data_4NKI # _entry.id 4NKI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NKI RCSB RCSB083317 WWPDB D_1000083317 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NKI _pdbx_database_status.recvd_initial_deposition_date 2013-11-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Jiang, X.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Epitope characterization of an anti-PD-L1 antibody using orthogonal approaches.' _citation.journal_abbrev J.Mol.Recognit. _citation.journal_volume 28 _citation.page_first 269 _citation.page_last 276 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0952-3499 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25664688 _citation.pdbx_database_id_DOI 10.1002/jmr.2418 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hao, G.' 1 primary 'Wesolowski, J.S.' 2 primary 'Jiang, X.' 3 primary 'Lauder, S.' 4 primary 'Sood, V.D.' 5 # _cell.entry_id 4NKI _cell.length_a 115.944 _cell.length_b 115.944 _cell.length_c 78.920 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NKI _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fab light chain' 24685.820 1 ? ? ? ? 2 polymer man 'Fab heavy chain' 22826.100 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 water nat water 18.015 136 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYIMMWVRQAPGKGLEWVSSIYPSGGITFYADTVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARIKLGTVTTVDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCAAAHHHHHH ; ;EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYIMMWVRQAPGKGLEWVSSIYPSGGITFYADTVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARIKLGTVTTVDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCAAAHHHHHH ; H ? 2 'polypeptide(L)' no no ;QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSNRPSGVSNRFSGSKSGNTASLTISGL QAEDEADYYCSSYTSSSTRVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS ; ;QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSNRPSGVSNRFSGSKSGNTASLTISGL QAEDEADYYCSSYTSSSTRVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 LEU n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 PHE n 1 28 THR n 1 29 PHE n 1 30 SER n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 MET n 1 35 MET n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 VAL n 1 49 SER n 1 50 SER n 1 51 ILE n 1 52 TYR n 1 53 PRO n 1 54 SER n 1 55 GLY n 1 56 GLY n 1 57 ILE n 1 58 THR n 1 59 PHE n 1 60 TYR n 1 61 ALA n 1 62 ASP n 1 63 THR n 1 64 VAL n 1 65 LYS n 1 66 GLY n 1 67 ARG n 1 68 PHE n 1 69 THR n 1 70 ILE n 1 71 SER n 1 72 ARG n 1 73 ASP n 1 74 ASN n 1 75 SER n 1 76 LYS n 1 77 ASN n 1 78 THR n 1 79 LEU n 1 80 TYR n 1 81 LEU n 1 82 GLN n 1 83 MET n 1 84 ASN n 1 85 SER n 1 86 LEU n 1 87 ARG n 1 88 ALA n 1 89 GLU n 1 90 ASP n 1 91 THR n 1 92 ALA n 1 93 VAL n 1 94 TYR n 1 95 TYR n 1 96 CYS n 1 97 ALA n 1 98 ARG n 1 99 ILE n 1 100 LYS n 1 101 LEU n 1 102 GLY n 1 103 THR n 1 104 VAL n 1 105 THR n 1 106 THR n 1 107 VAL n 1 108 ASP n 1 109 TYR n 1 110 TRP n 1 111 GLY n 1 112 GLN n 1 113 GLY n 1 114 THR n 1 115 LEU n 1 116 VAL n 1 117 THR n 1 118 VAL n 1 119 SER n 1 120 SER n 1 121 ALA n 1 122 SER n 1 123 THR n 1 124 LYS n 1 125 GLY n 1 126 PRO n 1 127 SER n 1 128 VAL n 1 129 PHE n 1 130 PRO n 1 131 LEU n 1 132 ALA n 1 133 PRO n 1 134 SER n 1 135 SER n 1 136 LYS n 1 137 SER n 1 138 THR n 1 139 SER n 1 140 GLY n 1 141 GLY n 1 142 THR n 1 143 ALA n 1 144 ALA n 1 145 LEU n 1 146 GLY n 1 147 CYS n 1 148 LEU n 1 149 VAL n 1 150 LYS n 1 151 ASP n 1 152 TYR n 1 153 PHE n 1 154 PRO n 1 155 GLU n 1 156 PRO n 1 157 VAL n 1 158 THR n 1 159 VAL n 1 160 SER n 1 161 TRP n 1 162 ASN n 1 163 SER n 1 164 GLY n 1 165 ALA n 1 166 LEU n 1 167 THR n 1 168 SER n 1 169 GLY n 1 170 VAL n 1 171 HIS n 1 172 THR n 1 173 PHE n 1 174 PRO n 1 175 ALA n 1 176 VAL n 1 177 LEU n 1 178 GLN n 1 179 SER n 1 180 SER n 1 181 GLY n 1 182 LEU n 1 183 TYR n 1 184 SER n 1 185 LEU n 1 186 SER n 1 187 SER n 1 188 VAL n 1 189 VAL n 1 190 THR n 1 191 VAL n 1 192 PRO n 1 193 SER n 1 194 SER n 1 195 SER n 1 196 LEU n 1 197 GLY n 1 198 THR n 1 199 GLN n 1 200 THR n 1 201 TYR n 1 202 ILE n 1 203 CYS n 1 204 ASN n 1 205 VAL n 1 206 ASN n 1 207 HIS n 1 208 LYS n 1 209 PRO n 1 210 SER n 1 211 ASN n 1 212 THR n 1 213 LYS n 1 214 VAL n 1 215 ASP n 1 216 LYS n 1 217 ARG n 1 218 VAL n 1 219 GLU n 1 220 PRO n 1 221 LYS n 1 222 SER n 1 223 CYS n 1 224 ALA n 1 225 ALA n 1 226 ALA n 1 227 HIS n 1 228 HIS n 1 229 HIS n 1 230 HIS n 1 231 HIS n 1 232 HIS n 2 1 GLN n 2 2 SER n 2 3 ALA n 2 4 LEU n 2 5 THR n 2 6 GLN n 2 7 PRO n 2 8 ALA n 2 9 SER n 2 10 VAL n 2 11 SER n 2 12 GLY n 2 13 SER n 2 14 PRO n 2 15 GLY n 2 16 GLN n 2 17 SER n 2 18 ILE n 2 19 THR n 2 20 ILE n 2 21 SER n 2 22 CYS n 2 23 THR n 2 24 GLY n 2 25 THR n 2 26 SER n 2 27 SER n 2 28 ASP n 2 29 VAL n 2 30 GLY n 2 31 GLY n 2 32 TYR n 2 33 ASN n 2 34 TYR n 2 35 VAL n 2 36 SER n 2 37 TRP n 2 38 TYR n 2 39 GLN n 2 40 GLN n 2 41 HIS n 2 42 PRO n 2 43 GLY n 2 44 LYS n 2 45 ALA n 2 46 PRO n 2 47 LYS n 2 48 LEU n 2 49 MET n 2 50 ILE n 2 51 TYR n 2 52 ASP n 2 53 VAL n 2 54 SER n 2 55 ASN n 2 56 ARG n 2 57 PRO n 2 58 SER n 2 59 GLY n 2 60 VAL n 2 61 SER n 2 62 ASN n 2 63 ARG n 2 64 PHE n 2 65 SER n 2 66 GLY n 2 67 SER n 2 68 LYS n 2 69 SER n 2 70 GLY n 2 71 ASN n 2 72 THR n 2 73 ALA n 2 74 SER n 2 75 LEU n 2 76 THR n 2 77 ILE n 2 78 SER n 2 79 GLY n 2 80 LEU n 2 81 GLN n 2 82 ALA n 2 83 GLU n 2 84 ASP n 2 85 GLU n 2 86 ALA n 2 87 ASP n 2 88 TYR n 2 89 TYR n 2 90 CYS n 2 91 SER n 2 92 SER n 2 93 TYR n 2 94 THR n 2 95 SER n 2 96 SER n 2 97 SER n 2 98 THR n 2 99 ARG n 2 100 VAL n 2 101 PHE n 2 102 GLY n 2 103 THR n 2 104 GLY n 2 105 THR n 2 106 LYS n 2 107 VAL n 2 108 THR n 2 109 VAL n 2 110 LEU n 2 111 GLY n 2 112 GLN n 2 113 PRO n 2 114 LYS n 2 115 ALA n 2 116 ASN n 2 117 PRO n 2 118 THR n 2 119 VAL n 2 120 THR n 2 121 LEU n 2 122 PHE n 2 123 PRO n 2 124 PRO n 2 125 SER n 2 126 SER n 2 127 GLU n 2 128 GLU n 2 129 LEU n 2 130 GLN n 2 131 ALA n 2 132 ASN n 2 133 LYS n 2 134 ALA n 2 135 THR n 2 136 LEU n 2 137 VAL n 2 138 CYS n 2 139 LEU n 2 140 ILE n 2 141 SER n 2 142 ASP n 2 143 PHE n 2 144 TYR n 2 145 PRO n 2 146 GLY n 2 147 ALA n 2 148 VAL n 2 149 THR n 2 150 VAL n 2 151 ALA n 2 152 TRP n 2 153 LYS n 2 154 ALA n 2 155 ASP n 2 156 GLY n 2 157 SER n 2 158 PRO n 2 159 VAL n 2 160 LYS n 2 161 ALA n 2 162 GLY n 2 163 VAL n 2 164 GLU n 2 165 THR n 2 166 THR n 2 167 LYS n 2 168 PRO n 2 169 SER n 2 170 LYS n 2 171 GLN n 2 172 SER n 2 173 ASN n 2 174 ASN n 2 175 LYS n 2 176 TYR n 2 177 ALA n 2 178 ALA n 2 179 SER n 2 180 SER n 2 181 TYR n 2 182 LEU n 2 183 SER n 2 184 LEU n 2 185 THR n 2 186 PRO n 2 187 GLU n 2 188 GLN n 2 189 TRP n 2 190 LYS n 2 191 SER n 2 192 HIS n 2 193 ARG n 2 194 SER n 2 195 TYR n 2 196 SER n 2 197 CYS n 2 198 GLN n 2 199 VAL n 2 200 THR n 2 201 HIS n 2 202 GLU n 2 203 GLY n 2 204 SER n 2 205 THR n 2 206 VAL n 2 207 GLU n 2 208 LYS n 2 209 THR n 2 210 VAL n 2 211 ALA n 2 212 PRO n 2 213 THR n 2 214 GLU n 2 215 CYS n 2 216 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4NKI 4NKI 1 ? ? ? 2 PDB 4NKI 4NKI 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NKI H 1 ? 232 ? 4NKI 1 ? 232 ? 1 232 2 2 4NKI L 1 ? 216 ? 4NKI 1 ? 216 ? 1 216 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NKI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.81 _exptl_crystal.density_percent_sol 56.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;The crystals were grown using hanging-drop vapor diffusion at 20 C by mixing equal volumes of the purified protein and the crystallization condition of 0.2M lithium sulfate monohydrate and 20% (wt/vol) polyethylene glycol 3350. , VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2011-06-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4NKI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.709 _reflns.d_resolution_high 2.410 _reflns.number_obs 20258 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4NKI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20258 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.71 _refine.ls_d_res_high 2.41 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_obs 0.1998 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1974 _refine.ls_R_factor_R_free 0.2449 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.14 _refine.ls_number_reflns_R_free 1097 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9451 _refine.correlation_coeff_Fo_to_Fc_free 0.9184 _refine.B_iso_mean 47.50 _refine.aniso_B[1][1] 0.4653 _refine.aniso_B[2][2] 0.4653 _refine.aniso_B[3][3] -0.9306 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.676 _refine.pdbx_overall_ESU_R_Free 0.352 _refine.overall_SU_ML 0.313 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 33.841 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4NKI _refine_analyze.Luzzati_coordinate_error_obs 0.338 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3220 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 3364 _refine_hist.d_res_high 2.41 _refine_hist.d_res_low 34.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 3305 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.23 ? 2.00 4504 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 1070 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 58 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 486 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 3305 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.d_res_high 2.41 _refine_ls_shell.d_res_low 2.53 _refine_ls_shell.number_reflns_R_work 2662 _refine_ls_shell.R_factor_R_work 0.2362 _refine_ls_shell.percent_reflns_obs 99.99 _refine_ls_shell.R_factor_R_free 0.2544 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.86 _refine_ls_shell.number_reflns_R_free 136 _refine_ls_shell.number_reflns_all 2798 _refine_ls_shell.R_factor_all 0.2372 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4NKI _struct.title 'Crystal structure of a Fab' _struct.pdbx_descriptor 'NEUTRALISING ANTIBODY' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NKI _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text 'nonoclonal antibody, immunoglobulin, antibody, PD-L1, Soluble protein, CYTOKINE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? TYR A 32 ? THR H 28 TYR H 32 5 ? 5 HELX_P HELX_P2 2 ARG A 87 ? THR A 91 ? ARG H 87 THR H 91 5 ? 5 HELX_P HELX_P3 3 SER A 163 ? ALA A 165 ? SER H 163 ALA H 165 5 ? 3 HELX_P HELX_P4 4 SER A 194 ? LEU A 196 ? SER H 194 LEU H 196 5 ? 3 HELX_P HELX_P5 5 LYS A 208 ? ASN A 211 ? LYS H 208 ASN H 211 5 ? 4 HELX_P HELX_P6 6 GLN B 81 ? GLU B 85 ? GLN L 81 GLU L 85 5 ? 5 HELX_P HELX_P7 7 SER B 125 ? ALA B 131 ? SER L 125 ALA L 131 1 ? 7 HELX_P HELX_P8 8 THR B 185 ? HIS B 192 ? THR L 185 HIS L 192 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.069 ? disulf2 disulf ? ? A CYS 147 SG ? ? ? 1_555 A CYS 203 SG ? ? H CYS 147 H CYS 203 1_555 ? ? ? ? ? ? ? 2.022 ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 90 SG ? ? L CYS 22 L CYS 90 1_555 ? ? ? ? ? ? ? 2.042 ? disulf4 disulf ? ? B CYS 138 SG ? ? ? 1_555 B CYS 197 SG ? ? L CYS 138 L CYS 197 1_555 ? ? ? ? ? ? ? 2.035 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 153 A . ? PHE 153 H PRO 154 A ? PRO 154 H 1 -7.28 2 GLU 155 A . ? GLU 155 H PRO 156 A ? PRO 156 H 1 -1.72 3 TYR 144 B . ? TYR 144 L PRO 145 B ? PRO 145 L 1 -2.09 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 3 ? G ? 5 ? H ? 4 ? I ? 3 ? J ? 4 ? K ? 4 ? L ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel G 1 2 ? parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel G 4 5 ? anti-parallel H 1 2 ? parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel I 1 2 ? anti-parallel I 2 3 ? anti-parallel J 1 2 ? anti-parallel J 2 3 ? anti-parallel J 3 4 ? anti-parallel K 1 2 ? anti-parallel K 2 3 ? anti-parallel K 3 4 ? anti-parallel L 1 2 ? anti-parallel L 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 3 ? SER A 7 ? GLN H 3 SER H 7 A 2 LEU A 18 ? SER A 25 ? LEU H 18 SER H 25 A 3 THR A 78 ? MET A 83 ? THR H 78 MET H 83 A 4 PHE A 68 ? ASP A 73 ? PHE H 68 ASP H 73 B 1 GLY A 10 ? VAL A 12 ? GLY H 10 VAL H 12 B 2 THR A 114 ? VAL A 118 ? THR H 114 VAL H 118 B 3 ALA A 92 ? ILE A 99 ? ALA H 92 ILE H 99 B 4 MET A 34 ? GLN A 39 ? MET H 34 GLN H 39 B 5 LEU A 45 ? ILE A 51 ? LEU H 45 ILE H 51 B 6 THR A 58 ? TYR A 60 ? THR H 58 TYR H 60 C 1 GLY A 10 ? VAL A 12 ? GLY H 10 VAL H 12 C 2 THR A 114 ? VAL A 118 ? THR H 114 VAL H 118 C 3 ALA A 92 ? ILE A 99 ? ALA H 92 ILE H 99 C 4 VAL A 107 ? TRP A 110 ? VAL H 107 TRP H 110 D 1 SER A 127 ? LEU A 131 ? SER H 127 LEU H 131 D 2 THR A 142 ? TYR A 152 ? THR H 142 TYR H 152 D 3 TYR A 183 ? PRO A 192 ? TYR H 183 PRO H 192 D 4 VAL A 170 ? THR A 172 ? VAL H 170 THR H 172 E 1 SER A 127 ? LEU A 131 ? SER H 127 LEU H 131 E 2 THR A 142 ? TYR A 152 ? THR H 142 TYR H 152 E 3 TYR A 183 ? PRO A 192 ? TYR H 183 PRO H 192 E 4 VAL A 176 ? LEU A 177 ? VAL H 176 LEU H 177 F 1 THR A 158 ? TRP A 161 ? THR H 158 TRP H 161 F 2 TYR A 201 ? HIS A 207 ? TYR H 201 HIS H 207 F 3 THR A 212 ? VAL A 218 ? THR H 212 VAL H 218 G 1 SER B 9 ? GLY B 12 ? SER L 9 GLY L 12 G 2 THR B 105 ? VAL B 109 ? THR L 105 VAL L 109 G 3 ALA B 86 ? TYR B 93 ? ALA L 86 TYR L 93 G 4 VAL B 35 ? GLN B 40 ? VAL L 35 GLN L 40 G 5 LYS B 47 ? ILE B 50 ? LYS L 47 ILE L 50 H 1 SER B 9 ? GLY B 12 ? SER L 9 GLY L 12 H 2 THR B 105 ? VAL B 109 ? THR L 105 VAL L 109 H 3 ALA B 86 ? TYR B 93 ? ALA L 86 TYR L 93 H 4 ARG B 99 ? PHE B 101 ? ARG L 99 PHE L 101 I 1 ILE B 18 ? THR B 23 ? ILE L 18 THR L 23 I 2 THR B 72 ? ILE B 77 ? THR L 72 ILE L 77 I 3 PHE B 64 ? SER B 69 ? PHE L 64 SER L 69 J 1 THR B 118 ? PHE B 122 ? THR L 118 PHE L 122 J 2 ALA B 134 ? PHE B 143 ? ALA L 134 PHE L 143 J 3 TYR B 176 ? LEU B 184 ? TYR L 176 LEU L 184 J 4 VAL B 163 ? THR B 165 ? VAL L 163 THR L 165 K 1 THR B 118 ? PHE B 122 ? THR L 118 PHE L 122 K 2 ALA B 134 ? PHE B 143 ? ALA L 134 PHE L 143 K 3 TYR B 176 ? LEU B 184 ? TYR L 176 LEU L 184 K 4 SER B 169 ? LYS B 170 ? SER L 169 LYS L 170 L 1 THR B 149 ? ALA B 154 ? THR L 149 ALA L 154 L 2 TYR B 195 ? HIS B 201 ? TYR L 195 HIS L 201 L 3 SER B 204 ? VAL B 210 ? SER L 204 VAL L 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 3 ? N GLN H 3 O SER A 25 ? O SER H 25 A 2 3 N LEU A 18 ? N LEU H 18 O MET A 83 ? O MET H 83 A 3 4 O TYR A 80 ? O TYR H 80 N SER A 71 ? N SER H 71 B 1 2 N GLY A 10 ? N GLY H 10 O THR A 117 ? O THR H 117 B 2 3 O THR A 114 ? O THR H 114 N TYR A 94 ? N TYR H 94 B 3 4 O TYR A 95 ? O TYR H 95 N VAL A 37 ? N VAL H 37 B 4 5 N ARG A 38 ? N ARG H 38 O GLU A 46 ? O GLU H 46 B 5 6 N SER A 50 ? N SER H 50 O PHE A 59 ? O PHE H 59 C 1 2 N GLY A 10 ? N GLY H 10 O THR A 117 ? O THR H 117 C 2 3 O THR A 114 ? O THR H 114 N TYR A 94 ? N TYR H 94 C 3 4 N ARG A 98 ? N ARG H 98 O TYR A 109 ? O TYR H 109 D 1 2 N PHE A 129 ? N PHE H 129 O LEU A 148 ? O LEU H 148 D 2 3 N VAL A 149 ? N VAL H 149 O LEU A 185 ? O LEU H 185 D 3 4 O VAL A 188 ? O VAL H 188 N HIS A 171 ? N HIS H 171 E 1 2 N PHE A 129 ? N PHE H 129 O LEU A 148 ? O LEU H 148 E 2 3 N VAL A 149 ? N VAL H 149 O LEU A 185 ? O LEU H 185 E 3 4 O SER A 184 ? O SER H 184 N VAL A 176 ? N VAL H 176 F 1 2 N SER A 160 ? N SER H 160 O ASN A 204 ? O ASN H 204 F 2 3 N TYR A 201 ? N TYR H 201 O VAL A 218 ? O VAL H 218 G 1 2 N GLY B 12 ? N GLY L 12 O THR B 108 ? O THR L 108 G 2 3 O VAL B 107 ? O VAL L 107 N ALA B 86 ? N ALA L 86 G 3 4 O ASP B 87 ? O ASP L 87 N GLN B 40 ? N GLN L 40 G 4 5 N TRP B 37 ? N TRP L 37 O ILE B 50 ? O ILE L 50 H 1 2 N GLY B 12 ? N GLY L 12 O THR B 108 ? O THR L 108 H 2 3 O VAL B 107 ? O VAL L 107 N ALA B 86 ? N ALA L 86 H 3 4 N SER B 92 ? N SER L 92 O VAL B 100 ? O VAL L 100 I 1 2 N CYS B 22 ? N CYS L 22 O ALA B 73 ? O ALA L 73 I 2 3 O THR B 72 ? O THR L 72 N SER B 69 ? N SER L 69 J 1 2 N THR B 120 ? N THR L 120 O LEU B 139 ? O LEU L 139 J 2 3 N PHE B 143 ? N PHE L 143 O TYR B 176 ? O TYR L 176 J 3 4 O TYR B 181 ? O TYR L 181 N GLU B 164 ? N GLU L 164 K 1 2 N THR B 120 ? N THR L 120 O LEU B 139 ? O LEU L 139 K 2 3 N PHE B 143 ? N PHE L 143 O TYR B 176 ? O TYR L 176 K 3 4 O ALA B 177 ? O ALA L 177 N SER B 169 ? N SER L 169 L 1 2 N THR B 149 ? N THR L 149 O THR B 200 ? O THR L 200 L 2 3 N CYS B 197 ? N CYS L 197 O LYS B 208 ? O LYS L 208 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO H 301' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO H 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLY A 66 ? GLY H 66 . ? 1_555 ? 2 AC1 3 PHE A 68 ? PHE H 68 . ? 1_555 ? 3 AC1 3 THR A 69 ? THR H 69 . ? 1_555 ? 4 AC2 3 THR A 91 ? THR H 91 . ? 1_555 ? 5 AC2 3 VAL A 118 ? VAL H 118 . ? 1_555 ? 6 AC2 3 HOH E . ? HOH H 452 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NKI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NKI _atom_sites.fract_transf_matrix[1][1] 0.008625 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008625 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012671 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU H . n A 1 2 VAL 2 2 2 VAL VAL H . n A 1 3 GLN 3 3 3 GLN GLN H . n A 1 4 LEU 4 4 4 LEU LEU H . n A 1 5 LEU 5 5 5 LEU LEU H . n A 1 6 GLU 6 6 6 GLU GLU H . n A 1 7 SER 7 7 7 SER SER H . n A 1 8 GLY 8 8 8 GLY GLY H . n A 1 9 GLY 9 9 9 GLY GLY H . n A 1 10 GLY 10 10 10 GLY GLY H . n A 1 11 LEU 11 11 11 LEU LEU H . n A 1 12 VAL 12 12 12 VAL VAL H . n A 1 13 GLN 13 13 13 GLN GLN H . n A 1 14 PRO 14 14 14 PRO PRO H . n A 1 15 GLY 15 15 15 GLY GLY H . n A 1 16 GLY 16 16 16 GLY GLY H . n A 1 17 SER 17 17 17 SER SER H . n A 1 18 LEU 18 18 18 LEU LEU H . n A 1 19 ARG 19 19 19 ARG ARG H . n A 1 20 LEU 20 20 20 LEU LEU H . n A 1 21 SER 21 21 21 SER SER H . n A 1 22 CYS 22 22 22 CYS CYS H . n A 1 23 ALA 23 23 23 ALA ALA H . n A 1 24 ALA 24 24 24 ALA ALA H . n A 1 25 SER 25 25 25 SER SER H . n A 1 26 GLY 26 26 26 GLY GLY H . n A 1 27 PHE 27 27 27 PHE PHE H . n A 1 28 THR 28 28 28 THR THR H . n A 1 29 PHE 29 29 29 PHE PHE H . n A 1 30 SER 30 30 30 SER SER H . n A 1 31 SER 31 31 31 SER SER H . n A 1 32 TYR 32 32 32 TYR TYR H . n A 1 33 ILE 33 33 33 ILE ILE H . n A 1 34 MET 34 34 34 MET MET H . n A 1 35 MET 35 35 35 MET MET H . n A 1 36 TRP 36 36 36 TRP TRP H . n A 1 37 VAL 37 37 37 VAL VAL H . n A 1 38 ARG 38 38 38 ARG ARG H . n A 1 39 GLN 39 39 39 GLN GLN H . n A 1 40 ALA 40 40 40 ALA ALA H . n A 1 41 PRO 41 41 41 PRO PRO H . n A 1 42 GLY 42 42 42 GLY GLY H . n A 1 43 LYS 43 43 43 LYS LYS H . n A 1 44 GLY 44 44 44 GLY GLY H . n A 1 45 LEU 45 45 45 LEU LEU H . n A 1 46 GLU 46 46 46 GLU GLU H . n A 1 47 TRP 47 47 47 TRP TRP H . n A 1 48 VAL 48 48 48 VAL VAL H . n A 1 49 SER 49 49 49 SER SER H . n A 1 50 SER 50 50 50 SER SER H . n A 1 51 ILE 51 51 51 ILE ILE H . n A 1 52 TYR 52 52 52 TYR TYR H . n A 1 53 PRO 53 53 53 PRO PRO H . n A 1 54 SER 54 54 54 SER SER H . n A 1 55 GLY 55 55 55 GLY GLY H . n A 1 56 GLY 56 56 56 GLY GLY H . n A 1 57 ILE 57 57 57 ILE ILE H . n A 1 58 THR 58 58 58 THR THR H . n A 1 59 PHE 59 59 59 PHE PHE H . n A 1 60 TYR 60 60 60 TYR TYR H . n A 1 61 ALA 61 61 61 ALA ALA H . n A 1 62 ASP 62 62 62 ASP ASP H . n A 1 63 THR 63 63 63 THR THR H . n A 1 64 VAL 64 64 64 VAL VAL H . n A 1 65 LYS 65 65 65 LYS LYS H . n A 1 66 GLY 66 66 66 GLY GLY H . n A 1 67 ARG 67 67 67 ARG ARG H . n A 1 68 PHE 68 68 68 PHE PHE H . n A 1 69 THR 69 69 69 THR THR H . n A 1 70 ILE 70 70 70 ILE ILE H . n A 1 71 SER 71 71 71 SER SER H . n A 1 72 ARG 72 72 72 ARG ARG H . n A 1 73 ASP 73 73 73 ASP ASP H . n A 1 74 ASN 74 74 74 ASN ASN H . n A 1 75 SER 75 75 75 SER SER H . n A 1 76 LYS 76 76 76 LYS LYS H . n A 1 77 ASN 77 77 77 ASN ASN H . n A 1 78 THR 78 78 78 THR THR H . n A 1 79 LEU 79 79 79 LEU LEU H . n A 1 80 TYR 80 80 80 TYR TYR H . n A 1 81 LEU 81 81 81 LEU LEU H . n A 1 82 GLN 82 82 82 GLN GLN H . n A 1 83 MET 83 83 83 MET MET H . n A 1 84 ASN 84 84 84 ASN ASN H . n A 1 85 SER 85 85 85 SER SER H . n A 1 86 LEU 86 86 86 LEU LEU H . n A 1 87 ARG 87 87 87 ARG ARG H . n A 1 88 ALA 88 88 88 ALA ALA H . n A 1 89 GLU 89 89 89 GLU GLU H . n A 1 90 ASP 90 90 90 ASP ASP H . n A 1 91 THR 91 91 91 THR THR H . n A 1 92 ALA 92 92 92 ALA ALA H . n A 1 93 VAL 93 93 93 VAL VAL H . n A 1 94 TYR 94 94 94 TYR TYR H . n A 1 95 TYR 95 95 95 TYR TYR H . n A 1 96 CYS 96 96 96 CYS CYS H . n A 1 97 ALA 97 97 97 ALA ALA H . n A 1 98 ARG 98 98 98 ARG ARG H . n A 1 99 ILE 99 99 99 ILE ILE H . n A 1 100 LYS 100 100 100 LYS LYS H . n A 1 101 LEU 101 101 101 LEU LEU H . n A 1 102 GLY 102 102 102 GLY GLY H . n A 1 103 THR 103 103 103 THR THR H . n A 1 104 VAL 104 104 104 VAL VAL H . n A 1 105 THR 105 105 105 THR THR H . n A 1 106 THR 106 106 106 THR THR H . n A 1 107 VAL 107 107 107 VAL VAL H . n A 1 108 ASP 108 108 108 ASP ASP H . n A 1 109 TYR 109 109 109 TYR TYR H . n A 1 110 TRP 110 110 110 TRP TRP H . n A 1 111 GLY 111 111 111 GLY GLY H . n A 1 112 GLN 112 112 112 GLN GLN H . n A 1 113 GLY 113 113 113 GLY GLY H . n A 1 114 THR 114 114 114 THR THR H . n A 1 115 LEU 115 115 115 LEU LEU H . n A 1 116 VAL 116 116 116 VAL VAL H . n A 1 117 THR 117 117 117 THR THR H . n A 1 118 VAL 118 118 118 VAL VAL H . n A 1 119 SER 119 119 119 SER SER H . n A 1 120 SER 120 120 120 SER SER H . n A 1 121 ALA 121 121 121 ALA ALA H . n A 1 122 SER 122 122 122 SER SER H . n A 1 123 THR 123 123 123 THR THR H . n A 1 124 LYS 124 124 124 LYS LYS H . n A 1 125 GLY 125 125 125 GLY GLY H . n A 1 126 PRO 126 126 126 PRO PRO H . n A 1 127 SER 127 127 127 SER SER H . n A 1 128 VAL 128 128 128 VAL VAL H . n A 1 129 PHE 129 129 129 PHE PHE H . n A 1 130 PRO 130 130 130 PRO PRO H . n A 1 131 LEU 131 131 131 LEU LEU H . n A 1 132 ALA 132 132 132 ALA ALA H . n A 1 133 PRO 133 133 133 PRO PRO H . n A 1 134 SER 134 134 134 SER SER H . n A 1 135 SER 135 135 135 SER SER H . n A 1 136 LYS 136 136 136 LYS LYS H . n A 1 137 SER 137 137 137 SER SER H . n A 1 138 THR 138 138 138 THR THR H . n A 1 139 SER 139 139 139 SER SER H . n A 1 140 GLY 140 140 140 GLY GLY H . n A 1 141 GLY 141 141 141 GLY GLY H . n A 1 142 THR 142 142 142 THR THR H . n A 1 143 ALA 143 143 143 ALA ALA H . n A 1 144 ALA 144 144 144 ALA ALA H . n A 1 145 LEU 145 145 145 LEU LEU H . n A 1 146 GLY 146 146 146 GLY GLY H . n A 1 147 CYS 147 147 147 CYS CYS H . n A 1 148 LEU 148 148 148 LEU LEU H . n A 1 149 VAL 149 149 149 VAL VAL H . n A 1 150 LYS 150 150 150 LYS LYS H . n A 1 151 ASP 151 151 151 ASP ASP H . n A 1 152 TYR 152 152 152 TYR TYR H . n A 1 153 PHE 153 153 153 PHE PHE H . n A 1 154 PRO 154 154 154 PRO PRO H . n A 1 155 GLU 155 155 155 GLU GLU H . n A 1 156 PRO 156 156 156 PRO PRO H . n A 1 157 VAL 157 157 157 VAL VAL H . n A 1 158 THR 158 158 158 THR THR H . n A 1 159 VAL 159 159 159 VAL VAL H . n A 1 160 SER 160 160 160 SER SER H . n A 1 161 TRP 161 161 161 TRP TRP H . n A 1 162 ASN 162 162 162 ASN ASN H . n A 1 163 SER 163 163 163 SER SER H . n A 1 164 GLY 164 164 164 GLY GLY H . n A 1 165 ALA 165 165 165 ALA ALA H . n A 1 166 LEU 166 166 166 LEU LEU H . n A 1 167 THR 167 167 167 THR THR H . n A 1 168 SER 168 168 168 SER SER H . n A 1 169 GLY 169 169 169 GLY GLY H . n A 1 170 VAL 170 170 170 VAL VAL H . n A 1 171 HIS 171 171 171 HIS HIS H . n A 1 172 THR 172 172 172 THR THR H . n A 1 173 PHE 173 173 173 PHE PHE H . n A 1 174 PRO 174 174 174 PRO PRO H . n A 1 175 ALA 175 175 175 ALA ALA H . n A 1 176 VAL 176 176 176 VAL VAL H . n A 1 177 LEU 177 177 177 LEU LEU H . n A 1 178 GLN 178 178 178 GLN GLN H . n A 1 179 SER 179 179 179 SER SER H . n A 1 180 SER 180 180 180 SER SER H . n A 1 181 GLY 181 181 181 GLY GLY H . n A 1 182 LEU 182 182 182 LEU LEU H . n A 1 183 TYR 183 183 183 TYR TYR H . n A 1 184 SER 184 184 184 SER SER H . n A 1 185 LEU 185 185 185 LEU LEU H . n A 1 186 SER 186 186 186 SER SER H . n A 1 187 SER 187 187 187 SER SER H . n A 1 188 VAL 188 188 188 VAL VAL H . n A 1 189 VAL 189 189 189 VAL VAL H . n A 1 190 THR 190 190 190 THR THR H . n A 1 191 VAL 191 191 191 VAL VAL H . n A 1 192 PRO 192 192 192 PRO PRO H . n A 1 193 SER 193 193 193 SER SER H . n A 1 194 SER 194 194 194 SER SER H . n A 1 195 SER 195 195 195 SER SER H . n A 1 196 LEU 196 196 196 LEU LEU H . n A 1 197 GLY 197 197 197 GLY GLY H . n A 1 198 THR 198 198 198 THR THR H . n A 1 199 GLN 199 199 199 GLN GLN H . n A 1 200 THR 200 200 200 THR THR H . n A 1 201 TYR 201 201 201 TYR TYR H . n A 1 202 ILE 202 202 202 ILE ILE H . n A 1 203 CYS 203 203 203 CYS CYS H . n A 1 204 ASN 204 204 204 ASN ASN H . n A 1 205 VAL 205 205 205 VAL VAL H . n A 1 206 ASN 206 206 206 ASN ASN H . n A 1 207 HIS 207 207 207 HIS HIS H . n A 1 208 LYS 208 208 208 LYS LYS H . n A 1 209 PRO 209 209 209 PRO PRO H . n A 1 210 SER 210 210 210 SER SER H . n A 1 211 ASN 211 211 211 ASN ASN H . n A 1 212 THR 212 212 212 THR THR H . n A 1 213 LYS 213 213 213 LYS LYS H . n A 1 214 VAL 214 214 214 VAL VAL H . n A 1 215 ASP 215 215 215 ASP ASP H . n A 1 216 LYS 216 216 216 LYS LYS H . n A 1 217 ARG 217 217 217 ARG ARG H . n A 1 218 VAL 218 218 218 VAL VAL H . n A 1 219 GLU 219 219 219 GLU GLU H . n A 1 220 PRO 220 220 220 PRO PRO H . n A 1 221 LYS 221 221 221 LYS LYS H . n A 1 222 SER 222 222 ? ? ? H . n A 1 223 CYS 223 223 ? ? ? H . n A 1 224 ALA 224 224 ? ? ? H . n A 1 225 ALA 225 225 ? ? ? H . n A 1 226 ALA 226 226 ? ? ? H . n A 1 227 HIS 227 227 ? ? ? H . n A 1 228 HIS 228 228 ? ? ? H . n A 1 229 HIS 229 229 ? ? ? H . n A 1 230 HIS 230 230 ? ? ? H . n A 1 231 HIS 231 231 ? ? ? H . n A 1 232 HIS 232 232 ? ? ? H . n B 2 1 GLN 1 1 ? ? ? L . n B 2 2 SER 2 2 2 SER SER L . n B 2 3 ALA 3 3 3 ALA ALA L . n B 2 4 LEU 4 4 4 LEU LEU L . n B 2 5 THR 5 5 5 THR THR L . n B 2 6 GLN 6 6 6 GLN GLN L . n B 2 7 PRO 7 7 7 PRO PRO L . n B 2 8 ALA 8 8 8 ALA ALA L . n B 2 9 SER 9 9 9 SER SER L . n B 2 10 VAL 10 10 10 VAL VAL L . n B 2 11 SER 11 11 11 SER SER L . n B 2 12 GLY 12 12 12 GLY GLY L . n B 2 13 SER 13 13 13 SER SER L . n B 2 14 PRO 14 14 14 PRO PRO L . n B 2 15 GLY 15 15 15 GLY GLY L . n B 2 16 GLN 16 16 16 GLN GLN L . n B 2 17 SER 17 17 17 SER SER L . n B 2 18 ILE 18 18 18 ILE ILE L . n B 2 19 THR 19 19 19 THR THR L . n B 2 20 ILE 20 20 20 ILE ILE L . n B 2 21 SER 21 21 21 SER SER L . n B 2 22 CYS 22 22 22 CYS CYS L . n B 2 23 THR 23 23 23 THR THR L . n B 2 24 GLY 24 24 24 GLY GLY L . n B 2 25 THR 25 25 25 THR THR L . n B 2 26 SER 26 26 26 SER SER L . n B 2 27 SER 27 27 27 SER SER L . n B 2 28 ASP 28 28 28 ASP ASP L . n B 2 29 VAL 29 29 29 VAL VAL L . n B 2 30 GLY 30 30 30 GLY GLY L . n B 2 31 GLY 31 31 31 GLY GLY L . n B 2 32 TYR 32 32 32 TYR TYR L . n B 2 33 ASN 33 33 33 ASN ASN L . n B 2 34 TYR 34 34 34 TYR TYR L . n B 2 35 VAL 35 35 35 VAL VAL L . n B 2 36 SER 36 36 36 SER SER L . n B 2 37 TRP 37 37 37 TRP TRP L . n B 2 38 TYR 38 38 38 TYR TYR L . n B 2 39 GLN 39 39 39 GLN GLN L . n B 2 40 GLN 40 40 40 GLN GLN L . n B 2 41 HIS 41 41 41 HIS HIS L . n B 2 42 PRO 42 42 42 PRO PRO L . n B 2 43 GLY 43 43 43 GLY GLY L . n B 2 44 LYS 44 44 44 LYS LYS L . n B 2 45 ALA 45 45 45 ALA ALA L . n B 2 46 PRO 46 46 46 PRO PRO L . n B 2 47 LYS 47 47 47 LYS LYS L . n B 2 48 LEU 48 48 48 LEU LEU L . n B 2 49 MET 49 49 49 MET MET L . n B 2 50 ILE 50 50 50 ILE ILE L . n B 2 51 TYR 51 51 51 TYR TYR L . n B 2 52 ASP 52 52 52 ASP ASP L . n B 2 53 VAL 53 53 53 VAL VAL L . n B 2 54 SER 54 54 54 SER SER L . n B 2 55 ASN 55 55 55 ASN ASN L . n B 2 56 ARG 56 56 56 ARG ARG L . n B 2 57 PRO 57 57 57 PRO PRO L . n B 2 58 SER 58 58 58 SER SER L . n B 2 59 GLY 59 59 59 GLY GLY L . n B 2 60 VAL 60 60 60 VAL VAL L . n B 2 61 SER 61 61 61 SER SER L . n B 2 62 ASN 62 62 62 ASN ASN L . n B 2 63 ARG 63 63 63 ARG ARG L . n B 2 64 PHE 64 64 64 PHE PHE L . n B 2 65 SER 65 65 65 SER SER L . n B 2 66 GLY 66 66 66 GLY GLY L . n B 2 67 SER 67 67 67 SER SER L . n B 2 68 LYS 68 68 68 LYS LYS L . n B 2 69 SER 69 69 69 SER SER L . n B 2 70 GLY 70 70 70 GLY GLY L . n B 2 71 ASN 71 71 71 ASN ASN L . n B 2 72 THR 72 72 72 THR THR L . n B 2 73 ALA 73 73 73 ALA ALA L . n B 2 74 SER 74 74 74 SER SER L . n B 2 75 LEU 75 75 75 LEU LEU L . n B 2 76 THR 76 76 76 THR THR L . n B 2 77 ILE 77 77 77 ILE ILE L . n B 2 78 SER 78 78 78 SER SER L . n B 2 79 GLY 79 79 79 GLY GLY L . n B 2 80 LEU 80 80 80 LEU LEU L . n B 2 81 GLN 81 81 81 GLN GLN L . n B 2 82 ALA 82 82 82 ALA ALA L . n B 2 83 GLU 83 83 83 GLU GLU L . n B 2 84 ASP 84 84 84 ASP ASP L . n B 2 85 GLU 85 85 85 GLU GLU L . n B 2 86 ALA 86 86 86 ALA ALA L . n B 2 87 ASP 87 87 87 ASP ASP L . n B 2 88 TYR 88 88 88 TYR TYR L . n B 2 89 TYR 89 89 89 TYR TYR L . n B 2 90 CYS 90 90 90 CYS CYS L . n B 2 91 SER 91 91 91 SER SER L . n B 2 92 SER 92 92 92 SER SER L . n B 2 93 TYR 93 93 93 TYR TYR L . n B 2 94 THR 94 94 94 THR THR L . n B 2 95 SER 95 95 95 SER SER L . n B 2 96 SER 96 96 96 SER SER L . n B 2 97 SER 97 97 97 SER SER L . n B 2 98 THR 98 98 98 THR THR L . n B 2 99 ARG 99 99 99 ARG ARG L . n B 2 100 VAL 100 100 100 VAL VAL L . n B 2 101 PHE 101 101 101 PHE PHE L . n B 2 102 GLY 102 102 102 GLY GLY L . n B 2 103 THR 103 103 103 THR THR L . n B 2 104 GLY 104 104 104 GLY GLY L . n B 2 105 THR 105 105 105 THR THR L . n B 2 106 LYS 106 106 106 LYS LYS L . n B 2 107 VAL 107 107 107 VAL VAL L . n B 2 108 THR 108 108 108 THR THR L . n B 2 109 VAL 109 109 109 VAL VAL L . n B 2 110 LEU 110 110 110 LEU LEU L . n B 2 111 GLY 111 111 111 GLY GLY L . n B 2 112 GLN 112 112 112 GLN GLN L . n B 2 113 PRO 113 113 113 PRO PRO L . n B 2 114 LYS 114 114 114 LYS LYS L . n B 2 115 ALA 115 115 115 ALA ALA L . n B 2 116 ASN 