data_4PS6 # _entry.id 4PS6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4PS6 pdb_00004ps6 10.2210/pdb4ps6/pdb RCSB RCSB085153 ? ? WWPDB D_1000085153 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-420291 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4PS6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-03-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of an inhibitor of vertebrate lysozyme (PA3902) from Pseudomonas aeruginosa PAO1 at 1.25 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4PS6 _cell.length_a 33.449 _cell.length_b 47.057 _cell.length_c 36.389 _cell.angle_alpha 90.000 _cell.angle_beta 96.910 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4PS6 _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Inhibitor of vertebrate lysozyme' 14675.914 1 ? ? ? ? 2 water nat water 18.015 300 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEEQPRLFELLGQPGYKATWHA(MSE)FKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRG DKSAAYGLQVSLPDEPAEV(MSE)QTPSKYATYRWYGEPSRQVRELL(MSE)KQLESDPNWK ; _entity_poly.pdbx_seq_one_letter_code_can ;GEEQPRLFELLGQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSA AYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQLESDPNWK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-420291 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 GLU n 1 4 GLN n 1 5 PRO n 1 6 ARG n 1 7 LEU n 1 8 PHE n 1 9 GLU n 1 10 LEU n 1 11 LEU n 1 12 GLY n 1 13 GLN n 1 14 PRO n 1 15 GLY n 1 16 TYR n 1 17 LYS n 1 18 ALA n 1 19 THR n 1 20 TRP n 1 21 HIS n 1 22 ALA n 1 23 MSE n 1 24 PHE n 1 25 LYS n 1 26 GLY n 1 27 GLU n 1 28 SER n 1 29 ASP n 1 30 VAL n 1 31 PRO n 1 32 LYS n 1 33 TRP n 1 34 VAL n 1 35 SER n 1 36 ASP n 1 37 ALA n 1 38 SER n 1 39 GLY n 1 40 PRO n 1 41 SER n 1 42 SER n 1 43 PRO n 1 44 SER n 1 45 THR n 1 46 SER n 1 47 LEU n 1 48 SER n 1 49 LEU n 1 50 GLU n 1 51 GLY n 1 52 GLN n 1 53 PRO n 1 54 TYR n 1 55 VAL n 1 56 LEU n 1 57 ALA n 1 58 ASN n 1 59 SER n 1 60 CYS n 1 61 LYS n 1 62 PRO n 1 63 HIS n 1 64 ASP n 1 65 CYS n 1 66 GLY n 1 67 ASN n 1 68 ASN n 1 69 ARG n 1 70 LEU n 1 71 LEU n 1 72 VAL n 1 73 ALA n 1 74 PHE n 1 75 ARG n 1 76 GLY n 1 77 ASP n 1 78 LYS n 1 79 SER n 1 80 ALA n 1 81 ALA n 1 82 TYR n 1 83 GLY n 1 84 LEU n 1 85 GLN n 1 86 VAL n 1 87 SER n 1 88 LEU n 1 89 PRO n 1 90 ASP n 1 91 GLU n 1 92 PRO n 1 93 ALA n 1 94 GLU n 1 95 VAL n 1 96 MSE n 1 97 GLN n 1 98 THR n 1 99 PRO n 1 100 SER n 1 101 LYS n 1 102 TYR n 1 103 ALA n 1 104 THR n 1 105 TYR n 1 106 ARG n 1 107 TRP n 1 108 TYR n 1 109 GLY n 1 110 GLU n 1 111 PRO n 1 112 SER n 1 113 ARG n 1 114 GLN n 1 115 VAL n 1 116 ARG n 1 117 GLU n 1 118 LEU n 1 119 LEU n 1 120 MSE n 1 121 LYS n 1 122 GLN n 1 123 LEU n 1 124 GLU n 1 125 SER n 1 126 ASP n 1 127 PRO n 1 128 ASN n 1 129 TRP n 1 130 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ivy, PA3902' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PAO1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208964 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IVY_PSEAE _struct_ref.pdbx_db_accession Q9HXB1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EEQPRLFELLGQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSAA YGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQLESDPNWK ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4PS6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HXB1 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 153 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 153 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4PS6 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9HXB1 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4PS6 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;0.2M ammonium acetate, 30.0% polyethylene glycol 4000, 0.1M sodium acetate pH 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-11-26 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97959 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.97959 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4PS6 _reflns.d_resolution_high 1.25 _reflns.d_resolution_low 36.126 _reflns.number_obs 26432 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_netI_over_sigmaI 15.570 _reflns.percent_possible_obs 84.900 _reflns.B_iso_Wilson_estimate 9.938 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.250 1.290 1964 ? 650 0.613 1.7 ? ? ? ? ? 23.400 1 1 1.290 1.350 10592 ? 2303 0.582 2.3 ? ? ? ? ? 63.800 2 1 1.350 1.410 16459 ? 2747 0.477 3.3 ? ? ? ? ? 91.700 3 1 1.410 1.480 19158 ? 2720 0.384 4.7 ? ? ? ? ? 94.000 4 1 1.480 1.570 19436 ? 2815 0.277 6.2 ? ? ? ? ? 92.700 5 1 1.570 1.700 21574 ? 3105 0.193 8.9 ? ? ? ? ? 93.400 6 1 1.700 1.870 20368 ? 2963 0.121 13.9 ? ? ? ? ? 96.200 7 1 1.870 2.140 20191 ? 2994 0.073 22.6 ? ? ? ? ? 96.600 8 1 2.140 2.690 20590 ? 3010 0.054 30.8 ? ? ? ? ? 97.500 9 1 2.690 ? 20168 ? 3122 0.035 43.9 ? ? ? ? ? 97.400 10 1 # _refine.entry_id 4PS6 _refine.ls_d_res_high 1.2500 _refine.ls_d_res_low 36.126 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 85.8400 _refine.ls_number_reflns_obs 26429 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.EXPERIMENTAL PHASES IN THE FORM OF HL COEFFICIENTS WERE USED AS RESTRAINTS DURING CRYSTALLOGRAPHIC REFINEMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1185 _refine.ls_R_factor_R_work 0.1161 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1639 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1326 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 14.0087 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.4900 _refine.aniso_B[2][2] 0.2100 _refine.aniso_B[3][3] 0.2600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.1000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9840 _refine.correlation_coeff_Fo_to_Fc_free 0.9700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0500 _refine.pdbx_overall_ESU_R_Free 0.0510 _refine.overall_SU_ML 0.0310 _refine.overall_SU_B 1.6050 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 61.880 _refine.B_iso_min 4.750 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1023 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 300 _refine_hist.number_atoms_total 1323 _refine_hist.d_res_high 1.2500 _refine_hist.d_res_low 36.126 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1079 0.008 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 