data_4PDI # _entry.id 4PDI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4PDI pdb_00004pdi 10.2210/pdb4pdi/pdb WWPDB D_1000201188 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-01 2 'Structure model' 1 1 2023-09-27 3 'Structure model' 1 2 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 2 'Structure model' 'Refinement description' 6 2 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' database_2 5 2 'Structure model' entity_src_gen 6 2 'Structure model' pdbx_database_status 7 2 'Structure model' pdbx_entity_src_syn 8 2 'Structure model' pdbx_initial_refinement_model 9 2 'Structure model' pdbx_prerelease_seq 10 2 'Structure model' pdbx_struct_assembly 11 2 'Structure model' pdbx_struct_oper_list 12 2 'Structure model' refine_hist 13 3 'Structure model' pdbx_entry_details 14 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 5 2 'Structure model' '_pdbx_database_status.pdb_format_compatible' 6 2 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 7 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 8 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4PDI _pdbx_database_status.recvd_initial_deposition_date 2014-04-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4PCZ PDB . unspecified 4PD2 PDB . unspecified 4PDG PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coste, F.' 1 'Castaing, B.' 2 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher ? _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country UK _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full . _citation.journal_issue . _citation.journal_volume 42 _citation.language . _citation.page_first 10748 _citation.page_last 10761 _citation.title 'Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.' _citation.year 2014 _citation.database_id_CSD . _citation.pdbx_database_id_DOI 10.1093/nar/gku613 _citation.pdbx_database_id_PubMed 25143530 _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Biela, A.' 1 ? primary 'Coste, F.' 2 ? primary 'Culard, F.' 3 ? primary 'Guerin, M.' 4 ? primary 'Goffinont, S.' 5 ? primary 'Gasteiger, K.' 6 ? primary 'Ciesla, J.' 7 ? primary 'Winczura, A.' 8 ? primary 'Kazimierczuk, Z.' 9 ? primary 'Gasparutto, D.' 10 ? primary 'Carell, T.' 11 ? primary 'Tudek, B.' 12 ? primary 'Castaing, B.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Formamidopyrimidine-DNA glycosylase' 31116.217 1 3.2.2.23 ? ? ? 2 polymer syn ;DNA (5'-D(*CP*TP*CP*TP*TP*TP*(SOS)P*TP*TP*TP*CP*TP*CP*G)-3') ; 4309.889 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') ; 4355.884 1 ? ? ? ? 4 non-polymer syn 2-sulfanyl-1,9-dihydro-6H-purin-6-one 168.176 1 ? ? ? ? 5 water nat water 18.015 289 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Fapy-DNA glycosylase,DNA-(apurinic or apyrimidinic site) lyase MutM,AP lyase MutM' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYL LEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGK TGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK ; ;PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYL LEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGK TGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(DC)(DT)(DT)(DT)(SOS)(DT)(DT)(DT)(DC)(DT)(DC)(DG)' CTCTTTNTTTCTCG B ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DA)(DG)(DA)(DA)(DA)(DC)(DA)(DA)(DA)(DG)(DA)' GCGAGAAACAAAGA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-sulfanyl-1,9-dihydro-6H-purin-6-one 2ON 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLU n 1 3 LEU n 1 4 PRO n 1 5 GLU n 1 6 VAL n 1 7 GLU n 1 8 THR n 1 9 VAL n 1 10 ARG n 1 11 ARG n 1 12 GLU n 1 13 LEU n 1 14 GLU n 1 15 LYS n 1 16 ARG n 1 17 ILE n 1 18 VAL n 1 19 GLY n 1 20 GLN n 1 21 LYS n 1 22 ILE n 1 23 ILE n 1 24 SER n 1 25 ILE n 1 26 GLU n 1 27 ALA n 1 28 THR n 1 29 TYR n 1 30 PRO n 1 31 ARG n 1 32 MET n 1 33 VAL n 1 34 LEU n 1 35 THR n 1 36 GLY n 1 37 PHE n 1 38 GLU n 1 39 GLN n 1 40 LEU n 1 41 LYS n 1 42 LYS n 1 43 GLU n 1 44 LEU n 1 45 THR n 1 46 GLY n 1 47 LYS n 1 48 THR n 1 49 ILE n 1 50 GLN n 1 51 GLY n 1 52 ILE n 1 53 SER n 1 54 ARG n 1 55 ARG n 1 56 GLY n 1 57 LYS n 1 58 TYR n 1 59 LEU n 1 60 ILE n 1 61 PHE n 1 62 GLU n 1 63 ILE n 1 64 GLY n 1 65 ASP n 1 66 ASP n 1 67 PHE n 1 68 ARG n 1 69 LEU n 1 70 ILE n 1 71 SER n 1 72 HIS n 1 73 LEU n 1 74 ARG n 1 75 MET n 1 76 GLU n 1 77 GLY n 1 78 LYS n 1 79 TYR n 1 80 ARG n 1 81 LEU n 1 82 ALA n 1 83 THR n 1 84 LEU n 1 85 ASP n 1 86 ALA n 1 87 PRO n 1 88 ARG n 1 89 GLU n 1 90 LYS n 1 91 HIS n 1 92 ASP n 1 93 HIS n 1 94 LEU n 1 95 THR n 1 96 MET n 1 97 LYS n 1 98 PHE n 1 99 ALA n 1 100 ASP n 1 101 GLY n 1 102 GLN n 1 103 LEU n 1 104 ILE n 1 105 TYR n 1 106 ALA n 1 107 ASP n 1 108 VAL n 1 109 ARG n 1 110 LYS n 1 111 PHE n 1 112 GLY n 1 113 THR n 1 114 TRP n 1 115 GLU n 1 116 LEU n 1 117 ILE n 1 118 SER n 1 119 THR n 1 120 ASP n 1 121 GLN n 1 122 VAL n 1 123 LEU n 1 124 PRO n 1 125 TYR n 1 126 PHE n 1 127 LEU n 1 128 LYS n 1 129 LYS n 1 130 LYS n 1 131 ILE n 1 132 GLY n 1 133 PRO n 1 134 GLU n 1 135 PRO n 1 136 THR n 1 137 TYR n 1 138 GLU n 1 139 ASP n 1 140 PHE n 1 141 ASP n 1 142 GLU n 1 143 LYS n 1 144 LEU n 1 145 PHE n 1 146 ARG n 1 147 GLU n 1 148 LYS n 1 149 LEU n 1 150 ARG n 1 151 LYS n 1 152 SER n 1 153 THR n 1 154 LYS n 1 155 LYS n 1 156 ILE n 1 157 LYS n 1 158 PRO n 1 159 TYR n 1 160 LEU n 1 161 LEU n 1 162 GLU n 1 163 GLN n 1 164 THR n 1 165 LEU n 1 166 VAL n 1 167 ALA n 1 168 GLY n 1 169 LEU n 1 170 GLY n 1 171 ASN n 1 172 ILE n 1 173 TYR n 1 174 VAL n 1 175 ASP n 1 176 GLU n 1 177 VAL n 1 178 LEU n 1 179 TRP n 1 180 LEU n 1 181 ALA n 1 182 LYS n 1 183 ILE n 1 184 HIS n 1 185 PRO n 1 186 GLU n 1 187 LYS n 1 188 GLU n 1 189 THR n 1 190 ASN n 1 191 GLN n 1 192 LEU n 1 193 ILE n 1 194 GLU n 1 195 SER n 1 196 SER n 1 197 ILE n 1 198 HIS n 1 199 LEU n 1 200 LEU n 1 201 HIS n 1 202 ASP n 1 203 SER n 1 204 ILE n 1 205 ILE n 1 206 GLU n 1 207 ILE n 1 208 LEU n 1 209 GLN n 1 210 LYS n 1 211 ALA n 1 212 ILE n 1 213 LYS n 1 214 LEU n 1 215 GLY n 1 216 GLY n 1 217 SER n 1 218 SER n 1 219 ILE n 1 220 ARG n 1 221 THR n 1 222 TYR n 1 223 SER n 1 224 ALA n 1 225 LEU n 1 226 GLY n 1 227 SER n 1 228 THR n 1 229 GLY n 1 230 LYS n 1 231 MET n 1 232 GLN n 1 233 ASN n 1 234 GLU n 1 235 LEU n 1 236 GLN n 1 237 VAL n 1 238 TYR n 1 239 GLY n 1 240 LYS n 1 241 THR n 1 242 GLY n 1 243 GLU n 1 244 LYS n 1 245 CYS n 1 246 SER n 1 247 ARG n 1 248 CYS n 1 249 GLY n 1 250 ALA n 1 251 GLU n 1 252 ILE n 1 253 GLN n 1 254 LYS n 1 255 ILE n 1 256 LYS n 1 257 VAL n 1 258 ALA n 1 259 GLY n 1 260 ARG n 1 261 GLY n 1 262 THR n 1 263 HIS n 1 264 PHE n 1 265 CYS n 1 266 PRO n 1 267 VAL n 1 268 CYS n 1 269 GLN n 1 270 GLN n 1 271 LYS n 2 1 DC n 2 2 DT n 2 3 DC n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 SOS n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DC n 2 12 DT n 2 13 DC n 2 14 DG n 3 1 DG n 3 2 DC n 3 3 DG n 3 4 DA n 3 5 DG n 3 6 DA n 3 7 DA n 3 8 DA n 3 9 DC n 3 10 DA n 3 11 DA n 3 12 DA n 3 13 DG n 3 14 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 271 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mutM, fpg' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactococcus lactis subsp. cremoris' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1359 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 14 'synthetic construct' ? 32630 ? 3 1 sample 1 14 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2ON non-polymer . 2-sulfanyl-1,9-dihydro-6H-purin-6-one ? 'C5 H4 N4 O S' 168.176 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SOS 'DNA linking' . ;[(1R,2S,4R)-4-({2-AMINO-5-[BENZYL(FORMYL)AMINO]-6-OXO-1,6-DIHYDROPYRIMIDIN-4-YL}AMINO)-2-HYDROXYCYCLOPENTYL]METHYL DIHYDROGEN PHOSPHATE ; ? 