O doub N N 160 GLY C OXT sing N N 161 GLY OXT HXT sing N N 162 HIS N CA sing N N 163 HIS N H sing N N 164 HIS N H2 sing N N 165 HIS CA C sing N N 166 HIS CA CB sing N N 167 HIS CA HA sing N N 168 HIS C O doub N N 169 HIS C OXT sing N N 170 HIS CB CG sing N N 171 HIS CB HB2 sing N N 172 HIS CB HB3 sing N N 173 HIS CG ND1 sing Y N 174 HIS CG CD2 doub Y N 175 HIS ND1 CE1 doub Y N 176 HIS ND1 HD1 sing N N 177 HIS CD2 NE2 sing Y N 178 HIS CD2 HD2 sing N N 179 HIS CE1 NE2 sing Y N 180 HIS CE1 HE1 sing N N 181 HIS NE2 HE2 sing N N 182 HIS OXT HXT sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 ILE N CA sing N N 186 ILE N H sing N N 187 ILE N H2 sing N N 188 ILE CA C sing N N 189 ILE CA CB sing N N 190 ILE CA HA sing N N 191 ILE C O doub N N 192 ILE C OXT sing N N 193 ILE CB CG1 sing N N 194 ILE CB CG2 sing N N 195 ILE CB HB sing N N 196 ILE CG1 CD1 sing N N 197 ILE CG1 HG12 sing N N 198 ILE CG1 HG13 sing N N 199 ILE CG2 HG21 sing N N 200 ILE CG2 HG22 sing N N 201 ILE CG2 HG23 sing N N 202 ILE CD1 HD11 sing N N 203 ILE CD1 HD12 sing N N 204 ILE CD1 HD13 sing N N 205 ILE OXT HXT sing N N 206 LEU N CA sing N N 207 LEU N H sing N N 208 LEU N H2 sing N N 209 LEU CA C sing N N 210 LEU CA CB sing N N 211 LEU CA HA sing N N 212 LEU C O doub N N 213 LEU C OXT sing N N 214 LEU CB CG sing N N 215 LEU CB HB2 sing N N 216 LEU CB HB3 sing N N 217 LEU CG CD1 sing N N 218 LEU CG CD2 sing N N 219 LEU CG HG sing N N 220 LEU CD1 HD11 sing N N 221 LEU CD1 HD12 sing N N 222 LEU CD1 HD13 sing N N 223 LEU CD2 HD21 sing N N 224 LEU CD2 HD22 sing N N 225 LEU CD2 HD23 sing N N 226 LEU OXT HXT sing N N 227 LYS N CA sing N N 228 LYS N H sing N N 229 LYS N H2 sing N N 230 LYS CA C sing N N 231 LYS CA CB sing N N 232 LYS CA HA sing N N 233 LYS C O doub N N 234 LYS C OXT sing N N 235 LYS CB CG sing N N 236 LYS CB HB2 sing N N 237 LYS CB HB3 sing N N 238 LYS CG CD sing N N 239 LYS CG HG2 sing N N 240 LYS CG HG3 sing N N 241 LYS CD CE sing N N 242 LYS CD HD2 sing N N 243 LYS CD HD3 sing N N 244 LYS CE NZ sing N N 245 LYS CE HE2 sing N N 246 LYS CE HE3 sing N N 247 LYS NZ HZ1 sing N N 248 LYS NZ HZ2 sing N N 249 LYS NZ HZ3 sing N N 250 LYS OXT HXT sing N N 251 MET N CA sing N N 252 MET N H sing N N 253 MET N H2 sing N N 254 MET CA C sing N N 255 MET CA CB sing N N 256 MET CA HA sing N N 257 MET C O doub N N 258 MET C OXT sing N N 259 MET CB CG sing N N 260 MET CB HB2 sing N N 261 MET CB HB3 sing N N 262 MET CG SD sing N N 263 MET CG HG2 sing N N 264 MET CG HG3 sing N N 265 MET SD CE sing N N 266 