116 116 116 ASN ASN L . n B 2 117 PRO 117 117 117 PRO PRO L . n B 2 118 THR 118 118 118 THR THR L . n B 2 119 VAL 119 119 119 VAL VAL L . n B 2 120 THR 120 120 120 THR THR L . n B 2 121 LEU 121 121 121 LEU LEU L . n B 2 122 PHE 122 122 122 PHE PHE L . n B 2 123 PRO 123 123 123 PRO PRO L . n B 2 124 PRO 124 124 124 PRO PRO L . n B 2 125 SER 125 125 125 SER SER L . n B 2 126 SER 126 126 126 SER SER L . n B 2 127 GLU 127 127 127 GLU GLU L . n B 2 128 GLU 128 128 128 GLU GLU L . n B 2 129 LEU 129 129 129 LEU LEU L . n B 2 130 GLN 130 130 130 GLN GLN L . n B 2 131 ALA 131 131 131 ALA ALA L . n B 2 132 ASN 132 132 132 ASN ASN L . n B 2 133 LYS 133 133 133 LYS LYS L . n B 2 134 ALA 134 134 134 ALA ALA L . n B 2 135 THR 135 135 135 THR THR L . n B 2 136 LEU 136 136 136 LEU LEU L . n B 2 137 VAL 137 137 137 VAL VAL L . n B 2 138 CYS 138 138 138 CYS CYS L . n B 2 139 LEU 139 139 139 LEU LEU L . n B 2 140 ILE 140 140 140 ILE ILE L . n B 2 141 SER 141 141 141 SER SER L . n B 2 142 ASP 142 142 142 ASP ASP L . n B 2 143 PHE 143 143 143 PHE PHE L . n B 2 144 TYR 144 144 144 TYR TYR L . n B 2 145 PRO 145 145 145 PRO PRO L . n B 2 146 GLY 146 146 146 GLY GLY L . n B 2 147 ALA 147 147 147 ALA ALA L . n B 2 148 VAL 148 148 148 VAL VAL L . n B 2 149 THR 149 149 149 THR THR L . n B 2 150 VAL 150 150 150 VAL VAL L . n B 2 151 ALA 151 151 151 ALA ALA L . n B 2 152 TRP 152 152 152 TRP TRP L . n B 2 153 LYS 153 153 153 LYS LYS L . n B 2 154 ALA 154 154 154 ALA ALA L . n B 2 155 ASP 155 155 155 ASP ASP L . n B 2 156 GLY 156 156 156 GLY GLY L . n B 2 157 SER 157 157 157 SER SER L . n B 2 158 PRO 158 158 158 PRO PRO L . n B 2 159 VAL 159 159 159 VAL VAL L . n B 2 160 LYS 160 160 160 LYS LYS L . n B 2 161 ALA 161 161 161 ALA ALA L . n B 2 162 GLY 162 162 162 GLY GLY L . n B 2 163 VAL 163 163 163 VAL VAL L . n B 2 164 GLU 164 164 164 GLU GLU L . n B 2 165 THR 165 165 165 THR THR L . n B 2 166 THR 166 166 166 THR THR L . n B 2 167 LYS 167 167 167 LYS LYS L . n B 2 168 PRO 168 168 168 PRO PRO L . n B 2 169 SER 169 169 169 SER SER L . n B 2 170 LYS 170 170 170 LYS LYS L . n B 2 171 GLN 171 171 171 GLN GLN L . n B 2 172 SER 172 172 172 SER SER L . n B 2 173 ASN 173 173 173 ASN ASN L . n B 2 174 ASN 174 174 174 ASN ASN L . n B 2 175 LYS 175 175 175 LYS LYS L . n B 2 176 TYR 176 176 176 TYR TYR L . n B 2 177 ALA 177 177 177 ALA ALA L . n B 2 178 ALA 178 178 178 ALA ALA L . n B 2 179 SER 179 179 179 SER SER L . n B 2 180 SER 180 180 180 SER SER L . n B 2 181 TYR 181 181 181 TYR TYR L . n B 2 182 LEU 182 182 182 LEU LEU L . n B 2 183 SER 183 183 183 SER SER L . n B 2 184 LEU 184 184 184 LEU LEU L . n B 2 185 THR 185 185 185 THR THR L . n B 2 186 PRO 186 186 186 PRO PRO L . n B 2 187 GLU 187 187 187 GLU GLU L . n B 2 188 GLN 188 188 188 GLN GLN L . n B 2 189 TRP 189 189 189 TRP TRP L . n B 2 190 LYS 190 190 190 LYS LYS L . n B 2 191 SER 191 191 191 SER SER L . n B 2 192 HIS 192 192 192 HIS HIS L . n B 2 193 ARG 193 193 193 ARG ARG L . n B 2 194 SER 194 194 194 SER SER L . n B 2 195 TYR 195 195 195 TYR TYR L . n B 2 196 SER 196 196 196 SER SER L . n B 2 197 CYS 197 197 197 CYS CYS L . n B 2 198 GLN 198 198 198 GLN GLN L . n B 2 199 VAL 199 199 199 VAL VAL L . n B 2 200 THR 200 200 200 THR THR L . n B 2 201 HIS 201 201 201 HIS HIS L . n B 2 202 GLU 202 202 202 GLU GLU L . n B 2 203 GLY 203 203 203 GLY GLY L . n B 2 204 SER 204 204 204 SER SER L . n B 2 205 THR 205 205 205 THR THR L . n B 2 206 VAL 206 206 206 VAL VAL L . n B 2 207 GLU 207 207 207 GLU GLU L . n B 2 208 LYS 208 208 208 LYS LYS L . n B 2 209 THR 209 209 209 THR THR L . n B 2 210 VAL 210 210 210 VAL VAL L . n B 2 211 ALA 211 211 211 ALA ALA L . n B 2 212 PRO 212 212 212 PRO PRO L . n B 2 213 THR 213 213 213 THR THR L . n B 2 214 GLU 214 214 ? ? ? L . n B 2 215 CYS 215 215 ? ? ? L . n B 2 216 SER 216 216 ? ? ? L . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3200 ? 1 MORE -24 ? 1 'SSA (A^2)' 19770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-12 2 'Structure model' 1 1 2015-04-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 14.4822 57.5769 4.5704 -0.1443 0.0569 -0.1535 0.0205 -0.0329 -0.0068 1.1594 1.0515 1.3184 0.4237 -0.6170 -0.3279 0.0184 0.0427 -0.0611 0.1001 0.1091 -0.0487 0.0164 -0.0955 -0.1482 'X-RAY DIFFRACTION' 2 ? refined 27.0101 45.3354 8.4559 -0.0938 -0.0844 -0.2026 0.0050 -0.0745 -0.0149 2.7591 1.4877 0.5706 0.2887 -0.8268 -0.2102 -0.1283 0.0649 0.0634 0.0082 -0.1156 -0.1942 -0.2641 0.1290 0.0223 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 H 1 H 221 '{ H|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 L 2 L 213 '{ L|* }' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 BUSTER refinement 2.11.5 ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER H 134 ? ? -34.22 130.34 2 1 THR H 138 ? ? -62.98 3.74 3 1 ASP L 28 ? ? -141.25 -97.64 4 1 ASN L 33 ? ? -91.29 32.40 5 1 TYR L 34 ? ? -107.09 51.69 6 1 VAL L 53 ? ? 