data_4QEV # _entry.id 4QEV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QEV pdb_00004qev 10.2210/pdb4qev/pdb RCSB RCSB085966 ? ? WWPDB D_1000085966 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4QEN . unspecified PDB 4QEP . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QEV _pdbx_database_status.recvd_initial_deposition_date 2014-05-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tallant, C.' 1 'Baud, M.' 2 'Lin-Shiao, E.' 3 'Chirgadze, D.Y.' 4 'Ciulli, A.' 5 # _citation.id primary _citation.title 'Chemical biology. A bump-and-hole approach to engineer controlled selectivity of BET bromodomain chemical probes.' _citation.journal_abbrev Science _citation.journal_volume 346 _citation.page_first 638 _citation.page_last 641 _citation.year 2014 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25323695 _citation.pdbx_database_id_DOI 10.1126/science.1249830 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baud, M.G.' 1 ? primary 'Lin-Shiao, E.' 2 ? primary 'Cardote, T.' 3 ? primary 'Tallant, C.' 4 ? primary 'Pschibul, A.' 5 ? primary 'Chan, K.H.' 6 ? primary 'Zengerle, M.' 7 ? primary 'Garcia, J.R.' 8 ? primary 'Kwan, T.T.' 9 ? primary 'Ferguson, F.M.' 10 ? primary 'Ciulli, A.' 11 ? # _cell.entry_id 4QEV _cell.length_a 52.516 _cell.length_b 71.468 _cell.length_c 32.067 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QEV _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 2' 13333.330 1 ? L383A 'unp residues 344-455' ? 2 non-polymer syn 'methyl (2R)-2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]propanoate' 424.880 1 ? ? ? ? 3 non-polymer syn 'NONAETHYLENE GLYCOL' 414.488 1 ? ? ? ? 4 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 69 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O27.1.1, Really interesting new gene 3 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGAHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_seq_one_letter_code_can ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGAHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLU n 1 8 GLN n 1 9 LEU n 1 10 LYS n 1 11 HIS n 1 12 CYS n 1 13 ASN n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 LYS n 1 18 GLU n 1 19 LEU n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 LYS n 1 24 HIS n 1 25 ALA n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 TRP n 1 30 PRO n 1 31 PHE n 1 32 TYR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 SER n 1 39 ALA n 1 40 LEU n 1 41 GLY n 1 42 ALA n 1 43 HIS n 1 44 ASP n 1 45 TYR n 1 46 HIS n 1 47 ASP n 1 48 ILE n 1 49 ILE n 1 50 LYS n 1 51 HIS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 ARG n 1 61 LYS n 1 62 MET n 1 63 GLU n 1 64 ASN n 1 65 ARG n 1 66 ASP n 1 67 TYR n 1 68 ARG n 1 69 ASP n 1 70 ALA n 1 71 GLN n 1 72 GLU n 1 73 PHE n 1 74 ALA n 1 75 ALA n 1 76 ASP n 1 77 VAL n 1 78 ARG n 1 79 LEU n 1 80 MET n 1 81 PHE n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 TYR n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 PRO n 1 90 PRO n 1 91 ASP n 1 92 HIS n 1 93 ASP n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 MET n 1 98 ALA n 1 99 ARG n 1 100 LYS n 1 101 LEU n 1 102 GLN n 1 103 ASP n 1 104 VAL n 1 105 PHE n 1 106 GLU n 1 107 PHE n 1 108 ARG n 1 109 TYR n 1 110 ALA n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD2, KIAA9001, RING3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'LIC cloning' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) Rosetta' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD2_HUMAN _struct_ref.pdbx_db_accession P25440 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFS NCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _struct_ref.pdbx_align_begin 344 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QEV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25440 _struct_ref_seq.db_align_beg 344 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 344 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4QEV SER A 1 ? UNP P25440 ? ? 'expression tag' 342 1 1 4QEV MET A 2 ? UNP P25440 ? ? 'expression tag' 343 2 1 4QEV ALA A 42 ? UNP P25440 LEU 383 'engineered mutation' 383 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PE non-polymer . 'NONAETHYLENE GLYCOL' ? 'C18 H38 O10' 414.488 31O non-polymer . 'methyl (2R)-2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]propanoate' ? 'C22 H21 Cl N4 O3' 424.880 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4QEV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '0.1M Hepes, 0.2M Imidazole, 41% PEG400, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker Platinum 135' _diffrn_detector.pdbx_collection_date 2013-04-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4QEV _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 32.1 _reflns.d_resolution_high 1.80 _reflns.number_obs 11157 _reflns.number_all 11758 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.110 _reflns.pdbx_Rsym_value 0.100 _reflns.pdbx_netI_over_sigmaI 11.3 _reflns.B_iso_Wilson_estimate 20 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.80 1.83 100 0.4619 0.2843 3.06 3.72 ? 