data_4OJI # _entry.id 4OJI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4OJI pdb_00004oji 10.2210/pdb4oji/pdb NDB NA2902 ? ? RCSB RCSB084571 ? ? WWPDB D_1000084571 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-23 2 'Structure model' 1 1 2014-08-27 3 'Structure model' 1 2 2014-09-03 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'The calculated R_free(0.1680) is smaller than R_work(0.1753)' # _pdbx_database_status.entry_id 4OJI _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-01-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Wilson, T.J.' 2 'McPhee, S.A.' 3 'Lilley, D.M.J.' 4 # _citation.id primary _citation.title 'Crystal structure and mechanistic investigation of the twister ribozyme.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 10 _citation.page_first 739 _citation.page_last 744 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25038788 _citation.pdbx_database_id_DOI 10.1038/nchembio.1587 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Wilson, T.J.' 2 ? primary 'McPhee, S.A.' 3 ? primary 'Lilley, D.M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (52-MER)' 17457.506 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 water nat water 18.015 50 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'CCGCC(DU)AACACUGCCAAUGCCGGUCCCAAGCCCGGAUAAAAGUGGAGGGGGCGG' _entity_poly.pdbx_seq_one_letter_code_can CCGCCUAACACUGCCAAUGCCGGUCCCAAGCCCGGAUAAAAGUGGAGGGGGCGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 C n 1 5 C n 1 6 DU n 1 7 A n 1 8 A n 1 9 C n 1 10 A n 1 11 C n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 A n 1 17 A n 1 18 U n 1 19 G n 1 20 C n 1 21 C n 1 22 G n 1 23 G n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 A n 1 29 A n 1 30 G n 1 31 C n 1 32 C n 1 33 C n 1 34 G n 1 35 G n 1 36 A n 1 37 U n 1 38 A n 1 39 A n 1 40 A n 1 41 A n 1 42 G n 1 43 U n 1 44 G n 1 45 G n 1 46 A n 1 47 G n 1 48 G n 1 49 G n 1 50 G n 1 51 G n 1 52 C n 1 53 G n 1 54 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic RNA sample according to O.sativa sequence.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 DU 6 6 6 DU DU A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 ? ? ? A . n A 1 18 U 18 18 ? ? ? A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 U 24 24 24 U U A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 U 37 37 37 U U A . n A 1 38 A 38 38 38 A A A . n A 1 39 A 39 39 39 A A A . n A 1 40 A 40 40 40 A A A . n A 1 41 A 41 41 41 A A A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 G 49 49 49 G G A . n A 1 50 G 50 50 50 G G A . n A 1 51 G 51 51 51 G G A . n A 1 52 C 52 52 52 C C A . n A 1 53 G 53 53 53 G G A . n A 1 54 G 54 54 54 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 55 MG MG A . C 2 MG 1 102 56 MG MG A . D 2 MG 1 103 57 MG MG A . E 2 MG 1 104 58 MG MG A . F 2 MG 1 105 59 MG MG A . G 3 HOH 1 201 102 HOH HOH A . G 3 HOH 2 202 103 HOH HOH A . G 3 HOH 3 203 104 HOH HOH A . G 3 HOH 4 204 105 HOH HOH A . G 3 HOH 5 205 106 HOH HOH A . G 3 HOH 6 206 107 HOH HOH A . G 3 HOH 7 207 108 HOH HOH A . G 3 HOH 8 208 109 HOH HOH A . G 3 HOH 9 209 110 HOH HOH A . G 3 HOH 10 210 111 HOH HOH A . G 3 HOH 11 211 112 HOH HOH A . G 3 HOH 12 212 113 HOH HOH A . G 3 HOH 13 213 114 HOH HOH A . G 3 HOH 14 214 115 HOH HOH A . G 3 HOH 15 215 116 HOH HOH A . G 3 HOH 16 216 117 HOH HOH A . G 3 HOH 17 217 118 HOH HOH A . G 3 HOH 18 218 119 HOH HOH A . G 3 HOH 19 219 120 HOH HOH A . G 3 HOH 20 220 121 HOH HOH A . G 3 HOH 21 221 122 HOH HOH A . G 3 HOH 22 222 123 HOH HOH A . G 3 HOH 23 223 124 HOH HOH A . G 3 HOH 24 224 125 HOH HOH A . G 3 HOH 25 225 126 HOH HOH A . G 3 HOH 26 226 127 HOH HOH A . G 3 HOH 27 227 128 HOH HOH A . G 3 HOH 28 228 129 HOH HOH A . G 3 HOH 29 229 130 HOH HOH A . G 3 HOH 30 230 131 HOH HOH A . G 3 HOH 31 231 132 HOH HOH A . G 3 HOH 32 232 133 HOH HOH A . G 3 HOH 33 233 134 HOH HOH A . G 3 HOH 34 234 135 HOH HOH A . G 3 HOH 35 235 136 HOH HOH A . G 3 HOH 36 236 137 HOH HOH A . G 3 HOH 37 237 138 HOH HOH A . G 3 HOH 38 238 139 HOH HOH A . G 3 HOH 39 239 140 