'C18 H24 N5 O7 P' 453.386 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 MET 32 32 32 MET MET A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 TRP 114 114 114 TRP TRP A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 THR 153 153 153 THR THR A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 TYR 159 159 159 TYR TYR A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 TRP 179 179 179 TRP TRP A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 HIS 184 184 184 HIS HIS A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 GLN 191 191 191 GLN GLN A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 HIS 198 198 198 HIS HIS A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 HIS 201 201 201 HIS HIS A . n A 1 202 ASP 202 202 202 ASP ASP A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 ILE 204 204 204 ILE ILE A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 GLN 209 209 209 GLN GLN A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 SER 217 217 217 SER SER A . n A 1 218 SER 218 218 218 SER SER A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 ARG 220 220 220 ARG ARG A . n A 1 221 THR 221 221 ? ? ? A . n A 1 222 TYR 222 222 ? ? ? A . n A 1 223 SER 223 223 ? ? ? A . n A 1 224 ALA 224 224 224 ALA ALA A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 LYS 230 230 230 LYS LYS A . n A 1 231 MET 231 231 231 MET MET A . n A 1 232 GLN 232 232 232 GLN GLN A . n A 1 233 ASN 233 233 233 ASN ASN A . n A 1 234 GLU 234 234 234 GLU GLU A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 GLN 236 236 236 GLN GLN A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 GLY 239 239 239 GLY GLY A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 THR 241 241 241 THR THR A . n A 1 242 GLY 242 242 242 GLY GLY A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 CYS 245 245 245 CYS CYS A . n A 1 246 SER 246 246 246 SER SER A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 CYS 248 248 248 CYS CYS A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 GLU 251 251 251 GLU GLU A . n A 1 252 ILE 252 252 252 ILE ILE A . n A 1 253 GLN 253 253 253 GLN GLN A . n A 1 254 LYS 254 254 254 LYS LYS A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 LYS 256 256 256 LYS LYS A . n A 1 257 VAL 257 257 257 VAL VAL A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 GLY 261 261 261 GLY GLY A . n A 1 262 THR 262 262 262 THR THR A . n A 1 263 HIS 263 263 263 HIS HIS A . n A 1 264 PHE 264 264 264 PHE PHE A . n A 1 265 CYS 265 265 265 CYS CYS A . n A 1 266 PRO 266 266 266 PRO PRO A . n A 1 267 VAL 267 267 267 VAL VAL A . n A 1 268 CYS 268 268 268 CYS CYS A . n A 1 269 GLN 269 269 269 GLN GLN A . n A 1 270 GLN 270 270 270 GLN GLN A . n A 1 271 LYS 271 271 271 LYS LYS A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 SOS 7 7 7 SOS SOS B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DC 13 13 13 DC DC B . n B 2 14 DG 14 14 14 DG DG B . n C 3 1 DG 1 15 15 DG DG C . n C 3 2 DC 2 16 16 DC DC C . n C 3 3 DG 3 17 17 DG DG C . n C 3 4 DA 4 18 18 DA DA C . n C 3 5 DG 5 19 19 DG DG C . n C 3 6 DA 6 20 20 DA DA C . n C 3 7 DA 7 21 21 DA DA C . n C 3 8 DA 8 22 22 DA DA C . n C 3 9 DC 9 23 23 DC DC C . n C 3 10 DA 10 24 24 DA DA C . n C 3 11 DA 11 25 25 DA DA C . n C 3 12 DA 12 26 26 DA DA C . n C 3 13 DG 13 27 27 DG DG C . n C 3 14 DA 14 28 28 DA DA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 2ON 1 300 300 2ON LIG A . E 5 HOH 1 401 128 HOH HOH A . E 5 HOH 2 402 61 HOH HOH A . E 5 HOH 3 403 6 HOH HOH A . E 5 HOH 4 404 103 HOH HOH A . E 5 HOH 5 405 209 HOH HOH A . E 5 HOH 6 406 88 HOH HOH A . E 5 HOH 7 407 71 HOH HOH A . E 5 HOH 8 408 102 HOH HOH A . E 5 HOH 9 409 72 HOH HOH A . E 5 HOH 10 410 75 HOH HOH A . E 5 HOH 11 411 136 HOH HOH A . E 5 HOH 12 412 44 HOH HOH A . E 5 HOH 13 413 163 HOH HOH A . E 5 HOH 14 414 52 HOH HOH A . E 5 HOH 15 415 242 HOH HOH A . E 5 HOH 16 416 267 HOH HOH A . E 5 HOH 17 417 284 HOH HOH A . E 5 HOH 18 418 65 HOH HOH A . E 5 HOH 19 419 281 HOH HOH A . E 5 HOH 20 420 114 HOH HOH A . E 5 HOH 21 421 47 HOH HOH A . E 5 HOH 22 422 253 HOH HOH A . E 5 HOH 23 423 58 HOH HOH A . E 5 HOH 24 424 81 HOH HOH A . E 5 HOH 25 425 144 HOH HOH A . E 5 HOH 26 426 64 HOH HOH A . E 5 HOH 27 427 29 HOH HOH A . E 5 HOH 28 428 166 HOH HOH A . E 5 HOH 29 429 117 HOH HOH A . E 5 HOH 30 430 138 HOH HOH A . E 5 HOH 31 431 28 HOH HOH A . E 5 HOH 32 432 228 HOH HOH A . E 5 HOH 33 433 271 HOH HOH A . E 5 HOH 34 434 154 HOH HOH A . E 5 HOH 35 435 263 HOH HOH A . E 5 HOH 36 436 106 HOH HOH A . E 5 HOH 37 437 108 HOH HOH A . E 5 HOH 38 438 177 HOH HOH A . E 5 HOH 39 439 243 HOH HOH A . E 5 HOH 40 440 41 HOH HOH A . E 5 HOH 41 441 182 HOH HOH A . E 5 HOH 42 442 276 HOH HOH A . E 5 HOH 43 443 254 HOH HOH A . E 5 HOH 44 444 206 HOH HOH A . E 5 HOH 45 445 279 HOH HOH A . E 5 HOH 46 446 74 HOH HOH A . E 5 HOH 47 447 227 HOH HOH A . E 5 HOH 48 448 188 HOH HOH A . E 5 HOH 49 449 132 HOH HOH A . E 5 HOH 50 450 257 HOH HOH A . E 5 HOH 51 451 252 HOH HOH A . E 5 HOH 52 452 137 HOH HOH A . E 5 HOH 53 453 1 HOH HOH A . E 5 HOH 54 454 2 HOH HOH A . E 5 HOH 55 455 3 HOH HOH A . E 5 HOH 56 456 4 HOH HOH A . E 5 HOH 57 457 5 HOH HOH A . E 5 HOH 58 458 7 HOH HOH A . E 5 HOH 59 459 8 HOH HOH A . E 5 HOH 60 460 9 HOH HOH A . E 5 HOH 61 461 10 HOH HOH A . E 5 HOH 62 462 11 HOH HOH A . E 5 HOH 63 463 12 HOH HOH A . E 5 HOH 64 464 13 HOH HOH A . E 5 HOH 65 465 14 HOH HOH A . E 5 HOH 66 466 17 HOH HOH A . E 5 HOH 67 467 18 HOH HOH A . E 5 HOH 68 468 19 HOH HOH A . E 5 HOH 69 469 20 HOH HOH A . E 5 HOH 70 470 22 HOH HOH A . E 5 HOH 71 471 23 HOH HOH A . E 5 HOH 72 472 24 HOH HOH A . E 5 HOH 73 473 25 HOH HOH A . E 5 HOH 74 474 26 HOH HOH A . E 5 HOH 75 475 27 HOH HOH A . E 5 HOH 76 476 30 HOH HOH A . E 5 HOH 77 477 31 HOH HOH A . E 5 HOH 78 478 32 HOH HOH A . E 5 HOH 79 479 33 HOH HOH A . E 5 HOH 80 480 34 HOH HOH A . E 5 HOH 81 481 35 HOH HOH A . E 5 HOH 82 482 36 HOH HOH A . E 5 HOH 83 483 37 HOH HOH A . E 5 HOH 84 484 38 HOH HOH A . E 5 HOH 85 485 39 HOH HOH A . E 5 HOH 86 486 42 HOH HOH A . E 5 HOH 87 487 43 HOH HOH A . E 5 HOH 88 488 45 HOH HOH A . E 5 HOH 89 489 46 HOH HOH A . E 5 HOH 90 490 48 HOH HOH A . E 5 HOH 91 491 49 HOH HOH A . E 5 HOH 92 492 50 HOH HOH A . E 5 HOH 93 493 51 HOH HOH A . E 5 HOH 94 494 53 HOH HOH A . E 5 HOH 95 495 54 HOH HOH A . E 5 HOH 96 496 55 HOH HOH A . E 5 HOH 97 497 56 HOH HOH A . E 5 HOH 98 498 57 HOH HOH A . E 5 HOH 99 499 59 HOH HOH A . E 5 HOH 100 500 60 HOH HOH A . E 5 HOH 101 501 62 HOH HOH A . E 5 HOH 102 502 63 HOH HOH A . E 5 HOH 103 503 66 HOH HOH A . E 5 HOH 104 504 67 HOH HOH A . E 5 HOH 105 505 68 HOH HOH A . E 5 HOH 106 506 69 HOH HOH A . E 5 HOH 107 507 70 HOH HOH A . E 5 HOH 108 508 73 HOH HOH A . E 5 HOH 109 509 76 HOH HOH A . E 5 HOH 110 510 77 HOH HOH A . E 5 HOH 111 511 78 HOH HOH A . E 5 HOH 112 512 80 HOH HOH A . E 5 HOH 113 513 82 HOH HOH A . E 5 HOH 114 514 83 HOH HOH A . E 5 HOH 115 515 84 HOH HOH A . E 5 HOH 116 516 85 HOH HOH A . E 5 HOH 117 517 86 HOH HOH A . E 5 HOH 118 518 87 HOH HOH A . E 5 HOH 119 519 90 HOH HOH A . E 5 HOH 120 520 91 HOH HOH A . E 5 HOH 121 521 93 HOH HOH A . E 5 HOH 122 522 94 HOH HOH A . E 5 HOH 123 523 96 HOH HOH A . E 5 HOH 124 524 97 HOH HOH A . E 5 HOH 125 525 98 HOH HOH A . E 5 HOH 126 526 99 HOH HOH A . E 5 HOH 127 527 100 HOH HOH A . E 5 HOH 128 528 101 HOH HOH A . E 5 HOH 129 529 104 HOH HOH A . E 5 HOH 130 530 105 HOH HOH A . E 5 HOH 131 531 107 HOH HOH A . E 5 HOH 132 532 109 HOH HOH A . E 5 HOH 133 533 110 HOH HOH A . E 5 HOH 134 534 111 HOH HOH A . E 5 HOH 135 535 112 HOH HOH A . E 5 HOH 136 536 115 HOH HOH A . E 5 HOH 137 537 116 HOH HOH A . E 5 HOH 138 538 118 HOH HOH A . E 5 HOH 139 539 119 HOH HOH A . E 5 HOH 140 540 121 HOH HOH A . E 5 HOH 141 541 122 HOH HOH A . E 5 HOH 142 542 123 HOH HOH A . E 5 HOH 143 543 124 HOH HOH A . E 5 HOH 144 544 125 HOH HOH A . E 5 HOH 145 545 126 HOH HOH A . E 5 HOH 146 546 127 HOH HOH A . E 5 HOH 147 547 129 HOH HOH A . E 5 HOH 148 548 130 HOH HOH A . E 5 HOH 149 549 131 HOH HOH A . E 5 HOH 150 550 133 HOH HOH A . E 5 HOH 151 551 134 HOH HOH A . E 5 HOH 152 552 135 HOH HOH A . E 5 HOH 153 553 139 HOH HOH A . E 5 HOH 154 554 140 HOH HOH A . E 5 HOH 155 555 141 HOH HOH A . E 5 HOH 156 556 142 HOH HOH A . E 5 HOH 157 557 143 HOH HOH A . E 5 HOH 158 558 145 HOH HOH A . E 5 HOH 159 559 147 HOH HOH A . E 5 HOH 160 560 148 HOH HOH A . E 5 HOH 161 561 149 HOH HOH A . E 5 HOH 162 562 150 HOH HOH A . E 5 HOH 163 563 153 HOH HOH A . E 5 HOH 164 564 155 HOH HOH A . E 5 HOH 165 565 157 HOH HOH A . E 5 HOH 166 566 158 HOH HOH A . E 5 HOH 167 567 159 HOH HOH A . E 5 HOH 168 568 160 HOH HOH A . E 5 HOH 169 569 161 HOH HOH A . E 5 HOH 170 570 162 HOH HOH A . E 5 HOH 171 571 164 HOH HOH A . E 5 HOH 172 572 167 HOH HOH A . E 5 HOH 173 573 168 HOH HOH A . E 5 HOH 174 574 169 HOH HOH A . E 5 HOH 175 575 170 HOH HOH A . E 5 HOH 176 576 171 HOH HOH A . E 5 HOH 177 577 172 HOH HOH A . E 5 HOH 178 578 173 HOH HOH A . E 5 HOH 179 579 174 HOH HOH A . E 5 HOH 180 580 176 HOH HOH A . E 5 HOH 181 581 178 HOH HOH