566 ? ? ? ? 1 1 1.90 1.94 100 0.3357 0.2442 3.91 4.53 ? 567 ? ? ? ? 2 1 2.03 2.08 100 0.2183 0.1745 5.54 4.99 ? 551 ? ? ? ? 3 1 2.21 2.28 100 0.1558 0.1142 8.04 5.54 ? 583 ? ? ? ? 4 1 2.58 2.72 100 0.1180 0.0634 13.71 7.39 ? 590 ? ? ? ? 5 1 3.47 4.00 100 0.0895 0.0389 23.75 9.38 ? 588 ? ? ? ? 6 1 7.86 32 100 0.0622 0.0383 26.98 8.76 ? 178 ? ? ? ? 7 1 # _refine.entry_id 4QEV _refine.ls_number_reflns_obs 11157 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.07 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.39 _refine.ls_R_factor_obs 0.18902 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18715 _refine.ls_R_factor_R_free 0.22614 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 557 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.901 _refine.B_iso_mean 11.444 _refine.aniso_B[1][1] 0.20 _refine.aniso_B[2][2] -0.16 _refine.aniso_B[3][3] -0.04 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'pdb entry 2DVV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.087 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.542 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 907 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 1035 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 32.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.019 ? 1006 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 947 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.479 2.007 ? 1352 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.769 3.006 ? 2187 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.920 5.000 ? 113 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 32.396 23.400 ? 50 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.277 15.000 ? 169 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.431 15.000 ? 7 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.070 0.200 ? 132 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 1099 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 237 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.797 _refine_ls_shell.d_res_low 1.844 _refine_ls_shell.number_reflns_R_work 765 _refine_ls_shell.R_factor_R_work 0.273 _refine_ls_shell.percent_reflns_obs 95.01 _refine_ls_shell.R_factor_R_free 0.293 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4QEV _struct.title ;Crystal structure of BRD2(BD2) mutant with ligand ME bound (METHYL (2R)- 2-[(4S)-6-(4-CHLOROPHENYL)-8-METHOXY-1-METHYL-4H-[1,2,4]TRIAZOLO[4,3-A][1, 4]BENZODIAZEPIN-4-YL]PROPANOATE) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QEV _struct_keywords.pdbx_keywords 'transcription/transcription inhibitor' _struct_keywords.text 'Bromodomain-containing protein 2, KIAA9001, RING3, Transcription regulation, transcription-transcription inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 5 ? SER A 21 ? LEU A 346 SER A 362 1 ? 17 HELX_P HELX_P2 2 HIS A 24 ? TRP A 29 ? HIS A 365 TRP A 370 1 ? 6 HELX_P HELX_P3 3 PRO A 30 ? TYR A 32 ? PRO A 371 TYR A 373 5 ? 3 HELX_P HELX_P4 4 ASP A 36 ? GLY A 41 ? ASP A 377 GLY A 382 1 ? 6 HELX_P HELX_P5 5 ASP A 44 ? ILE A 49 ? ASP A 385 ILE A 390 1 ? 6 HELX_P HELX_P6 6 ASP A 54 ? ASN A 64 ? ASP A 395 ASN A 405 1 ? 11 HELX_P HELX_P7 7 ASP A 69 ? ASN A 88 ? ASP A 410 ASN A 429 1 ? 20 HELX_P HELX_P8 8 HIS A 92 ? ALA A 110 ? HIS A 433 ALA A 451 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 31O 501 ? 8 'BINDING SITE FOR RESIDUE 31O A 501' AC2 Software A 2PE 502 ? 3 'BINDING SITE FOR RESIDUE 2PE A 502' AC3 Software A NI 503 ? 4 'BINDING SITE FOR RESIDUE NI A 503' AC4 Software A GOL 504 ? 7 'BINDING SITE FOR RESIDUE GOL A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TRP A 29 ? TRP A 370 . ? 1_555 ? 2 AC1 8 PRO A 30 ? PRO A 371 . ? 1_555 ? 3 AC1 8 PHE A 31 ? PHE A 372 . ? 1_555 ? 4 AC1 8 TYR A 87 ? TYR A 428 . ? 1_555 ? 5 AC1 8 ASN A 88 ? ASN A 429 . ? 1_555 ? 6 AC1 8 VAL A 94 ? VAL A 435 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH A 638 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 667 . ? 1_555 ? 9 AC2 3 SER A 6 ? SER A 347 . ? 1_555 ? 10 AC2 3 LYS A 10 ? LYS A 351 . ? 1_555 ? 11 AC2 3 ARG A 65 ? ARG A 406 . ? 1_555 ? 12 AC3 4 ARG A 78 ? ARG A 419 . ? 2_755 ? 13 AC3 4 ARG A 78 ? ARG A 419 . ? 1_555 ? 14 AC3 4 HOH F . ? HOH A 604 . ? 1_555 ? 15 AC3 4 HOH F . ? HOH A 604 . ? 2_755 ? 16 AC4 7 LYS A 61 ? LYS A 402 . ? 1_555 ? 17 AC4 7 ASP A 66 ? ASP A 407 . ? 1_555 ? 18 AC4 7 MET A 97 ? MET A 438 . ? 1_554 ? 19 AC4 7 LYS A 100 ? LYS A 441 . ? 1_554 ? 20 AC4 7 HOH F . ? HOH A 619 . ? 1_555 ? 21 AC4 7 HOH F . ? HOH A 625 . ? 1_555 ? 22 AC4 7 HOH F . ? HOH A 652 . ? 