78.65 -55.57 7 1 ALA L 86 ? ? -172.49 -176.57 8 1 SER L 97 ? ? 73.16 -2.88 9 1 SER L 157 ? ? 65.01 145.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H SER 222 ? A SER 222 2 1 Y 1 H CYS 223 ? A CYS 223 3 1 Y 1 H ALA 224 ? A ALA 224 4 1 Y 1 H ALA 225 ? A ALA 225 5 1 Y 1 H ALA 226 ? A ALA 226 6 1 Y 1 H HIS 227 ? A HIS 227 7 1 Y 1 H HIS 228 ? A HIS 228 8 1 Y 1 H HIS 229 ? A HIS 229 9 1 Y 1 H HIS 230 ? A HIS 230 10 1 Y 1 H HIS 231 ? A HIS 231 11 1 Y 1 H HIS 232 ? A HIS 232 12 1 Y 1 L GLN 1 ? B GLN 1 13 1 Y 1 L GLU 214 ? B GLU 214 14 1 Y 1 L CYS 215 ? B CYS 215 15 1 Y 1 L SER 216 ? B SER 216 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO 1 301 1 EDO EDO H . D 3 EDO 1 302 2 EDO EDO H . E 4 HOH 1 401 2 HOH HOH H . E 4 HOH 2 402 4 HOH HOH H . E 4 HOH 3 403 5 HOH HOH H . E 4 HOH 4 404 6 HOH HOH H . E 4 HOH 5 405 11 HOH HOH H . E 4 HOH 6 406 14 HOH HOH H . E 4 HOH 7 407 15 HOH HOH H . E 4 HOH 8 408 16 HOH HOH H . E 4 HOH 9 409 17 HOH HOH H . E 4 HOH 10 410 19 HOH HOH H . E 4 HOH 11 411 20 HOH HOH H . E 4 HOH 12 412 21 HOH HOH H . E 4 HOH 13 413 23 HOH HOH H . E 4 HOH 14 414 25 HOH HOH H . E 4 HOH 15 415 26 HOH HOH H . E 4 HOH 16 416 27 HOH HOH H . E 4 HOH 17 417 32 HOH HOH H . E 4 HOH 18 418 33 HOH HOH H . E 4 HOH 19 419 34 HOH HOH H . E 4 HOH 20 420 35 HOH HOH H . E 4 HOH 21 421 36 HOH HOH H . E 4 HOH 22 422 38 HOH HOH H . E 4 HOH 23 423 44 HOH HOH H . E 4 HOH 24 424 45 HOH HOH H . E 4 HOH 25 425 46 HOH HOH H . E 4 HOH 26 426 48 HOH HOH H . E 4 HOH 27 427 50 HOH HOH H . E 4 HOH 28 428 52 HOH HOH H . E 4 HOH 29 429 54 HOH HOH H . E 4 HOH 30 430 55 HOH HOH H . E 4 HOH 31 431 57 HOH HOH H . E 4 HOH 32 432 58 HOH HOH H . E 4 HOH 33 433 60 HOH HOH H . E 4 HOH 34 434 64 HOH HOH H . E 4 HOH 35 435 65 HOH HOH H . E 4 HOH 36 436 67 HOH HOH H . E 4 HOH 37 437 69 HOH HOH H . E 4 HOH 38 438 70 HOH HOH H . E 4 HOH 39 439 73 HOH HOH H . E 4 HOH 40 440 74 HOH HOH H . E 4 HOH 41 441 75 HOH HOH H . E 4 HOH 42 442 76 HOH HOH H . E 4 HOH 43 443 79 HOH HOH H . E 4 HOH 44 444 81 HOH HOH H . E 4 HOH 45 445 83 HOH HOH H . E 4 HOH 46 446 84 HOH HOH H . E 4 HOH 47 447 85 HOH HOH H . E 4 HOH 48 448 86 HOH HOH H . E 4 HOH 49 449 88 HOH HOH H . E 4 HOH 50 450 89 HOH HOH H . E 4 HOH 51 451 91 HOH HOH H . E 4 HOH 52 452 92 HOH HOH H . E 4 HOH 53 453 93 HOH HOH H . E 4 HOH 54 454 95 HOH HOH H . E 4 HOH 55 455 96 HOH HOH H . E 4 HOH 56 456 97 HOH HOH H . E 4 HOH 57 457 99 HOH HOH H . E 4 HOH 58 458 101 HOH HOH H . E 4 HOH 59 459 104 HOH HOH H . E 4 HOH 60 460 107 HOH HOH H . E 4 HOH 61 461 108 HOH HOH H . E 4 HOH 62 462 110 HOH HOH H . E 4 HOH 63 463 112 HOH HOH H . E 4 HOH 64 464 114 HOH HOH H . E 4 HOH 65 465 118 HOH HOH H . E 4 HOH 66 466 119 HOH HOH H . E 4 HOH 67 467 122 HOH HOH H . E 4 HOH 68 468 123 HOH HOH H . E 4 HOH 69 469 124 HOH HOH H . E 4 HOH 70 470 126 HOH HOH H . E 4 HOH 71 471 127 HOH HOH H . E 4 HOH 72 472 129 HOH HOH H . E 4 HOH 73 473 130 HOH HOH H . E 4 HOH 74 474 133 HOH HOH H . E 4 HOH 75 475 137 HOH HOH H . F 4 HOH 1 301 1 HOH HOH L . F 4 HOH 2 302 3 HOH HOH L . F 4 HOH 3 303 7 HOH HOH L . F 4 HOH 4 304 8 HOH HOH L . F 4 HOH 5 305 9 HOH HOH L . F 4 HOH 6 306 10 HOH HOH L . F 4 HOH 7 307 12 HOH HOH L . F 4 HOH 8 308 13 HOH HOH L . F 4 HOH 9 309 18 HOH HOH L . F 4 HOH 10 310 22 HOH HOH L . F 4 HOH 11 311 24 HOH HOH L . F 4 HOH 12 312 28 HOH HOH L . F 4 HOH 13 313 29 HOH HOH L . F 4 HOH 14 314 30 HOH HOH L . F 4 HOH 15 315 31 HOH HOH L . F 4 HOH 16 316 37 HOH HOH L . F 4 HOH 17 317 39 HOH HOH L . F 4 HOH 18 318 40 HOH HOH L . F 4 HOH 19 319 41 HOH HOH L . F 4 HOH 20 320 42 HOH HOH L . F 4 HOH 21 321 43 HOH HOH L . F 4 HOH 22 322 47 HOH HOH L . F 4 HOH 23 323 49 HOH HOH L . F 4 HOH 24 324 51 HOH HOH L . F 4 HOH 25 325 53 HOH HOH L . F 4 HOH 26 326 56 HOH HOH L . F 4 HOH 27 327 59 HOH HOH L . F 4 HOH 28 328 61 HOH HOH L . F 4 HOH 29 329 62 HOH HOH L . F 4 HOH 30 330 63 HOH HOH L . F 4 HOH 31 331 66 HOH HOH L . F 4 HOH 32 332 68 HOH HOH L . F 4 HOH 33 333 71 HOH HOH L . F 4 HOH 34 334 72 HOH HOH L . F 4 HOH 35 335 77 HOH HOH L . F 4 HOH 36 336 78 HOH HOH L . F 4 HOH 37 337 80 HOH HOH L . F 4 HOH 38 338 82 HOH HOH L . F 4 HOH 39 339 87 HOH HOH L . F 4 HOH 40 340 90 HOH HOH L . F 4 HOH 41 341 94 HOH HOH L . F 4 HOH 42 342 98 HOH HOH L . F 4 HOH 43 343 100 HOH HOH L . F 4 HOH 44 344 102 HOH HOH L . F 4 HOH 45 345 103 HOH HOH L . F 4 HOH 46 346 105 HOH HOH L . F 4 HOH 47 347 106 HOH HOH L . F 4 HOH 48 348 109 HOH HOH L . F 4 HOH 49 349 111 HOH HOH L . F 4 HOH 50 350 113 HOH HOH L . F 4 HOH 51 351 115 HOH HOH L . F 4 HOH 52 352 116 HOH HOH L . F 4 HOH 53 353 117 HOH HOH L . F 4 HOH 54 354 120 HOH HOH L . F 4 HOH 55 355 121 HOH HOH L . F 4 HOH 56 356 128 HOH HOH L . F 4 HOH 57 357 131 HOH HOH L . F 4 HOH 58 358 132 HOH HOH L . F 4 HOH 59 359 134 HOH HOH L . F 4 HOH 60 360 135 HOH HOH L . F 4 HOH 61 361 136 HOH HOH L . #