A . E 5 HOH 182 582 179 HOH HOH A . E 5 HOH 183 583 180 HOH HOH A . E 5 HOH 184 584 181 HOH HOH A . E 5 HOH 185 585 183 HOH HOH A . E 5 HOH 186 586 184 HOH HOH A . E 5 HOH 187 587 185 HOH HOH A . E 5 HOH 188 588 186 HOH HOH A . E 5 HOH 189 589 187 HOH HOH A . E 5 HOH 190 590 189 HOH HOH A . E 5 HOH 191 591 190 HOH HOH A . E 5 HOH 192 592 191 HOH HOH A . E 5 HOH 193 593 192 HOH HOH A . E 5 HOH 194 594 193 HOH HOH A . E 5 HOH 195 595 195 HOH HOH A . E 5 HOH 196 596 196 HOH HOH A . E 5 HOH 197 597 197 HOH HOH A . E 5 HOH 198 598 198 HOH HOH A . E 5 HOH 199 599 199 HOH HOH A . E 5 HOH 200 600 201 HOH HOH A . E 5 HOH 201 601 203 HOH HOH A . E 5 HOH 202 602 204 HOH HOH A . E 5 HOH 203 603 205 HOH HOH A . E 5 HOH 204 604 207 HOH HOH A . E 5 HOH 205 605 208 HOH HOH A . E 5 HOH 206 606 210 HOH HOH A . E 5 HOH 207 607 211 HOH HOH A . E 5 HOH 208 608 212 HOH HOH A . E 5 HOH 209 609 213 HOH HOH A . E 5 HOH 210 610 214 HOH HOH A . E 5 HOH 211 611 215 HOH HOH A . E 5 HOH 212 612 218 HOH HOH A . E 5 HOH 213 613 219 HOH HOH A . E 5 HOH 214 614 220 HOH HOH A . E 5 HOH 215 615 222 HOH HOH A . E 5 HOH 216 616 223 HOH HOH A . E 5 HOH 217 617 224 HOH HOH A . E 5 HOH 218 618 225 HOH HOH A . E 5 HOH 219 619 226 HOH HOH A . E 5 HOH 220 620 229 HOH HOH A . E 5 HOH 221 621 231 HOH HOH A . E 5 HOH 222 622 234 HOH HOH A . E 5 HOH 223 623 235 HOH HOH A . E 5 HOH 224 624 237 HOH HOH A . E 5 HOH 225 625 238 HOH HOH A . E 5 HOH 226 626 239 HOH HOH A . E 5 HOH 227 627 240 HOH HOH A . E 5 HOH 228 628 241 HOH HOH A . E 5 HOH 229 629 244 HOH HOH A . E 5 HOH 230 630 245 HOH HOH A . E 5 HOH 231 631 246 HOH HOH A . E 5 HOH 232 632 247 HOH HOH A . E 5 HOH 233 633 248 HOH HOH A . E 5 HOH 234 634 250 HOH HOH A . E 5 HOH 235 635 251 HOH HOH A . E 5 HOH 236 636 255 HOH HOH A . E 5 HOH 237 637 256 HOH HOH A . E 5 HOH 238 638 260 HOH HOH A . E 5 HOH 239 639 261 HOH HOH A . E 5 HOH 240 640 262 HOH HOH A . E 5 HOH 241 641 264 HOH HOH A . E 5 HOH 242 642 266 HOH HOH A . E 5 HOH 243 643 269 HOH HOH A . E 5 HOH 244 644 270 HOH HOH A . E 5 HOH 245 645 272 HOH HOH A . E 5 HOH 246 646 273 HOH HOH A . E 5 HOH 247 647 274 HOH HOH A . E 5 HOH 248 648 277 HOH HOH A . E 5 HOH 249 649 278 HOH HOH A . E 5 HOH 250 650 280 HOH HOH A . E 5 HOH 251 651 282 HOH HOH A . E 5 HOH 252 652 283 HOH HOH A . E 5 HOH 253 653 285 HOH HOH A . E 5 HOH 254 654 286 HOH HOH A . E 5 HOH 255 655 287 HOH HOH A . E 5 HOH 256 656 288 HOH HOH A . E 5 HOH 257 657 289 HOH HOH A . F 5 HOH 1 101 217 HOH HOH B . F 5 HOH 2 102 230 HOH HOH B . F 5 HOH 3 103 249 HOH HOH B . F 5 HOH 4 104 15 HOH HOH B . F 5 HOH 5 105 16 HOH HOH B . F 5 HOH 6 106 21 HOH HOH B . F 5 HOH 7 107 40 HOH HOH B . F 5 HOH 8 108 79 HOH HOH B . F 5 HOH 9 109 89 HOH HOH B . F 5 HOH 10 110 92 HOH HOH B . F 5 HOH 11 111 95 HOH HOH B . F 5 HOH 12 112 113 HOH HOH B . F 5 HOH 13 113 120 HOH HOH B . F 5 HOH 14 114 146 HOH HOH B . F 5 HOH 15 115 156 HOH HOH B . F 5 HOH 16 116 175 HOH HOH B . F 5 HOH 17 117 194 HOH HOH B . F 5 HOH 18 118 216 HOH HOH B . F 5 HOH 19 119 236 HOH HOH B . F 5 HOH 20 120 265 HOH HOH B . F 5 HOH 21 121 275 HOH HOH B . G 5 HOH 1 101 233 HOH HOH C . G 5 HOH 2 102 151 HOH HOH C . G 5 HOH 3 103 152 HOH HOH C . G 5 HOH 4 104 165 HOH HOH C . G 5 HOH 5 105 200 HOH HOH C . G 5 HOH 6 106 202 HOH HOH C . G 5 HOH 7 107 221 HOH HOH C . G 5 HOH 8 108 232 HOH HOH C . G 5 HOH 9 109 258 HOH HOH C . G 5 HOH 10 110 259 HOH HOH C . G 5 HOH 11 111 268 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 15 ? CE ? A LYS 15 CE 2 1 Y 1 A LYS 15 ? NZ ? A LYS 15 NZ 3 1 Y 1 A ARG 31 ? CZ ? A ARG 31 CZ 4 1 Y 1 A ARG 31 ? NH1 ? A ARG 31 NH1 5 1 Y 1 A ARG 31 ? NH2 ? A ARG 31 NH2 6 1 Y 1 A LYS 42 ? CD ? A LYS 42 CD 7 1 Y 1 A LYS 42 ? CE ? A LYS 42 CE 8 1 Y 1 A LYS 42 ? NZ ? A LYS 42 NZ 9 1 Y 1 A LYS 78 ? CD ? A LYS 78 CD 10 1 Y 1 A LYS 78 ? CE ? A LYS 78 CE 11 1 Y 1 A LYS 78 ? NZ ? A LYS 78 NZ 12 1 Y 1 A ARG 88 ? CG ? A ARG 88 CG 13 1 Y 1 A ARG 88 ? CD ? A ARG 88 CD 14 1 Y 1 A ARG 88 ? NE ? A ARG 88 NE 15 1 Y 1 A ARG 88 ? CZ ? A ARG 88 CZ 16 1 Y 1 A ARG 88 ? NH1 ? A ARG 88 NH1 17 1 Y 1 A ARG 88 ? NH2 ? A ARG 88 NH2 18 1 Y 1 A LYS 130 ? CE ? A LYS 130 CE 19 1 Y 1 A LYS 130 ? NZ ? A LYS 130 NZ 20 1 Y 1 A GLU 138 ? CG ? A GLU 138 CG 21 1 Y 1 A GLU 138 ? CD ? A GLU 138 CD 22 1 Y 1 A GLU 138 ? OE1 ? A GLU 138 OE1 23 1 Y 1 A GLU 138 ? OE2 ? A GLU 138 OE2 24 1 Y 1 A LYS 182 ? CE ? A LYS 182 CE 25 1 Y 1 A LYS 182 ? NZ ? A LYS 182 NZ 26 1 Y 1 A LYS 213 ? CD ? A LYS 213 CD 27 1 Y 1 A LYS 213 ? CE ? A LYS 213 CE 28 1 Y 1 A LYS 213 ? NZ ? A LYS 213 NZ 29 1 Y 1 A ARG 220 ? CG ? A ARG 220 CG 30 1 Y 1 A ARG 220 ? CD ? A ARG 220 CD 31 1 Y 1 A ARG 220 ? NE ? A ARG 220 NE 32 1 Y 1 A ARG 220 ? CZ ? A ARG 220 CZ 33 1 Y 1 A ARG 220 ? NH1 ? A ARG 220 NH1 34 1 Y 1 A ARG 220 ? NH2 ? A ARG 220 NH2 35 1 Y 1 A LYS 230 ? CE ? A LYS 230 CE 36 1 Y 1 A LYS 230 ? NZ ? A LYS 230 NZ 37 1 Y 1 A ARG 247 ? CG ? A ARG 247 CG 38 1 Y 1 A ARG 247 ? CD ? A ARG 247 CD 39 1 Y 1 A ARG 247 ? NE ? A ARG 247 NE 40 1 Y 1 A ARG 247 ? CZ ? A ARG 247 CZ 41 1 Y 1 A ARG 247 ? NH1 ? A ARG 247 NH1 42 1 Y 1 A ARG 247 ? NH2 ? A ARG 247 NH2 # _software.citation_id ? _software.classification refinement _software.compiler_name . _software.compiler_version . _software.contact_author . _software.contact_author_email . _software.date . _software.description . _software.dependencies . _software.hardware . _software.language . _software.location . _software.mods . _software.name PHENIX _software.os . _software.os_version . _software.type . _software.version '(phenix.refine: 1.8.4_1496)' _software.pdbx_ordinal 1 # _cell.entry_id 4PDI _cell.length_a 91.535 _cell.length_b 91.535 _cell.length_c 140.974 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PDI _symmetry.cell_setting . _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M . # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4PDI _exptl.crystals_number . _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 3.71 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 66.86 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details 'HEPES, SODIUM CITRATE' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2011-09-29 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54980 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 1.54980 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4PDI _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 47.67 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 66600 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 100 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 13.7 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 17 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared . _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all . _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.22 _reflns_shell.meanI_over_sigI_all . _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.number_measured_all . _reflns_shell.number_measured_obs . _reflns_shell.number_possible . _reflns_shell.number_unique_all . _reflns_shell.number_unique_obs . _reflns_shell.percent_possible_all 99.8 _reflns_shell.percent_possible_obs . _reflns_shell.Rmerge_F_all . _reflns_shell.Rmerge_F_obs . _reflns_shell.Rmerge_I_all . _reflns_shell.Rmerge_I_obs 0.705 _reflns_shell.meanI_over_sigI_gt . _reflns_shell.meanI_over_uI_all . _reflns_shell.meanI_over_uI_gt . _reflns_shell.number_measured_gt . _reflns_shell.number_unique_gt . _reflns_shell.percent_possible_gt . _reflns_shell.Rmerge_F_gt . _reflns_shell.Rmerge_I_gt . _reflns_shell.pdbx_redundancy 11.1 _reflns_shell.pdbx_Rsym_value . _reflns_shell.pdbx_chi_squared . _reflns_shell.pdbx_netI_over_sigmaI_all . _reflns_shell.pdbx_netI_over_sigmaI_obs . _reflns_shell.pdbx_Rrim_I_all . _reflns_shell.pdbx_Rpim_I_all . _reflns_shell.pdbx_rejects . _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.aniso_B[1][1] . _refine.aniso_B[1][2] . _refine.aniso_B[1][3] . _refine.aniso_B[2][2] . _refine.aniso_B[2][3] . _refine.aniso_B[3][3] . _refine.B_iso_max . _refine.B_iso_mean . _refine.B_iso_min . _refine.correlation_coeff_Fo_to_Fc . _refine.correlation_coeff_Fo_to_Fc_free . _refine.details . _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4PDI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 2.10 _refine.ls_d_res_low 47.67 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 66600 _refine.ls_number_reflns_R_free 3359 _refine.ls_number_reflns_R_work . _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 99.95 _refine.ls_percent_reflns_R_free 5.04 _refine.ls_R_factor_all . _refine.ls_R_factor_obs 0.1616 _refine.ls_R_factor_R_free 0.1902 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.1600 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B . _refine.overall_SU_ML 0.25 _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set . _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol . _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F 0.79 _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 3C58' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R . _refine.pdbx_overall_ESU_R_Free . _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii . _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error 19.19 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2120 _refine_hist.pdbx_number_atoms_nucleic_acid 576 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 289 _refine_hist.number_atoms_total 2996 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 47.67 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.008 . 