985 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1474 1.317 1.984 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2295 0.759 3.002 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 138 5.517 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 49 29.233 24.490 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 167 10.705 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 9.421 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 149 0.088 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1241 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 241 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 529 1.270 1.181 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 528 1.270 1.181 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 662 1.611 2.680 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2064 1.464 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 27 30.030 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2310 8.731 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.2540 _refine_ls_shell.d_res_low 1.2870 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 25.5800 _refine_ls_shell.number_reflns_R_work 551 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2300 _refine_ls_shell.R_factor_R_free 0.2690 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 578 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4PS6 _struct.title 'Crystal structure of an inhibitor of vertebrate lysozyme (PA3902) from Pseudomonas aeruginosa PAO1 at 1.25 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF08816 family, Ivy, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TOXIN ; _struct_keywords.pdbx_keywords TOXIN _struct_keywords.entry_id 4PS6 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 6 ? LEU A 11 ? ARG A 29 LEU A 34 1 ? 6 HELX_P HELX_P2 2 GLN A 13 ? PHE A 24 ? GLN A 36 PHE A 47 1 ? 12 HELX_P HELX_P3 3 PRO A 31 ? ALA A 37 ? PRO A 54 ALA A 60 1 ? 7 HELX_P HELX_P4 4 PRO A 92 ? GLN A 97 ? PRO A 115 GLN A 120 5 ? 6 HELX_P HELX_P5 5 THR A 98 ? TYR A 102 ? THR A 121 TYR A 125 5 ? 5 HELX_P HELX_P6 6 SER A 112 ? SER A 125 ? SER A 135 SER A 148 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 60 SG ? ? ? 1_555 A CYS 65 SG ? ? A CYS 83 A CYS 88 1_555 ? ? ? ? ? ? ? 2.048 ? ? covale1 covale both ? A ALA 22 C ? ? ? 1_555 A MSE 23 N ? ? A ALA 45 A MSE 46 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 23 C ? ? ? 1_555 A PHE 24 N ? ? A MSE 46 A PHE 47 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A VAL 95 C ? ? ? 1_555 A MSE 96 N ? ? A VAL 118 A MSE 119 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 96 C ? ? ? 1_555 A GLN 97 N ? ? A MSE 119 A GLN 120 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A LEU 119 C ? ? ? 1_555 A MSE 120 N ? ? A LEU 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A MSE 120 C ? ? ? 1_555 A LYS 121 N ? ? A MSE 143 A LYS 144 1_555 ? ? ? ? ? ? ? 