HOH HOH A . G 3 HOH 40 240 141 HOH HOH A . G 3 HOH 41 241 142 HOH HOH A . G 3 HOH 42 242 143 HOH HOH A . G 3 HOH 43 243 144 HOH HOH A . G 3 HOH 44 244 145 HOH HOH A . G 3 HOH 45 245 146 HOH HOH A . G 3 HOH 46 246 147 HOH HOH A . G 3 HOH 47 247 148 HOH HOH A . G 3 HOH 48 248 149 HOH HOH A . G 3 HOH 49 249 150 HOH HOH A . G 3 HOH 50 250 151 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM 0.2.8 04/10/13 package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 0.2.8 04/10/13 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.8.4_1496 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? # _cell.length_a 55.380 _cell.length_b 55.380 _cell.length_c 175.471 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4OJI _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.entry_id 4OJI _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 179 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4OJI _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 280 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG8000, ammonium acetate, magnesium chloride, , pH pH8, EVAPORATION, temperature 280K' _exptl_crystal_grow.pdbx_pH_range pH8 # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-08-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9393 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9393 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 # _reflns.entry_id 4OJI _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 47.960 _reflns.number_obs 7704 _reflns.pdbx_redundancy 4.700 _reflns.percent_possible_obs 99.500 _reflns.B_iso_Wilson_estimate 45.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4OJI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 47.9600 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.2900 _refine.ls_number_reflns_obs 7646 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1809 _refine.ls_R_factor_R_work 0.1797 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2028 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6200 _refine.ls_number_reflns_R_free 353 _refine.ls_number_reflns_R_work 7293 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 41.8900 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8123 _refine.B_iso_max 148.600 _refine.B_iso_min 12.450 _refine.pdbx_overall_phase_error 23.4400 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1114 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 1169 _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 47.9600 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1291 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2013 0.633 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 266 0.030 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 54 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 643 14.234 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.3003 2.6331 3 100.0000 2350 . 0.2653 0.3570 . 116 . 2466 . 'X-RAY DIFFRACTION' . 2.6331 3.3173 3 99.0000 2381 . 0.2059 0.2306 . 121 . 2502 . 'X-RAY DIFFRACTION' . 3.3173 47.9708 3 98.0000 2562 . 0.1506 0.1603 . 116 . 2678 . 'X-RAY DIFFRACTION' . # _struct.entry_id 4OJI _struct.title 'Crystal Structure of Twister Ribozyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4OJI _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'pseudoknot, self-cleavage, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4OJI _struct_ref.pdbx_db_accession 4OJI _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4OJI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 54 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4OJI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 54 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 54 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'biological unit is the same as asym.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DU 6 OP1 ? ? ? 1_555 F MG . MG ? ? A DU 6 A MG 105 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc2 metalc ? ? A U 24 OP2 ? ? ? 1_555 E MG . MG ? ? A U 24 A MG 104 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc3 metalc ? ? A C 26 OP1 ? ? ? 