1_555 ? # _database_PDB_matrix.entry_id 4QEV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4QEV _atom_sites.fract_transf_matrix[1][1] 0.019042 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013992 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031185 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 342 ? ? ? A . n A 1 2 MET 2 343 ? ? ? A . n A 1 3 GLY 3 344 ? ? ? A . n A 1 4 LYS 4 345 ? ? ? A . n A 1 5 LEU 5 346 346 LEU LEU A . n A 1 6 SER 6 347 347 SER SER A . n A 1 7 GLU 7 348 348 GLU GLU A . n A 1 8 GLN 8 349 349 GLN GLN A . n A 1 9 LEU 9 350 350 LEU LEU A . n A 1 10 LYS 10 351 351 LYS LYS A . n A 1 11 HIS 11 352 352 HIS HIS A . n A 1 12 CYS 12 353 353 CYS CYS A . n A 1 13 ASN 13 354 354 ASN ASN A . n A 1 14 GLY 14 355 355 GLY GLY A . n A 1 15 ILE 15 356 356 ILE ILE A . n A 1 16 LEU 16 357 357 LEU LEU A . n A 1 17 LYS 17 358 358 LYS LYS A . n A 1 18 GLU 18 359 359 GLU GLU A . n A 1 19 LEU 19 360 360 LEU LEU A . n A 1 20 LEU 20 361 361 LEU LEU A . n A 1 21 SER 21 362 362 SER SER A . n A 1 22 LYS 22 363 363 LYS LYS A . n A 1 23 LYS 23 364 364 LYS LYS A . n A 1 24 HIS 24 365 365 HIS HIS A . n A 1 25 ALA 25 366 366 ALA ALA A . n A 1 26 ALA 26 367 367 ALA ALA A . n A 1 27 TYR 27 368 368 TYR TYR A . n A 1 28 ALA 28 369 369 ALA ALA A . n A 1 29 TRP 29 370 370 TRP TRP A . n A 1 30 PRO 30 371 371 PRO PRO A . n A 1 31 PHE 31 372 372 PHE PHE A . n A 1 32 TYR 32 373 373 TYR TYR A . n A 1 33 LYS 33 374 374 LYS LYS A . n A 1 34 PRO 34 375 375 PRO PRO A . n A 1 35 VAL 35 376 376 VAL VAL A . n A 1 36 ASP 36 377 377 ASP ASP A . n A 1 37 ALA 37 378 378 ALA ALA A . n A 1 38 SER 38 379 379 SER SER A . n A 1 39 ALA 39 380 380 ALA ALA A . n A 1 40 LEU 40 381 381 LEU LEU A . n A 1 41 GLY 41 382 382 GLY GLY A . n A 1 42 ALA 42 383 383 ALA ALA A . n A 1 43 HIS 43 384 384 HIS HIS A . n A 1 44 ASP 44 385 385 ASP ASP A . n A 1 45 TYR 45 386 386 TYR TYR A . n A 1 46 HIS 46 387 387 HIS HIS A . n A 1 47 ASP 47 388 388 ASP ASP A . n A 1 48 ILE 48 389 389 ILE ILE A . n A 1 49 ILE 49 390 390 ILE ILE A . n A 1 50 LYS 50 391 391 LYS LYS A . n A 1 51 HIS 51 392 392 HIS HIS A . n A 1 52 PRO 52 393 393 PRO PRO A . n A 1 53 MET 53 394 394 MET MET A . n A 1 54 ASP 54 395 395 ASP ASP A . n A 1 55 LEU 55 396 396 LEU LEU A . n A 1 56 SER 56 397 397 SER SER A . n A 1 57 THR 57 398 398 THR THR A . n A 1 58 VAL 58 399 399 VAL VAL A . n A 1 59 LYS 59 400 400 LYS LYS A . n A 1 60 ARG 60 401 401 ARG ARG A . n A 1 61 LYS 61 402 402 LYS LYS A . n A 1 62 MET 62 403 403 MET MET A . n A 1 63 GLU 63 404 404 GLU GLU A . n A 1 64 ASN 64 405 405 ASN ASN A . n A 1 65 ARG 65 406 406 ARG ARG A . n A 1 66 ASP 66 407 407 ASP ASP A . n A 1 67 TYR 67 408 408 TYR TYR A . n A 1 68 ARG 68 409 409 ARG ARG A . n A 1 69 ASP 69 410 410 ASP ASP A . n A 1 70 ALA 70 411 411 ALA ALA A . n A 1 71 GLN 71 412 412 GLN GLN A . n A 1 72 GLU 72 413 413 GLU GLU A . n A 1 73 PHE 73 414 414 PHE PHE A . n A 1 74 ALA 74 415 415 ALA ALA A . n A 1 75 ALA 75 416 416 ALA ALA A . n A 1 76 ASP 76 417 417 ASP ASP A . n A 1 77 VAL 77 418 418 VAL VAL A . n A 1 78 ARG 78 419 419 ARG ARG A . n A 1 79 LEU 79 420 420 LEU LEU A . n A 1 80 MET 80 421 421 MET MET A . n A 1 81 PHE 81 422 422 PHE PHE A . n A 1 82 SER 82 423 423 SER SER A . n A 1 83 ASN 83 424 424 ASN ASN A . n A 1 84 CYS 84 425 425 CYS CYS A . n A 1 85 TYR 85 426 426 TYR TYR A . n A 1 86 LYS 86 427 427 LYS LYS A . n A 1 87 TYR 87 428 428 TYR TYR A . n A 1 88 ASN 88 429 429 ASN ASN A . n A 1 89 PRO 89 430 430 PRO PRO A . n A 1 90 PRO 90 431 431 PRO PRO A . n A 1 91 ASP 91 432 432 ASP ASP A . n A 1 92 HIS 92 433 433 HIS HIS A . n A 1 93 ASP 93 434 434 ASP ASP A . n A 1 94 VAL 94 435 435 VAL VAL A . n A 1 95 VAL 95 436 436 VAL VAL A . n A 1 96 ALA 96 437 437 ALA ALA A . n A 1 97 MET 97 438 438 MET MET A . n A 1 98 ALA 98 439 439 ALA ALA A . n A 1 99 ARG 99 440 440 ARG ARG A . n A 1 100 LYS 100 441 441 LYS LYS A . n A 1 101 LEU 101 442 442 LEU LEU A . n A 1 102 GLN 102 443 443 GLN GLN A . n A 1 103 ASP 103 444 444 ASP ASP A . n A 1 104 VAL 104 445 445 VAL VAL A . n A 1 105 PHE 105 446 446 PHE PHE A . n A 1 106 GLU 106 447 447 GLU GLU A . n A 1 107 PHE 107 448 448 PHE PHE A . n A 1 108 ARG 108 449 449 ARG ARG A . n A 1 109 TYR 109 450 450 TYR TYR A . n A 1 110 ALA 110 451 451 ALA ALA A . n A 1 111 LYS 111 452 452 LYS LYS A . n A 1 112 MET 112 453 453 MET MET A . n A 1 113 PRO 113 454 454 PRO PRO A . n A 1 114 ASP 114 455 455 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 31O 1 501 1 31O DRG A . C 3 2PE 1 502 2 2PE 2PE A . D 4 NI 1 503 3 NI NI A . E 5 GOL 1 504 4 GOL GOL A . F 6 HOH 1 601 1 HOH HOH A . F 6 HOH 2 602 2 HOH HOH A . F 6 HOH 3 603 3 HOH HOH A . F 6 HOH 4 604 4 HOH HOH A . F 6 HOH 5 605 5 HOH HOH A . F 6 HOH 6 606 6 HOH HOH A . F 6 HOH 7 607 7 HOH HOH A . F 6 HOH 8 608 8 HOH HOH A . F 6 HOH 9 609 9 HOH HOH A . F 6 HOH 10 610 10 HOH HOH A . F 6 HOH 11 611 11 HOH HOH A . F 6 HOH 12 612 12 HOH HOH A . F 6 HOH 13 613 13 HOH HOH A . F 6 HOH 14 614 14 HOH HOH A . F 6 HOH 15 615 15 HOH HOH A . F 6 HOH 16 616 16 HOH HOH A . F 6 HOH 17 617 17 HOH HOH A . F 6 HOH 18 618 18 HOH HOH A . F 6 HOH 19 619 19 HOH HOH A . F 6 HOH 20 620 20 HOH HOH A . F 6 HOH 21 621 21 HOH HOH A . F 6 HOH 22 622 22 HOH HOH A . F 6 HOH 23 623 23 HOH HOH A . F 6 HOH 24 624 24 HOH HOH A . F 6 HOH 25 625 25 HOH HOH A . F 6 HOH 26 626 26 HOH HOH A . F 6 HOH 27 627 27 HOH HOH A . F 6 HOH 28 628 28 HOH HOH A . F 6 HOH 29 629 29 HOH HOH A . F 6 HOH 30 630 30 HOH HOH A . F 6 HOH 31 631 31 HOH HOH A . F 6 HOH 32 632 32 HOH HOH A . F 6 HOH 33 633 33 HOH HOH A . F 6 HOH 34 634 34 HOH HOH A . F 6 HOH 35 635 35 HOH HOH A . F 6 HOH 36 636 36 HOH HOH A . F 6 HOH 37 637 37 HOH HOH A . F 6 HOH 38 638 38 HOH HOH A . F 6 HOH 39 639 39 HOH HOH A . F 6 HOH 40 640 40 HOH HOH A . F 6 HOH 41 641 41 HOH HOH A . F 6 HOH 42 642 42 HOH HOH A . F 6 HOH 43 643 43 HOH HOH A . F 6 HOH 44 644 44 HOH HOH A . F 6 HOH 45 645 45 HOH HOH A . F 6 HOH 46 646 46 HOH HOH A . F 6 HOH 47 647 47 HOH HOH A . F 6 HOH 48 648 48 HOH HOH A . F 6 HOH 49 649 49 HOH HOH A . F 6 HOH 50 650 50 HOH HOH A . F 6 HOH 51 651 51 HOH HOH A . F 6 HOH 52 652 52 HOH HOH A . F 6 HOH 53 653 53 HOH HOH A . F 6 HOH 54 654 54 HOH HOH A . F 6 HOH 55 655 55 HOH HOH A . F 6 HOH 56 656 56 HOH HOH A . F 6 HOH 57 657 57 HOH HOH A . F 6 HOH 58 658 58 HOH HOH A . F 6 HOH 59 659 59 HOH HOH A . F 6 HOH 60 660 60 HOH HOH A . F 6 HOH 61 661 61 HOH HOH A . F 6 HOH 62 662 62 HOH HOH A . F 6 HOH 63 663 63 HOH HOH A . F 6 HOH 64 664 64 HOH HOH A . F 6 HOH 65 665 65 HOH HOH A . F 6 HOH 66 666 66 HOH HOH A . F 6 HOH 67 667 67 HOH HOH A . F 6 HOH 68 668 68 HOH HOH A . F 6 HOH 69 669 69 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F 3 1,2 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3170 ? 2 MORE -13 ? 2 'SSA (A^2)' 11960 ? 3 'ABSA (A^2)' 2970 ? 3 MORE -1 ? 3 'SSA (A^2)' 12040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1.0000000000 0.0000000000 0.0000000000 105.0320000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NI _pdbx_struct_special_symmetry.auth_seq_id 503 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id NI _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-29 2 'Structure model' 1 1 2015-07-22 3 'Structure model' 1 2 2023-09-20 4 'Structure model' 1 3 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_database_related # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 4 'Structure model' '_pdbx_database_related.db_name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 62.5781 _pdbx_refine_tls.origin_y 2.8319 _pdbx_refine_tls.origin_z 64.9350 _pdbx_refine_tls.T[1][1] 0.0008 _pdbx_refine_tls.T[2][2] 0.0014 _pdbx_refine_tls.T[3][3] 0.0443 _pdbx_refine_tls.T[1][2] 0.0000 _pdbx_refine_tls.T[1][3] -0.0027 _pdbx_refine_tls.T[2][3] -0.0008 _pdbx_refine_tls.L[1][1] 0.3721 _pdbx_refine_tls.L[2][2] 0.8665 _pdbx_refine_tls.L[3][3] 0.0871 _pdbx_refine_tls.L[1][2] -0.1065 _pdbx_refine_tls.L[1][3] 0.0518 _pdbx_refine_tls.L[2][3] -0.1488 _pdbx_refine_tls.S[1][1] 0.0044 _pdbx_refine_tls.S[1][2] -0.0090 _pdbx_refine_tls.S[1][3] 0.0087 _pdbx_refine_tls.S[2][1] -0.0098 _pdbx_refine_tls.S[2][2] 0.0115 _pdbx_refine_tls.S[2][3] -0.0149 _pdbx_refine_tls.S[3][1] 0.0076 _pdbx_refine_tls.S[3][2] 0.0023 _pdbx_refine_tls.S[3][3] -0.0159 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 346 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 455 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal 'PROTEUM PLUS' 'data collection' PLUS ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 'PROTEUM PLUS' 'data reduction' PLUS ? 4 'PROTEUM PLUS' 'data scaling' PLUS ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 452 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -87.30 _pdbx_validate_torsion.psi 38.66 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 2PE 502 ? C23 ? C 2PE 1 C23 2 1 N 1 A 2PE 502 ? C24 ? C 2PE 1 C24 3 1 N 1 A 2PE 502 ? O25 ? C 2PE 1 O25 4 1 N 1 A 2PE 502 ? C26 ? C 2PE 1 C26 5 1 N 1 A 2PE 502 ? C27 ? C 2PE 1 C27 6 1 N 1 A 2PE 502 ? O28 ? C 2PE 1 O28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 342 ? A SER 1 2 1 Y 1 A MET 343 ? A MET 2 3 1 Y 1 A GLY 344 ? A GLY 3 4 1 Y 1 A LYS 345 ? A LYS 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2PE O1 O N N 1 2PE C2 C N N 2 2PE C3 C N N 3 2PE O4 O N N 4 2PE C5 C N N 5 2PE C6 C N N 6 2PE O7 O N N 7 2PE C8 C N N 8 2PE C9 C N N 9 2PE O10 O N N 10 2PE C11 C N N 11 2PE C12 C N N 12 2PE O13 O N N 13 2PE C14 C N N 14 2PE C15 C N N 15 2PE O16 O N N 16 2PE C17 C N N 17 2PE C18 C N N 18 2PE O19 O N N 19 2PE C20 C N N 20 2PE C21 C N N 21 2PE O22 O N N 22 2PE C23 C N N 23 2PE C24 C N N 24 2PE O25 O N N 25 2PE C26 C N N 26 2PE C27 C N N 27 2PE O28 O N N 28 2PE HO1 H N N 29 2PE H21 H N N 30 2PE H22 H N N 31 2PE H31 H N N 32 2PE H32 H N N 33 2PE H51 H N N 34 2PE H52 H N N 35 2PE H61 H N N 36 2PE H62 H N N 37 2PE H81 H N N 38 2PE H82 H N N 39 2PE H91 H N N 40 2PE H92 H N N 41 2PE H111 H N N 42 2PE H112 H N N 43 2PE H121 H N N 44 2PE H122 H N N 45 2PE H141 H N N 46 2PE H142 H N N 47 2PE H151 H N N 48 2PE H152 H N N 49 2PE H171 H N N 50 2PE H172 H N N 51 2PE H181 H N N 52 2PE H182 H N N 53 2PE H201 H N N 54 2PE H202 H N N 55 2PE H211 H N N 56 2PE H212 H N N 57 2PE H231 H N N 58 2PE H232 H N N 59 2PE H241 H N N 60 2PE H242 H N N 61 2PE H261 H N N 62 2PE H262 H N N 63 2PE H271 H N N 64 2PE H272 H N N 65 2PE HO2 H N N 66 31O CAW C N N 67 31O OAU O N N 68 31O CAT C N N 69 31O OAV O N N 70 31O CAS C N R 71 31O CBD C N N 72 31O CAI C N S 73 31O NAH N N N 74 31O CAJ C Y N 75 31O NAN N Y N 76 31O NAO N Y N 77 31O CAP C Y N 78 31O CAR C N N 79 31O NAK N Y N 80 31O CAE C Y N 81 31O CAF C Y N 82 31O CAA C Y N 83 31O CAB C Y N 84 31O OAL O N N 85 31O CAM C N N 86 31O CAC C Y N 87 31O CAD C Y N 88 31O CAG C N N 89 31O CAQ C Y N 90 31O CAX C Y N 91 31O CAY C Y N 92 31O CAZ C Y N 93 31O CL1 CL N N 94 31O CBA C Y N 95 31O CBB C Y N 96 31O H1 H N N 97 31O H2 H N N 98 31O H3 H N N 99 31O H4 H N N 100 31O H5 H N N 101 31O H6 H N N 102 31O H7 H N N 103 31O H8 H N N 104 31O H9 H N N 105 31O H10 H N N 106 31O H11 H N N 107 31O H12 H N N 108 31O H13 H N N 109 31O H14 H N N 110 31O H15 H N N 111 31O H16 H N N 112 31O H17 H N N 113 31O H18 H N N 114 31O H19 H N N 115 31O H20 H N N 116 31O H21 H N N 117 ALA N N N N 118 ALA CA C N S 119 ALA C C N N 120 ALA O O N N 121 ALA CB C N N 122 ALA OXT O N N 123 ALA H H N N 124 ALA H2 H N N 125 ALA HA H N N 126 ALA HB1 H N N 127 ALA HB2 H N N 128 ALA HB3 H N N 129 ALA HXT H N N 130 ARG N N N N 131 ARG CA C N S 132 ARG C C N N 133 ARG O O N N 134 ARG CB C N N 135 ARG CG C N N 136 ARG CD C N N 137 ARG NE N N N 138 ARG CZ C N N 139 ARG NH1 N N N 140 ARG NH2 N N N 141 ARG OXT O N N 142 ARG H H N N 143 ARG H2 H N N 144 ARG HA H N N 145 ARG HB2 H N N 146 ARG HB3 H N N 147 ARG HG2 H N N 148 ARG HG3 H N N 149 ARG HD2 H N N 150 ARG HD3 H N N 151 ARG HE H N N 152 ARG HH11 H N N 153 ARG HH12 H N N 154 ARG HH21 H N N 155 ARG HH22 H N N 156 ARG HXT H N N 157 ASN N N N N 158 ASN CA C N S 159 ASN C C N N 160 ASN O O N N 161 ASN CB C N N 162 ASN CG C N N 163 ASN OD1 O N N 164 ASN ND2 N N N 165 ASN OXT O N N 166 ASN H H N N 167 ASN H2 H N N 168 ASN HA H N N 169 ASN HB2 H N N 170 ASN HB3 H N N 171 ASN HD21 H N N 172 ASN HD22 H N N 173 ASN HXT H N N 174 ASP N N N N 175 ASP CA C N S 176 ASP C C N N 177 ASP O O N N 178 ASP CB C N N 179 ASP CG C N N 180 ASP OD1 O N N 181 ASP OD2 O N N 182 ASP OXT O N N 183 ASP H H N N 184 ASP H2 H N N 185 ASP HA H N N 186 ASP HB2 H N N 187 ASP HB3 H N N 188 ASP HD2 H N N 189 ASP HXT H N N 190 CYS N N N N 191 CYS CA C N R 192 CYS C C N N 193 CYS O O N N 194 CYS CB C N N 195 CYS SG S N N 196 CYS OXT O N N 197 CYS H H N N 198 CYS H2 H N N 199 CYS HA H N N 200 CYS HB2 H N N 201 CYS HB3 H N N 202 CYS HG H N N 203 CYS HXT H N N 204 GLN N N N N 205 GLN CA C N S 206 GLN C C N N 207 GLN O O N N 208 GLN CB C N N 209 GLN CG C N N 210 GLN CD C N N 211 GLN OE1 O N N 212 GLN NE2 N N N 213 GLN OXT O N N 214 GLN H H N N 215 GLN H2 H N N 216 GLN HA H N N 217 GLN HB2 H N N 218 GLN HB3 H N N 219 GLN HG2 H N N 220 GLN HG3 H N N 221 GLN HE21 H N N 222 GLN HE22 H N N 223 GLN HXT H N N 224 GLU N N N N 225 GLU CA C N S 226 GLU C C N N 227 GLU O O N N 228 GLU CB C N N 229 GLU CG C N N 230 GLU CD C N N 231 GLU OE1 O N N 232 GLU OE2 O N N 233 GLU OXT O N N 234 GLU H H N N 235 GLU H2 H N N 236 GLU HA H N N 237 GLU HB2 H N N 238 GLU HB3 H N N 239 GLU HG2 H N N 240 GLU HG3 H N N 241 GLU HE2 H N N 242 GLU HXT H N N 243 GLY N N N N 244 GLY CA C N N 245 GLY C C N N 246 GLY O O N N 247 GLY OXT O N N 248 GLY H H N N 249 GLY H2 H N N 250 GLY HA2 H N N 251 GLY HA3 H N N 252 GLY HXT H N N 253 GOL C1 C N N 254 GOL O1 O N N 255 GOL C2 C N N 256 GOL O2 O N N 257 GOL C3 C N N 258 GOL O3 O N N 259 GOL H11 H N N 260 GOL H12 H N N 261 GOL HO1 H N N 262 GOL H2 H N N 263 GOL HO2 H N N 264 GOL H31 H N N 265 GOL H32 H N N 266 GOL HO3 H N N 267 HIS N N N N 268 HIS CA C N S 269 HIS C C N N 270 HIS O O N N 271 HIS CB C N N 272 HIS CG C Y N 273 HIS ND1 N Y N 274 HIS CD2 C Y N 275 HIS CE1 C Y N 276 HIS NE2 N Y N 277 HIS OXT O N N 278 HIS H H N N 279 HIS H2 H N N 280 HIS HA H N N 281 HIS HB2 H N N 282 HIS HB3 H N N 283 HIS HD1 H N N 284 HIS HD2 H N N 285 HIS HE1 H N N 286 HIS HE2 H N N 287 HIS HXT H N N 288 HOH O O N N 289 HOH H1 H N N 290 HOH H2 H N N 291 ILE N N N N 292 ILE CA C N S 293 ILE C C N N 294 ILE O O N N 295 ILE CB C N S 296 ILE CG1 C N N 297 ILE CG2 C N N 298 ILE CD1 C N N 299 ILE OXT O N N 300 ILE H H N N 301 ILE H2 H N N 302 ILE HA H N N 303 ILE HB H N N 304 ILE HG12 H N N 305 ILE HG13 H N N 306 ILE HG21 H N N 307 ILE HG22 H N N 308 ILE HG23 H N N 309 ILE HD11 H N N 310 ILE HD12 H N N 311 ILE HD13 H N N 312 ILE HXT H N N 313 LEU N N N N 314 LEU CA C N S 315 LEU C C N N 316 LEU O O N N 317 LEU CB C N N 318 LEU CG C N N 319 LEU CD1 C N N 320 LEU CD2 C N N 321 LEU OXT O N N 322 LEU H H N N 323 LEU H2 H N N 324 LEU HA H N N 325 LEU HB2 H N N 326 LEU HB3 H N N 327 LEU HG H N N 328 LEU HD11 H N N 329 LEU HD12 H N N 330 LEU HD13 H N N 331 LEU HD21 H N N 332 LEU HD22 H N N 333 LEU HD23 H N N 334 LEU HXT H N N 335 LYS N N N N 336 LYS CA C N S 337 LYS C C N N 338 LYS O O N N 339 LYS CB C N N 340 LYS CG C N N 341 LYS CD C N N 342 LYS CE C N N 343 LYS NZ N N N 344 LYS OXT O N N 345 LYS H H N N 346 LYS H2 H N N 347 LYS HA H N N 348 LYS HB2 H N N 349 LYS HB3 H N N 350 LYS HG2 H N N 351 LYS HG3 H N N 352 LYS HD2 H N N 353 LYS HD3 H N N 354 LYS HE2 H N N 355 LYS HE3 H N N 356 LYS HZ1 H N N 357 LYS HZ2 H N N 358 LYS HZ3 H N N 359 LYS HXT H N N 360 MET N N N N 361 MET CA C N S 362 MET C C N N 363 MET O O N N 364 MET CB C N N 365 MET CG C N N 366 MET SD S N N 367 MET CE C N N 368 MET OXT O N N 369 MET H H N N 370 MET H2 H N N 371 MET HA H N N 372 MET HB2 H N N 373 MET HB3 H N N 374 MET HG2 H N N 375 MET HG3 H N N 376 MET HE1 H N N 377 MET HE2 H N N 378 MET HE3 H N N 379 MET HXT H N N 380 NI NI NI N N 381 PHE N N N N 382 PHE CA C N S 383 PHE C C N N 384 PHE O O N N 385 PHE CB C N N 386 PHE CG C Y N 387 PHE CD1 C Y N 388 PHE CD2 C Y N 389 PHE CE1 C Y N 390 PHE CE2 C Y N 391 PHE CZ C Y N 392 PHE OXT O N N 393 PHE H H N N 394 PHE H2 H N N 395 PHE HA H N N 396 PHE HB2 H N N 397 PHE HB3 H N N 398 PHE HD1 H N N 399 PHE HD2 H N N 400 PHE HE1 H N N 401 PHE HE2 H N N 402 PHE HZ H N N 403 PHE HXT H N N 404 PRO N N N N 405 PRO CA C N S 406 PRO C C N N 407 PRO O O N N 408 PRO CB C N N 409 PRO CG C N N 410 PRO CD C N N 411 PRO OXT O N N 412 PRO H H N N 413 PRO HA H N N 414 PRO HB2 H N N 415 PRO HB3 H N N 416 PRO HG2 H N N 417 PRO HG3 H N N 418 PRO HD2 H N N 419 PRO HD3 H N N 420 PRO HXT H N N 421 SER N N N N 422 SER CA C N S 423 SER C C N N 424 SER O O N N 425 SER CB C N N 426 SER OG O N N 427 SER OXT O N N 428 SER H H N N 429 SER H2 H N N 430 SER HA H N N 431 SER HB2 H N N 432 SER HB3 H N N 433 SER HG H N N 434 SER HXT H N N 435 THR N N N N 436 THR CA C N S 437 THR C C N N 438 THR O O N N 439 THR CB C N R 440 THR OG1 O N N 441 THR CG2 C N N 442 THR OXT O N N 443 THR H H N N 444 THR H2 H N N 445 THR HA H N N 446 THR HB H N N 447 THR HG1 H N N 448 THR HG21 H N N 449 THR HG22 H N N 450 THR HG23 H N N 451 THR HXT H N N 452 TRP N N N N 453 TRP CA C N S 454 TRP C C N N 455 TRP O O N N 456 TRP CB C N N 457 TRP CG C Y N 458 TRP CD1 C Y N 459 TRP CD2 C Y N 460 TRP NE1 N Y N 461 TRP CE2 C Y N 462 TRP CE3 C Y N 463 TRP CZ2 C Y N 464 TRP CZ3 C Y N 465 TRP CH2 C Y N 466 TRP OXT O N N 467 TRP H H N N 468 TRP H2 H N N 469 TRP HA H N N 470 TRP HB2 H N N 471 TRP HB3 H N N 472 TRP HD1 H N N 473 TRP HE1 H N N 474 TRP HE3 H N N 475 TRP HZ2 H N N 476 TRP HZ3 H N N 477 TRP HH2 H N N 478 TRP HXT H N N 479 TYR N N N N 480 TYR CA C N S 481 TYR C C N N 482 TYR O O N N 483 TYR CB C N N 484 TYR CG C Y N 485 TYR CD1 C Y N 486 TYR CD2 C Y N 487 TYR CE1 C Y N 488 TYR CE2 C Y N 489 TYR CZ C Y N 490 TYR OH O N N 491 TYR OXT O N N 492 TYR H H N N 493 TYR H2 H N N 494 TYR HA H N N 495 TYR HB2 H N N 496 TYR HB3 H N N 497 TYR HD1 H N N 498 TYR HD2 H N N 499 TYR HE1 H N N 500 TYR HE2 H N N 501 TYR HH H N N 502 TYR HXT H N N 503 VAL N N N N 504 VAL CA C N S 505 VAL C C N N 506 VAL O O N N 507 VAL CB C N N 508 VAL CG1 C N N 509 VAL CG2 C N N 510 VAL OXT O N N 511 VAL H H N N 512 VAL H2 H N N 513 VAL HA H N N 514 VAL HB H N N 515 VAL HG11 H N N 516 VAL HG12 H N N 517 VAL HG13 H N N 518 VAL HG21 H N N 519 VAL HG22 H N N 520 VAL HG23 H N N 521 VAL HXT H N N 522 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2PE O1 C2 sing N N 1 2PE O1 HO1 sing N N 2 2PE C2 C3 sing N N 3 2PE C2 H21 sing N N 4 2PE C2 H22 sing N N 5 2PE C3 O4 sing N N 6 2PE C3 H31 sing N N 7 2PE C3 H32 sing N N 8 2PE O4 C5 sing N N 9 2PE C5 C6 sing N N 10 2PE C5 H51 sing N N 11 2PE C5 H52 sing N N 12 2PE C6 O7 sing N N 13 2PE C6 H61 sing N N 14 2PE C6 H62 sing N N 15 2PE O7 C8 sing N N 16 2PE C8 C9 sing N N 17 2PE C8 H81 sing N N 18 2PE C8 H82 sing N N 19 2PE C9 O10 sing N N 20 2PE C9 H91 sing N N 21 2PE C9 H92 sing N N 22 2PE O10 C11 sing N N 23 2PE C11 C12 sing N N 24 2PE C11 H111 sing N N 25 2PE C11 H112 sing N N 26 2PE C12 O13 sing N N 27 2PE C12 H121 sing N N 28 2PE C12 H122 sing N N 29 2PE O13 C14 sing N N 30 2PE C14 C15 sing N N 31 2PE C14 H141 sing N N 32 2PE C14 H142 sing N N 33 2PE C15 O16 sing N N 34 2PE C15 H151 sing N N 35 2PE C15 H152 sing N N 36 2PE O16 C17 sing N N 37 2PE C17 C18 sing N N 38 2PE C17 H171 sing N N 39 2PE C17 H172 sing N N 40 2PE C18 O19 sing N N 41 2PE C18 H181 sing N N 42 2PE C18 H182 sing N N 43 2PE O19 C20 sing N N 44 2PE C20 C21 sing N N 45 2PE C20 H201 sing N N 46 2PE C20 H202 sing N N 47 2PE C21 O22 sing N N 48 2PE C21 H211 sing N N 49 2PE C21 H212 sing N N 50 2PE O22 C23 sing N N 51 2PE C23 C24 sing N N 52 2PE C23 H231 sing N N 53 2PE C23 H232 sing N N 54 2PE C24 O25 sing N N 55 2PE C24 H241 sing N N 56 2PE C24 H242 sing N N 57 2PE O25 C26 sing N N 58 2PE C26 C27 sing N N 59 2PE C26 H261 sing N N 60 2PE C26 H262 sing N N 61 2PE C27 O28 sing N N 62 2PE C27 H271 sing N N 63 2PE C27 H272 sing N N 64 2PE O28 HO2 sing N N 65 31O CAR CAP sing N N 66 31O NAO CAP doub Y N 67 31O NAO NAN sing Y N 68 31O CAP NAK sing Y N 69 31O CBD CAS sing N N 70 31O CAF CAA doub Y N 71 31O CAF CAE sing Y N 72 31O NAN CAJ doub Y N 73 31O CAA CAB sing Y N 74 31O NAK CAJ sing Y N 75 31O NAK CAE sing N N 76 31O CAJ CAI sing N N 77 31O CAE CAD doub Y N 78 31O CAM OAL sing N N 79 31O CAS CAI sing N N 80 31O CAS CAT sing N N 81 31O CAI NAH sing N N 82 31O CAB OAL sing N N 83 31O CAB CAC doub Y N 84 31O CAD CAC sing Y N 85 31O CAD CAG sing N N 86 31O CAT OAU sing N N 87 31O CAT OAV doub N N 88 31O OAU CAW sing N N 89 31O NAH CAG doub N N 90 31O CAG CAQ sing N N 91 31O CAQ CBB doub Y N 92 31O CAQ CAX sing Y N 93 31O CBB CBA sing Y N 94 31O CAX CAY doub Y N 95 31O CBA CAZ doub Y N 96 31O CAY CAZ sing Y N 97 31O CAZ CL1 sing N N 98 31O CAW H1 sing N N 99 31O CAW H2 sing N N 100 31O CAW H3 sing N N 101 31O CAS H4 sing N N 102 31O CBD H5 sing N N 103 31O CBD H6 sing N N 104 31O CBD H7 sing N N 105 31O CAI H8 sing N N 106 31O CAR H9 sing N N 107 31O CAR H10 sing N N 108 31O CAR H11 sing N N 109 31O CAF H12 sing N N 110 31O CAA H13 sing N N 111 31O CAM H14 sing N N 112 31O CAM H15 sing N N 113 31O CAM H16 sing N N 114 31O CAC H17 sing N N 115 31O CAX H18 sing N N 116 31O CAY H19 sing N N 117 31O CBA H20 sing N N 118 31O CBB H21 sing N N 119 ALA N CA sing N N 120 ALA N H sing N N 121 ALA N H2 sing N N 122 ALA CA C sing N N 123 ALA CA CB sing N N 124 ALA CA HA sing N N 125 ALA C O doub N N 126 ALA C OXT sing N N 127 ALA CB HB1 sing N N 128 ALA CB HB2 sing N N 129 ALA CB HB3 sing N N 130 ALA OXT HXT sing N N 131 ARG N CA sing N N 132 ARG N H sing N N 133 ARG N H2 sing N N 134 ARG CA C sing N N 135 ARG CA CB sing N N 136 ARG CA HA sing N N 137 ARG C O doub N N 138 ARG C OXT sing N N 139 ARG CB CG sing N N 140 ARG CB HB2 sing N N 141 ARG CB HB3 sing N N 142 ARG CG CD sing N N 143 ARG CG HG2 sing N N 144 ARG CG HG3 sing N N 145 ARG CD NE sing N N 146 ARG CD HD2 sing N N 147 ARG CD HD3 sing N N 148 ARG NE CZ sing N N 149 ARG NE HE sing N N 150 ARG CZ NH1 sing N N 151 ARG CZ NH2 doub N N 152 ARG NH1 HH11 sing N N 153 ARG NH1 HH12 sing N N 154 ARG NH2 HH21 sing N N 155 ARG NH2 HH22 sing N N 156 ARG OXT HXT sing N N 157 ASN N CA sing N N 158 ASN N H sing N N 159 ASN N H2 sing N N 160 ASN CA C sing N N 161 ASN CA CB sing N N 162 ASN CA HA sing N N 163 ASN C O doub N N 164 ASN C OXT sing N N 165 ASN CB CG sing N N 166 ASN CB HB2 sing N N 167 ASN CB HB3 sing N N 168 ASN CG OD1 doub N N 169 ASN CG ND2 sing N N 170 ASN ND2 HD21 sing N N 171 ASN ND2 HD22 sing N N 172 ASN OXT HXT sing N N 173 ASP N CA sing N N 174 ASP N H sing N N 175 ASP N H2 sing N N 176 ASP CA C sing N N 177 ASP CA CB sing N N 178 ASP CA HA sing N N 179 ASP C O doub N N 180 ASP C OXT sing N N 181 ASP CB CG sing N N 182 ASP CB HB2 sing N N 183 ASP CB HB3 sing N N 184 ASP CG OD1 doub N N 185 ASP CG OD2 sing N N 186 ASP OD2 HD2 sing N N 187 ASP OXT HXT sing N N 188 CYS N CA sing N N 189 CYS N H sing N N 190 CYS N H2 sing N N 191 CYS CA C sing N N 192 CYS CA CB sing N N 193 CYS CA HA sing N N 194 CYS C O doub N N 195 CYS C OXT sing N N 196 CYS CB SG sing N N 197 CYS CB HB2 sing N N 198 CYS CB HB3 sing N N 199 CYS SG HG sing N N 200 CYS OXT HXT sing N N 201 GLN N CA sing N N 202 GLN N H sing N N 203 GLN N H2 sing N N 204 GLN CA C sing N N 205 GLN CA CB sing N N 206 GLN CA HA sing N N 207 GLN C O doub N N 208 GLN C OXT sing N N 209 GLN CB CG sing N N 210 GLN CB HB2 sing N N 211 GLN CB HB3 sing N N 212 GLN CG CD sing N N 213 GLN CG HG2 sing N N 214 GLN CG HG3 sing N N 215 GLN CD OE1 doub N N 216 GLN CD NE2 sing N N 217 GLN NE2 HE21 sing N N 218 GLN NE2 HE22 sing N N 219 GLN OXT HXT sing N N 220 GLU N CA sing N N 221 GLU N H sing N N 222 GLU N H2 sing N N 223 GLU CA C sing N N 224 GLU CA CB sing N N 225 GLU CA HA sing N N 226 GLU C O doub N N 227 GLU C OXT sing N N 228 GLU CB CG sing N N 229 GLU CB HB2 sing N N 230 GLU CB HB3 sing N N 231 GLU CG CD sing N N 232 GLU CG HG2 sing N N 233 GLU CG HG3 sing N N 234 GLU CD OE1 doub N N 235 GLU CD OE2 sing N N 236 GLU OE2 HE2 sing N N 237 GLU OXT HXT sing N N 238 GLY N CA sing N N 239 GLY N H sing N N 240 GLY N H2 sing N N 241 GLY CA C sing N N 242 GLY CA HA2 sing N N 243 GLY CA HA3 sing N N 244 GLY C O doub N N 245 GLY C OXT sing N N 246 GLY OXT HXT sing N N 247 GOL C1 O1 sing N N 248 GOL C1 C2 sing N N 249 GOL C1 H11 sing N N 250 GOL C1 H12 sing N N 251 GOL O1 HO1 sing N N 252 GOL C2 O2 sing N N 253 GOL C2 C3 sing N N 254 GOL C2 H2 sing N N 255 GOL O2 HO2 sing N N 256 GOL C3 O3 sing N N 257 GOL C3 H31 sing N N 258 GOL C3 H32 sing N N 259 GOL O3 HO3 sing N N 260 HIS N CA sing N N 261 HIS N H sing N N 262 HIS N H2 sing N N 263 HIS CA C sing N N 264 HIS CA CB sing N N 265 HIS CA HA sing N N 266 HIS C O doub N N 267 HIS C OXT sing N N 268 HIS CB CG sing N N 269 HIS CB HB2 sing N N 270 HIS CB HB3 sing N N 271 HIS CG ND1 sing Y N 272 HIS CG CD2 doub Y N 273 HIS ND1 CE1 doub Y N 274 HIS ND1 HD1 sing N N 275 HIS CD2 NE2 sing Y N 276 HIS CD2 HD2 sing N N 277 HIS CE1 NE2 sing Y N 278 HIS CE1 HE1 sing N N 279 HIS NE2 HE2 sing N N 280 HIS OXT HXT sing N N 281 HOH O H1 sing N N 282 HOH O H2 sing N N 283 ILE N CA sing N N 284 ILE N H sing N N 285 ILE N H2 sing N N 286 ILE CA C sing N N 287 ILE CA CB sing N N 288 ILE CA HA sing N N 289 ILE C O doub N N 290 ILE C OXT sing N N 291 ILE CB CG1 sing N N 292 ILE CB CG2 sing N N 293 ILE CB HB sing N N 294 ILE CG1 CD1 sing N N 295 ILE CG1 HG12 sing N N 296 ILE CG1 HG13 sing N N 297 ILE CG2 HG21 sing N N 298 ILE CG2 HG22 sing N N 299 ILE CG2 HG23 sing N N 300 ILE CD1 HD11 sing N N 301 ILE CD1 HD12 sing N N 302 ILE CD1 HD13 sing N N 303 ILE OXT HXT sing N N 304 LEU N CA sing N N 305 LEU N H sing N N 306 LEU N H2 sing N N 307 LEU CA C sing N N 308 LEU CA CB sing N N 309 LEU CA HA sing N N 310 LEU C O doub N N 311 LEU C OXT sing N N 312 LEU CB CG sing N N 313 LEU CB HB2 sing N N 314 LEU CB HB3 sing N N 315 LEU CG CD1 sing N N 316 LEU CG CD2 sing N N 317 LEU CG HG sing N N 318 LEU CD1 HD11 sing N N 319 LEU CD1 HD12 sing N N 320 LEU CD1 HD13 sing N N 321 LEU CD2 HD21 sing N N 322 LEU CD2 HD22 sing N N 323 LEU CD2 HD23 sing N N 324 LEU OXT HXT sing N N 325 LYS N CA sing N N 326 LYS N H sing N N 327 LYS N H2 sing N N 328 LYS CA C sing N N 329 LYS CA CB sing N N 330 LYS CA HA sing N N 331 LYS C O doub N N 332 LYS C OXT sing N N 333 LYS CB CG sing N N 334 LYS CB HB2 sing N N 335 LYS CB HB3 sing N N 336 LYS CG CD sing N N 337 LYS CG HG2 sing N N 338 LYS CG HG3 sing N N 339 LYS CD CE sing N N 340 LYS CD HD2 sing N N 341 LYS CD HD3 sing N N 342 LYS CE NZ sing N N 343 LYS CE HE2 sing N N 344 LYS CE HE3 sing N N 345 LYS NZ HZ1 sing N N 346 LYS NZ HZ2 sing N N 347 LYS NZ HZ3 sing N N 348 LYS OXT HXT sing N N 349 MET N CA sing N N 350 MET N H sing N N 351 MET N H2 sing N N 352 MET CA C sing N N 353 MET CA CB sing N N 354 MET CA HA sing N N 355 MET C O doub N N 356 MET C OXT sing N N 357 MET CB CG sing N N 358 MET CB HB2 sing N N 359 MET CB HB3 sing N N 360 MET CG SD sing N N 361 MET CG HG2 sing N N 362 MET CG HG3 sing N N 363 MET SD CE sing N N 364 MET CE HE1 sing N N 365 MET CE HE2 sing N N 366 MET CE HE3 sing N N 367 MET OXT HXT sing N N 368 PHE N CA sing N N 369 PHE N H sing N N 370 PHE N H2 sing N N 371 PHE CA C sing N N 372 PHE CA CB sing N N 373 PHE CA HA sing N N 374 PHE C O doub N N 375 PHE C OXT sing N N 376 PHE CB CG sing N N 377 PHE CB HB2 sing N N 378 PHE CB HB3 sing N N 379 PHE CG CD1 doub Y N 380 PHE CG CD2 sing Y N 381 PHE CD1 CE1 sing Y N 382 PHE CD1 HD1 sing N N 383 PHE CD2 CE2 doub Y N 384 PHE CD2 HD2 sing N N 385 PHE CE1 CZ doub Y N 386 PHE CE1 HE1 sing N N 387 PHE CE2 CZ sing Y N 388 PHE CE2 HE2 sing N N 389 PHE CZ HZ sing N N 390 PHE OXT HXT sing N N 391 PRO N CA sing N N 392 PRO N CD sing N N 393 PRO N H sing N N 394 PRO CA C sing N N 395 PRO CA CB sing N N 396 PRO CA HA sing N N 397 PRO C O doub N N 398 PRO C OXT sing N N 399 PRO CB CG sing N N 400 PRO CB HB2 sing N N 401 PRO CB HB3 sing N N 402 PRO CG CD sing N N 403 PRO CG HG2 sing N N 404 PRO CG HG3 sing N N 405 PRO CD HD2 sing N N 406 PRO CD HD3 sing N N 407 PRO OXT HXT sing N N 408 SER N CA sing N N 409 SER N H sing N N 410 SER N H2 sing N N 411 SER CA C sing N N 412 SER CA CB sing N N 413 SER CA HA sing N N 414 SER C O doub N N 415 SER C OXT sing N N 416 SER CB OG sing N N 417 SER CB HB2 sing N N 418 SER CB HB3 sing N N 419 SER OG HG sing N N 420 SER OXT HXT sing N N 421 THR N CA sing N N 422 THR N H sing N N 423 THR N H2 sing N N 424 THR CA C sing N N 425 THR CA CB sing N N 426 THR CA HA sing N N 427 THR C O doub N N 428 THR C OXT sing N N 429 THR CB OG1 sing N N 430 THR CB CG2 sing N N 431 THR CB HB sing N N 432 THR OG1 HG1 sing N N 433 THR CG2 HG21 sing N N 434 THR CG2 HG22 sing N N 435 THR CG2 HG23 sing N N 436 THR OXT HXT sing N N 437 TRP N CA sing N N 438 TRP N H sing N N 439 TRP N H2 sing N N 440 TRP CA C sing N N 441 TRP CA CB sing N N 442 TRP CA HA sing N N 443 TRP C O doub N N 444 TRP C OXT sing N N 445 TRP CB CG sing N N 446 TRP CB HB2 sing N N 447 TRP CB HB3 sing N N 448 TRP CG CD1 doub Y N 449 TRP CG CD2 sing Y N 450 TRP CD1 NE1 sing Y N 451 TRP CD1 HD1 sing N N 452 TRP CD2 CE2 doub Y N 453 TRP CD2 CE3 sing Y N 454 TRP NE1 CE2 sing Y N 455 TRP NE1 HE1 sing N N 456 TRP CE2 CZ2 sing Y N 457 TRP CE3 CZ3 doub Y N 458 TRP CE3 HE3 sing N N 459 TRP CZ2 CH2 doub Y N 460 TRP CZ2 HZ2 sing N N 461 TRP CZ3 CH2 sing Y N 462 TRP CZ3 HZ3 sing N N 463 TRP CH2 HH2 sing N N 464 TRP OXT HXT sing N N 465 TYR N CA sing N N 466 TYR N H sing N N 467 TYR N H2 sing N N 468 TYR CA C sing N N 469 TYR CA CB sing N N 470 TYR CA HA sing N N 471 TYR C O doub N N 472 TYR C OXT sing N N 473 TYR CB CG sing N N 474 TYR CB HB2 sing N N 475 TYR CB HB3 sing N N 476 TYR CG CD1 doub Y N 477 TYR CG CD2 sing Y N 478 TYR CD1 CE1 sing Y N 479 TYR CD1 HD1 sing N N 480 TYR CD2 CE2 doub Y N 481 TYR CD2 HD2 sing N N 482 TYR CE1 CZ doub Y N 483 TYR CE1 HE1 sing N N 484 TYR CE2 CZ sing Y N 485 TYR CE2 HE2 sing N N 486 TYR CZ OH sing N N 487 TYR OH HH sing N N 488 TYR OXT HXT sing N N 489 VAL N CA sing N N 490 VAL N H sing N N 491 VAL N H2 sing N N 492 VAL CA C sing N N 493 VAL CA CB sing N N 494 VAL CA HA sing N N 495 VAL C O doub N N 496 VAL C OXT sing N N 497 VAL CB CG1 sing N N 498 VAL CB CG2 sing N N 499 VAL CB HB sing N N 500 VAL CG1 HG11 sing N N 501 VAL CG1 HG12 sing N N 502 VAL CG1 HG13 sing N N 503 VAL CG2 HG21 sing N N 504 VAL CG2 HG22 sing N N 505 VAL CG2 HG23 sing N N 506 VAL OXT HXT sing N N 507 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'methyl (2R)-2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]propanoate' 31O 3 'NONAETHYLENE GLYCOL' 2PE 4 'NICKEL (II) ION' NI 5 GLYCEROL GOL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DVV _pdbx_initial_refinement_model.details 'pdb entry 2DVV' #