1.327 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 91 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 114 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 92 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 115 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.74 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 2 ? GLN A 4 ? GLU A 25 GLN A 27 A 2 SER A 44 ? LEU A 49 ? SER A 67 LEU A 72 A 3 GLN A 52 ? CYS A 60 ? GLN A 75 CYS A 83 A 4 ASN A 68 ? ARG A 75 ? ASN A 91 ARG A 98 A 5 ALA A 81 ? SER A 87 ? ALA A 104 SER A 110 A 6 THR A 104 ? TYR A 108 ? THR A 127 TYR A 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 2 ? N GLU A 25 O SER A 46 ? O SER A 69 A 2 3 N THR A 45 ? N THR A 68 O LEU A 56 ? O LEU A 79 A 3 4 N SER A 59 ? N SER A 82 O LEU A 70 ? O LEU A 93 A 4 5 N ARG A 69 ? N ARG A 92 O VAL A 86 ? O VAL A 109 A 5 6 N GLN A 85 ? N GLN A 108 O ARG A 106 ? O ARG A 129 # _atom_sites.entry_id 4PS6 _atom_sites.fract_transf_matrix[1][1] 0.029896 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003621 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021251 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027681 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 GLU 2 25 25 GLU GLU A . n A 1 3 GLU 3 26 26 GLU GLU A . n A 1 4 GLN 4 27 27 GLN GLN A . n A 1 5 PRO 5 28 28 PRO PRO A . n A 1 6 ARG 6 29 29 ARG ARG A . n A 1 7 LEU 7 30 30 LEU LEU A . n A 1 8 PHE 8 31 31 PHE PHE A . n A 1 9 GLU 9 32 32 GLU GLU A . n A 1 10 LEU 10 33 33 LEU LEU A . n A 1 11 LEU 11 34 34 LEU LEU A . n A 1 12 GLY 12 35 35 GLY GLY A . n A 1 13 GLN 13 36 36 GLN GLN A . n A 1 14 PRO 14 37 37 PRO PRO A . n A 1 15 GLY 15 38 38 GLY GLY A . n A 1 16 TYR 16 39 39 TYR TYR A . n A 1 17 LYS 17 40 40 LYS LYS A . n A 1 18 ALA 18 41 41 ALA ALA A . n A 1 19 THR 19 42 42 THR THR A . n A 1 20 TRP 20 43 43 TRP TRP A . n A 1 21 HIS 21 44 44 HIS HIS A . n A 1 22 ALA 22 45 45 ALA ALA A . n A 1 23 MSE 23 46 46 MSE MSE A . n A 1 24 PHE 24 47 47 PHE PHE A . n A 1 25 LYS 25 48 48 LYS LYS A . n A 1 26 GLY 26 49 49 GLY GLY A . n A 1 27 GLU 27 50 50 GLU GLU A . n A 1 28 SER 28 51 51 SER SER A . n A 1 29 ASP 29 52 52 ASP ASP A . n A 1 30 VAL 30 53 53 VAL VAL A . n A 1 31 PRO 31 54 54 PRO PRO A . n A 1 32 LYS 32 55 55 LYS LYS A . n A 1 33 TRP 33 56 56 TRP TRP A . n A 1 34 VAL 34 57 57 VAL VAL A . n A 1 35 SER 35 58 58 SER SER A . n A 1 36 ASP 36 59 59 ASP ASP A . n A 1 37 ALA 37 60 60 ALA ALA A . n A 1 38 SER 38 61 61 SER SER A . n A 1 39 GLY 39 62 62 GLY GLY A . n A 1 40 PRO 40 63 63 PRO PRO A . n A 1 41 SER 41 64 64 SER SER A . n A 1 42 SER 42 65 65 SER SER A . n A 1 43 PRO 43 66 66 PRO PRO A . n A 1 44 SER 44 67 67 SER SER A . n A 1 45 THR 45 68 68 THR THR A . n A 1 46 SER 46 69 69 SER SER A . n A 1 47 LEU 47 70 70 LEU LEU A . n A 1 48 SER 48 71 71 SER SER A . n A 1 49 LEU 49 72 72 LEU LEU A . n A 1 50 GLU 50 73 73 GLU GLU A . n A 1 51 GLY 51 74 74 GLY GLY A . n A 1 52 GLN 52 75 75 GLN GLN A . n A 1 53 PRO 53 76 76 PRO PRO A . n A 1 54 TYR 54 77 77 TYR TYR A . n A 1 55 VAL 55 78 78 VAL VAL A . n A 1 56 LEU 56 79 79 LEU LEU A . n A 1 57 ALA 57 80 80 ALA ALA A . n A 1 58 ASN 58 81 81 ASN ASN A . n A 1 59 SER 59 82 82 SER SER A . n A 1 60 CYS 60 83 83 CYS CYS A . n A 1 61 LYS 61 84 84 LYS LYS A . n A 1 62 PRO 62 85 85 PRO PRO A . n A 1 63 HIS 63 86 86 HIS HIS A . n A 1 64 ASP 64 87 87 ASP ASP A . n A 1 65 CYS 65 88 88 CYS CYS A . n A 1 66 GLY 66 89 89 GLY GLY A . n A 1 67 ASN 67 90 90 ASN ASN A . n A 1 68 ASN 68 91 91 ASN ASN A . n A 1 69 ARG 69 92 92 ARG ARG A . n A 1 70 LEU 70 93 93 LEU LEU A . n A 1 71 LEU 71 94 94 LEU LEU A . n A 1 72 VAL 72 95 95 VAL VAL A . n A 1 73 ALA 73 96 96 ALA ALA A . n A 1 74 PHE 74 97 97 PHE PHE A . n A 1 75 ARG 75 98 98 ARG ARG A . n A 1 76 GLY 76 99 99 GLY GLY A . n A 1 77 ASP 77 100 100 ASP ASP A . n A 1 78 LYS 78 101 101 LYS LYS A . n A 1 79 SER 79 102 102 SER SER A . n A 1 80 ALA 80 103 103 ALA ALA A . n A 1 81 ALA 81 104 104 ALA ALA A . n A 1 82 TYR 82 105 105 TYR TYR A . n A 1 83 GLY 83 106 106 GLY GLY A . n A 1 84 LEU 84 107 107 LEU LEU A . n A 1 85 GLN 85 108 108 GLN GLN A . n A 1 86 VAL 86 109 109 VAL VAL A . n A 1 87 SER 87 110 110 SER SER A . n A 1 88 LEU 88 111 111 LEU LEU A . n A 1 89 PRO 89 112 112 PRO PRO A . n A 1 90 ASP 90 113 113 ASP ASP A . n A 1 91 GLU 91 114 114 GLU GLU A . n A 1 92 PRO 92 115 115 PRO PRO A . n A 1 93 ALA 93 116 116 ALA ALA A . n A 1 94 GLU 94 117 117 GLU GLU A . n A 1 95 VAL 95 118 118 VAL VAL A . n A 1 96 MSE 96 119 119 MSE MSE A . n A 1 97 GLN 97 120 120 GLN GLN A . n A 1 98 THR 98 121 121 THR THR A . n A 1 99 PRO 99 122 122 PRO PRO A . n A 1 100 SER 100 123 123 SER SER A . n A 1 101 LYS 101 124 124 LYS LYS A . n A 1 102 TYR 102 125 125 TYR TYR A . n A 1 103 ALA 103 126 126 ALA ALA A . n A 1 104 THR 104 127 127 THR THR A . n A 1 105 TYR 105 128 128 TYR TYR A . n A 1 106 ARG 106 129 129 ARG ARG A . n A 1 107 TRP 107 130 130 TRP TRP A . n A 1 108 TYR 108 131 131 TYR TYR A . n A 1 109 GLY 109 132 132 GLY GLY A . n A 1 110 GLU 110 133 133 GLU GLU A . n A 1 111 PRO 111 134 134 PRO PRO A . n A 1 112 SER 112 135 135 SER SER A . n A 1 113 ARG 113 136 136 ARG ARG A . n A 1 114 GLN 114 137 137 GLN GLN A . n A 1 115 VAL 115 138 138 VAL VAL A . n A 1 116 ARG 116 139 139 ARG ARG A . n A 1 117 GLU 117 140 140 GLU GLU A . n A 1 118 LEU 118 141 141 LEU LEU A . n A 1 119 LEU 119 142 142 LEU LEU A . n A 1 120 MSE 120 143 143 MSE MSE A . n A 1 121 LYS 121 144 144 LYS LYS A . n A 1 122 GLN 122 145 145 GLN GLN A . n A 1 123 LEU 123 146 146 LEU LEU A . n A 1 124 GLU 124 147 147 GLU GLU A . n A 1 125 SER 125 148 148 SER SER A . n A 1 126 ASP 126 149 149 ASP ASP A . n A 1 127 PRO 127 150 150 PRO PRO A . n A 1 128 ASN 128 151 151 ASN ASN A . n A 1 129 TRP 129 152 152 TRP TRP A . n A 1 130 LYS 130 153 153 LYS LYS A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 154 HOH HOH A . B 2 HOH 2 202 155 HOH HOH A . B 2 HOH 3 203 156 HOH HOH A . B 2 HOH 4 204 157 HOH HOH A . B 2 HOH 5 205 158 HOH HOH A . B 2 HOH 6 206 159 HOH HOH A . B 2 HOH 7 207 160 HOH HOH A . B 2 HOH 8 208 161 HOH HOH A . B 2 HOH 9 209 162 HOH HOH A . B 2 HOH 10 210 163 HOH HOH A . B 2 HOH 11 211 164 HOH HOH A . B 2 HOH 12 212 165 HOH HOH A . B 2 HOH 13 213 166 HOH HOH A . B 2 HOH 14 214 167 HOH HOH A . B 2 HOH 15 215 168 HOH HOH A . B 2 HOH 16 216 169 HOH HOH A . B 2 HOH 17 217 170 HOH HOH A . B 2 HOH 18 218 171 HOH HOH A . B 2 HOH 19 219 172 HOH HOH A . B 2 HOH 20 220 173 HOH HOH A . B 2 HOH 21 221 174 HOH HOH A . B 2 HOH 22 222 175 HOH HOH A . B 2 HOH 23 223 176 HOH HOH A . B 2 HOH 24 224 177 HOH HOH A . B 2 HOH 25 225 178 HOH HOH A . B 2 HOH 26 226 179 HOH HOH A . B 2 HOH 27 227 180 HOH HOH A . B 2 HOH 28 228 181 HOH HOH A . B 2 HOH 29 229 182 HOH HOH A . B 2 HOH 30 230 183 HOH HOH A . B 2 HOH 31 231 184 HOH HOH A . B 2 HOH 32 232 185 HOH HOH A . B 2 HOH 33 233 186 HOH HOH A . B 2 HOH 34 234 187 HOH HOH A . B 2 HOH 35 235 188 HOH HOH A . B 2 HOH 36 236 189 HOH HOH A . B 2 HOH 37 237 190 HOH HOH A . B 2 HOH 38 238 191 HOH HOH A . B 2 HOH 39 239 192 HOH HOH A . B 2 HOH 40 240 193 HOH HOH A . B 2 HOH 41 241 194 HOH HOH A . B 2 HOH 42 242 195 HOH HOH A . B 2 HOH 43 243 196 HOH HOH A . B 2 HOH 44 244 197 HOH HOH A . B 2 HOH 45 245 198 HOH HOH A . B 2 HOH 46 246 199 HOH HOH A . B 2 HOH 47 247 200 HOH HOH A . B 2 HOH 48 248 201 HOH HOH A . B 2 HOH 49 249 202 HOH HOH A . B 2 HOH 50 250 203 HOH HOH A . B 2 HOH 51 251 204 HOH HOH A . B 2 HOH 52 252 205 HOH HOH A . B 2 HOH 53 253 206 HOH HOH A . B 2 HOH 54 254 207 HOH HOH A . B 2 HOH 55 255 208 HOH HOH A . B 2 HOH 56 256 209 HOH HOH A . B 2 HOH 57 257 210 HOH HOH A . B 2 HOH 58 258 211 HOH HOH A . B 2 HOH 59 259 212 HOH HOH A . B 2 HOH 60 260 213 HOH HOH A . B 2 HOH 61 261 214 HOH HOH A . B 2 HOH 62 262 215 HOH HOH A . B 2 HOH 63 263 216 HOH HOH A . B 2 HOH 64 264 217 HOH HOH A . B 2 HOH 65 265 218 HOH HOH A . B 2 HOH 66 266 219 HOH HOH A . B 2 HOH 67 267 220 HOH HOH A . B 2 HOH 68 268 221 HOH HOH A . B 2 HOH 69 269 222 HOH HOH A . B 2 HOH 70 270 223 HOH HOH A . B 2 HOH 71 271 224 HOH HOH A . B 2 HOH 72 272 225 HOH HOH A . B 2 HOH 73 273 226 HOH HOH A . B 2 HOH 74 274 227 HOH HOH A . B 2 HOH 75 275 228 HOH HOH A . B 2 HOH 76 276 229 HOH HOH A . B 2 HOH 77 277 230 HOH HOH A . B 2 HOH 78 278 231 HOH HOH A . B 2 HOH 79 279 232 HOH HOH A . B 2 HOH 80 280 233 HOH HOH A . B 2 HOH 81 281 234 HOH HOH A . B 2 HOH 82 282 235 HOH HOH A . B 2 HOH 83 283 236 HOH HOH A . B 2 HOH 84 284 237 HOH HOH A . B 2 HOH 85 285 238 HOH HOH A . B 2 HOH 86 286 239 HOH HOH A . B 2 HOH 87 287 240 HOH HOH A . B 2 HOH 88 288 241 HOH HOH A . B 2 HOH 89 289 242 HOH HOH A . B 2 HOH 90 290 243 HOH HOH A . B 2 HOH 91 291 244 HOH HOH A . B 2 HOH 92 292 245 HOH HOH A . B 2 HOH 93 293 246 HOH HOH A . B 2 HOH 94 294 247 HOH HOH A . B 2 HOH 95 295 248 HOH HOH A . B 2 HOH 96 296 249 HOH HOH A . B 2 HOH 97 297 250 HOH HOH A . B 2 HOH 98 298 251 HOH HOH A . B 2 HOH 99 299 252 HOH HOH A . B 2 HOH 100 300 253 HOH HOH A . B 2 HOH 101 301 254 HOH HOH A . B 2 HOH 102 302 255 HOH HOH A . B 2 HOH 103 303 256 HOH HOH A . B 2 HOH 104 304 257 HOH HOH A . B 2 HOH 105 305 258 HOH HOH A . B 2 HOH 106 306 259 HOH HOH A . B 2 HOH 107 307 260 HOH HOH A . B 2 HOH 108 308 261 HOH HOH A . B 2 HOH 109 309 262 HOH HOH A . B 2 HOH 110 310 263 HOH HOH A . B 2 HOH 111 311 264 HOH HOH A . B 2 HOH 112 312 265 HOH HOH A . B 2 HOH 113 313 266 HOH HOH A . B 2 HOH 114 314 267 HOH HOH A . B 2 HOH 115 315 268 HOH HOH A . B 2 HOH 116 316 269 HOH HOH A . B 2 HOH 117 317 270 HOH HOH A . B 2 HOH 118 318 271 HOH HOH A . B 2 HOH 119 319 272 HOH HOH A . B 2 HOH 120 320 273 HOH HOH A . B 2 HOH 121 321 274 HOH HOH A . B 2 HOH 122 322 275 HOH HOH A . B 2 HOH 123 323 276 HOH HOH A . B 2 HOH 124 324 277 HOH HOH A . B 2 HOH 125 325 278 HOH HOH A . B 2 HOH 126 326 279 HOH HOH A . B 2 HOH 127 327 280 HOH HOH A . B 2 HOH 128 328 281 HOH HOH A . B 2 HOH 129 329 282 HOH HOH A . B 2 HOH 130 330 283 HOH HOH A . B 2 HOH 131 331 284 HOH HOH A . B 2 HOH 132 332 285 HOH HOH A . B 2 HOH 133 333 286 HOH HOH A . B 2 HOH 134 334 287 HOH HOH A . B 2 HOH 135 335 288 HOH HOH A . B 2 HOH 136 336 289 HOH HOH A . B 2 HOH 137 337 290 HOH HOH A . B 2 HOH 138 338 291 HOH HOH A . B 2 HOH 139 339 292 HOH HOH A . B 2 HOH 140 340 293 HOH HOH A . B 2 HOH 141 341 294 HOH HOH A . B 2 HOH 142 342 295 HOH HOH A . B 2 HOH 143 343 296 HOH HOH A . B 2 HOH 144 344 297 HOH HOH A . B 2 HOH 145 345 298 HOH HOH A . B 2 HOH 146 346 299 HOH HOH A . B 2 HOH 147 347 300 HOH HOH A . B 2 HOH 148 348 301 HOH HOH A . B 2 HOH 149 349 302 HOH HOH A . B 2 HOH 150 350 303 HOH HOH A . B 2 HOH 151 351 304 HOH HOH A . B 2 HOH 152 352 305 HOH HOH A . B 2 HOH 153 353 306 HOH HOH A . B 2 HOH 154 354 307 HOH HOH A . B 2 HOH 155 355 308 HOH HOH A . B 2 HOH 156 356 309 HOH HOH A . B 2 HOH 157 357 310 HOH HOH A . B 2 HOH 158 358 311 HOH HOH A . B 2 HOH 159 359 312 HOH HOH A . B 2 HOH 160 360 313 HOH HOH A . B 2 HOH 161 361 314 HOH HOH A . B 2 HOH 162 362 315 HOH HOH A . B 2 HOH 163 363 316 HOH HOH A . B 2 HOH 164 364 317 HOH HOH A . B 2 HOH 165 365 318 HOH HOH A . B 2 HOH 166 366 319 HOH HOH A . B 2 HOH 167 367 320 HOH HOH A . B 2 HOH 168 368 321 HOH HOH A . B 2 HOH 169 369 322 HOH HOH A . B 2 HOH 170 370 323 HOH HOH A . B 2 HOH 171 371 324 HOH HOH A . B 2 HOH 172 372 325 HOH HOH A . B 2 HOH 173 373 326 HOH HOH A . B 2 HOH 174 374 327 HOH HOH A . B 2 HOH 175 375 328 HOH HOH A . B 2 HOH 176 376 329 HOH HOH A . B 2 HOH 177 377 330 HOH HOH A . B 2 HOH 178 378 331 HOH HOH A . B 2 HOH 179 379 332 HOH HOH A . B 2 HOH 180 380 333 HOH HOH A . B 2 HOH 181 381 334 HOH HOH A . B 2 HOH 182 382 335 HOH HOH A . B 2 HOH 183 383 336 HOH HOH A . B 2 HOH 184 384 337 HOH HOH A . B 2 HOH 185 385 338 HOH HOH A . B 2 HOH 186 386 339 HOH HOH A . B 2 HOH 187 387 340 HOH HOH A . B 2 HOH 188 388 341 HOH HOH A . B 2 HOH 189 389 342 HOH HOH A . B 2 HOH 190 390 343 HOH HOH A . B 2 HOH 191 391 344 HOH HOH A . B 2 HOH 192 392 345 HOH HOH A . B 2 HOH 193 393 346 HOH HOH A . B 2 HOH 194 394 347 HOH HOH A . B 2 HOH 195 395 348 HOH HOH A . B 2 HOH 196 396 349 HOH HOH A . B 2 HOH 197 397 350 HOH HOH A . B 2 HOH 198 398 351 HOH HOH A . B 2 HOH 199 399 352 HOH HOH A . B 2 HOH 200 400 353 HOH HOH A . B 2 HOH 201 401 354 HOH HOH A . B 2 HOH 202 402 355 HOH HOH A . B 2 HOH 203 403 356 HOH HOH A . B 2 HOH 204 404 357 HOH HOH A . B 2 HOH 205 405 358 HOH HOH A . B 2 HOH 206 406 359 HOH HOH A . B 2 HOH 207 407 360 HOH HOH A . B 2 HOH 208 408 361 HOH HOH A . B 2 HOH 209 409 362 HOH HOH A . B 2 HOH 210 410 363 HOH HOH A . B 2 HOH 211 411 364 HOH HOH A . B 2 HOH 212 412 365 HOH HOH A . B 2 HOH 213 413 366 HOH HOH A . B 2 HOH 214 414 367 HOH HOH A . B 2 HOH 215 415 368 HOH HOH A . B 2 HOH 216 416 369 HOH HOH A . B 2 HOH 217 417 370 HOH HOH A . B 2 HOH 218 418 371 HOH HOH A . B 2 HOH 219 419 372 HOH HOH A . B 2 HOH 220 420 373 HOH HOH A . B 2 HOH 221 421 374 HOH HOH A . B 2 HOH 222 422 375 HOH HOH A . B 2 HOH 223 423 376 HOH HOH A . B 2 HOH 224 424 377 HOH