1_555 E MG . MG ? ? A C 26 A MG 104 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 245 1_555 ? ? ? ? ? ? ? 1.938 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 246 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 247 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 248 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 249 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc9 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 250 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 223 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 224 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 225 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 226 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc14 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 227 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc15 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 228 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 222 1_555 ? ? ? ? ? ? ? 2.839 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 229 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 230 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc19 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 244 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 104 A HOH 205 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 104 A HOH 206 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 104 A HOH 207 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 104 A HOH 208 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 209 1_555 ? ? ? ? ? ? ? 1.959 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 210 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 211 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 212 1_555 ? ? ? ? ? ? ? 1.978 ? ? metalc28 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 213 1_555 ? ? ? ? ? ? ? 2.043 ? ? hydrog1 hydrog ? ? A C 1 N3 A ? ? 1_555 A G 54 N1 ? ? A C 1 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 A ? ? 1_555 A G 54 O6 ? ? A C 1 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 A ? ? 1_555 A G 54 N2 ? ? A C 1 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 53 N1 ? ? A C 2 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 53 O6 ? ? A C 2 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 53 N2 ? ? A C 2 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 3 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 3 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 3 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 4 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 4 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 4 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 5 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 5 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 5 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 8 N6 ? ? ? 1_555 A G 45 N3 ? ? A A 8 A G 45 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A A 8 N7 ? ? ? 1_555 A G 45 N2 ? ? A A 8 A G 45 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 9 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 9 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 9 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 43 N3 ? ? A A 10 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 43 O4 ? ? A A 10 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 11 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 11 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 11 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 41 N1 ? ? A U 12 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 41 N6 ? ? A U 12 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 13 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 13 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 13 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 14 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 14 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 14 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 15 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 15 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 15 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 22 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 22 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 22 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 29 N7 ? ? A U 24 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 24 O2 ? ? ? 1_555 A A 29 N6 ? ? A U 24 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 25 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 25 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 25 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 26 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 26 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 26 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 27 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 27 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 27 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 28 N1 ? ? ? 1_555 A A 46 N6 ? ? A A 28 A A 46 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog61 hydrog ? ? A A 28 N6 ? ? ? 1_555 A A 46 N1 ? ? A A 28 A A 46 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog62 hydrog ? ? A G 30 N2 ? ? ? 1_555 A A 40 N3 ? ? A G 30 A A 40 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DU 6 ? A DU 6 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 90.2 ? 2 OP1 ? A DU 6 ? A DU 6 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 210 ? 1_555 96.9 ? 3 O ? G HOH . ? A HOH 209 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 210 ? 1_555 97.4 ? 4 OP1 ? A DU 6 ? A DU 6 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 87.8 ? 5 O ? G HOH . ? A HOH 209 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 176.1 ? 6 O ? G HOH . ? A HOH 210 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 86.1 ? 7 OP1 ? A DU 6 ? A DU 6 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 212 ? 1_555 90.6 ? 8 O ? G HOH . ? A HOH 209 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 212 ? 1_555 85.7 ? 9 O ? G HOH . ? A HOH 210 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 212 ? 1_555 171.9 ? 10 O ? G HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 212 ? 1_555 91.0 ? 11 OP1 ? A DU 6 ? A DU 6 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 213 ? 1_555 179.3 ? 12 O ? G HOH . ? A HOH 209 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 213 ? 1_555 90.4 ? 13 O ? G HOH . ? A HOH 210 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 213 ? 1_555 82.8 ? 14 O ? G HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 213 ? 1_555 91.5 ? 15 O ? G HOH . ? A HOH 212 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 213 ? 1_555 89.7 ? 16 OP2 ? A U 24 ? A U 24 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 OP1 ? A C 26 ? A C 26 ? 1_555 103.8 ? 17 OP2 ? A U 24 ? A U 24 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 90.7 ? 18 OP1 ? A C 26 ? A C 26 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 91.6 ? 19 OP2 ? A U 24 ? A U 24 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 75.4 ? 20 OP1 ? A C 26 ? A C 26 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 178.0 ? 21 O ? G HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 86.5 ? 22 OP2 ? A U 24 ? A U 24 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 207 ? 1_555 82.7 ? 23 OP1 ? A C 26 ? A C 26 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 207 ? 1_555 100.0 ? 24 O ? G HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 207 ? 1_555 167.7 ? 25 O ? G HOH . ? A HOH 206 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 207 ? 1_555 81.8 ? 26 OP2 ? A U 24 ? A U 24 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 159.4 ? 27 OP1 ? A C 26 ? A C 26 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 96.2 ? 28 O ? G HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 83.7 ? 29 O ? G HOH . ? A HOH 206 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 84.4 ? 30 O ? G HOH . ? A HOH 207 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 98.8 ? 31 O ? G HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 246 ? 1_555 177.1 ? 32 O ? G HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 247 ? 1_555 85.9 ? 33 O ? G HOH . ? A HOH 246 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 247 ? 1_555 92.1 ? 34 O ? G HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 92.2 ? 35 O ? G HOH . ? A HOH 246 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 89.9 ? 36 O ? G HOH . ? A HOH 247 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 87.6 ? 37 O ? G HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 249 ? 1_555 92.0 ? 38 O ? G HOH . ? A HOH 246 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 249 ? 1_555 89.8 ? 39 O ? G HOH . ? A HOH 247 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 249 ? 1_555 175.3 ? 40 O ? G HOH . ? A HOH 248 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 249 ? 1_555 96.6 ? 41 O ? G HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 250 ? 1_555 89.9 ? 42 O ? G HOH . ? A HOH 246 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 250 ? 1_555 87.9 ? 43 O ? G HOH . ? A HOH 247 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 250 ? 1_555 89.4 ? 44 O ? G HOH . ? A HOH 248 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 250 ? 1_555 176.3 ? 45 O ? G HOH . ? A HOH 249 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 250 ? 1_555 86.4 ? 46 O ? G HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 224 ? 1_555 85.1 ? 47 O ? G HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 225 ? 1_555 93.2 ? 48 O ? G HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 225 ? 1_555 175.4 ? 49 O ? G HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 85.2 ? 50 O ? G HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 72.3 ? 51 O ? G HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 111.9 ? 52 O ? G HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 1_555 159.2 ? 53 O ? G HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 1_555 74.2 ? 54 O ? G HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 1_555 107.3 ? 55 O ? G HOH . ? A HOH 226 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 1_555 90.2 ? 56 O ? G HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 1_555 76.8 ? 57 O ? G HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 1_555 70.0 ? 58 O ? G HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 1_555 105.4 ? 59 O ? G HOH . ? A HOH 226 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 1_555 139.2 ? 60 O ? G HOH . ? A HOH 227 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 1_555 93.9 ? 61 O ? G HOH . ? A HOH 222 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 229 ? 1_555 74.1 ? 62 O ? G HOH . ? A HOH 222 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 73.2 ? 63 O ? G HOH . ? A HOH 229 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 130.3 ? 64 O ? G HOH . ? A HOH 222 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 244 ? 1_555 59.5 ? 65 O ? G HOH . ? A HOH 229 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 244 ? 1_555 67.5 ? 66 O ? G HOH . ? A HOH 230 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 244 ? 1_555 63.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'BINDING SITE FOR RESIDUE MG A 101' AC2 Software A MG 102 ? 6 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software A MG 103 ? 4 'BINDING SITE FOR RESIDUE MG A 103' AC4 Software A MG 104 ? 7 'BINDING SITE FOR RESIDUE MG A 104' AC5 Software A MG 105 ? 6 'BINDING SITE FOR RESIDUE MG A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 245 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 246 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 247 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH A 248 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH A 249 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH A 250 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH A 223 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 224 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 225 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 226 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 227 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 228 . ? 