2836 . f_bond_d . . 'X-RAY DIFFRACTION' . 1.075 . 3931 . f_angle_d . . 'X-RAY DIFFRACTION' . 18.969 . 1109 . f_dihedral_angle_d . . 'X-RAY DIFFRACTION' . 0.044 . 441 . f_chiral_restr . . 'X-RAY DIFFRACTION' . 0.005 . 403 . f_plane_restr . . # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 2.10 2.1316 . . 120 2639 99.00 . . . 0.3065 . 0.2582 . . . . . . . . 'X-RAY DIFFRACTION' 2.1316 2.1635 . . 133 2619 100.00 . . . 0.2981 . 0.2433 . . . . . . . . 'X-RAY DIFFRACTION' 2.1635 2.1973 . . 181 2603 100.00 . . . 0.2775 . 0.2165 . . . . . . . . 'X-RAY DIFFRACTION' 2.1973 2.2333 . . 172 2624 100.00 . . . 0.2696 . 0.2092 . . . . . . . . 'X-RAY DIFFRACTION' 2.2333 2.2718 . . 113 2656 100.00 . . . 0.2493 . 0.1925 . . . . . . . . 'X-RAY DIFFRACTION' 2.2718 2.3131 . . 125 2616 100.00 . . . 0.2315 . 0.1936 . . . . . . . . 'X-RAY DIFFRACTION' 2.3131 2.3576 . . 150 2657 100.00 . . . 0.2287 . 0.1887 . . . . . . . . 'X-RAY DIFFRACTION' 2.3576 2.4057 . . 133 2649 100.00 . . . 0.2277 . 0.1754 . . . . . . . . 'X-RAY DIFFRACTION' 2.4057 2.4580 . . 157 2606 100.00 . . . 0.2234 . 0.1789 . . . . . . . . 'X-RAY DIFFRACTION' 2.4580 2.5152 . . 118 2665 100.00 . . . 0.2116 . 0.1868 . . . . . . . . 'X-RAY DIFFRACTION' 2.5152 2.5781 . . 139 2615 100.00 . . . 0.2635 . 0.1814 . . . . . . . . 'X-RAY DIFFRACTION' 2.5781 2.6478 . . 131 2653 100.00 . . . 0.2387 . 0.1891 . . . . . . . . 'X-RAY DIFFRACTION' 2.6478 2.7257 . . 114 2669 100.00 . . . 0.2239 . 0.1944 . . . . . . . . 'X-RAY DIFFRACTION' 2.7257 2.8137 . . 137 2642 100.00 . . . 0.2273 . 0.1982 . . . . . . . . 'X-RAY DIFFRACTION' 2.8137 2.9142 . . 190 2576 100.00 . . . 0.2354 . 0.1880 . . . . . . . . 'X-RAY DIFFRACTION' 2.9142 3.0309 . . 132 2653 100.00 . . . 0.2522 . 0.1965 . . . . . . . . 'X-RAY DIFFRACTION' 3.0309 3.1688 . . 139 2644 100.00 . . . 0.2261 . 0.1774 . . . . . . . . 'X-RAY DIFFRACTION' 3.1688 3.3358 . . 156 2597 100.00 . . . 0.1740 . 0.1676 . . . . . . . . 'X-RAY DIFFRACTION' 3.3358 3.5448 . . 138 2669 100.00 . . . 0.1434 . 0.1365 . . . . . . . . 'X-RAY DIFFRACTION' 3.5448 3.8183 . . 145 2639 100.00 . . . 0.1692 . 0.1365 . . . . . . . . 'X-RAY DIFFRACTION' 3.8183 4.2024 . . 150 2621 100.00 . . . 0.1396 . 0.1234 . . . . . . . . 'X-RAY DIFFRACTION' 4.2024 4.8100 . . 136 2634 100.00 . . . 0.1345 . 0.1094 . . . . . . . . 'X-RAY DIFFRACTION' 4.8100 6.0581 . . 123 2643 100.00 . . . 0.1525 . 0.1239 . . . . . . . . 'X-RAY DIFFRACTION' 6.0581 47.6868 . . 127 2652 100.00 . . . 0.1519 . 0.1475 . . . . . . . . # _struct.entry_id 4PDI _struct.title 'Crystal structure of a complex between an inhibited LlFpg and a N7-Benzyl-Fapy-dG containing DNA' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4PDI _struct_keywords.text 'DNA GLYCOSYLASE, 2TX INHIBITOR, Hydrolase-DNA complex' _struct_keywords.pdbx_keywords Hydrolase/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP FPG_LACLC P42371 1 ;PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYDEDFDEKLFREKLRKSTKKIKPY LLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYG KTGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK ; 2 ? 2 PDB 4PDI 4PDI 2 ? 1 ? 3 PDB 4PDI 4PDI 3 ? 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4PDI A 1 ? 271 ? P42371 2 ? 273 ? 1 271 2 2 4PDI B 1 ? 14 ? 4PDI 1 ? 14 ? 1 14 3 3 4PDI C 1 ? 14 ? 4PDI 15 ? 28 ? 15 28 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4PDI _struct_ref_seq_dif.mon_id ? _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num ? _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P42371 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 139 _struct_ref_seq_dif.details deletion _struct_ref_seq_dif.pdbx_auth_seq_num ? _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4020 ? 1 MORE -22 ? 1 'SSA (A^2)' 15920 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 2 ? VAL A 18 ? GLU A 2 VAL A 18 1 ? 17 HELX_P HELX_P2 AA2 TYR A 29 ? VAL A 33 ? TYR A 29 VAL A 33 5 ? 5 HELX_P HELX_P3 AA3 GLY A 36 ? THR A 45 ? GLY A 36 THR A 45 1 ? 10 HELX_P HELX_P4 AA4 GLN A 121 ? LYS A 129 ? GLN A 121 LYS A 129 1 ? 9 HELX_P HELX_P5 AA5 ASP A 141 ? LYS A 151 ? ASP A 141 LYS A 151 1 ? 11 HELX_P HELX_P6 AA6 LYS A 155 ? GLU A 162 ? LYS A 155 GLU A 162 1 ? 8 HELX_P HELX_P7 AA7 GLY A 170 ? ALA A 181 ? GLY A 170 ALA A 181 1 ? 12 HELX_P HELX_P8 AA8 GLU A 188 ? LEU A 192 ? GLU A 188 LEU A 192 5 ? 5 HELX_P HELX_P9 AA9 ILE A 193 ? LEU A 214 ? ILE A 193 LEU A 214 1 ? 22 HELX_P HELX_P10 AB1 LYS A 230 ? LEU A 235 ? LYS A 230 LEU A 235 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 245 SG ? ? ? 1_555 A CYS 265 SG ? ? A CYS 245 A CYS 265 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? A CYS 268 SG ? ? ? 1_555 D 2ON . S2 ? ? A CYS 268 A 2ON 300 1_555 ? ? ? ? ? ? ? 2.012 ? ? covale1 covale both ? B DT 6 "O3'" ? ? ? 1_555 B SOS 7 P ? ? B DT 6 B SOS 7 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale2 covale both ? B SOS 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B SOS 7 B DT 8 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 14 N1 ? ? B DT 2 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 14 N6 ? ? B DT 2 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 13 N1 ? ? B DC 3 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 13 O6 ? ? B DC 3 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 13 N2 ? ? B DC 3 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 12 N1 ? ? B DT 4 C DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 4 C DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 5 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 5 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 6 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 6 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 8 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 8 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 9 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 9 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 10 C DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 10 C DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DC 11 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DC 11 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 11 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 12 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 12 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 13 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 13 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 13 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 14 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 14 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 14 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 245 ? CYS A 265 ? CYS A 245 ? 1_555 CYS A 265 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 2ON D . ? CYS A 268 ? 2ON A 300 ? 1_555 CYS A 268 ? 1_555 S2 SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 24 ? ALA A 27 ? SER A 24 ALA A 27 AA1 2 ASP A 92 ? LYS A 97 ? ASP A 92 LYS A 97 AA1 3 GLN A 102 ? ALA A 106 ? GLN A 102 ALA A 106 AA1 4 LYS A 78 ? ALA A 82 ? LYS A 78 ALA A 82 AA2 1 ILE A 49 ? ARG A 55 ? ILE A 49 ARG A 55 AA2 2 TYR A 58 ? ILE A 63 ? TYR A 58 ILE A 63 AA2 3 PHE A 67 ? HIS A 72 ? PHE A 67 HIS A 72 AA2 4 THR A 113 ? SER A 118 ? THR A 113 SER A 118 AA3 1 GLN A 253 ? VAL A 257 ? GLN A 253 VAL A 257 AA3 2 ARG A 260 ? PHE A 264 ? ARG A 260 PHE A 264 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 24 ? N SER A 24 O LYS A 97 ? O LYS A 97 AA1 2 3 N HIS A 93 ? N HIS A 93 O TYR A 105 ? O TYR A 105 AA1 3 4 O ALA A 106 ? O ALA A 106 N LYS A 78 ? N LYS A 78 AA2 1 2 N SER A 53 ? N SER A 53 O ILE A 60 ? O ILE A 60 AA2 2 3 N LEU A 59 ? N LEU A 59 O SER A 71 ? O SER A 71 AA2 3 4 N ARG A 68 ? N ARG A 68 O ILE A 117 ? O ILE A 117 AA3 1 2 N GLN A 253 ? N GLN A 253 O PHE A 264 ? O PHE A 264 # _pdbx_entry_details.entry_id 4PDI _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 26 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 531 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 6 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 SOS _pdbx_validate_rmsd_angle.auth_seq_id_2 7 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 SOS _pdbx_validate_rmsd_angle.auth_seq_id_3 7 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 120.10 _pdbx_validate_rmsd_angle.angle_target_value 110.50 _pdbx_validate_rmsd_angle.angle_deviation 9.60 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 74 ? ? 47.85 -123.45 2 1 GLU A 76 ? ? -151.32 30.21 3 1 ASP A 107 ? ? -164.77 101.76 4 1 SER A 246 ? ? 58.86 15.96 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' . refined -3.2839 7.7776 11.7015 0.2446 . 0.0188 . 0.0286 . 0.2244 . 0.0167 . 0.3732 . 1.0569 . 1.1760 . -0.6275 . 2.0542 . -0.4613 . 1.7845 . -0.0167 . -0.1218 . -0.2606 . -0.1454 . -0.1005 . -0.5278 . 0.0308 . 0.1258 . 0.1228 . 2 'X-RAY DIFFRACTION' . refined -5.0002 16.2666 16.1207 0.2621 . -0.0178 . -0.0042 . 0.1869 . -0.0129 . 0.2739 . 1.7633 . 0.4193 . -0.7971 . 1.6545 . -0.4823 . 1.3934 . 0.1712 . -0.1501 . 0.1426 . 0.0982 . -0.2314 . -0.2280 . -0.2527 . 0.0895 . 0.0635 . 3 'X-RAY DIFFRACTION' . refined -7.2046 7.9738 3.7682 0.2421 . 0.0315 . 0.0368 . 0.2139 . -0.0201 . 0.2775 . 3.5961 . -0.3005 . -1.1957 . 1.2445 . -0.2485 . 1.6697 . -0.0020 . 0.2436 . -0.0156 . -0.1834 . -0.0314 . -0.2155 . 0.0966 . -0.0255 . 0.0409 . 4 'X-RAY DIFFRACTION' . refined -11.0408 9.9021 26.9183 0.3272 . -0.0369 . -0.0261 . 0.2914 . -0.0148 . 0.2904 . 0.9169 . 0.8219 . -0.6458 . 1.8605 . -1.2990 . 2.0680 . 0.1881 . -0.2114 . -0.0122 . 0.4343 . -0.2091 . -0.1707 . -0.2925 . 0.1267 . 0.0139 . 5 'X-RAY DIFFRACTION' . refined -23.1294 -5.9938 30.3680 0.3152 . -0.0860 . 0.0129 . 0.3122 . -0.0199 . 0.3230 . 1.5594 . 0.3989 . 0.3630 . 1.8292 . 0.1709 . 3.3643 . 0.0978 . -0.2290 . -0.0206 . 0.2093 . -0.1978 . 0.1334 . 0.2562 . -0.4294 . 0.1082 . 6 'X-RAY DIFFRACTION' . refined -12.6915 -10.5597 30.5755 0.4018 . -0.0360 . -0.0208 . 0.2555 . 0.0307 . 0.3952 . 4.0303 . 1.0523 . -2.6783 . 1.8009 . -1.2691 . 4.4908 . -0.1873 . -0.2870 . -0.3271 . 0.1956 . -0.0640 . -0.3251 . 0.5696 . 0.1715 . 0.2362 . 7 'X-RAY DIFFRACTION' . refined -9.9731 -11.0751 13.0703 0.4732 . -0.0122 . 0.0607 . 0.3073 . -0.0213 . 0.4363 . 6.8719 . 3.6451 . -1.3095 . 3.3916 . 0.3011 . 0.9921 . -0.4432 . 0.4641 . -0.5281 . -0.7094 . 0.1900 . -0.5902 . 0.4044 . -0.0065 . 0.2629 . 8 'X-RAY DIFFRACTION' . refined -25.3874 -20.0498 16.4883 0.4810 . -0.1497 . 0.0655 . 0.3969 . -0.0426 . 0.4232 . 3.5555 . 1.0142 . -2.4874 . 8.8236 . 2.7581 . 4.4850 . -0.2663 . 0.0164 . -0.8913 . -0.0089 . -0.1919 . 0.0288 . 0.7853 . -0.4095 . 0.3985 . 9 'X-RAY DIFFRACTION' . refined -27.6264 -14.3717 22.2952 0.4112 . -0.1318 . 0.0493 . 0.3479 . -0.0372 . 0.3915 . 1.4371 . 0.7217 . -1.0046 . 5.0786 . -2.4875 . 3.6373 . -0.0077 . 0.1020 . -0.2694 . 0.4303 . -0.1856 . 0.2560 . 0.3809 . -0.3546 . 0.2107 . # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 . . . . . . . . . ;chain 'A' and (resid 1 through 32 ) ; 2 'X-RAY DIFFRACTION' 2 . . . . . . . . . ;chain 'A' and (resid 33 through 72 ) ; 3 'X-RAY DIFFRACTION' 3 . . . . . . . . . ;chain 'A' and (resid 73 through 112 ) ; 4 'X-RAY DIFFRACTION' 4 . . . . . . . . . ;chain 'A' and (resid 113 through 141 ) ; 5 'X-RAY DIFFRACTION' 5 . . . . . . . . . ;chain 'A' and (resid 142 through 193 ) ; 6 'X-RAY DIFFRACTION' 6 . . . . . . . . . ;chain 'A' and (resid 194 through 213 ) ; 7 'X-RAY DIFFRACTION' 7 . . . . . . . . . ;chain 'A' and (resid 214 through 239 ) ; 8 'X-RAY DIFFRACTION' 8 . . . . . . . . . ;chain 'A' and (resid 240 through 257 ) ; 9 'X-RAY DIFFRACTION' 9 . . . . . . . . . ;chain 'A' and (resid 258 through 271 ) ; # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 576 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.27 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 221 ? A THR 221 2 1 Y 1 A TYR 222 ? A TYR 222 3 1 Y 1 A SER 223 ? A SER 223 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2ON C6 C N N 1 2ON N1 N N N 2 2ON C2 C N N 3 2ON N3 N N N 4 2ON C4 C Y N 5 2ON C5 C Y N 6 2ON N9 N Y N 7 2ON C8 C Y N 8 2ON N7 N Y N 9 2ON O6 O N N 10 2ON S2 S N N 11 2ON HN1 H N N 12 2ON HS2 H N N 13 2ON HC8 H N N 14 2ON HN9 H N N 15 ALA N N N N 16 ALA CA C N S 17 ALA C C N N 18 ALA O O N N 19 ALA CB C N N 20 ALA OXT O N N 21 ALA H H N N 22 ALA H2 H N N 23 ALA HA H N N 24 ALA HB1 H N N 25 ALA HB2 H N N 26 ALA HB3 H N N 27 ALA HXT H N N 28 ARG N N N N 29 ARG CA C N S 30 ARG C C N N 31 ARG O O N N 32 ARG CB C N N 33 ARG CG C N N 34 ARG CD C N N 35 ARG NE N N N 36 ARG CZ C N N 37 ARG NH1 N N N 38 ARG NH2 N N N 39 ARG OXT O N N 40 ARG H H N N 41 ARG H2 H N N 42 ARG HA H N N 43 ARG HB2 H N N 44 ARG HB3 H N N 45 ARG HG2 H N N 46 ARG HG3 H N N 47 ARG HD2 H N N 48 ARG HD3 H N N 49 ARG HE H N N 50 ARG HH11 H N N 51 ARG HH12 H N N 52 ARG HH21 H N N 53 ARG HH22 H N N 54 ARG HXT H N N 55 ASN N N N N 56 ASN CA C N S 57 ASN C C N N 58 ASN O O N N 59 ASN CB C N N 60 ASN CG C N N 61 ASN OD1 O N N 62 ASN ND2 N N N 63 ASN OXT O N N 64 ASN H H N N 65 ASN H2 H N N 66 ASN HA H N N 67 ASN HB2 H N N 68 ASN HB3 H N N 69 ASN HD21 H N N 70 ASN HD22 H N N 71 ASN HXT H N N 72 ASP N N N N 73 ASP CA C N S 74 ASP C C N N 75 ASP O O N N 76 ASP CB C N N 77 ASP CG C N N 78 ASP OD1 O N N 79 ASP OD2 O N N 80 ASP OXT O N N 81 ASP H H N N 82 ASP H2 H N N 83 ASP HA H N N 84 ASP HB2 H N N 85 ASP HB3 H N N 86 ASP HD2 H N N 87 ASP HXT H N N 88 CYS N N N N 89 CYS CA C N R 90 CYS C C N N 91 CYS O O N N 92 CYS CB C N N 93 CYS SG S N N 94 CYS OXT O N N 95 CYS H H N N 96 CYS H2 H N N 97 CYS HA H N N 98 CYS HB2 H N N 99 CYS HB3 H N N 100 CYS HG H N N 101 CYS HXT H N N 102 DA OP3 O N N 103 DA P P N N 104 DA OP1 O N N 105 DA OP2 O N N 106 DA "O5'" O N N 107 DA "C5'" C N N 108 DA "C4'" C N R 109 DA "O4'" O N N 110 DA "C3'" C N S 111 DA "O3'" O N N 112 DA "C2'" C N N 113 DA "C1'" C N R 114 DA N9 N Y N 115 DA C8 C Y N 116 DA N7 N Y N 117 DA C5 C Y N 118 DA C6 C Y N 119 DA N6 N N N 120 DA N1 N Y N 121 DA C2 C Y N 122 DA N3 N Y N 123 DA C4 C Y N 124 DA HOP3 H N N 125 DA HOP2 H N N 126 DA "H5'" H N N 127 DA "H5''" H N N 128 DA "H4'" H N N 129 DA "H3'" H N N 130 DA "HO3'" H N N 131 DA "H2'" H N N 132 DA "H2''" H N N 133 DA "H1'" H N N 134 DA H8 H N N 135 DA H61 H N N 136 DA H62 H N N 137 DA H2 H N N 138 DC OP3 O N N 139 DC P P N N 140 DC OP1 O N N 141 DC OP2 O N N 142 DC "O5'" O N N 143 DC "C5'" C N N 144 DC "C4'" C N R 145 DC "O4'" O N N 146 DC "C3'" C N S 147 DC "O3'" O N N 148 DC "C2'" C N N 149 DC "C1'" C N R 150 DC N1 N N N 151 DC C2 C N N 152 DC O2 O N N 153 DC N3 N N N 154 DC C4 C N N 155 DC N4 N N N 156 DC C5 C N N 157 DC C6 C N N 158 DC HOP3 H N N 159 DC HOP2 H N N 160 DC "H5'" H N N 161 DC "H5''" H N N 162 DC "H4'" H N N 163 DC "H3'" H N N 164 DC "HO3'" H N N 165 DC "H2'" H N N 166 DC "H2''" H N N 167 DC "H1'" H N N 168 DC H41 H N N 169 DC H42 H N N 170 DC H5 H N N 171 DC H6 H N N 172 DG OP3 O N N 173 DG P P N N 174 DG OP1 O N N 175 DG OP2 O N N 176 DG "O5'" O N N 177 DG "C5'" C N N 178 DG "C4'" C N R 179 DG "O4'" O N N 180 DG "C3'" C N S 181 DG "O3'" O N N 182 DG "C2'" C N N 183 DG "C1'" C N R 184 DG N9 N Y N 185 DG C8 C Y N 186 DG N7 N Y N 187 DG C5 C Y N 188 DG C6 C N N 189 DG O6 O N N 190 DG N1 N N N 191 DG C2 C N N 192 DG N2 N N N 193 DG N3 N N N 194 DG C4 C Y N 195 DG HOP3 H N N 196 DG HOP2 H N N 197 DG "H5'" H N N 198 DG "H5''" H N N 199 DG "H4'" H N N 200 DG "H3'" H N N 201 DG "HO3'" H N N 202 DG "H2'" H N N 203 DG "H2''" H N N 204 DG "H1'" H N N 205 DG H8 H N N 206 DG H1 H N N 207 DG H21 H N N 208 DG H22 H N N 209 DT OP3 O N N 210 DT P P N N 211 DT OP1 O N N 212 DT OP2 O N N 213 DT "O5'" O N N 214 DT "C5'" C N N 215 DT "C4'" C N R 216 DT "O4'" O N N 217 DT "C3'" C N S 218 DT "O3'" O N N 219 DT "C2'" C N N 220 DT "C1'" C N R 221 DT N1 N N N 222 DT C2 C N N 223 DT O2 O N N 224 DT N3 N N N 225 DT C4 C N N 226 DT O4 O N N 227 DT C5 C N N 228 DT C7 C N N 229 DT C6 C N N 230 DT HOP3 H N N 231 DT HOP2 H N N 232 DT "H5'" H N N 233 DT "H5''" H N N 234 DT "H4'" H N N 235 DT "H3'" H N N 236 DT "HO3'" H N N 237 DT "H2'" H N N 238 DT "H2''" H N N 239 DT "H1'" H N N 240 DT H3 H N N 241 DT H71 H N N 242 DT H72 H N N 243 DT H73 H N N 244 DT H6 H N N 245 GLN N N N N 246 GLN CA C N S 247 GLN C C N N 248 GLN O O N N 249 GLN CB C N N 250 GLN CG C N N 251 GLN CD C N N 252 GLN OE1 O N N 253 GLN NE2 N N N 254 GLN OXT O N N 255 GLN H H N N 256 GLN H2 H N N 257 GLN HA H N N 258 GLN HB2 H N N 259 GLN HB3 H N N 260 GLN HG2 H N N 261 GLN HG3 H N N 262 GLN HE21 H N N 263 GLN HE22 H N N 264 GLN HXT H N N 265 GLU N N N N 266 GLU CA C N S 267 GLU C C N N 268 GLU O O N N 269 GLU CB C N N 270 GLU CG C N N 271 GLU CD C N N 272 GLU OE1 O N N 273 GLU OE2 O N N 274 GLU OXT O N N 275 GLU H H N N 276 GLU H2 H N N 277 GLU HA H N N 278 GLU HB2 H N N 279 GLU HB3 H N N 280 GLU HG2 H N N 281 GLU HG3 H N N 282 GLU HE2 H N N 283 GLU HXT H N N 284 GLY N N N N 285 GLY CA C N N 286 GLY C C N N 287 GLY O O N N 288 GLY OXT O N N 289 GLY H H N N 290 GLY H2 H N N 291 GLY HA2 H N N 292 GLY HA3 H N N 293 GLY HXT H N N 294 HIS N N N N 295 HIS CA C N S 296 HIS C C N N 297 HIS O O N N 298 HIS CB C N N 299 HIS CG C Y N 300 HIS ND1 N Y N 301 HIS CD2 C Y N 302 HIS CE1 C Y N 303 HIS NE2 N Y N 304 HIS OXT O N N 305 HIS H H N N 306 HIS H2 H N N 307 HIS HA H N N 308 HIS HB2 H N N 309 HIS HB3 H N N 310 HIS HD1 H N N 311 HIS HD2 H N N 312 HIS HE1 H N N 313 HIS HE2 H N N 314 HIS HXT H N N 315 HOH O O N N 316 HOH H1 H N N 317 HOH H2 H N N 318 ILE N N N N 319 ILE CA C N S 320 ILE C C N N 321 ILE O O N N 322 ILE CB C N S 323 ILE CG1 C N N 324 ILE CG2 C N N 325 ILE CD1 C N N 326 ILE OXT O N N 327 ILE H H N N 328 ILE H2 H N N 329 ILE HA H N N 330 ILE HB H N N 331 ILE HG12 H N N 332 ILE HG13 H N N 333 ILE HG21 H N N 334 ILE HG22 H N N 335 ILE HG23 H N N 336 ILE HD11 H N N 337 ILE HD12 H N N 338 ILE HD13 H N N 339 ILE HXT H N N 340 LEU N N N N 341 LEU CA C N S 342 LEU C C N N 343 LEU O O N N 344 LEU CB C N N 345 LEU CG C N N 346 LEU CD1 C N N 347 LEU CD2 C N N 348 LEU OXT O N N 349 LEU H H N N 350 LEU H2 H N N 351 LEU HA H N N 352 LEU HB2 H N N 353 LEU HB3 H N N 354 LEU HG H N N 355 LEU HD11 H N N 356 LEU HD12 H N N 357 LEU HD13 H N N 358 LEU HD21 H N N 359 LEU HD22 H N N 360 LEU HD23 H N N 361 LEU HXT H N N 362 LYS N N N N 363 LYS CA C N S 364 LYS C C N N 365 LYS O O N N 366 LYS CB C N N 367 LYS CG C N N 368 LYS CD C N N 369 LYS CE C N N 370 LYS NZ N N N 371 LYS OXT O N N 372 LYS H H N N 373 LYS H2 H N N 374 LYS HA H N N 375 LYS HB2 H N N 376 LYS HB3 H N N 377 LYS HG2 H N N 378 LYS HG3 H N N 379 LYS HD2 H N N 380 LYS HD3 H N N 381 LYS HE2 H N N 382 LYS HE3 H N N 383 LYS HZ1 H N N 384 LYS HZ2 H N N 385 LYS HZ3 H N N 386 LYS HXT H N N 387 MET N N N N 388 MET CA C N S 389 MET C C N N 390 MET O O N N 391 MET CB C N N 392 MET CG C N N 393 MET SD S N N 394 MET CE C N N 395 MET OXT O N N 396 MET H H N N 397 MET H2 H N N 398 MET HA H N N 399 MET HB2 H N N 400 MET HB3 H N N 401 MET HG2 H N N 402 MET HG3 H N N 403 MET HE1 H N N 404 MET HE2 H N N 405 MET HE3 H N N 406 MET HXT H N N 407 PHE N N N N 408 PHE CA C N S 409 PHE C C N N 410 PHE O O N N 411 PHE CB C N N 412 PHE CG C Y N 413 PHE CD1 C Y N 414 PHE CD2 C Y N 415 PHE CE1 C Y N 416 PHE CE2 C Y N 417 PHE CZ C Y N 418 PHE OXT O N N 419 PHE H H N N 420 PHE H2 H N N 421 PHE HA H N N 422 PHE HB2 H N N 423 PHE HB3 H N N 424 PHE HD1 H N N 425 PHE HD2 H N N 426 PHE HE1 H N N 427 PHE HE2 H N N 428 PHE HZ H N N 429 PHE HXT H N N 430 PRO N N N N 431 PRO CA C N S 432 PRO C C N N 433 PRO O O N N 434 PRO CB C N N 435 PRO CG C N N 436 PRO CD C N N 437 PRO OXT O N N 438 PRO H H N N 439 PRO HA H N N 440 PRO HB2 H N N 441 PRO HB3 H N N 442 PRO HG2 H N N 443 PRO HG3 H N N 444 PRO HD2 H N N 445 PRO HD3 H N N 446 PRO HXT H N N 447 SER N N N N 448 SER CA C N S 449 SER C C N N 450 SER O O N N 451 SER CB C N N 452 SER OG O N N 453 SER OXT O N N 454 SER H H N N 455 SER H2 H N N 456 SER HA H N N 457 SER HB2 H N N 458 SER HB3 H N N 459 SER HG H N N 460 SER HXT H N N 461 SOS OP3 O N N 462 SOS C15 C Y N 463 SOS C14 C Y N 464 SOS C13 C Y N 465 SOS C12 C Y N 466 SOS C11 C Y N 467 SOS C10 C Y N 468 SOS C9 C N N 469 SOS N7 N N N 470 SOS C8 C N N 471 SOS O8 O N N 472 SOS C5 C N N 473 SOS C6 C N N 474 SOS O6 O N N 475 SOS N1 N N N 476 SOS C2 C N N 477 SOS N2 N N N 478 SOS N3 N N N 479 SOS C4 C N N 480 SOS N9 N N N 481 SOS "C1'" C N R 482 SOS "C6'" C N N 483 SOS "C2'" C N N 484 SOS "C3'" C N S 485 SOS "O3'" O N N 486 SOS "C4'" C N R 487 SOS "C5'" C N N 488 SOS "O5'" O N N 489 SOS P P N N 490 SOS OP2 O N N 491 SOS OP1 O N N 492 SOS H15 H N N 493 SOS H14 H N N 494 SOS H13 H N N 495 SOS H12 H N N 496 SOS H11 H N N 497 SOS H91 H N N 498 SOS H92 H N N 499 SOS H8 H N N 500 SOS HN1 H N N 501 SOS HN21 H N N 502 SOS HN22 H N N 503 SOS HN9 H N N 504 SOS "H1'" H N N 505 SOS "H6'1" H N N 506 SOS "H6'2" H N N 507 SOS "H2'" H N N 508 SOS "H2''" H N N 509 SOS "H3'" H N N 510 SOS "HO3'" H N N 511 SOS "H4'" H N N 512 SOS "H5'" H N N 513 SOS "H5''" H N N 514 SOS HOP2 H N N 515 SOS HOP3 H N N 516 THR N N N N 517 THR CA C N S 518 THR C C N N 519 THR O O N N 520 THR CB C N R 521 THR OG1 O N N 522 THR CG2 C N N 523 THR OXT O N N 524 THR H H N N 525 THR H2 H N N 526 THR HA H N N 527 THR HB H N N 528 THR HG1 H N N 529 THR HG21 H N N 530 THR HG22 H N N 531 THR HG23 H N N 532 THR HXT H N N 533 TRP N N N N 534 TRP CA C N S 535 TRP C C N N 536 TRP O O N N 537 TRP CB C N N 538 TRP CG C Y N 539 TRP CD1 C Y N 540 TRP CD2 C Y N 541 TRP NE1 N Y N 542 TRP CE2 C Y N 543 TRP CE3 C Y N 544 TRP CZ2 C Y N 545 TRP CZ3 C Y N 546 TRP CH2 C Y N 547 TRP OXT O N N 548 TRP H H N N 549 TRP H2 H N N 550 TRP HA H N N 551 TRP HB2 H N N 552 TRP HB3 H N N 553 TRP HD1 H N N 554 TRP HE1 H N N 555 TRP HE3 H N N 556 TRP HZ2 H N N 557 TRP HZ3 H N N 558 TRP HH2 H N N 559 TRP HXT H N N 560 TYR N N N N 561 TYR CA C N S 562 TYR C C N N 563 TYR O O N N 564 TYR CB C N N 565 TYR CG C Y N 566 TYR CD1 C Y N 567 TYR CD2 C Y N 568 TYR CE1 C Y N 569 TYR CE2 C Y N 570 TYR CZ C Y N 571 TYR OH O N N 572 TYR OXT O N N 573 TYR H H N N 574 TYR H2 H N N 575 TYR HA H N N 576 TYR HB2 H N N 577 TYR HB3 H N N 578 TYR HD1 H N N 579 TYR HD2 H N N 580 TYR HE1 H N N 581 TYR HE2 H N N 582 TYR HH H N N 583 TYR HXT H N N 584 VAL N N N N 585 VAL CA C N S 586 VAL C C N N 587 VAL O O N N 588 VAL CB C N N 589 VAL CG1 C N N 590 VAL CG2 C N N 591 VAL OXT O N N 592 VAL H H N N 593 VAL H2 H N N 594 VAL HA H N N 595 VAL HB H N N 596 VAL HG11 H N N 597 VAL HG12 H N N 598 VAL HG13 H N N 599 VAL HG21 H N N 600 VAL HG22 H N N 601 VAL HG23 H N N 602 VAL HXT H N N 603 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2ON C5 C6 sing N N 1 2ON N1 C6 sing N N 2 2ON C6 O6 doub N N 3 2ON C2 N1 sing N N 4 2ON N1 HN1 sing N N 5 2ON N3 C2 doub N N 6 2ON S2 C2 sing N N 7 2ON N3 C4 sing N N 8 2ON S2 HS2 sing N N 9 2ON N9 C4 sing Y N 10 2ON C4 C5 doub Y N 11 2ON N7 C5 sing Y N 12 2ON N9 C8 sing Y N 13 2ON C8 N7 doub Y N 14 2ON C8 HC8 sing N N 15 2ON N9 HN9 sing N N 16 ALA N CA sing N N 17 ALA N H sing N N 18 ALA N H2 sing N N 19 ALA CA C sing N N 20 ALA CA CB sing N N 21 ALA CA HA sing N N 22 ALA C O doub N N 23 ALA C OXT sing N N 24 ALA CB HB1 sing N N 25 ALA CB HB2 sing N N 26 ALA CB HB3 sing N N 27 ALA OXT HXT sing N N 28 ARG N CA sing N N 29 ARG N H sing N N 30 ARG N H2 sing N N 31 ARG CA C sing N N 32 ARG CA CB sing N N 33 ARG CA HA sing N N 34 ARG C O doub N N 35 ARG C OXT sing N N 36 ARG CB CG sing N N 37 ARG CB HB2 sing N N 38 ARG CB HB3 sing N N 39 ARG CG CD sing N N 40 ARG CG HG2 sing N N 41 ARG CG HG3 sing N N 42 ARG CD NE sing N N 43 ARG CD HD2 sing N N 44 ARG CD HD3 sing N N 45 ARG NE CZ sing N N 46 ARG NE HE sing N N 47 ARG CZ NH1 sing N N 48 ARG CZ NH2 doub N N 49 ARG NH1 HH11 sing N N 50 ARG NH1 HH12 sing N N 51 ARG NH2 HH21 sing N N 52 ARG NH2 HH22 sing N N 53 ARG OXT HXT sing N N 54 ASN N CA sing N N 55 ASN N H sing N N 56 ASN N H2 sing N N 57 ASN CA C sing N N 58 ASN CA CB sing N N 59 ASN CA HA sing N N 60 ASN C O doub N N 61 ASN C OXT sing N N 62 ASN CB CG sing N N 63 ASN CB HB2 sing N N 64 ASN CB HB3 sing N N 65 ASN CG OD1 doub N N 66 ASN CG ND2 sing N N 67 ASN ND2 HD21 sing N N 68 ASN ND2 HD22 sing N N 69 ASN OXT HXT sing N N 70 ASP N CA sing N N 71 ASP N H sing N N 72 ASP N H2 sing N N 73 ASP CA C sing N N 74 ASP CA CB sing N N 75 ASP CA HA sing N N 76 ASP C O doub N N 77 ASP C OXT sing N N 78 ASP CB CG sing N N 79 ASP CB HB2 sing N N 80 ASP CB HB3 sing N N 81 ASP CG OD1 doub N N 82 ASP CG OD2 sing N N 83 ASP OD2 HD2 sing N N 84 ASP OXT HXT sing N N 85 CYS N CA sing N N 86 CYS N H sing N N 87 CYS N H2 sing N N 88 CYS CA C sing N N 89 CYS CA CB sing N N 90 CYS CA HA sing N N 91 CYS C O doub N N 92 CYS C OXT sing N N 93 CYS CB SG sing N N 94 CYS CB HB2 sing N N 95 CYS CB HB3 sing N N 96 CYS SG HG sing N N 97 CYS OXT HXT sing N N 98 DA OP3 P sing N N 99 DA OP3 HOP3 sing N N 100 DA P OP1 doub N N 101 DA P OP2 sing N N 102 DA P "O5'" sing N N 103 DA OP2 HOP2 sing N N 104 DA "O5'" "C5'" sing N N 105 DA "C5'" "C4'" sing N N 106 DA "C5'" "H5'" sing N N 107 DA "C5'" "H5''" sing N N 108 DA "C4'" "O4'" sing N N 109 DA "C4'" "C3'" sing N N 110 DA "C4'" "H4'" sing N N 111 DA "O4'" "C1'" sing N N 112 DA "C3'" "O3'" sing N N 113 DA "C3'" "C2'" sing N N 114 DA "C3'" "H3'" sing N N 115 DA "O3'" "HO3'" sing N N 116 DA "C2'" "C1'" sing N N 117 DA "C2'" "H2'" sing N N 118 DA "C2'" "H2''" sing N N 119 DA "C1'" N9 sing N N 120 DA "C1'" "H1'" sing N N 121 DA N9 C8 sing Y N 122 DA N9 C4 sing Y N 123 DA C8 N7 doub Y N 124 DA C8 H8 sing N N 125 DA N7 C5 sing Y N 126 DA C5 C6 sing Y N 127 DA C5 C4 doub Y N 128 DA C6 N6 sing N N 129 DA C6 N1 doub Y N 130 DA N6 H61 sing N N 131 DA N6 H62 sing N N 132 DA N1 C2 sing Y N 133 DA C2 N3 doub Y N 134 DA C2 H2 sing N N 135 DA N3 C4 sing Y N 136 DC OP3 P sing N N 137 DC OP3 HOP3 sing N N 138 DC P OP1 doub N N 139 DC P OP2 sing N N 140 DC P "O5'" sing N N 141 DC OP2 HOP2 sing N N 142 DC "O5'" "C5'" sing N N 143 DC "C5'" "C4'" sing N N 144 DC "C5'" "H5'" sing N N 145 DC "C5'" "H5''" sing N N 146 DC "C4'" "O4'" sing N N 147 DC "C4'" "C3'" sing N N 148 DC "C4'" "H4'" sing N N 149 DC "O4'" "C1'" sing N N 150 DC "C3'" "O3'" sing N N 151 DC "C3'" "C2'" sing N N 152 DC "C3'" "H3'" sing N N 153 DC "O3'" "HO3'" sing N N 154 DC "C2'" "C1'" sing N N 155 DC "C2'" "H2'" sing N N 156 DC "C2'" "H2''" sing N N 157 DC "C1'" N1 sing N N 158 DC "C1'" "H1'" sing N N 159 DC N1 C2 sing N N 160 DC N1 C6 sing N N 161 DC C2 O2 doub N N 162 DC C2 N3 sing N N 163 DC N3 C4 doub N N 164 DC C4 N4 sing N N 165 DC C4 C5 sing N N 166 DC N4 H41 sing N N 167 DC N4 H42 sing N N 168 DC C5 C6 doub N N 169 DC C5 H5 sing N N 170 DC C6 H6 sing N N 171 DG OP3 P sing N N 172 DG OP3 HOP3 sing N N 173 DG P OP1 doub N N 174 DG P OP2 sing N N 175 DG P "O5'" sing N N 176 DG OP2 HOP2 sing N N 177 DG "O5'" "C5'" sing N N 178 DG "C5'" "C4'" sing N N 179 DG "C5'" "H5'" sing N N 180 DG "C5'" "H5''" sing N N 181 DG "C4'" "O4'" sing N N 182 DG "C4'" "C3'" sing N N 183 DG "C4'" "H4'" sing N N 184 DG "O4'" "C1'" sing N N 185 DG "C3'" "O3'" sing N N 186 DG "C3'" "C2'" sing N N 187 DG "C3'" "H3'" sing N N 188 DG "O3'" "HO3'" sing N N 189 DG "C2'" "C1'" sing N N 190 DG "C2'" "H2'" sing N N 191 DG "C2'" "H2''" sing N N 192 DG "C1'" N9 sing N N 193 DG "C1'" "H1'" sing N N 194 DG N9 C8 sing Y N 195 DG N9 C4 sing Y N 196 DG C8 N7 doub Y N 197 DG C8 H8 sing N N 198 DG N7 C5 sing Y N 199 DG C5 C6 sing N N 200 DG C5 C4 doub Y N 201 DG C6 O6 doub N N 202 DG C6 N1 sing N N 203 DG N1 C2 sing N N 204 DG N1 H1 sing N N 205 DG C2 N2 sing N N 206 DG C2 N3 doub N N 207 DG N2 H21 sing N N 208 DG N2 H22 sing N N 209 DG N3 C4 sing N N 210 DT OP3 P sing N N 211 DT OP3 HOP3 sing N N 212 DT P OP1 doub N N 213 DT P OP2 sing N N 214 DT P "O5'" sing N N 215 DT OP2 HOP2 sing N N 216 DT "O5'" "C5'" sing N N 217 DT "C5'" "C4'" sing N N 218 DT "C5'" "H5'" sing N N 219 DT "C5'" "H5''" sing N N 220 DT "C4'" "O4'" sing N N 221 DT "C4'" "C3'" sing N N 222 DT "C4'" "H4'" sing N N 223 DT "O4'" "C1'" sing N N 224 DT "C3'" "O3'" sing N N 225 DT "C3'" "C2'" sing N N 226 DT "C3'" "H3'" sing N N 227 DT "O3'" "HO3'" sing N N 228 DT "C2'" "C1'" sing N N 229 DT "C2'" "H2'" sing N N 230 DT "C2'" "H2''" sing N N 231 DT "C1'" N1 sing N N 232 DT "C1'" "H1'" sing N N 233 DT N1 C2 sing N N 234 DT N1 C6 sing N N 235 DT C2 O2 doub N N 236 DT C2 N3 sing N N 237 DT N3 C4 sing N N 238 DT N3 H3 sing N N 239 DT C4 O4 doub N N 240 DT C4 C5 sing N N 241 DT C5 C7 sing N N 242 DT C5 C6 doub N N 243 DT C7 H71 sing N N 244 DT C7 H72 sing N N 245 DT C7 H73 sing N N 246 DT C6 H6 sing N N 247 GLN N CA sing N N 248 GLN N H sing N N 249 GLN N H2 sing N N 250 GLN CA C sing N N 251 GLN CA CB sing N N 252 GLN CA HA sing N N 253 GLN C O doub N N 254 GLN C OXT sing N N 255 GLN CB CG sing N N 256 GLN CB HB2 sing N N 257 GLN CB HB3 sing N N 258 GLN CG CD sing N N 259 GLN CG HG2 sing N N 260 GLN CG HG3 sing N N 261 GLN CD OE1 doub N N 262 GLN CD NE2 sing N N 263 GLN NE2 HE21 sing N N 264 GLN NE2 HE22 sing N N 265 GLN OXT HXT sing N N 266 GLU N CA sing N N 267 GLU N H sing N N 268 GLU N H2 sing N N 269 GLU CA C sing N N 270 GLU CA CB sing N N 271 GLU CA HA sing N N 272 GLU C O doub N N 273 GLU C OXT sing N N 274 GLU CB CG sing N N 275 GLU CB HB2 sing N N 276 GLU CB HB3 sing N N 277 GLU CG CD sing N N 278 GLU CG HG2 sing N N 279 GLU CG HG3 sing N N 280 GLU CD OE1 doub N N 281 GLU CD OE2 sing N N 282 GLU OE2 HE2 sing N N 283 GLU OXT HXT sing N N 284 GLY N CA sing N N 285 GLY N H sing N N 286 GLY N H2 sing N N 287 GLY CA C sing N N 288 GLY CA HA2 sing N N 289 GLY CA HA3 sing N N 290 GLY C O doub N N 291 GLY C OXT sing N N 292 GLY OXT HXT sing N N 293 HIS N CA sing N N 294 HIS N H sing N N 295 HIS N H2 sing N N 296 HIS CA C sing N N 297 HIS CA CB sing N N 298 HIS CA HA sing N N 299 HIS C O doub N N 300 HIS C OXT sing N N 301 HIS CB CG sing N N 302 HIS CB HB2 sing N N 303 HIS CB HB3 sing N N 304 HIS CG ND1 sing Y N 305 HIS CG CD2 doub Y N 306 HIS ND1 CE1 doub Y N 307 HIS ND1 HD1 sing N N 308 HIS CD2 NE2 sing Y N 309 HIS CD2 HD2 sing N N 310 HIS CE1 NE2 sing Y N 311 HIS CE1 HE1 sing N N 312 HIS NE2 HE2 sing N N 313 HIS OXT HXT sing N N 314 HOH O H1 sing N N 315 HOH O H2 sing N N 316 ILE N CA sing N N 317 ILE N H sing N N 318 ILE N H2 sing N N 319 ILE CA C sing N N 320 ILE CA CB sing N N 321 ILE CA HA sing N N 322 ILE C O doub N N 323 ILE C OXT sing N N 324 ILE CB CG1 sing N N 325 ILE CB CG2 sing N N 326 ILE CB HB sing N N 327 ILE CG1 CD1 sing N N 328 ILE CG1 HG12 sing N N 329 ILE CG1 HG13 sing N N 330 ILE CG2 HG21 sing N N 331 ILE CG2 HG22 sing N N 332 ILE CG2 HG23 sing N N 333 ILE CD1 HD11 sing N N 334 ILE CD1 HD12 sing N N 335 ILE CD1 HD13 sing N N 336 ILE OXT HXT sing N N 337 LEU N CA sing N N 338 LEU N H sing N N 339 LEU N H2 sing N N 340 LEU CA C sing N N 341 LEU CA CB sing N N 342 LEU CA HA sing N N 343 LEU C O doub N N 344 LEU C OXT sing N N 345 LEU CB CG sing N N 346 LEU CB HB2 sing N N 347 LEU CB HB3 sing N N 348 LEU CG CD1 sing N N 349 LEU CG CD2 sing N N 350 LEU CG HG sing N N 351 LEU CD1 HD11 sing N N 352 LEU CD1 HD12 sing N N 353 LEU CD1 HD13 sing N N 354 LEU CD2 HD21 sing N N 355 LEU CD2 HD22 sing N N 356 LEU CD2 HD23 sing N N 357 LEU OXT HXT sing N N 358 LYS N CA sing N N 359 LYS N H sing N N 360 LYS N H2 sing N N 361 LYS CA C sing N N 362 LYS CA CB sing N N 363 LYS CA HA sing N N 364 LYS C O doub N N 365 LYS C OXT sing N N 366 LYS CB CG sing N N 367 LYS CB HB2 sing N N 368 LYS CB HB3 sing N N 369 LYS CG CD sing N N 370 LYS CG HG2 sing N N 371 LYS CG HG3 sing N N 372 LYS CD CE sing N N 373 LYS CD HD2 sing N N 374 LYS CD HD3 sing N N 375 LYS CE NZ sing N N 376 LYS CE HE2 sing N N 377 LYS CE HE3 sing N N 378 LYS NZ HZ1 sing N N 379 LYS NZ HZ2 sing N N 380 LYS NZ HZ3 sing N N 381 LYS OXT HXT sing N N 382 MET N CA sing N N 383 MET N H sing N N 384 MET N H2 sing N N 385 MET CA C sing N N 386 MET CA CB sing N N 387 MET CA HA sing N N 388 MET C O doub N N 389 MET C OXT sing N N 390 MET CB CG sing N N 391 MET CB HB2 sing N N 392 MET CB HB3 sing N N 393 MET CG SD sing N N 394 MET CG HG2 sing N N 395 MET CG HG3 sing N N 396 MET SD CE sing N N 397 MET CE HE1 sing N N 398 MET CE HE2 sing N N 399 MET CE HE3 sing N N 400 MET OXT HXT sing N N 401 PHE N CA sing N N 402 PHE N H sing N N 403 PHE N H2 sing N N 404 PHE CA C sing N N 405 PHE CA CB sing N N 406 PHE CA HA sing N N 407 PHE C O doub N N 408 PHE C OXT sing N N 409 PHE CB CG sing N N 410 PHE CB HB2 sing N N 411 PHE CB HB3 sing N N 412 PHE CG CD1 doub Y N 413 PHE CG CD2 sing Y N 414 PHE CD1 CE1 sing Y N 415 PHE CD1 HD1 sing N N 416 PHE CD2 CE2 doub Y N 417 PHE CD2 HD2 sing N N 418 PHE CE1 CZ doub Y N 419 PHE CE1 HE1 sing N N 420 PHE CE2 CZ sing Y N 421 PHE CE2 HE2 sing N N 422 PHE CZ HZ sing N N 423 PHE OXT HXT sing N N 424 PRO N CA sing N N 425 PRO N CD sing N N 426 PRO N H sing N N 427 PRO CA C sing N N 428 PRO CA CB sing N N 429 PRO CA HA sing N N 430 PRO C O doub N N 431 PRO C OXT sing N N 432 PRO CB CG sing N N 433 PRO CB HB2 sing N N 434 PRO CB HB3 sing N N 435 PRO CG CD sing N N 436 PRO CG HG2 sing N N 437 PRO CG HG3 sing N N 438 PRO CD HD2 sing N N 439 PRO CD HD3 sing N N 440 PRO OXT HXT sing N N 441 SER N CA sing N N 442 SER N H sing N N 443 SER N H2 sing N N 444 SER CA C sing N N 445 SER CA CB sing N N 446 SER CA HA sing N N 447 SER C O doub N N 448 SER C OXT sing N N 449 SER CB OG sing N N 450 SER CB HB2 sing N N 451 SER CB HB3 sing N N 452 SER OG HG sing N N 453 SER OXT HXT sing N N 454 SOS OP3 P sing N N 455 SOS OP3 HOP3 sing N N 456 SOS C15 C10 sing Y N 457 SOS C15 C14 doub Y N 458 SOS C15 H15 sing N N 459 SOS C14 C13 sing Y N 460 SOS C14 H14 sing N N 461 SOS C13 C12 doub Y N 462 SOS C13 H13 sing N N 463 SOS C12 C11 sing Y N 464 SOS C12 H12 sing N N 465 SOS C11 C10 doub Y N 466 SOS C11 H11 sing N N 467 SOS C10 C9 sing N N 468 SOS C9 N7 sing N N 469 SOS C9 H91 sing N N 470 SOS C9 H92 sing N N 471 SOS N7 C8 sing N N 472 SOS N7 C5 sing N N 473 SOS C8 O8 doub N N 474 SOS C8 H8 sing N N 475 SOS C5 C6 sing N N 476 SOS C5 C4 doub N N 477 SOS C6 O6 doub N N 478 SOS C6 N1 sing N N 479 SOS N1 C2 sing N N 480 SOS N1 HN1 sing N N 481 SOS C2 N3 doub N N 482 SOS C2 N2 sing N N 483 SOS N2 HN21 sing N N 484 SOS N2 HN22 sing N N 485 SOS N3 C4 sing N N 486 SOS C4 N9 sing N N 487 SOS N9 "C1'" sing N N 488 SOS N9 HN9 sing N N 489 SOS "C1'" "C2'" sing N N 490 SOS "C1'" "C6'" sing N N 491 SOS "C1'" "H1'" sing N N 492 SOS "C6'" "C4'" sing N N 493 SOS "C6'" "H6'1" sing N N 494 SOS "C6'" "H6'2" sing N N 495 SOS "C2'" "C3'" sing N N 496 SOS "C2'" "H2'" sing N N 497 SOS "C2'" "H2''" sing N N 498 SOS "C3'" "C4'" sing N N 499 SOS "C3'" "O3'" sing N N 500 SOS "C3'" "H3'" sing N N 501 SOS "O3'" "HO3'" sing N N 502 SOS "C4'" "C5'" sing N N 503 SOS "C4'" "H4'" sing N N 504 SOS "C5'" "O5'" sing N N 505 SOS "C5'" "H5'" sing N N 506 SOS "C5'" "H5''" sing N N 507 SOS "O5'" P sing N N 508 SOS P OP1 doub N N 509 SOS P OP2 sing N N 510 SOS OP2 HOP2 sing N N 511 THR N CA sing N N 512 THR N H sing N N 513 THR N H2 sing N N 514 THR CA C sing N N 515 THR CA CB sing N N 516 THR CA HA sing N N 517 THR C O doub N N 518 THR C OXT sing N N 519 THR CB OG1 sing N N 520 THR CB CG2 sing N N 521 THR CB HB sing N N 522 THR OG1 HG1 sing N N 523 THR CG2 HG21 sing N N 524 THR CG2 HG22 sing N N 525 THR CG2 HG23 sing N N 526 THR OXT HXT sing N N 527 TRP N CA sing N N 528 TRP N H sing N N 529 TRP N H2 sing N N 530 TRP CA C sing N N 531 TRP CA CB sing N N 532 TRP CA HA sing N N 533 TRP C O doub N N 534 TRP C OXT sing N N 535 TRP CB CG sing N N 536 TRP CB HB2 sing N N 537 TRP CB HB3 sing N N 538 TRP CG CD1 doub Y N 539 TRP CG CD2 sing Y N 540 TRP CD1 NE1 sing Y N 541 TRP CD1 HD1 sing N N 542 TRP CD2 CE2 doub Y N 543 TRP CD2 CE3 sing Y N 544 TRP NE1 CE2 sing Y N 545 TRP NE1 HE1 sing N N 546 TRP CE2 CZ2 sing Y N 547 TRP CE3 CZ3 doub Y N 548 TRP CE3 HE3 sing N N 549 TRP CZ2 CH2 doub Y N 550 TRP CZ2 HZ2 sing N N 551 TRP CZ3 CH2 sing Y N 552 TRP CZ3 HZ3 sing N N 553 TRP CH2 HH2 sing N N 554 TRP OXT HXT sing N N 555 TYR N CA sing N N 556 TYR N H sing N N 557 TYR N H2 sing N N 558 TYR CA C sing N N 559 TYR CA CB sing N N 560 TYR CA HA sing N N 561 TYR C O doub N N 562 TYR C OXT sing N N 563 TYR CB CG sing N N 564 TYR CB HB2 sing N N 565 TYR CB HB3 sing N N 566 TYR CG CD1 doub Y N 567 TYR CG CD2 sing Y N 568 TYR CD1 CE1 sing Y N 569 TYR CD1 HD1 sing N N 570 TYR CD2 CE2 doub Y N 571 TYR CD2 HD2 sing N N 572 TYR CE1 CZ doub Y N 573 TYR CE1 HE1 sing N N 574 TYR CE2 CZ sing Y N 575 TYR CE2 HE2 sing N N 576 TYR CZ OH sing N N 577 TYR OH HH sing N N 578 TYR OXT HXT sing N N 579 VAL N CA sing N N 580 VAL N H sing N N 581 VAL N H2 sing N N 582 VAL CA C sing N N 583 VAL CA CB sing N N 584 VAL CA HA sing N N 585 VAL C O doub N N 586 VAL C OXT sing N N 587 VAL CB CG1 sing N N 588 VAL CB CG2 sing N N 589 VAL CB HB sing N N 590 VAL CG1 HG11 sing N N 591 VAL CG1 HG12 sing N N 592 VAL CG1 HG13 sing N N 593 VAL CG2 HG21 sing N N 594 VAL CG2 HG22 sing N N 595 VAL CG2 HG23 sing N N 596 VAL OXT HXT sing N N 597 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4PDI 'double helix' 4PDI 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 C DA 14 1_555 -0.193 -0.157 -0.012 0.280 -6.749 5.074 1 B_DT2:DA28_C B 2 ? C 28 ? 20 1 1 B DC 3 1_555 C DG 13 1_555 -0.017 -0.432 0.144 -0.686 -7.084 1.944 2 B_DC3:DG27_C B 3 ? C 27 ? 19 1 1 B DT 4 1_555 C DA 12 1_555 -0.416 -0.306 0.178 -5.166 -9.940 0.884 3 B_DT4:DA26_C B 4 ? C 26 ? 20 1 1 B DT 5 1_555 C DA 11 1_555 -0.019 -0.123 -0.019 2.425 -7.675 6.115 4 B_DT5:DA25_C B 5 ? C 25 ? 20 1 1 B DT 6 1_555 C DA 10 1_555 -0.130 -0.128 -0.424 18.076 -3.699 4.481 5 B_DT6:DA24_C B 6 ? C 24 ? 20 1 1 B DT 8 1_555 C DA 8 1_555 -0.326 -0.173 -0.017 -6.463 0.564 1.324 6 B_DT8:DA22_C B 8 ? C 22 ? 20 1 1 B DT 9 1_555 C DA 7 1_555 -0.217 -0.187 -0.119 4.835 -15.930 3.053 7 B_DT9:DA21_C B 9 ? C 21 ? 20 1 1 B DT 10 1_555 C DA 6 1_555 -0.173 -0.189 -0.088 2.628 -12.712 2.172 8 B_DT10:DA20_C B 10 ? C 20 ? 20 1 1 B DC 11 1_555 C DG 5 1_555 -0.193 -0.197 0.155 -2.803 -11.003 0.401 9 B_DC11:DG19_C B 11 ? C 19 ? 19 1 1 B DT 12 1_555 C DA 4 1_555 -0.184 -0.127 0.146 -1.960 -9.307 0.204 10 B_DT12:DA18_C B 12 ? C 18 ? 20 1 1 B DC 13 1_555 C DG 3 1_555 0.190 -0.208 0.129 -2.286 -7.887 -0.199 11 B_DC13:DG17_C B 13 ? C 17 ? 19 1 1 B DG 14 1_555 C DC 2 1_555 0.103 -0.243 0.350 12.313 -6.906 0.763 12 B_DG14:DC16_C B 14 ? C 16 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 C DA 14 1_555 B DC 3 1_555 C DG 13 1_555 0.194 -0.336 3.354 -0.964 1.656 36.343 -0.774 -0.448 3.330 2.652 1.545 36.392 1 BB_DT2DC3:DG27DA28_CC B 2 ? C 28 ? B 3 ? C 27 ? 1 B DC 3 1_555 C DG 13 1_555 B DT 4 1_555 C DA 12 1_555 0.017 -0.697 3.426 1.899 2.942 31.570 -1.833 0.331 3.344 5.387 -3.476 31.759 2 BB_DC3DT4:DA26DG27_CC B 3 ? C 27 ? B 4 ? C 26 ? 1 B DT 4 1_555 C DA 12 1_555 B DT 5 1_555 C DA 11 1_555 0.553 -0.251 3.085 1.304 0.297 35.867 -0.447 -0.720 3.101 0.481 -2.116 35.891 3 BB_DT4DT5:DA25DA26_CC B 4 ? C 26 ? B 5 ? C 25 ? 1 B DT 5 1_555 C DA 11 1_555 B DT 6 1_555 C DA 10 1_555 -0.032 0.098 2.967 3.431 5.647 27.717 -0.977 0.778 2.905 11.581 -7.037 28.479 4 BB_DT5DT6:DA24DA25_CC B 5 ? C 25 ? B 6 ? C 24 ? 1 B DT 8 1_555 C DA 8 1_555 B DT 9 1_555 C DA 7 1_555 0.110 0.036 3.078 -0.402 5.772 29.192 -1.069 -0.294 3.027 11.311 0.787 29.748 5 BB_DT8DT9:DA21DA22_CC B 8 ? C 22 ? B 9 ? C 21 ? 1 B DT 9 1_555 C DA 7 1_555 B DT 10 1_555 C DA 6 1_555 0.302 -0.194 3.371 0.952 -1.475 36.577 -0.100 -0.346 3.382 -2.348 -1.516 36.617 6 BB_DT9DT10:DA20DA21_CC B 9 ? C 21 ? B 10 ? C 20 ? 1 B DT 10 1_555 C DA 6 1_555 B DC 11 1_555 C DG 5 1_555 -0.295 -0.504 3.473 -3.399 0.424 33.487 -0.944 -0.081 3.478 0.733 5.880 33.657 7 BB_DT10DC11:DG19DA20_CC B 10 ? C 20 ? B 11 ? C 19 ? 1 B DC 11 1_555 C DG 5 1_555 B DT 12 1_555 C DA 4 1_555 -0.627 -0.376 3.320 0.461 2.278 32.474 -1.072 1.200 3.278 4.067 -0.822 32.555 8 BB_DC11DT12:DA18DG19_CC B 11 ? C 19 ? B 12 ? C 18 ? 1 B DT 12 1_555 C DA 4 1_555 B DC 13 1_555 C DG 3 1_555 0.338 -0.091 3.311 1.191 0.212 36.235 -0.177 -0.373 3.319 0.341 -1.914 36.254 9 BB_DT12DC13:DG17DA18_CC B 12 ? C 18 ? B 13 ? C 17 ? 1 B DC 13 1_555 C DG 3 1_555 B DG 14 1_555 C DC 2 1_555 0.200 0.379 3.085 -2.928 9.450 31.673 -0.860 -0.824 3.039 16.809 5.207 33.145 10 BB_DC13DG14:DC16DG17_CC B 13 ? C 17 ? B 14 ? C 16 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3C58 _pdbx_initial_refinement_model.details 'PDB entry 3C58' # _atom_sites.entry_id 4PDI _atom_sites.fract_transf_matrix[1][1] 0.010925 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010925 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007094 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_