MET CE HE1 sing N N 267 MET CE HE2 sing N N 268 MET CE HE3 sing N N 269 MET OXT HXT sing N N 270 MGT PG O1G doub N N 271 MGT PG O2G sing N N 272 MGT PG O3G sing N N 273 MGT PG O3B sing N N 274 MGT O2G HOG2 sing N N 275 MGT O3G HOG3 sing N N 276 MGT O3B PB sing N N 277 MGT PB O1B doub N N 278 MGT PB O2B sing N N 279 MGT PB O3A sing N N 280 MGT O2B HOB2 sing N N 281 MGT O3A PA sing N N 282 MGT PA O1A doub N N 283 MGT PA O2A sing N N 284 MGT PA "O5'" sing N N 285 MGT O2A HOA2 sing N N 286 MGT "O5'" "C5'" sing N N 287 MGT "C5'" "C4'" sing N N 288 MGT "C5'" "H5'1" sing N N 289 MGT "C5'" "H5'2" sing N N 290 MGT "C4'" "O4'" sing N N 291 MGT "C4'" "C3'" sing N N 292 MGT "C4'" "H4'" sing N N 293 MGT "O4'" "C1'" sing N N 294 MGT "C3'" "O3'" sing N N 295 MGT "C3'" "C2'" sing N N 296 MGT "C3'" "H3'" sing N N 297 MGT "O3'" "HO3'" sing N N 298 MGT "C2'" "O2'" sing N N 299 MGT "C2'" "C1'" sing N N 300 MGT "C2'" "H2'" sing N N 301 MGT "O2'" "HO2'" sing N N 302 MGT "C1'" N9 sing N N 303 MGT "C1'" "H1'" sing N N 304 MGT N9 C8 sing N N 305 MGT N9 C4 sing N N 306 MGT C8 N7 sing N N 307 MGT C8 H81 sing N N 308 MGT C8 H82 sing N N 309 MGT N7 CM7 sing N N 310 MGT N7 C5 sing N N 311 MGT CM7 HM71 sing N N 312 MGT CM7 HM72 sing N N 313 MGT CM7 HM73 sing N N 314 MGT C5 C6 sing N N 315 MGT C5 C4 doub N N 316 MGT C6 O6 doub N N 317 MGT C6 N1 sing N N 318 MGT N1 C2 sing N N 319 MGT N1 HN1 sing N N 320 MGT C2 N2 sing N N 321 MGT C2 N3 doub N N 322 MGT N2 HN21 sing N N 323 MGT N2 HN22 sing N N 324 MGT N3 C4 sing N N 325 PHE N CA sing N N 326 PHE N H sing N N 327 PHE N H2 sing N N 328 PHE CA C sing N N 329 PHE CA CB sing N N 330 PHE CA HA sing N N 331 PHE C O doub N N 332 PHE C OXT sing N N 333 PHE CB CG sing N N 334 PHE CB HB2 sing N N 335 PHE CB HB3 sing N N 336 PHE CG CD1 doub Y N 337 PHE CG CD2 sing Y N 338 PHE CD1 CE1 sing Y N 339 PHE CD1 HD1 sing N N 340 PHE CD2 CE2 doub Y N 341 PHE CD2 HD2 sing N N 342 PHE CE1 CZ doub Y N 343 PHE CE1 HE1 sing N N 344 PHE CE2 CZ sing Y N 345 PHE CE2 HE2 sing N N 346 PHE CZ HZ sing N N 347 PHE OXT HXT sing N N 348 PRO N CA sing N N 349 PRO N CD sing N N 350 PRO N H sing N N 351 PRO CA C sing N N 352 PRO CA CB sing N N 353 PRO CA HA sing N N 354 PRO C O doub N N 355 PRO C OXT sing N N 356 PRO CB CG sing N N 357 PRO CB HB2 sing N N 358 PRO CB HB3 sing N N 359 PRO CG CD sing N N 360 PRO CG HG2 sing N N 361 PRO CG HG3 sing N N 362 PRO CD HD2 sing N N 363 PRO CD HD3 sing N N 364 PRO OXT HXT sing N N 365 SER N CA sing N N 366 SER N H sing N N 367 SER N H2 sing N N 368 SER CA C sing N N 369 SER CA CB sing N N 370 SER CA HA sing N N 371 SER C O doub N N 372 SER C OXT sing N N 373 SER CB OG sing N N 374 SER CB HB2 sing N N 375 SER CB HB3 sing N N 376 SER OG HG sing N N 377 SER OXT HXT sing N N 378 THR N CA sing N N 379 THR N H sing N N 380 THR N H2 sing N N 381 THR CA C sing N N 382 THR CA CB sing N N 383 THR CA HA sing N N 384 THR C O doub N N 385 THR C OXT sing N N 386 THR CB OG1 sing N N 387 THR CB CG2 sing N N 388 THR CB HB sing N N 389 THR OG1 HG1 sing N N 390 THR CG2 HG21 sing N N 391 THR CG2 HG22 sing N N 392 THR CG2 HG23 sing N N 393 THR OXT HXT sing N N 394 TRP N CA sing N N 395 TRP N H sing N N 396 TRP N H2 sing N N 397 TRP CA C sing N N 398 TRP CA CB sing N N 399 TRP CA HA sing N N 400 TRP C O doub N N 401 TRP C OXT sing N N 402 TRP CB CG sing N N 403 TRP CB HB2 sing N N 404 TRP CB HB3 sing N N 405 TRP CG CD1 doub Y N 406 TRP CG CD2 sing Y N 407 TRP CD1 NE1 sing Y N 408 TRP CD1 HD1 sing N N 409 TRP CD2 CE2 doub Y N 410 TRP CD2 CE3 sing Y N 411 TRP NE1 CE2 sing Y N 412 TRP NE1 HE1 sing N N 413 TRP CE2 CZ2 sing Y N 414 TRP CE3 CZ3 doub Y N 415 TRP CE3 HE3 sing N N 416 TRP CZ2 CH2 doub Y N 417 TRP CZ2 HZ2 sing N N 418 TRP CZ3 CH2 sing Y N 419 TRP CZ3 HZ3 sing N N 420 TRP CH2 HH2 sing N N 421 TRP OXT HXT sing N N 422 TYR N CA sing N N 423 TYR N H sing N N 424 TYR N H2 sing N N 425 TYR CA C sing N N 426 TYR CA CB sing N N 427 TYR CA HA sing N N 428 TYR C O doub N N 429 TYR C OXT sing N N 430 TYR CB CG sing N N 431 TYR CB HB2 sing N N 432 TYR CB HB3 sing N N 433 TYR CG CD1 doub Y N 434 TYR CG CD2 sing Y N 435 TYR CD1 CE1 sing Y N 436 TYR CD1 HD1 sing N N 437 TYR CD2 CE2 doub Y N 438 TYR CD2 HD2 sing N N 439 TYR CE1 CZ doub Y N 440 TYR CE1 HE1 sing N N 441 TYR CE2 CZ sing Y N 442 TYR CE2 HE2 sing N N 443 TYR CZ OH sing N N 444 TYR OH HH sing N N 445 TYR OXT HXT sing N N 446 VAL N CA sing N N 447 VAL N H sing N N 448 VAL N H2 sing N N 449 VAL CA C sing N N 450 VAL CA CB sing N N 451 VAL CA HA sing N N 452 VAL C O doub N N 453 VAL C OXT sing N N 454 VAL CB CG1 sing N N 455 VAL CB CG2 sing N N 456 VAL CB HB sing N N 457 VAL CG1 HG11 sing N N 458 VAL CG1 HG12 sing N N 459 VAL CG1 HG13 sing N N 460 VAL CG2 HG21 sing N N 461 VAL CG2 HG22 sing N N 462 VAL CG2 HG23 sing N N 463 VAL OXT HXT sing N N 464 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" MGT 3 '9,10-dioxo-9,10-dihydroanthracene-2,6-disulfonic acid' 11H 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VQZ _pdbx_initial_refinement_model.details 'PDB ENTRY 2VQZ' #