1_555 ? 13 AC3 4 HOH G . ? HOH A 222 . ? 1_555 ? 14 AC3 4 HOH G . ? HOH A 229 . ? 1_555 ? 15 AC3 4 HOH G . ? HOH A 230 . ? 1_555 ? 16 AC3 4 HOH G . ? HOH A 244 . ? 1_555 ? 17 AC4 7 U A 24 ? U A 24 . ? 1_555 ? 18 AC4 7 C A 25 ? C A 25 . ? 1_555 ? 19 AC4 7 C A 26 ? C A 26 . ? 1_555 ? 20 AC4 7 HOH G . ? HOH A 205 . ? 1_555 ? 21 AC4 7 HOH G . ? HOH A 206 . ? 1_555 ? 22 AC4 7 HOH G . ? HOH A 207 . ? 1_555 ? 23 AC4 7 HOH G . ? HOH A 208 . ? 1_555 ? 24 AC5 6 DU A 6 ? DU A 6 . ? 1_555 ? 25 AC5 6 HOH G . ? HOH A 209 . ? 1_555 ? 26 AC5 6 HOH G . ? HOH A 210 . ? 1_555 ? 27 AC5 6 HOH G . ? HOH A 211 . ? 1_555 ? 28 AC5 6 HOH G . ? HOH A 212 . ? 1_555 ? 29 AC5 6 HOH G . ? HOH A 213 . ? 1_555 ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A A 17 ? A A 17 2 1 Y 1 A U 18 ? A U 18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DU OP3 O N N 73 DU P P N N 74 DU OP1 O N N 75 DU OP2 O N N 76 DU "O5'" O N N 77 DU "C5'" C N N 78 DU "C4'" C N R 79 DU "O4'" O N N 80 DU "C3'" C N S 81 DU "O3'" O N N 82 DU "C2'" C N N 83 DU "C1'" C N R 84 DU N1 N N N 85 DU C2 C N N 86 DU O2 O N N 87 DU N3 N N N 88 DU C4 C N N 89 DU O4 O N N 90 DU C5 C N N 91 DU C6 C N N 92 DU HOP3 H N N 93 DU HOP2 H N N 94 DU "H5'" H N N 95 DU "H5''" H N N 96 DU "H4'" H N N 97 DU "H3'" H N N 98 DU "HO3'" H N N 99 DU "H2'" H N N 100 DU "H2''" H N N 101 DU "H1'" H N N 102 DU H3 H N N 103 DU H5 H N N 104 DU H6 H N N 105 G OP3 O N N 106 G P P N N 107 G OP1 O N N 108 G OP2 O N N 109 G "O5'" O N N 110 G "C5'" C N N 111 G "C4'" C N R 112 G "O4'" O N N 113 G "C3'" C N S 114 G "O3'" O N N 115 G "C2'" C N R 116 G "O2'" O N N 117 G "C1'" C N R 118 G N9 N Y N 119 G C8 C Y N 120 G N7 N Y N 121 G C5 C Y N 122 G C6 C N N 123 G O6 O N N 124 G N1 N N N 125 G C2 C N N 126 G N2 N N N 127 G N3 N N N 128 G C4 C Y N 129 G HOP3 H N N 130 G HOP2 H N N 131 G "H5'" H N N 132 G "H5''" H N N 133 G "H4'" H N N 134 G "H3'" H N N 135 G "HO3'" H N N 136 G "H2'" H N N 137 G "HO2'" H N N 138 G "H1'" H N N 139 G H8 H N N 140 G H1 H N N 141 G H21 H N N 142 G H22 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 U OP3 O N N 148 U P P N N 149 U OP1 O N N 150 U OP2 O N N 151 U "O5'" O N N 152 U "C5'" C N N 153 U "C4'" C N R 154 U "O4'" O N N 155 U "C3'" C N S 156 U "O3'" O N N 157 U "C2'" C N R 158 U "O2'" O N N 159 U "C1'" C N R 160 U N1 N N N 161 U C2 C N N 162 U O2 O N N 163 U N3 N N N 164 U C4 C N N 165 U O4 O N N 166 U C5 C N N 167 U C6 C N N 168 U HOP3 H N N 169 U HOP2 H N N 170 U "H5'" H N N 171 U "H5''" H N N 172 U "H4'" H N N 173 U "H3'" H N N 174 U "HO3'" H N N 175 U "H2'" H N N 176 U "HO2'" H N N 177 U "H1'" H N N 178 U H3 H N N 179 U H5 H N N 180 U H6 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DU OP3 P sing N N 76 DU OP3 HOP3 sing N N 77 DU P OP1 doub N N 78 DU P OP2 sing N N 79 DU P "O5'" sing N N 80 DU OP2 HOP2 sing N N 81 DU "O5'" "C5'" sing N N 82 DU "C5'" "C4'" sing N N 83 DU "C5'" "H5'" sing N N 84 DU "C5'" "H5''" sing N N 85 DU "C4'" "O4'" sing N N 86 DU "C4'" "C3'" sing N N 87 DU "C4'" "H4'" sing N N 88 DU "O4'" "C1'" sing N N 89 DU "C3'" "O3'" sing N N 90 DU "C3'" "C2'" sing N N 91 DU "C3'" "H3'" sing N N 92 DU "O3'" "HO3'" sing N N 93 DU "C2'" "C1'" sing N N 94 DU "C2'" "H2'" sing N N 95 DU "C2'" "H2''" sing N N 96 DU "C1'" N1 sing N N 97 DU "C1'" "H1'" sing N N 98 DU N1 C2 sing N N 99 DU N1 C6 sing N N 100 DU C2 O2 doub N N 101 DU C2 N3 sing N N 102 DU N3 C4 sing N N 103 DU N3 H3 sing N N 104 DU C4 O4 doub N N 105 DU C4 C5 sing N N 106 DU C5 C6 doub N N 107 DU C5 H5 sing N N 108 DU C6 H6 sing N N 109 G OP3 P sing N N 110 G OP3 HOP3 sing N N 111 G P OP1 doub N N 112 G P OP2 sing N N 113 G P "O5'" sing N N 114 G OP2 HOP2 sing N N 115 G "O5'" "C5'" sing N N 116 G "C5'" "C4'" sing N N 117 G "C5'" "H5'" sing N N 118 G "C5'" "H5''" sing N N 119 G "C4'" "O4'" sing N N 120 G "C4'" "C3'" sing N N 121 G "C4'" "H4'" sing N N 122 G "O4'" "C1'" sing N N 123 G "C3'" "O3'" sing N N 124 G "C3'" "C2'" sing N N 125 G "C3'" "H3'" sing N N 126 G "O3'" "HO3'" sing N N 127 G "C2'" "O2'" sing N N 128 G "C2'" "C1'" sing N N 129 G "C2'" "H2'" sing N N 130 G "O2'" "HO2'" sing N N 131 G "C1'" N9 sing N N 132 G "C1'" "H1'" sing N N 133 G N9 C8 sing Y N 134 G N9 C4 sing Y N 135 G C8 N7 doub Y N 136 G C8 H8 sing N N 137 G N7 C5 sing Y N 138 G C5 C6 sing N N 139 G C5 C4 doub Y N 140 G C6 O6 doub N N 141 G C6 N1 sing N N 142 G N1 C2 sing N N 143 G N1 H1 sing N N 144 G C2 N2 sing N N 145 G C2 N3 doub N N 146 G N2 H21 sing N N 147 G N2 H22 sing N N 148 G N3 C4 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 U OP3 P sing N N 152 U OP3 HOP3 sing N N 153 U P OP1 doub N N 154 U P OP2 sing N N 155 U P "O5'" sing N N 156 U OP2 HOP2 sing N N 157 U "O5'" "C5'" sing N N 158 U "C5'" "C4'" sing N N 159 U "C5'" "H5'" sing N N 160 U "C5'" "H5''" sing N N 161 U "C4'" "O4'" sing N N 162 U "C4'" "C3'" sing N N 163 U "C4'" "H4'" sing N N 164 U "O4'" "C1'" sing N N 165 U "C3'" "O3'" sing N N 166 U "C3'" "C2'" sing N N 167 U "C3'" "H3'" sing N N 168 U "O3'" "HO3'" sing N N 169 U "C2'" "O2'" sing N N 170 U "C2'" "C1'" sing N N 171 U "C2'" "H2'" sing N N 172 U "O2'" "HO2'" sing N N 173 U "C1'" N1 sing N N 174 U "C1'" "H1'" sing N N 175 U N1 C2 sing N N 176 U N1 C6 sing N N 177 U C2 O2 doub N N 178 U C2 N3 sing N N 179 U N3 C4 sing N N 180 U N3 H3 sing N N 181 U C4 O4 doub N N 182 U C4 C5 sing N N 183 U C5 C6 doub N N 184 U C5 H5 sing N N 185 U C6 H6 sing N N 186 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4OJI 'double helix' 4OJI 'a-form double helix' 4OJI 'bulge loop' 4OJI 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 54 1_555 -0.203 -0.155 -0.229 7.545 -9.825 1.422 1 A_C1:G54_A A 1 ? A 54 ? 19 1 1 A C 2 1_555 A G 53 1_555 0.043 -0.070 -0.125 5.827 -12.336 0.718 2 A_C2:G53_A A 2 ? A 53 ? 19 1 1 A G 3 1_555 A C 52 1_555 -0.213 -0.136 0.179 -2.113 -11.797 0.740 3 A_G3:C52_A A 3 ? A 52 ? 19 1 1 A C 4 1_555 A G 51 1_555 0.309 -0.065 -0.057 6.228 -6.951 1.156 4 A_C4:G51_A A 4 ? A 51 ? 19 1 1 A C 5 1_555 A G 50 1_555 -0.132 -0.192 -0.242 15.958 1.986 -5.644 5 A_C5:G50_A A 5 ? A 50 ? 19 1 1 A C 25 1_555 A G 49 1_555 0.011 -0.036 -0.120 3.258 -7.056 0.612 6 A_C25:G49_A A 25 ? A 49 ? 19 1 1 A C 26 1_555 A G 48 1_555 0.178 -0.282 0.025 -2.147 -2.870 -3.211 7 A_C26:G48_A A 26 ? A 48 ? 19 1 1 A C 27 1_555 A G 47 1_555 -0.068 -0.095 -0.012 4.347 -11.204 0.202 8 A_C27:G47_A A 27 ? A 47 ? 19 1 1 A A 28 1_555 A A 46 1_555 -1.471 -1.285 0.332 16.396 -16.026 177.814 9 A_A28:A46_A A 28 ? A 46 ? 1 2 1 A A 8 1_555 A G 45 1_555 -6.881 -4.521 0.195 6.265 -6.344 -7.468 10 A_A8:G45_A A 8 ? A 45 ? 11 10 1 A C 9 1_555 A G 44 1_555 -0.015 -0.130 0.116 5.725 -10.018 0.414 11 A_C9:G44_A A 9 ? A 44 ? 19 1 1 A A 10 1_555 A U 43 1_555 0.014 -0.129 -0.016 -1.779 -14.004 6.322 12 A_A10:U43_A A 10 ? A 43 ? 20 1 1 A C 11 1_555 A G 42 1_555 -0.008 -0.052 0.167 -0.851 -14.790 -0.251 13 A_C11:G42_A A 11 ? A 42 ? 19 1 1 A U 12 1_555 A A 41 1_555 0.174 -0.130 0.293 -5.633 -7.824 8.161 14 A_U12:A41_A A 12 ? A 41 ? 20 1 1 A G 13 1_555 A C 31 1_555 -0.195 -0.032 0.375 -0.314 -14.471 -3.169 15 A_G13:C31_A A 13 ? A 31 ? 19 1 1 A C 14 1_555 A G 30 1_555 -0.156 -0.068 0.317 -2.426 -19.838 -4.100 16 A_C14:G30_A A 14 ? A 30 ? 19 1 1 A C 15 1_555 A G 19 1_555 -0.445 -0.095 0.284 -7.610 -4.916 -0.010 17 A_C15:G19_A A 15 ? A 19 ? 19 1 1 A C 20 1_555 A G 35 1_555 -0.130 -0.103 -0.084 9.238 -20.552 -0.012 18 A_C20:G35_A A 20 ? A 35 ? 19 1 1 A C 21 1_555 A G 34 1_555 0.057 -0.200 -0.313 9.804 -16.463 2.785 19 A_C21:G34_A A 21 ? A 34 ? 19 1 1 A G 22 1_555 A C 33 1_555 -0.125 -0.249 -0.043 -3.863 -10.339 1.943 20 A_G22:C33_A A 22 ? A 33 ? 19 1 1 A G 23 1_555 A C 32 1_555 -0.148 -0.105 -0.125 -10.235 -18.096 0.966 21 A_G23:C32_A A 23 ? A 32 ? 19 1 1 A U 24 1_555 A A 29 1_555 4.325 -2.448 -0.113 -7.745 1.237 -91.972 22 A_U24:A29_A A 24 ? A 29 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 54 1_555 A C 2 1_555 A G 53 1_555 -0.176 -1.579 3.386 -0.493 6.579 31.252 -4.051 0.232 3.002 12.044 0.902 31.923 1 AA_C1C2:G53G54_AA A 1 ? A 54 ? A 2 ? A 53 ? 1 A C 2 1_555 A G 53 1_555 A G 3 1_555 A C 52 1_555 0.006 -1.714 3.429 -3.318 9.878 28.879 -5.119 -0.642 2.693 19.041 6.396 30.664 2 AA_C2G3:C52G53_AA A 2 ? A 53 ? A 3 ? A 52 ? 1 A G 3 1_555 A C 52 1_555 A C 4 1_555 A G 51 1_555 -0.223 -1.575 3.117 0.749 4.209 32.847 -3.417 0.508 2.893 7.403 -1.317 33.116 3 AA_G3C4:G51C52_AA A 3 ? A 52 ? A 4 ? A 51 ? 1 A C 4 1_555 A G 51 1_555 A C 5 1_555 A G 50 1_555 -0.822 -1.627 3.118 -0.314 7.432 26.174 -5.117 1.678 2.576 16.004 0.675 27.193 4 AA_C4C5:G50G51_AA A 4 ? A 51 ? A 5 ? A 50 ? 1 A C 5 1_555 A G 50 1_555 A C 25 1_555 A G 49 1_555 -2.845 -0.916 3.246 -11.805 11.160 56.865 -1.535 2.252 3.504 11.463 12.126 58.954 5 AA_C5C25:G49G50_AA A 5 ? A 50 ? A 25 ? A 49 ? 1 A C 25 1_555 A G 49 1_555 A C 26 1_555 A G 48 1_555 -0.605 -2.040 3.394 -0.826 9.842 32.692 -4.964 0.906 2.698 17.007 1.427 34.112 6 AA_C25C26:G48G49_AA A 25 ? A 49 ? A 26 ? A 48 ? 1 A C 26 1_555 A G 48 1_555 A C 27 1_555 A G 47 1_555 1.083 -1.769 2.958 4.895 7.496 32.467 -4.120 -1.177 2.627 13.098 -8.554 33.647 7 AA_C26C27:G47G48_AA A 26 ? A 48 ? A 27 ? A 47 ? 1 A C 27 1_555 A G 47 1_555 A A 28 1_555 A A 46 1_555 -1.504 -2.870 -1.472 -145.278 101.750 91.692 -1.107 1.220 -1.345 51.088 72.944 178.166 8 AA_C27A28:A46G47_AA A 27 ? A 47 ? A 28 ? A 46 ? 1 A A 28 1_555 A A 46 1_555 A A 8 1_555 A G 45 1_555 3.040 -5.490 -0.926 150.430 -82.943 -32.036 1.606 -0.554 -5.362 42.907 77.819 -172.100 9 AA_A28A8:G45A46_AA A 28 ? A 46 ? A 8 ? A 45 ? 1 A A 8 1_555 A G 45 1_555 A C 9 1_555 A G 44 1_555 0.476 -0.831 3.438 -4.864 4.463 69.383 -0.894 -0.599 3.350 3.912 4.263 69.657 10 AA_A8C9:G44G45_AA A 8 ? A 45 ? A 9 ? A 44 ? 1 A C 9 1_555 A G 44 1_555 A A 10 1_555 A U 43 1_555 -0.233 -1.781 3.350 0.419 11.201 27.528 -5.648 0.536 2.449 22.397 -0.838 29.681 11 AA_C9A10:U43G44_AA A 9 ? A 44 ? A 10 ? A 43 ? 1 A A 10 1_555 A U 43 1_555 A C 11 1_555 A G 42 1_555 -0.579 -1.264 3.245 -2.812 11.772 31.357 -3.994 0.572 2.653 20.834 4.976 33.556 12 AA_A10C11:G42U43_AA A 10 ? A 43 ? A 11 ? A 42 ? 1 A C 11 1_555 A G 42 1_555 A U 12 1_555 A A 41 1_555 0.933 -0.833 3.345 4.203 5.998 30.673 -2.671 -0.919 3.225 11.141 -7.806 31.515 13 AA_C11U12:A41G42_AA A 11 ? A 42 ? A 12 ? A 41 ? 1 A U 12 1_555 A A 41 1_555 A G 13 1_555 A C 31 1_555 0.072 -2.291 2.959 -0.242 9.369 24.614 -6.992 -0.208 1.967 21.027 0.544 26.312 14 AA_U12G13:C31A41_AA A 12 ? A 41 ? A 13 ? A 31 ? 1 A G 13 1_555 A C 31 1_555 A C 14 1_555 A G 30 1_555 0.524 -2.213 3.174 2.190 -0.317 35.965 -3.534 -0.544 3.218 -0.512 -3.543 36.030 15 AA_G13C14:G30C31_AA A 13 ? A 31 ? A 14 ? A 30 ? 1 A C 14 1_555 A G 30 1_555 A C 15 1_555 A G 19 1_555 -0.454 -1.855 3.416 1.494 2.185 26.782 -4.556 1.366 3.228 4.703 -3.216 26.910 16 AA_C14C15:G19G30_AA A 14 ? A 30 ? A 15 ? A 19 ? 1 A C 20 1_555 A G 35 1_555 A C 21 1_555 A G 34 1_555 -0.342 -1.413 3.290 -0.695 7.884 34.590 -3.432 0.464 2.914 13.048 1.151 35.457 17 AA_C20C21:G34G35_AA A 20 ? A 35 ? A 21 ? A 34 ? 1 A C 21 1_555 A G 34 1_555 A G 22 1_555 A C 33 1_555 -0.403 -1.709 3.494 -3.636 16.885 29.676 -5.421 0.143 2.258 29.984 6.457 34.239 18 AA_C21G22:C33G34_AA A 21 ? A 34 ? A 22 ? A 33 ? 1 A G 22 1_555 A C 33 1_555 A G 23 1_555 A C 32 1_555 0.299 -1.970 3.432 1.617 11.533 31.298 -5.253 -0.266 2.577 20.509 -2.875 33.343 19 AA_G22G23:C32C33_AA A 22 ? A 33 ? A 23 ? A 32 ? 1 A G 23 1_555 A C 32 1_555 A U 24 1_555 A A 29 1_555 -1.393 -1.992 3.183 3.359 0.300 89.122 -1.425 1.059 3.135 0.214 -2.393 89.173 20 AA_G23U24:A29C32_AA A 23 ? A 32 ? A 24 ? A 29 ? # _atom_sites.entry_id 4OJI _atom_sites.fract_transf_matrix[1][1] 0.018057 _atom_sites.fract_transf_matrix[1][2] 0.010425 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020850 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005699 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_