HOH A . B 2 HOH 225 425 378 HOH HOH A . B 2 HOH 226 426 379 HOH HOH A . B 2 HOH 227 427 380 HOH HOH A . B 2 HOH 228 428 381 HOH HOH A . B 2 HOH 229 429 382 HOH HOH A . B 2 HOH 230 430 383 HOH HOH A . B 2 HOH 231 431 384 HOH HOH A . B 2 HOH 232 432 385 HOH HOH A . B 2 HOH 233 433 386 HOH HOH A . B 2 HOH 234 434 387 HOH HOH A . B 2 HOH 235 435 388 HOH HOH A . B 2 HOH 236 436 389 HOH HOH A . B 2 HOH 237 437 390 HOH HOH A . B 2 HOH 238 438 391 HOH HOH A . B 2 HOH 239 439 392 HOH HOH A . B 2 HOH 240 440 393 HOH HOH A . B 2 HOH 241 441 394 HOH HOH A . B 2 HOH 242 442 395 HOH HOH A . B 2 HOH 243 443 396 HOH HOH A . B 2 HOH 244 444 397 HOH HOH A . B 2 HOH 245 445 398 HOH HOH A . B 2 HOH 246 446 399 HOH HOH A . B 2 HOH 247 447 400 HOH HOH A . B 2 HOH 248 448 401 HOH HOH A . B 2 HOH 249 449 402 HOH HOH A . B 2 HOH 250 450 403 HOH HOH A . B 2 HOH 251 451 404 HOH HOH A . B 2 HOH 252 452 405 HOH HOH A . B 2 HOH 253 453 406 HOH HOH A . B 2 HOH 254 454 407 HOH HOH A . B 2 HOH 255 455 408 HOH HOH A . B 2 HOH 256 456 409 HOH HOH A . B 2 HOH 257 457 410 HOH HOH A . B 2 HOH 258 458 411 HOH HOH A . B 2 HOH 259 459 412 HOH HOH A . B 2 HOH 260 460 413 HOH HOH A . B 2 HOH 261 461 414 HOH HOH A . B 2 HOH 262 462 415 HOH HOH A . B 2 HOH 263 463 416 HOH HOH A . B 2 HOH 264 464 417 HOH HOH A . B 2 HOH 265 465 418 HOH HOH A . B 2 HOH 266 466 419 HOH HOH A . B 2 HOH 267 467 420 HOH HOH A . B 2 HOH 268 468 421 HOH HOH A . B 2 HOH 269 469 422 HOH HOH A . B 2 HOH 270 470 423 HOH HOH A . B 2 HOH 271 471 424 HOH HOH A . B 2 HOH 272 472 425 HOH HOH A . B 2 HOH 273 473 426 HOH HOH A . B 2 HOH 274 474 427 HOH HOH A . B 2 HOH 275 475 428 HOH HOH A . B 2 HOH 276 476 429 HOH HOH A . B 2 HOH 277 477 430 HOH HOH A . B 2 HOH 278 478 431 HOH HOH A . B 2 HOH 279 479 432 HOH HOH A . B 2 HOH 280 480 433 HOH HOH A . B 2 HOH 281 481 434 HOH HOH A . B 2 HOH 282 482 435 HOH HOH A . B 2 HOH 283 483 436 HOH HOH A . B 2 HOH 284 484 437 HOH HOH A . B 2 HOH 285 485 438 HOH HOH A . B 2 HOH 286 486 439 HOH HOH A . B 2 HOH 287 487 440 HOH HOH A . B 2 HOH 288 488 441 HOH HOH A . B 2 HOH 289 489 442 HOH HOH A . B 2 HOH 290 490 443 HOH HOH A . B 2 HOH 291 491 444 HOH HOH A . B 2 HOH 292 492 445 HOH HOH A . B 2 HOH 293 493 446 HOH HOH A . B 2 HOH 294 494 447 HOH HOH A . B 2 HOH 295 495 448 HOH HOH A . B 2 HOH 296 496 449 HOH HOH A . B 2 HOH 297 497 450 HOH HOH A . B 2 HOH 298 498 451 HOH HOH A . B 2 HOH 299 499 452 HOH HOH A . B 2 HOH 300 500 453 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 46 ? MET SELENOMETHIONINE 2 A MSE 96 A MSE 119 ? MET SELENOMETHIONINE 3 A MSE 120 A MSE 143 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-16 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_citation_author.name' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4PS6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUES 25-153) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 120 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 361 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 87 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -151.56 _pdbx_validate_torsion.psi 52.46 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #