data_4RD7 # _entry.id 4RD7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RD7 RCSB RCSB087199 WWPDB D_1000087199 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetTrack MCSG-APC109891 . unspecified TargetTrack NatPro-GO.121510 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RD7 _pdbx_database_status.recvd_initial_deposition_date 2014-09-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Gu, M.' 2 'Clancy, S.' 3 'Phillips Jr., G.N.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 'Enzyme Discovery for Natural Product Biosynthesis (NatPro)' 7 # _citation.id primary _citation.title 'The crystal structure of a Cupin 2 conserved barrel domain protein from Salinispora arenicola CNS-205' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Gu, M.' 2 primary 'Clancy, S.' 3 primary 'Phillips Jr., G.N.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 4RD7 _cell.length_a 43.687 _cell.length_b 43.687 _cell.length_c 132.811 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RD7 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cupin 2 conserved barrel domain protein' 14571.407 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)EIRPLDRANLRLDNNLRAQRL(MSE)PWPTVNAPFEGSWCVVAPGVSSGEHGHHEYEIWIA(MSE)TGRAEL VSDGARRPFHAGDVVYLPPGSRHQVVNPTDEQFQ(MSE)YAVWWDAA(MSE)VDRFATRHEADGHDG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMEIRPLDRANLRLDNNLRAQRLMPWPTVNAPFEGSWCVVAPGVSSGEHGHHEYEIWIAMTGRAELVSDGARRPFHAG DVVYLPPGSRHQVVNPTDEQFQMYAVWWDAAMVDRFATRHEADGHDG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 'MCSG-APC109891, NatPro-GO.121510' # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 GLU n 1 6 ILE n 1 7 ARG n 1 8 PRO n 1 9 LEU n 1 10 ASP n 1 11 ARG n 1 12 ALA n 1 13 ASN n 1 14 LEU n 1 15 ARG n 1 16 LEU n 1 17 ASP n 1 18 ASN n 1 19 ASN n 1 20 LEU n 1 21 ARG n 1 22 ALA n 1 23 GLN n 1 24 ARG n 1 25 LEU n 1 26 MSE n 1 27 PRO n 1 28 TRP n 1 29 PRO n 1 30 THR n 1 31 VAL n 1 32 ASN n 1 33 ALA n 1 34 PRO n 1 35 PHE n 1 36 GLU n 1 37 GLY n 1 38 SER n 1 39 TRP n 1 40 CYS n 1 41 VAL n 1 42 VAL n 1 43 ALA n 1 44 PRO n 1 45 GLY n 1 46 VAL n 1 47 SER n 1 48 SER n 1 49 GLY n 1 50 GLU n 1 51 HIS n 1 52 GLY n 1 53 HIS n 1 54 HIS n 1 55 GLU n 1 56 TYR n 1 57 GLU n 1 58 ILE n 1 59 TRP n 1 60 ILE n 1 61 ALA n 1 62 MSE n 1 63 THR n 1 64 GLY n 1 65 ARG n 1 66 ALA n 1 67 GLU n 1 68 LEU n 1 69 VAL n 1 70 SER n 1 71 ASP n 1 72 GLY n 1 73 ALA n 1 74 ARG n 1 75 ARG n 1 76 PRO n 1 77 PHE n 1 78 HIS n 1 79 ALA n 1 80 GLY n 1 81 ASP n 1 82 VAL n 1 83 VAL n 1 84 TYR n 1 85 LEU n 1 86 PRO n 1 87 PRO n 1 88 GLY n 1 89 SER n 1 90 ARG n 1 91 HIS n 1 92 GLN n 1 93 VAL n 1 94 VAL n 1 95 ASN n 1 96 PRO n 1 97 THR n 1 98 ASP n 1 99 GLU n 1 100 GLN n 1 101 PHE n 1 102 GLN n 1 103 MSE n 1 104 TYR n 1 105 ALA n 1 106 VAL n 1 107 TRP n 1 108 TRP n 1 109 ASP n 1 110 ALA n 1 111 ALA n 1 112 MSE n 1 113 VAL n 1 114 ASP n 1 115 ARG n 1 116 PHE n 1 117 ALA n 1 118 THR n 1 119 ARG n 1 120 HIS n 1 121 GLU n 1 122 ALA n 1 123 ASP n 1 124 GLY n 1 125 HIS n 1 126 ASP n 1 127 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Sare_2150 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CNS-205 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salinispora arenicola' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 391037 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pGrow7-K' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A8M0K5_SALAI _struct_ref.pdbx_db_accession A8M0K5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEIRPLDRANLRLDNNLRAQRLMPWPTVNAPFEGSWCVVAPGVSSGEHGHHEYEIWIAMTGRAELVSDGARRPFHAGDVV YLPPGSRHQVVNPTDEQFQMYAVWWDAAMVDRFATRHEADGHDG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RD7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A8M0K5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RD7 SER A 1 ? UNP A8M0K5 ? ? 'EXPRESSION TAG' -2 1 1 4RD7 ASN A 2 ? UNP A8M0K5 ? ? 'EXPRESSION TAG' -1 2 1 4RD7 ALA A 3 ? UNP A8M0K5 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RD7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 43.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '1.6M Ammonium Sulfate, 0.1M MES:NaOH, 10% (v/v) Dioxane, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2014-08-25 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97915 # _reflns.entry_id 4RD7 _reflns.observed_criterion_sigma_I -5 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 36.5 _reflns.d_resolution_high 1.57 _reflns.number_obs 18841 _reflns.number_all 18841 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.124 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 47.2 _reflns.B_iso_Wilson_estimate 13.76 _reflns.pdbx_redundancy 14.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.57 _reflns_shell.d_res_low 1.60 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.572 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 7.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 891 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RD7 _refine.ls_number_reflns_obs 18758 _refine.ls_number_reflns_all 18758 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.497 _refine.ls_d_res_high 1.571 _refine.ls_percent_reflns_obs 99.84 _refine.ls_R_factor_obs 0.1574 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1555 _refine.ls_R_factor_R_free 0.1938 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.85 _refine.ls_number_reflns_R_free 909 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.12 _refine.pdbx_overall_phase_error 18.81 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 924 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 1053 _refine_hist.d_res_high 1.571 _refine_hist.d_res_low 36.497 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 982 ? 'X-RAY DIFFRACTION' f_angle_d 1.105 ? ? 1346 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.744 ? ? 339 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.079 ? ? 137 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 174 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.5713 1.6698 2875 0.1335 99.00 0.2041 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.6698 1.7987 2888 0.1290 100.00 0.2097 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.7987 1.9797 2953 0.1213 100.00 0.1871 . . 150 . . . . 'X-RAY DIFFRACTION' . 1.9797 2.2661 2934 0.1278 100.00 0.1905 . . 161 . . . . 'X-RAY DIFFRACTION' . 2.2661 2.8549 3009 0.1661 100.00 0.2008 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.8549 36.5069 3190 0.1757 100.00 0.1900 . . 170 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4RD7 _struct.title 'The crystal structure of a Cupin 2 conserved barrel domain protein from Salinispora arenicola CNS-205' _struct.pdbx_descriptor 'Cupin 2 conserved barrel domain protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RD7 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text ;structural genomics, PSI-Biology, protein structure initiative, midwest center for structural genomics, MCSG, Enzyme Discovery for Natural Product Biosynthesis, NatPro, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? LEU A 14 ? ASP A 7 LEU A 11 5 ? 5 HELX_P HELX_P2 2 ASP A 109 ? ARG A 119 ? ASP A 106 ARG A 116 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A GLU 5 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A LEU 25 C ? ? ? 1_555 A MSE 26 N ? ? A LEU 22 A MSE 23 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 26 C ? ? ? 1_555 A PRO 27 N ? ? A MSE 23 A PRO 24 1_555 ? ? ? ? ? ? ? 1.346 ? covale5 covale ? ? A ALA 61 C ? ? ? 1_555 A MSE 62 N ? ? A ALA 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 62 C ? ? ? 1_555 A THR 63 N ? ? A MSE 59 A THR 60 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A GLN 102 C ? ? ? 1_555 A MSE 103 N ? ? A GLN 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 103 C ? ? ? 1_555 A TYR 104 N ? ? A MSE 100 A TYR 101 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale ? ? A ALA 111 C ? ? ? 1_555 A MSE 112 N ? ? A ALA 108 A MSE 109 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? A MSE 112 C ? ? ? 1_555 A VAL 113 N ? ? A MSE 109 A VAL 110 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MSE _struct_mon_prot_cis.label_seq_id 26 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MSE _struct_mon_prot_cis.auth_seq_id 23 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 27 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 24 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 15 ? ASP A 17 ? ARG A 12 ASP A 14 A 2 LEU A 20 ? ARG A 24 ? LEU A 17 ARG A 21 A 3 GLU A 36 ? VAL A 42 ? GLU A 33 VAL A 39 A 4 PHE A 101 ? TRP A 108 ? PHE A 98 TRP A 105 A 5 TYR A 56 ? THR A 63 ? TYR A 53 THR A 60 A 6 VAL A 82 ? LEU A 85 ? VAL A 79 LEU A 82 B 1 ALA A 73 ? HIS A 78 ? ALA A 70 HIS A 75 B 2 ARG A 65 ? SER A 70 ? ARG A 62 SER A 67 B 3 GLN A 92 ? VAL A 94 ? GLN A 89 VAL A 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 17 ? N ASP A 14 O LEU A 20 ? O LEU A 17 A 2 3 N ARG A 21 ? N ARG A 18 O VAL A 41 ? O VAL A 38 A 3 4 N VAL A 42 ? N VAL A 39 O PHE A 101 ? O PHE A 98 A 4 5 O TYR A 104 ? O TYR A 101 N ILE A 60 ? N ILE A 57 A 5 6 N GLU A 57 ? N GLU A 54 O LEU A 85 ? O LEU A 82 B 1 2 O ARG A 75 ? O ARG A 72 N LEU A 68 ? N LEU A 65 B 2 3 N VAL A 69 ? N VAL A 66 O GLN A 92 ? O GLN A 89 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 204' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 205' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LEU A 16 ? LEU A 13 . ? 1_555 ? 2 AC1 5 ARG A 21 ? ARG A 18 . ? 1_555 ? 3 AC1 5 ARG A 119 ? ARG A 116 . ? 8_675 ? 4 AC1 5 HOH H . ? HOH A 337 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH A 384 . ? 1_555 ? 6 AC2 5 THR A 30 ? THR A 27 . ? 4_564 ? 7 AC2 5 ARG A 75 ? ARG A 72 . ? 1_555 ? 8 AC2 5 PRO A 76 ? PRO A 73 . ? 1_555 ? 9 AC2 5 HOH H . ? HOH A 387 . ? 1_555 ? 10 AC2 5 HOH H . ? HOH A 391 . ? 1_555 ? 11 AC3 1 ARG A 24 ? ARG A 21 . ? 1_555 ? 12 AC4 2 ARG A 119 ? ARG A 116 . ? 1_555 ? 13 AC4 2 HIS A 120 ? HIS A 117 . ? 1_555 ? 14 AC5 3 ASN A 2 ? ASN A -1 . ? 4_564 ? 15 AC5 3 ARG A 65 ? ARG A 62 . ? 1_555 ? 16 AC5 3 HOH H . ? HOH A 378 . ? 1_555 ? 17 AC6 5 ASN A 18 ? ASN A 15 . ? 1_555 ? 18 AC6 5 GLU A 57 ? GLU A 54 . ? 1_555 ? 19 AC6 5 HOH H . ? HOH A 344 . ? 1_555 ? 20 AC6 5 HOH H . ? HOH A 350 . ? 1_555 ? 21 AC6 5 HOH H . ? HOH A 394 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RD7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RD7 _atom_sites.fract_transf_matrix[1][1] 0.022890 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022890 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007529 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 GLU 5 2 2 GLU GLU A . n A 1 6 ILE 6 3 3 ILE ILE A . n A 1 7 ARG 7 4 4 ARG ARG A . n A 1 8 PRO 8 5 5 PRO PRO A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 ASP 10 7 7 ASP ASP A . n A 1 11 ARG 11 8 8 ARG ARG A . n A 1 12 ALA 12 9 9 ALA ALA A . n A 1 13 ASN 13 10 10 ASN ASN A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 ARG 15 12 12 ARG ARG A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 ASN 18 15 15 ASN ASN A . n A 1 19 ASN 19 16 16 ASN ASN A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 ARG 21 18 18 ARG ARG A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 ARG 24 21 21 ARG ARG A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 MSE 26 23 23 MSE MSE A . n A 1 27 PRO 27 24 24 PRO PRO A . n A 1 28 TRP 28 25 25 TRP TRP A . n A 1 29 PRO 29 26 26 PRO PRO A . n A 1 30 THR 30 27 27 THR THR A . n A 1 31 VAL 31 28 28 VAL VAL A . n A 1 32 ASN 32 29 29 ASN ASN A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 PRO 34 31 31 PRO PRO A . n A 1 35 PHE 35 32 32 PHE PHE A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 SER 38 35 35 SER SER A . n A 1 39 TRP 39 36 36 TRP TRP A . n A 1 40 CYS 40 37 37 CYS CYS A . n A 1 41 VAL 41 38 38 VAL VAL A . n A 1 42 VAL 42 39 39 VAL VAL A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 PRO 44 41 41 PRO PRO A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 VAL 46 43 43 VAL VAL A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 SER 48 45 45 SER SER A . n A 1 49 GLY 49 46 46 GLY GLY A . n A 1 50 GLU 50 47 47 GLU GLU A . n A 1 51 HIS 51 48 48 HIS HIS A . n A 1 52 GLY 52 49 49 GLY GLY A . n A 1 53 HIS 53 50 50 HIS HIS A . n A 1 54 HIS 54 51 51 HIS HIS A . n A 1 55 GLU 55 52 52 GLU GLU A . n A 1 56 TYR 56 53 53 TYR TYR A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 ILE 58 55 55 ILE ILE A . n A 1 59 TRP 59 56 56 TRP TRP A . n A 1 60 ILE 60 57 57 ILE ILE A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 MSE 62 59 59 MSE MSE A . n A 1 63 THR 63 60 60 THR THR A . n A 1 64 GLY 64 61 61 GLY GLY A . n A 1 65 ARG 65 62 62 ARG ARG A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 VAL 69 66 66 VAL VAL A . n A 1 70 SER 70 67 67 SER SER A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 ALA 73 70 70 ALA ALA A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 ARG 75 72 72 ARG ARG A . n A 1 76 PRO 76 73 73 PRO PRO A . n A 1 77 PHE 77 74 74 PHE PHE A . n A 1 78 HIS 78 75 75 HIS HIS A . n A 1 79 ALA 79 76 76 ALA ALA A . n A 1 80 GLY 80 77 77 GLY GLY A . n A 1 81 ASP 81 78 78 ASP ASP A . n A 1 82 VAL 82 79 79 VAL VAL A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 TYR 84 81 81 TYR TYR A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 PRO 86 83 83 PRO PRO A . n A 1 87 PRO 87 84 84 PRO PRO A . n A 1 88 GLY 88 85 85 GLY GLY A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 ARG 90 87 87 ARG ARG A . n A 1 91 HIS 91 88 88 HIS HIS A . n A 1 92 GLN 92 89 89 GLN GLN A . n A 1 93 VAL 93 90 90 VAL VAL A . n A 1 94 VAL 94 91 91 VAL VAL A . n A 1 95 ASN 95 92 92 ASN ASN A . n A 1 96 PRO 96 93 93 PRO PRO A . n A 1 97 THR 97 94 94 THR THR A . n A 1 98 ASP 98 95 95 ASP ASP A . n A 1 99 GLU 99 96 96 GLU GLU A . n A 1 100 GLN 100 97 97 GLN GLN A . n A 1 101 PHE 101 98 98 PHE PHE A . n A 1 102 GLN 102 99 99 GLN GLN A . n A 1 103 MSE 103 100 100 MSE MSE A . n A 1 104 TYR 104 101 101 TYR TYR A . n A 1 105 ALA 105 102 102 ALA ALA A . n A 1 106 VAL 106 103 103 VAL VAL A . n A 1 107 TRP 107 104 104 TRP TRP A . n A 1 108 TRP 108 105 105 TRP TRP A . n A 1 109 ASP 109 106 106 ASP ASP A . n A 1 110 ALA 110 107 107 ALA ALA A . n A 1 111 ALA 111 108 108 ALA ALA A . n A 1 112 MSE 112 109 109 MSE MSE A . n A 1 113 VAL 113 110 110 VAL VAL A . n A 1 114 ASP 114 111 111 ASP ASP A . n A 1 115 ARG 115 112 112 ARG ARG A . n A 1 116 PHE 116 113 113 PHE PHE A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 THR 118 115 115 THR THR A . n A 1 119 ARG 119 116 116 ARG ARG A . n A 1 120 HIS 120 117 117 HIS HIS A . n A 1 121 GLU 121 118 ? ? ? A . n A 1 122 ALA 122 119 ? ? ? A . n A 1 123 ASP 123 120 ? ? ? A . n A 1 124 GLY 124 121 ? ? ? A . n A 1 125 HIS 125 122 ? ? ? A . n A 1 126 ASP 126 123 ? ? ? A . n A 1 127 GLY 127 124 ? ? ? A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'Midwest Center for Structural Genomics' MCSG 2 PSI:Biology 'Enzyme Discovery for Natural Product Biosynthesis' NatPro # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 1 SO4 SO4 A . C 2 SO4 1 202 2 SO4 SO4 A . D 2 SO4 1 203 3 SO4 SO4 A . E 2 SO4 1 204 4 SO4 SO4 A . F 2 SO4 1 205 5 SO4 SO4 A . G 3 GOL 1 206 1 GOL GOL A . H 4 HOH 1 301 1 HOH HOH A . H 4 HOH 2 302 2 HOH HOH A . H 4 HOH 3 303 3 HOH HOH A . H 4 HOH 4 304 4 HOH HOH A . H 4 HOH 5 305 5 HOH HOH A . H 4 HOH 6 306 6 HOH HOH A . H 4 HOH 7 307 7 HOH HOH A . H 4 HOH 8 308 8 HOH HOH A . H 4 HOH 9 309 9 HOH HOH A . H 4 HOH 10 310 10 HOH HOH A . H 4 HOH 11 311 11 HOH HOH A . H 4 HOH 12 312 12 HOH HOH A . H 4 HOH 13 313 13 HOH HOH A . H 4 HOH 14 314 14 HOH HOH A . H 4 HOH 15 315 15 HOH HOH A . H 4 HOH 16 316 16 HOH HOH A . H 4 HOH 17 317 17 HOH HOH A . H 4 HOH 18 318 18 HOH HOH A . H 4 HOH 19 319 19 HOH HOH A . H 4 HOH 20 320 20 HOH HOH A . H 4 HOH 21 321 21 HOH HOH A . H 4 HOH 22 322 22 HOH HOH A . H 4 HOH 23 323 23 HOH HOH A . H 4 HOH 24 324 24 HOH HOH A . H 4 HOH 25 325 25 HOH HOH A . H 4 HOH 26 326 26 HOH HOH A . H 4 HOH 27 327 27 HOH HOH A . H 4 HOH 28 328 28 HOH HOH A . H 4 HOH 29 329 29 HOH HOH A . H 4 HOH 30 330 30 HOH HOH A . H 4 HOH 31 331 31 HOH HOH A . H 4 HOH 32 332 32 HOH HOH A . H 4 HOH 33 333 33 HOH HOH A . H 4 HOH 34 334 34 HOH HOH A . H 4 HOH 35 335 35 HOH HOH A . H 4 HOH 36 336 36 HOH HOH A . H 4 HOH 37 337 37 HOH HOH A . H 4 HOH 38 338 38 HOH HOH A . H 4 HOH 39 339 39 HOH HOH A . H 4 HOH 40 340 40 HOH HOH A . H 4 HOH 41 341 41 HOH HOH A . H 4 HOH 42 342 42 HOH HOH A . H 4 HOH 43 343 43 HOH HOH A . H 4 HOH 44 344 44 HOH HOH A . H 4 HOH 45 345 45 HOH HOH A . H 4 HOH 46 346 46 HOH HOH A . H 4 HOH 47 347 47 HOH HOH A . H 4 HOH 48 348 48 HOH HOH A . H 4 HOH 49 349 49 HOH HOH A . H 4 HOH 50 350 50 HOH HOH A . H 4 HOH 51 351 51 HOH HOH A . H 4 HOH 52 352 52 HOH HOH A . H 4 HOH 53 353 53 HOH HOH A . H 4 HOH 54 354 54 HOH HOH A . H 4 HOH 55 355 55 HOH HOH A . H 4 HOH 56 356 56 HOH HOH A . H 4 HOH 57 357 57 HOH HOH A . H 4 HOH 58 358 58 HOH HOH A . H 4 HOH 59 359 59 HOH HOH A . H 4 HOH 60 360 60 HOH HOH A . H 4 HOH 61 361 61 HOH HOH A . H 4 HOH 62 362 62 HOH HOH A . H 4 HOH 63 363 63 HOH HOH A . H 4 HOH 64 364 64 HOH HOH A . H 4 HOH 65 365 65 HOH HOH A . H 4 HOH 66 366 66 HOH HOH A . H 4 HOH 67 367 67 HOH HOH A . H 4 HOH 68 368 68 HOH HOH A . H 4 HOH 69 369 69 HOH HOH A . H 4 HOH 70 370 70 HOH HOH A . H 4 HOH 71 371 71 HOH HOH A . H 4 HOH 72 372 72 HOH HOH A . H 4 HOH 73 373 73 HOH HOH A . H 4 HOH 74 374 74 HOH HOH A . H 4 HOH 75 375 75 HOH HOH A . H 4 HOH 76 376 76 HOH HOH A . H 4 HOH 77 377 77 HOH HOH A . H 4 HOH 78 378 78 HOH HOH A . H 4 HOH 79 379 79 HOH HOH A . H 4 HOH 80 380 80 HOH HOH A . H 4 HOH 81 381 81 HOH HOH A . H 4 HOH 82 382 82 HOH HOH A . H 4 HOH 83 383 83 HOH HOH A . H 4 HOH 84 384 84 HOH HOH A . H 4 HOH 85 385 85 HOH HOH A . H 4 HOH 86 386 86 HOH HOH A . H 4 HOH 87 387 87 HOH HOH A . H 4 HOH 88 388 88 HOH HOH A . H 4 HOH 89 389 89 HOH HOH A . H 4 HOH 90 390 90 HOH HOH A . H 4 HOH 91 391 91 HOH HOH A . H 4 HOH 92 392 92 HOH HOH A . H 4 HOH 93 393 93 HOH HOH A . H 4 HOH 94 394 94 HOH HOH A . H 4 HOH 95 395 95 HOH HOH A . H 4 HOH 96 396 96 HOH HOH A . H 4 HOH 97 397 97 HOH HOH A . H 4 HOH 98 398 98 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 26 A MSE 23 ? MET SELENOMETHIONINE 3 A MSE 62 A MSE 59 ? MET SELENOMETHIONINE 4 A MSE 103 A MSE 100 ? MET SELENOMETHIONINE 5 A MSE 112 A MSE 109 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5500 ? 1 MORE -122 ? 1 'SSA (A^2)' 11410 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 43.6870000000 -1.0000000000 0.0000000000 0.0000000000 43.6870000000 0.0000000000 0.0000000000 -1.0000000000 66.4055000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-01 2 'Structure model' 1 1 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD phasing Builder/HKL3000 ? 2 MLPHARE phasing Builder/HKL3000 ? 3 DM 'model building' Builder/HKL3000 ? 4 DENZO 'data reduction' Builder/HKL3000 ? 5 SCALEPACK 'data scaling' Builder/HKL3000 ? 6 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 DM phasing Builder/HKL3000 ? 10 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 27 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 84.40 _pdbx_validate_torsion.psi -15.57 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN -1 ? CG ? A ASN 2 CG 2 1 Y 1 A ASN -1 ? OD1 ? A ASN 2 OD1 3 1 Y 1 A ASN -1 ? ND2 ? A ASN 2 ND2 4 1 Y 1 A GLU 47 ? CD ? A GLU 50 CD 5 1 Y 1 A GLU 47 ? OE1 ? A GLU 50 OE1 6 1 Y 1 A GLU 47 ? OE2 ? A GLU 50 OE2 7 1 Y 1 A HIS 50 ? CG ? A HIS 53 CG 8 1 Y 1 A HIS 50 ? ND1 ? A HIS 53 ND1 9 1 Y 1 A HIS 50 ? CD2 ? A HIS 53 CD2 10 1 Y 1 A HIS 50 ? CE1 ? A HIS 53 CE1 11 1 Y 1 A HIS 50 ? NE2 ? A HIS 53 NE2 12 1 Y 1 A HIS 51 ? CG ? A HIS 54 CG 13 1 Y 1 A HIS 51 ? ND1 ? A HIS 54 ND1 14 1 Y 1 A HIS 51 ? CD2 ? A HIS 54 CD2 15 1 Y 1 A HIS 51 ? CE1 ? A HIS 54 CE1 16 1 Y 1 A HIS 51 ? NE2 ? A HIS 54 NE2 17 1 Y 1 A GLU 52 ? CD ? A GLU 55 CD 18 1 Y 1 A GLU 52 ? OE1 ? A GLU 55 OE1 19 1 Y 1 A GLU 52 ? OE2 ? A GLU 55 OE2 20 1 Y 1 A ARG 87 ? CG ? A ARG 90 CG 21 1 Y 1 A ARG 87 ? CD ? A ARG 90 CD 22 1 Y 1 A ARG 87 ? NE ? A ARG 90 NE 23 1 Y 1 A ARG 87 ? CZ ? A ARG 90 CZ 24 1 Y 1 A ARG 87 ? NH1 ? A ARG 90 NH1 25 1 Y 1 A ARG 87 ? NH2 ? A ARG 90 NH2 26 1 Y 1 A ARG 116 ? CG ? A ARG 119 CG 27 1 Y 1 A ARG 116 ? CD ? A ARG 119 CD 28 1 Y 1 A ARG 116 ? NE ? A ARG 119 NE 29 1 Y 1 A ARG 116 ? CZ ? A ARG 119 CZ 30 1 Y 1 A ARG 116 ? NH1 ? A ARG 119 NH1 31 1 Y 1 A ARG 116 ? NH2 ? A ARG 119 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A GLU 118 ? A GLU 121 3 1 Y 1 A ALA 119 ? A ALA 122 4 1 Y 1 A ASP 120 ? A ASP 123 5 1 Y 1 A GLY 121 ? A GLY 124 6 1 Y 1 A HIS 122 ? A HIS 125 7 1 Y 1 A ASP 123 ? A ASP 126 8 1 Y 1 A GLY 124 ? A GLY 127 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH #