data_4TRA # _entry.id 4TRA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4TRA pdb_00004tra 10.2210/pdb4tra/pdb RCSB TRNA09 ? ? WWPDB D_1000179437 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4TRA _pdbx_database_status.recvd_initial_deposition_date 1987-11-06 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Westhof, E.' 1 'Dumas, P.' 2 'Moras, D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals.' 'Acta Crystallogr.,Sect.A' 44 112 123 1988 ACACEQ DK 0108-7673 0621 ? 3272146 10.1107/S010876738700446X 1 'Hydration of Transfer RNA Molecules. A Crystallographic Study' Biochimie 70 145 ? 1988 BICMBE FR 0300-9084 0466 ? ? ? 2 'Crystal Structure of Yeast Phenylalanine T-RNA. I.Crystallographic Refinement' J.Mol.Biol. 123 607 ? 1978 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Crystal Structure of Yeast Phenylalanine T-RNA. II.Structural Features and Functional Implications' J.Mol.Biol. 123 631 ? 1978 JMOBAK UK 0022-2836 0070 ? ? ? 4 'Three Dimensional Structure of T-RNA and its Functional Implications' 'Adv.Enzymol.Relat.Areas Mol.Biol.' 46 279 ? 1978 AERAAD US 0065-258X 0917 ? ? ? 5 'The Three-Dimensional Structure of Transfer RNA' Sci.Am. 238 52 ? 1978 SCAMAC US 0036-8733 0420 ? ? ? 6 'Crystal Structure of Yeast Phenylalanine T-RNA, its Correlation to the Solution Structure and the Functional Implications' 'Transfer RNA' ? ? ? 1978 ? ? 0262-01056-9 0974 'Mit Press, Cambridge, Massachusetts' ? ? 7 'RNA-Ligand Interactions. (1) Magnesium Binding Sites in Yeast T-RNA-PHE' 'Nucleic Acids Res.' 4 2811 ? 1977 NARHAD UK 0305-1048 0389 ? ? ? 8 'Idealized Atomic Coordinates of Yeast Phenylalanine Transfer RNA' Biochem.Biophys.Res.Commun. 68 89 ? 1976 BBRCA9 US 0006-291X 0146 ? ? ? 9 'Three-dimensional Structure of a Transfer RNA in Two Crystal Forms' Science 192 853 ? 1976 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Westhof, E.' 1 ? primary 'Dumas, P.' 2 ? primary 'Moras, D.' 3 ? 1 'Westhof, E.' 4 ? 1 'Dumas, P.' 5 ? 1 'Moras, D.' 6 ? 2 'Sussman, J.L.' 7 ? 2 'Holbrook, S.R.' 8 ? 2 'Warrant, R.W.' 9 ? 2 'Church, G.M.' 10 ? 2 'Kim, S.-H.' 11 ? 3 'Holbrook, S.R.' 12 ? 3 'Sussman, J.L.' 13 ? 3 'Warrant, R.W.' 14 ? 3 'Kim, S.-H.' 15 ? 4 'Kim, S.-H.' 16 ? 5 'Rich, A.' 17 ? 5 'Kim, S.H.' 18 ? 6 'Kim, S.-H.' 19 ? 7 'Holbrook, S.R.' 20 ? 7 'Sussman, J.L.' 21 ? 7 'Warrant, R.W.' 22 ? 7 'Church, G.M.' 23 ? 7 'Kim, S.-H.' 24 ? 8 'Sussman, J.L.' 25 ? 8 'Kim, S.-H.' 26 ? 9 'Sussman, J.L.' 27 ? 9 'Kim, S.-H.' 28 ? # _cell.entry_id 4TRA _cell.length_a 33.000 _cell.length_b 56.000 _cell.length_c 161.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TRA _symmetry.space_group_name_H-M 'P 21 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat TRNAPHE 24890.121 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 water nat water 18.015 123 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGGAUUUA(2MG)CUCAG(H2U)(H2U)GGGAGAGC(M2G)CCAGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)UGGAG (7MG)UC(5MC)UGUG(5MU)(PSU)CG(1MA)UCCACAGAAUUCGCACCA ; _entity_poly.pdbx_seq_one_letter_code_can GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 U n 1 7 U n 1 8 U n 1 9 A n 1 10 2MG n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 H2U n 1 17 H2U n 1 18 G n 1 19 G n 1 20 G n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 M2G n 1 27 C n 1 28 C n 1 29 A n 1 30 G n 1 31 A n 1 32 OMC n 1 33 U n 1 34 OMG n 1 35 A n 1 36 A n 1 37 YG n 1 38 A n 1 39 PSU n 1 40 5MC n 1 41 U n 1 42 G n 1 43 G n 1 44 A n 1 45 G n 1 46 7MG n 1 47 U n 1 48 C n 1 49 5MC n 1 50 U n 1 51 G n 1 52 U n 1 53 G n 1 54 5MU n 1 55 PSU n 1 56 C n 1 57 G n 1 58 1MA n 1 59 U n 1 60 C n 1 61 C n 1 62 A n 1 63 C n 1 64 A n 1 65 G n 1 66 A n 1 67 A n 1 68 U n 1 69 U n 1 70 C n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 4TRA _struct_ref.pdbx_db_accession 4TRA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4TRA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4TRA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 2MG 'RNA linking' n "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 7MG 'RNA linking' n "7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H18 N5 O8 P' 379.263 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 HOH non-polymer . WATER ? 'H2 O' 18.015 M2G 'RNA linking' n "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C12 H18 N5 O8 P' 391.274 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 YG 'RNA linking' n WYBUTOSINE 'Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4,9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL-9-OXO-METHYL ESTER' 'C21 H29 N6 O12 P' 588.462 # _exptl.entry_id 4TRA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.99 _exptl_crystal.density_percent_sol 58.84 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _refine.entry_id 4TRA _refine.ls_number_reflns_obs 4508 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 3.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1720000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1652 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 123 _refine_hist.number_atoms_total 1779 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 4TRA _struct.title 'RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4TRA _struct_keywords.pdbx_keywords T-RNA _struct_keywords.text 'T-RNA, SINGLE STRAND, LOOPS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 9 "O3'" ? ? ? 1_555 A 2MG 10 P ? ? A A 9 A 2MG 10 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? A 2MG 10 "O3'" ? ? ? 1_555 A C 11 P ? ? A 2MG 10 A C 11 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale3 covale both ? A G 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? A G 15 A H2U 16 1_555 ? ? ? ? ? ? ? 1.630 ? ? covale4 covale both ? A H2U 16 "O3'" ? ? ? 1_555 A H2U 17 P ? ? A H2U 16 A H2U 17 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale5 covale both ? A H2U 17 "O3'" ? ? ? 1_555 A G 18 P ? ? A H2U 17 A G 18 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale6 covale both ? A C 25 "O3'" ? ? ? 1_555 A M2G 26 P ? ? A C 25 A M2G 26 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale7 covale both ? A M2G 26 "O3'" ? ? ? 1_555 A C 27 P ? ? A M2G 26 A C 27 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale8 covale both ? A A 31 "O3'" ? ? ? 1_555 A OMC 32 P ? ? A A 31 A OMC 32 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale9 covale both ? A OMC 32 "O3'" ? ? ? 1_555 A U 33 P ? ? A OMC 32 A U 33 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale10 covale both ? A U 33 "O3'" ? ? ? 1_555 A OMG 34 P ? ? A U 33 A OMG 34 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale11 covale both ? A OMG 34 "O3'" ? ? ? 1_555 A A 35 P ? ? A OMG 34 A A 35 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale12 covale both ? A A 36 "O3'" ? ? ? 1_555 A YG 37 P ? ? A A 36 A YG 37 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale13 covale both ? A YG 37 "O3'" ? ? ? 1_555 A A 38 P ? ? A YG 37 A A 38 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale14 covale both ? A A 38 "O3'" ? ? ? 1_555 A PSU 39 P ? ? A A 38 A PSU 39 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale15 covale both ? A PSU 39 "O3'" ? ? ? 1_555 A 5MC 40 P ? ? A PSU 39 A 5MC 40 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale16 covale both ? A 5MC 40 "O3'" ? ? ? 1_555 A U 41 P ? ? A 5MC 40 A U 41 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale17 covale both ? A G 45 "O3'" ? ? ? 1_555 A 7MG 46 P ? ? A G 45 A 7MG 46 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale18 covale both ? A 7MG 46 "O3'" ? ? ? 1_555 A U 47 P ? ? A 7MG 46 A U 47 1_555 ? ? ? ? ? ? ? 1.630 ? ? covale19 covale both ? A C 48 "O3'" ? ? ? 1_555 A 5MC 49 P ? ? A C 48 A 5MC 49 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale20 covale both ? A 5MC 49 "O3'" ? ? ? 1_555 A U 50 P ? ? A 5MC 49 A U 50 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale21 covale both ? A G 53 "O3'" ? ? ? 1_555 A 5MU 54 P ? ? A G 53 A 5MU 54 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale22 covale both ? A 5MU 54 "O3'" ? ? ? 1_555 A PSU 55 P ? ? A 5MU 54 A PSU 55 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale23 covale both ? A PSU 55 "O3'" ? ? ? 1_555 A C 56 P ? ? A PSU 55 A C 56 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale24 covale both ? A G 57 "O3'" ? ? ? 1_555 A 1MA 58 P ? ? A G 57 A 1MA 58 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale25 covale both ? A 1MA 58 "O3'" ? ? ? 1_555 A U 59 P ? ? A 1MA 58 A U 59 1_555 ? ? ? ? ? ? ? 1.597 ? ? metalc1 metalc ? ? A G 19 OP1 ? ? ? 1_555 B MG . MG ? ? A G 19 A MG 77 1_555 ? ? ? ? ? ? ? 2.424 ? ? metalc2 metalc ? ? A A 21 OP2 ? ? ? 1_555 C MG . MG ? ? A A 21 A MG 78 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 77 A HOH 185 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 77 A HOH 186 1_555 ? ? ? ? ? ? ? 2.007 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 77 A HOH 187 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 77 A HOH 188 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 77 A HOH 189 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 78 A HOH 190 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 78 A HOH 191 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 78 A HOH 192 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 79 A HOH 193 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 79 A HOH 194 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 79 A HOH 195 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 79 A HOH 196 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 79 A HOH 197 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 79 A HOH 198 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 80 A HOH 199 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 80 A HOH 200 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 80 A HOH 201 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 80 A HOH 202 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 80 A HOH 203 1_555 ? ? ? ? ? ? ? 2.002 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog19 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog22 hydrog ? ? A 2MG 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 2MG 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A 2MG 10 A G 45 1_555 ? ? ? ? ? ? '2MG-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 21 N3 ? ? A G 15 A A 21 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 48 O2 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 48 N3 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 A PSU 55 O4 ? ? A G 18 A PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 N7 ? ? ? 1_555 A 7MG 46 N1 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? A G 22 O6 ? ? ? 1_555 A 7MG 46 N2 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog43 hydrog ? ? A M2G 26 N1 ? ? ? 1_555 A A 44 N1 ? ? A M2G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? A M2G 26 O6 ? ? ? 1_555 A A 44 N6 ? ? A M2G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 30 N1 ? ? ? 1_555 A 5MC 40 N3 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 30 N2 ? ? ? 1_555 A 5MC 40 O2 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 30 O6 ? ? ? 1_555 A 5MC 40 N4 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 31 N1 ? ? ? 1_555 A PSU 39 N3 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog57 hydrog ? ? A A 31 N6 ? ? ? 1_555 A PSU 39 O2 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog58 hydrog ? ? A 5MC 49 N3 ? ? ? 1_555 A G 65 N1 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A 5MC 49 N4 ? ? ? 1_555 A G 65 O6 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A 5MC 49 O2 ? ? ? 1_555 A G 65 N2 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 52 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 52 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A 5MU 54 N3 ? ? ? 1_555 A 1MA 58 N7 ? ? A 5MU 54 A 1MA 58 1_555 ? ? ? ? ? ? '5MU-1MA PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 77 ? 6 'BINDING SITE FOR RESIDUE MG A 77' AC2 Software A MG 78 ? 5 'BINDING SITE FOR RESIDUE MG A 78' AC3 Software A MG 79 ? 8 'BINDING SITE FOR RESIDUE MG A 79' AC4 Software A MG 80 ? 7 'BINDING SITE FOR RESIDUE MG A 80' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G A 19 ? G A 19 . ? 1_555 ? 2 AC1 6 HOH F . ? HOH A 185 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 186 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 187 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 188 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 189 . ? 1_555 ? 7 AC2 5 G A 20 ? G A 20 . ? 1_555 ? 8 AC2 5 A A 21 ? A A 21 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH A 190 . ? 1_555 ? 10 AC2 5 HOH F . ? HOH A 191 . ? 1_555 ? 11 AC2 5 HOH F . ? HOH A 192 . ? 1_555 ? 12 AC3 8 U A 8 ? U A 8 . ? 1_555 ? 13 AC3 8 U A 12 ? U A 12 . ? 1_555 ? 14 AC3 8 HOH F . ? HOH A 193 . ? 1_555 ? 15 AC3 8 HOH F . ? HOH A 194 . ? 1_555 ? 16 AC3 8 HOH F . ? HOH A 195 . ? 1_555 ? 17 AC3 8 HOH F . ? HOH A 196 . ? 1_555 ? 18 AC3 8 HOH F . ? HOH A 197 . ? 1_555 ? 19 AC3 8 HOH F . ? HOH A 198 . ? 1_555 ? 20 AC4 7 YG A 37 ? YG A 37 . ? 1_555 ? 21 AC4 7 A A 38 ? A A 38 . ? 1_555 ? 22 AC4 7 HOH F . ? HOH A 199 . ? 1_555 ? 23 AC4 7 HOH F . ? HOH A 200 . ? 1_555 ? 24 AC4 7 HOH F . ? HOH A 201 . ? 1_555 ? 25 AC4 7 HOH F . ? HOH A 202 . ? 1_555 ? 26 AC4 7 HOH F . ? HOH A 203 . ? 1_555 ? # _database_PDB_matrix.entry_id 4TRA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx_vector[1] -1.412240 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx_vector[2] -0.612520 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[3] -3.634130 # _atom_sites.entry_id 4TRA _atom_sites.fract_transf_matrix[1][1] 0.030303 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017857 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006211 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 2MG 10 10 10 2MG 2MG A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 H2U 16 16 16 H2U H2U A . n A 1 17 H2U 17 17 17 H2U H2U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 M2G 26 26 26 M2G M2G A . n A 1 27 C 27 27 27 C C A . n A 1 28 C 28 28 28 C C A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 OMC 32 32 32 OMC OMC A . n A 1 33 U 33 33 33 U U A . n A 1 34 OMG 34 34 34 OMG OMG A . n A 1 35 A 35 35 35 A A A . n A 1 36 A 36 36 36 A A A . n A 1 37 YG 37 37 37 YG YG A . n A 1 38 A 38 38 38 A A A . n A 1 39 PSU 39 39 39 PSU PSU A . n A 1 40 5MC 40 40 40 5MC 5MC A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 A 44 44 44 A A A . n A 1 45 G 45 45 45 G G A . n A 1 46 7MG 46 46 46 7MG 7MG A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 5MC 49 49 49 5MC 5MC A . n A 1 50 U 50 50 50 U U A . n A 1 51 G 51 51 51 G G A . n A 1 52 U 52 52 52 U U A . n A 1 53 G 53 53 53 G G A . n A 1 54 5MU 54 54 54 5MU 5MU A . n A 1 55 PSU 55 55 55 PSU PSU A . n A 1 56 C 56 56 56 C C A . n A 1 57 G 57 57 57 G G A . n A 1 58 1MA 58 58 58 1MA 1MA A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 A 62 62 62 A A A . n A 1 63 C 63 63 63 C C A . n A 1 64 A 64 64 64 A A A . n A 1 65 G 65 65 65 G G A . n A 1 66 A 66 66 66 A A A . n A 1 67 A 67 67 67 A A A . n A 1 68 U 68 68 68 U U A . n A 1 69 U 69 69 69 U U A . n A 1 70 C 70 70 70 C C A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 A 73 73 73 A A A . n A 1 74 C 74 74 74 C C A . n A 1 75 C 75 75 75 C C A . n A 1 76 A 76 76 76 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 77 77 MG MO5 A . C 2 MG 1 78 78 MG MO3 A . D 2 MG 1 79 79 MG MO6 A . E 2 MG 1 80 80 MG MO5 A . F 3 HOH 1 81 81 HOH HOH A . F 3 HOH 2 82 82 HOH HOH A . F 3 HOH 3 83 83 HOH HOH A . F 3 HOH 4 84 84 HOH HOH A . F 3 HOH 5 85 85 HOH HOH A . F 3 HOH 6 86 86 HOH HOH A . F 3 HOH 7 87 87 HOH HOH A . F 3 HOH 8 88 88 HOH HOH A . F 3 HOH 9 89 89 HOH HOH A . F 3 HOH 10 90 90 HOH HOH A . F 3 HOH 11 91 91 HOH HOH A . F 3 HOH 12 92 92 HOH HOH A . F 3 HOH 13 93 93 HOH HOH A . F 3 HOH 14 94 94 HOH HOH A . F 3 HOH 15 95 95 HOH HOH A . F 3 HOH 16 96 96 HOH HOH A . F 3 HOH 17 97 97 HOH HOH A . F 3 HOH 18 98 98 HOH HOH A . F 3 HOH 19 99 99 HOH HOH A . F 3 HOH 20 100 100 HOH HOH A . F 3 HOH 21 101 101 HOH HOH A . F 3 HOH 22 102 102 HOH HOH A . F 3 HOH 23 103 103 HOH HOH A . F 3 HOH 24 104 104 HOH HOH A . F 3 HOH 25 105 105 HOH HOH A . F 3 HOH 26 106 106 HOH HOH A . F 3 HOH 27 107 107 HOH HOH A . F 3 HOH 28 108 108 HOH HOH A . F 3 HOH 29 109 109 HOH HOH A . F 3 HOH 30 110 110 HOH HOH A . F 3 HOH 31 111 111 HOH HOH A . F 3 HOH 32 112 112 HOH HOH A . F 3 HOH 33 113 113 HOH HOH A . F 3 HOH 34 114 114 HOH HOH A . F 3 HOH 35 115 115 HOH HOH A . F 3 HOH 36 116 116 HOH HOH A . F 3 HOH 37 117 117 HOH HOH A . F 3 HOH 38 118 118 HOH HOH A . F 3 HOH 39 119 119 HOH HOH A . F 3 HOH 40 120 120 HOH HOH A . F 3 HOH 41 121 121 HOH HOH A . F 3 HOH 42 122 122 HOH HOH A . F 3 HOH 43 123 123 HOH HOH A . F 3 HOH 44 124 124 HOH HOH A . F 3 HOH 45 125 125 HOH HOH A . F 3 HOH 46 126 126 HOH HOH A . F 3 HOH 47 127 127 HOH HOH A . F 3 HOH 48 128 128 HOH HOH A . F 3 HOH 49 129 129 HOH HOH A . F 3 HOH 50 130 130 HOH HOH A . F 3 HOH 51 131 131 HOH HOH A . F 3 HOH 52 132 132 HOH HOH A . F 3 HOH 53 133 133 HOH HOH A . F 3 HOH 54 134 134 HOH HOH A . F 3 HOH 55 135 135 HOH HOH A . F 3 HOH 56 136 136 HOH HOH A . F 3 HOH 57 137 137 HOH HOH A . F 3 HOH 58 138 138 HOH HOH A . F 3 HOH 59 139 139 HOH HOH A . F 3 HOH 60 140 140 HOH HOH A . F 3 HOH 61 141 141 HOH HOH A . F 3 HOH 62 142 142 HOH HOH A . F 3 HOH 63 143 143 HOH HOH A . F 3 HOH 64 144 144 HOH HOH A . F 3 HOH 65 145 145 HOH HOH A . F 3 HOH 66 146 146 HOH HOH A . F 3 HOH 67 147 147 HOH HOH A . F 3 HOH 68 148 148 HOH HOH A . F 3 HOH 69 149 149 HOH HOH A . F 3 HOH 70 150 150 HOH HOH A . F 3 HOH 71 151 151 HOH HOH A . F 3 HOH 72 152 152 HOH HOH A . F 3 HOH 73 153 153 HOH HOH A . F 3 HOH 74 154 154 HOH HOH A . F 3 HOH 75 155 155 HOH HOH A . F 3 HOH 76 156 156 HOH HOH A . F 3 HOH 77 157 157 HOH HOH A . F 3 HOH 78 158 158 HOH HOH A . F 3 HOH 79 159 159 HOH HOH A . F 3 HOH 80 160 160 HOH HOH A . F 3 HOH 81 161 161 HOH HOH A . F 3 HOH 82 162 162 HOH HOH A . F 3 HOH 83 163 163 HOH HOH A . F 3 HOH 84 164 164 HOH HOH A . F 3 HOH 85 165 165 HOH HOH A . F 3 HOH 86 166 166 HOH HOH A . F 3 HOH 87 167 167 HOH HOH A . F 3 HOH 88 168 168 HOH HOH A . F 3 HOH 89 169 169 HOH HOH A . F 3 HOH 90 170 170 HOH HOH A . F 3 HOH 91 171 171 HOH HOH A . F 3 HOH 92 172 172 HOH HOH A . F 3 HOH 93 173 173 HOH HOH A . F 3 HOH 94 174 174 HOH HOH A . F 3 HOH 95 175 175 HOH HOH A . F 3 HOH 96 176 176 HOH HOH A . F 3 HOH 97 177 177 HOH HOH A . F 3 HOH 98 178 178 HOH HOH A . F 3 HOH 99 179 179 HOH HOH A . F 3 HOH 100 180 180 HOH HOH A . F 3 HOH 101 181 181 HOH HOH A . F 3 HOH 102 182 182 HOH HOH A . F 3 HOH 103 183 183 HOH HOH A . F 3 HOH 104 184 184 HOH HOH A . F 3 HOH 105 185 77 HOH MO5 A . F 3 HOH 106 186 77 HOH MO5 A . F 3 HOH 107 187 77 HOH MO5 A . F 3 HOH 108 188 77 HOH MO5 A . F 3 HOH 109 189 77 HOH MO5 A . F 3 HOH 110 190 78 HOH MO3 A . F 3 HOH 111 191 78 HOH MO3 A . F 3 HOH 112 192 78 HOH MO3 A . F 3 HOH 113 193 79 HOH MO6 A . F 3 HOH 114 194 79 HOH MO6 A . F 3 HOH 115 195 79 HOH MO6 A . F 3 HOH 116 196 79 HOH MO6 A . F 3 HOH 117 197 79 HOH MO6 A . F 3 HOH 118 198 79 HOH MO6 A . F 3 HOH 119 199 80 HOH MO5 A . F 3 HOH 120 200 80 HOH MO5 A . F 3 HOH 121 201 80 HOH MO5 A . F 3 HOH 122 202 80 HOH MO5 A . F 3 HOH 123 203 80 HOH MO5 A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 2MG 10 A 2MG 10 ? G "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 2 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A H2U 17 A H2U 17 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A M2G 26 A M2G 26 ? G "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" 5 A OMC 32 A OMC 32 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 6 A OMG 34 A OMG 34 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 7 A YG 37 A YG 37 ? G WYBUTOSINE 8 A PSU 39 A PSU 39 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 9 A 5MC 40 A 5MC 40 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 10 A 7MG 46 A 7MG 46 ? G ? 11 A 5MC 49 A 5MC 49 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 12 A 5MU 54 A 5MU 54 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 13 A PSU 55 A PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 14 A 1MA 58 A 1MA 58 ? A ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 185 ? 1_555 80.5 ? 2 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 186 ? 1_555 102.0 ? 3 O ? F HOH . ? A HOH 185 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 186 ? 1_555 177.4 ? 4 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 187 ? 1_555 71.4 ? 5 O ? F HOH . ? A HOH 185 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 187 ? 1_555 90.6 ? 6 O ? F HOH . ? A HOH 186 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 187 ? 1_555 89.9 ? 7 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 188 ? 1_555 111.1 ? 8 O ? F HOH . ? A HOH 185 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 188 ? 1_555 90.1 ? 9 O ? F HOH . ? A HOH 186 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 188 ? 1_555 89.3 ? 10 O ? F HOH . ? A HOH 187 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 188 ? 1_555 177.5 ? 11 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 189 ? 1_555 157.0 ? 12 O ? F HOH . ? A HOH 185 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 189 ? 1_555 88.9 ? 13 O ? F HOH . ? A HOH 186 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 189 ? 1_555 88.6 ? 14 O ? F HOH . ? A HOH 187 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 189 ? 1_555 88.6 ? 15 O ? F HOH . ? A HOH 188 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? F HOH . ? A HOH 189 ? 1_555 89.1 ? 16 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? C MG . ? A MG 78 ? 1_555 O ? F HOH . ? A HOH 190 ? 1_555 81.2 ? 17 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? C MG . ? A MG 78 ? 1_555 O ? F HOH . ? A HOH 191 ? 1_555 94.7 ? 18 O ? F HOH . ? A HOH 190 ? 1_555 MG ? C MG . ? A MG 78 ? 1_555 O ? F HOH . ? A HOH 191 ? 1_555 88.1 ? 19 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? C MG . ? A MG 78 ? 1_555 O ? F HOH . ? A HOH 192 ? 1_555 169.3 ? 20 O ? F HOH . ? A HOH 190 ? 1_555 MG ? C MG . ? A MG 78 ? 1_555 O ? F HOH . ? A HOH 192 ? 1_555 88.8 ? 21 O ? F HOH . ? A HOH 191 ? 1_555 MG ? C MG . ? A MG 78 ? 1_555 O ? F HOH . ? A HOH 192 ? 1_555 88.8 ? 22 O ? F HOH . ? A HOH 193 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 194 ? 1_555 179.0 ? 23 O ? F HOH . ? A HOH 193 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 195 ? 1_555 90.5 ? 24 O ? F HOH . ? A HOH 194 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 195 ? 1_555 90.1 ? 25 O ? F HOH . ? A HOH 193 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 196 ? 1_555 90.2 ? 26 O ? F HOH . ? A HOH 194 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 196 ? 1_555 89.1 ? 27 O ? F HOH . ? A HOH 195 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 196 ? 1_555 179.1 ? 28 O ? F HOH . ? A HOH 193 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 197 ? 1_555 90.1 ? 29 O ? F HOH . ? A HOH 194 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 197 ? 1_555 89.2 ? 30 O ? F HOH . ? A HOH 195 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 197 ? 1_555 89.9 ? 31 O ? F HOH . ? A HOH 196 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 197 ? 1_555 89.5 ? 32 O ? F HOH . ? A HOH 193 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 198 ? 1_555 90.8 ? 33 O ? F HOH . ? A HOH 194 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 198 ? 1_555 89.9 ? 34 O ? F HOH . ? A HOH 195 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 198 ? 1_555 90.6 ? 35 O ? F HOH . ? A HOH 196 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 198 ? 1_555 90.0 ? 36 O ? F HOH . ? A HOH 197 ? 1_555 MG ? D MG . ? A MG 79 ? 1_555 O ? F HOH . ? A HOH 198 ? 1_555 179.0 ? 37 O ? F HOH . ? A HOH 199 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 200 ? 1_555 177.5 ? 38 O ? F HOH . ? A HOH 199 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 201 ? 1_555 90.0 ? 39 O ? F HOH . ? A HOH 200 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 201 ? 1_555 89.8 ? 40 O ? F HOH . ? A HOH 199 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 202 ? 1_555 90.5 ? 41 O ? F HOH . ? A HOH 200 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 202 ? 1_555 89.8 ? 42 O ? F HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 202 ? 1_555 179.5 ? 43 O ? F HOH . ? A HOH 199 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 203 ? 1_555 89.0 ? 44 O ? F HOH . ? A HOH 200 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 203 ? 1_555 88.5 ? 45 O ? F HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 203 ? 1_555 90.1 ? 46 O ? F HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? F HOH . ? A HOH 203 ? 1_555 89.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1987-11-06 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-09-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation ? 'Coordinates and associated ncs operations (if present) transformed into standard crystal frame' # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_sites 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' database_PDB_matrix 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' pdbx_validate_symm_contact 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 5 4 'Structure model' '_atom_sites.fract_transf_matrix[1][2]' 6 4 'Structure model' '_atom_sites.fract_transf_matrix[1][3]' 7 4 'Structure model' '_atom_sites.fract_transf_matrix[2][1]' 8 4 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 9 4 'Structure model' '_atom_sites.fract_transf_matrix[2][3]' 10 4 'Structure model' '_atom_sites.fract_transf_matrix[3][1]' 11 4 'Structure model' '_atom_sites.fract_transf_matrix[3][2]' 12 4 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 13 4 'Structure model' '_atom_sites.fract_transf_vector[1]' 14 4 'Structure model' '_atom_sites.fract_transf_vector[2]' 15 4 'Structure model' '_atom_sites.fract_transf_vector[3]' 16 4 'Structure model' '_database_2.pdbx_DOI' 17 4 'Structure model' '_database_2.pdbx_database_accession' 18 4 'Structure model' '_database_PDB_matrix.origx_vector[1]' 19 4 'Structure model' '_database_PDB_matrix.origx_vector[2]' 20 4 'Structure model' '_database_PDB_matrix.origx_vector[3]' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.value' 34 4 'Structure model' '_struct_conn.pdbx_dist_value' 35 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 36 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 41 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 42 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 48 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 49 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 50 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A C 70 ? ? O A HOH 86 ? ? 0.92 2 1 "C3'" A C 70 ? ? O A HOH 86 ? ? 1.07 3 1 "C2'" A C 70 ? ? O A HOH 86 ? ? 1.73 4 1 "O2'" A C 70 ? ? O A HOH 86 ? ? 1.86 5 1 "C4'" A C 70 ? ? O A HOH 86 ? ? 1.99 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O4 A H2U 17 ? ? 1_555 "O2'" A A 23 ? ? 3_555 1.31 2 1 C5 A H2U 17 ? ? 1_555 "O3'" A A 23 ? ? 3_555 1.63 3 1 C4 A H2U 17 ? ? 1_555 "O2'" A A 23 ? ? 3_555 1.68 4 1 C5 A H2U 17 ? ? 1_555 "C5'" A G 24 ? ? 3_555 1.87 5 1 O4 A H2U 17 ? ? 1_555 "O4'" A G 24 ? ? 3_555 2.03 6 1 O2 A C 75 ? ? 1_555 O A HOH 169 ? ? 3_465 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 19 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 19 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.470 _pdbx_validate_rmsd_bond.bond_target_value 1.526 _pdbx_validate_rmsd_bond.bond_deviation -0.056 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A G 1 ? ? C6 A G 1 ? ? N1 A G 1 ? ? 114.61 111.50 3.11 0.50 N 2 1 "O4'" A G 3 ? ? "C1'" A G 3 ? ? N9 A G 3 ? ? 113.02 108.50 4.52 0.70 N 3 1 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 114.68 117.70 -3.02 0.50 N 4 1 C2 A U 6 ? ? N3 A U 6 ? ? C4 A U 6 ? ? 122.10 127.00 -4.90 0.60 N 5 1 N3 A U 6 ? ? C4 A U 6 ? ? C5 A U 6 ? ? 119.69 114.60 5.09 0.60 N 6 1 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.37 108.50 4.87 0.70 N 7 1 C2 A U 7 ? ? N3 A U 7 ? ? C4 A U 7 ? ? 122.38 127.00 -4.62 0.60 N 8 1 N3 A U 7 ? ? C4 A U 7 ? ? C5 A U 7 ? ? 119.35 114.60 4.75 0.60 N 9 1 C5 A U 7 ? ? C4 A U 7 ? ? O4 A U 7 ? ? 121.75 125.90 -4.15 0.60 N 10 1 C2 A U 8 ? ? N3 A U 8 ? ? C4 A U 8 ? ? 122.76 127.00 -4.24 0.60 N 11 1 N3 A U 8 ? ? C4 A U 8 ? ? C5 A U 8 ? ? 119.21 114.60 4.61 0.60 N 12 1 "O5'" A A 9 ? ? "C5'" A A 9 ? ? "C4'" A A 9 ? ? 103.61 109.40 -5.79 0.80 N 13 1 "O4'" A A 9 ? ? "C1'" A A 9 ? ? N9 A A 9 ? ? 115.92 108.50 7.42 0.70 N 14 1 "C3'" A 2MG 10 ? ? "O3'" A 2MG 10 ? ? P A C 11 ? ? 130.60 119.70 10.90 1.20 Y 15 1 OP1 A C 11 ? ? P A C 11 ? ? OP2 A C 11 ? ? 109.82 119.60 -9.78 1.50 N 16 1 "O5'" A C 11 ? ? "C5'" A C 11 ? ? "C4'" A C 11 ? ? 102.99 109.40 -6.41 0.80 N 17 1 C2 A U 12 ? ? N3 A U 12 ? ? C4 A U 12 ? ? 122.42 127.00 -4.58 0.60 N 18 1 N3 A U 12 ? ? C4 A U 12 ? ? C5 A U 12 ? ? 119.12 114.60 4.52 0.60 N 19 1 "O5'" A A 14 ? ? P A A 14 ? ? OP2 A A 14 ? ? 118.34 110.70 7.64 1.20 N 20 1 "C3'" A A 14 ? ? "O3'" A A 14 ? ? P A G 15 ? ? 111.54 119.70 -8.16 1.20 Y 21 1 N9 A G 15 ? ? "C1'" A G 15 ? ? "C2'" A G 15 ? ? 105.19 112.00 -6.81 1.10 N 22 1 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 114.85 108.50 6.35 0.70 N 23 1 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 114.63 108.50 6.13 0.70 N 24 1 "C3'" A G 18 ? ? "O3'" A G 18 ? ? P A G 19 ? ? 135.40 119.70 15.70 1.20 Y 25 1 OP1 A G 19 ? ? P A G 19 ? ? OP2 A G 19 ? ? 109.03 119.60 -10.57 1.50 N 26 1 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 103.18 108.20 -5.02 0.80 N 27 1 C5 A G 19 ? ? C6 A G 19 ? ? N1 A G 19 ? ? 114.55 111.50 3.05 0.50 N 28 1 "O5'" A G 20 ? ? "C5'" A G 20 ? ? "C4'" A G 20 ? ? 103.61 109.40 -5.79 0.80 N 29 1 C5 A G 20 ? ? C6 A G 20 ? ? N1 A G 20 ? ? 114.65 111.50 3.15 0.50 N 30 1 N1 A A 21 ? ? C2 A A 21 ? ? N3 A A 21 ? ? 125.91 129.30 -3.39 0.50 N 31 1 "C3'" A A 21 ? ? "O3'" A A 21 ? ? P A G 22 ? ? 130.92 119.70 11.22 1.20 Y 32 1 C6 A A 23 ? ? N1 A A 23 ? ? C2 A A 23 ? ? 122.33 118.60 3.73 0.60 N 33 1 N1 A A 23 ? ? C2 A A 23 ? ? N3 A A 23 ? ? 125.82 129.30 -3.48 0.50 N 34 1 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 114.60 117.70 -3.10 0.50 N 35 1 "C3'" A G 24 ? ? "O3'" A G 24 ? ? P A C 25 ? ? 131.98 119.70 12.28 1.20 Y 36 1 N1 A A 29 ? ? C2 A A 29 ? ? N3 A A 29 ? ? 126.25 129.30 -3.05 0.50 N 37 1 C5 A G 30 ? ? C6 A G 30 ? ? N1 A G 30 ? ? 114.51 111.50 3.01 0.50 N 38 1 C2 A U 33 ? ? N3 A U 33 ? ? C4 A U 33 ? ? 122.42 127.00 -4.58 0.60 N 39 1 N3 A U 33 ? ? C4 A U 33 ? ? C5 A U 33 ? ? 119.83 114.60 5.23 0.60 N 40 1 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 115.05 108.50 6.55 0.70 N 41 1 N1 A A 35 ? ? C2 A A 35 ? ? N3 A A 35 ? ? 126.00 129.30 -3.30 0.50 N 42 1 "O4'" A A 36 ? ? "C1'" A A 36 ? ? N9 A A 36 ? ? 114.43 108.50 5.93 0.70 N 43 1 N1 A A 36 ? ? C2 A A 36 ? ? N3 A A 36 ? ? 125.69 129.30 -3.61 0.50 N 44 1 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 126.11 129.30 -3.19 0.50 N 45 1 "C3'" A PSU 39 ? ? "O3'" A PSU 39 ? ? P A 5MC 40 ? ? 127.86 119.70 8.16 1.20 Y 46 1 C2 A U 41 ? ? N3 A U 41 ? ? C4 A U 41 ? ? 122.20 127.00 -4.80 0.60 N 47 1 N3 A U 41 ? ? C4 A U 41 ? ? C5 A U 41 ? ? 119.95 114.60 5.35 0.60 N 48 1 "O4'" A G 42 ? ? "C1'" A G 42 ? ? N9 A G 42 ? ? 113.04 108.50 4.54 0.70 N 49 1 C5 A G 43 ? ? C6 A G 43 ? ? N1 A G 43 ? ? 114.64 111.50 3.14 0.50 N 50 1 OP1 A A 44 ? ? P A A 44 ? ? OP2 A A 44 ? ? 110.09 119.60 -9.51 1.50 N 51 1 N1 A A 44 ? ? C2 A A 44 ? ? N3 A A 44 ? ? 126.26 129.30 -3.04 0.50 N 52 1 C2 A U 47 ? ? N3 A U 47 ? ? C4 A U 47 ? ? 122.05 127.00 -4.95 0.60 N 53 1 N3 A U 47 ? ? C4 A U 47 ? ? C5 A U 47 ? ? 119.46 114.60 4.86 0.60 N 54 1 "O4'" A C 48 ? ? "C1'" A C 48 ? ? N1 A C 48 ? ? 113.69 108.50 5.19 0.70 N 55 1 C2 A U 50 ? ? N3 A U 50 ? ? C4 A U 50 ? ? 122.79 127.00 -4.21 0.60 N 56 1 N3 A U 50 ? ? C4 A U 50 ? ? C5 A U 50 ? ? 119.27 114.60 4.67 0.60 N 57 1 "C3'" A U 50 ? ? "O3'" A U 50 ? ? P A G 51 ? ? 129.58 119.70 9.88 1.20 Y 58 1 "C3'" A G 51 ? ? "O3'" A G 51 ? ? P A U 52 ? ? 127.98 119.70 8.28 1.20 Y 59 1 C2 A U 52 ? ? N3 A U 52 ? ? C4 A U 52 ? ? 122.41 127.00 -4.59 0.60 N 60 1 N3 A U 52 ? ? C4 A U 52 ? ? C5 A U 52 ? ? 118.85 114.60 4.25 0.60 N 61 1 "O5'" A C 56 ? ? "C5'" A C 56 ? ? "C4'" A C 56 ? ? 104.43 109.40 -4.97 0.80 N 62 1 C5 A G 57 ? ? C6 A G 57 ? ? N1 A G 57 ? ? 114.97 111.50 3.47 0.50 N 63 1 C2 A U 59 ? ? N3 A U 59 ? ? C4 A U 59 ? ? 122.14 127.00 -4.86 0.60 N 64 1 N3 A U 59 ? ? C4 A U 59 ? ? C5 A U 59 ? ? 119.21 114.60 4.61 0.60 N 65 1 "C3'" A U 59 ? ? "O3'" A U 59 ? ? P A C 60 ? ? 130.97 119.70 11.27 1.20 Y 66 1 N3 A C 61 ? ? C4 A C 61 ? ? C5 A C 61 ? ? 119.32 121.90 -2.58 0.40 N 67 1 "C3'" A C 61 ? ? "O3'" A C 61 ? ? P A A 62 ? ? 129.43 119.70 9.73 1.20 Y 68 1 "O5'" A A 62 ? ? "C5'" A A 62 ? ? "C4'" A A 62 ? ? 103.94 109.40 -5.46 0.80 N 69 1 N1 A A 62 ? ? C2 A A 62 ? ? N3 A A 62 ? ? 125.95 129.30 -3.35 0.50 N 70 1 "O4'" A C 63 ? ? "C1'" A C 63 ? ? N1 A C 63 ? ? 114.19 108.50 5.69 0.70 N 71 1 N1 A A 64 ? ? C2 A A 64 ? ? N3 A A 64 ? ? 126.10 129.30 -3.20 0.50 N 72 1 "C3'" A A 64 ? ? "O3'" A A 64 ? ? P A G 65 ? ? 107.60 119.70 -12.10 1.20 Y 73 1 "O4'" A G 65 ? ? "C1'" A G 65 ? ? N9 A G 65 ? ? 113.45 108.50 4.95 0.70 N 74 1 C5 A G 65 ? ? C6 A G 65 ? ? N1 A G 65 ? ? 114.63 111.50 3.13 0.50 N 75 1 "O4'" A A 67 ? ? "C1'" A A 67 ? ? N9 A A 67 ? ? 112.72 108.50 4.22 0.70 N 76 1 N1 A A 67 ? ? C2 A A 67 ? ? N3 A A 67 ? ? 125.57 129.30 -3.73 0.50 N 77 1 N1 A U 68 ? ? "C1'" A U 68 ? ? "C2'" A U 68 ? ? 104.67 112.00 -7.33 1.10 N 78 1 "O4'" A U 68 ? ? "C1'" A U 68 ? ? N1 A U 68 ? ? 114.67 108.50 6.17 0.70 N 79 1 C2 A U 68 ? ? N3 A U 68 ? ? C4 A U 68 ? ? 122.34 127.00 -4.66 0.60 N 80 1 N3 A U 68 ? ? C4 A U 68 ? ? C5 A U 68 ? ? 118.78 114.60 4.18 0.60 N 81 1 C2 A U 69 ? ? N3 A U 69 ? ? C4 A U 69 ? ? 123.08 127.00 -3.92 0.60 N 82 1 N3 A U 69 ? ? C4 A U 69 ? ? C5 A U 69 ? ? 118.72 114.60 4.12 0.60 N 83 1 "O4'" A C 74 ? ? "C1'" A C 74 ? ? N1 A C 74 ? ? 112.75 108.50 4.25 0.70 N 84 1 N3 A C 74 ? ? C4 A C 74 ? ? C5 A C 74 ? ? 119.33 121.90 -2.57 0.40 N 85 1 "C3'" A C 74 ? ? "O3'" A C 74 ? ? P A C 75 ? ? 130.42 119.70 10.72 1.20 Y 86 1 "O4'" A C 75 ? ? "C1'" A C 75 ? ? N1 A C 75 ? ? 113.28 108.50 4.78 0.70 N 87 1 N1 A A 76 ? ? C2 A A 76 ? ? N3 A A 76 ? ? 125.94 129.30 -3.36 0.50 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C15 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id YG _pdbx_validate_chiral.auth_seq_id 37 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1MA P P N N 1 1MA OP1 O N N 2 1MA OP2 O N N 3 1MA OP3 O N N 4 1MA "O5'" O N N 5 1MA "C5'" C N N 6 1MA "C4'" C N R 7 1MA "O4'" O N N 8 1MA "C3'" C N S 9 1MA "O3'" O N N 10 1MA "C2'" C N R 11 1MA "O2'" O N N 12 1MA "C1'" C N R 13 1MA N9 N Y N 14 1MA C8 C Y N 15 1MA N7 N Y N 16 1MA C5 C Y N 17 1MA C6 C N N 18 1MA N6 N N N 19 1MA N1 N N N 20 1MA CM1 C N N 21 1MA C2 C N N 22 1MA N3 N N N 23 1MA C4 C Y N 24 1MA HOP2 H N N 25 1MA HOP3 H N N 26 1MA "H5'" H N N 27 1MA "H5''" H N N 28 1MA "H4'" H N N 29 1MA "H3'" H N N 30 1MA "HO3'" H N N 31 1MA "H2'" H N N 32 1MA "HO2'" H N N 33 1MA "H1'" H N N 34 1MA H8 H N N 35 1MA HN61 H N N 36 1MA HM11 H N N 37 1MA HM12 H N N 38 1MA HM13 H N N 39 1MA H2 H N N 40 2MG P P N N 41 2MG OP1 O N N 42 2MG OP2 O N N 43 2MG OP3 O N N 44 2MG "O5'" O N N 45 2MG "C5'" C N N 46 2MG "C4'" C N R 47 2MG "O4'" O N N 48 2MG "C3'" C N S 49 2MG "O3'" O N N 50 2MG "C2'" C N R 51 2MG "O2'" O N N 52 2MG "C1'" C N R 53 2MG N9 N Y N 54 2MG C8 C Y N 55 2MG N7 N Y N 56 2MG C5 C Y N 57 2MG C6 C N N 58 2MG O6 O N N 59 2MG N1 N N N 60 2MG C2 C N N 61 2MG N2 N N N 62 2MG CM2 C N N 63 2MG N3 N N N 64 2MG C4 C Y N 65 2MG HOP2 H N N 66 2MG HOP3 H N N 67 2MG "H5'" H N N 68 2MG "H5''" H N N 69 2MG "H4'" H N N 70 2MG "H3'" H N N 71 2MG "HO3'" H N N 72 2MG "H2'" H N N 73 2MG "HO2'" H N N 74 2MG "H1'" H N N 75 2MG H8 H N N 76 2MG HN1 H N N 77 2MG HN2 H N N 78 2MG HM21 H N N 79 2MG HM22 H N N 80 2MG HM23 H N N 81 5MC P P N N 82 5MC OP1 O N N 83 5MC OP2 O N N 84 5MC OP3 O N N 85 5MC "O5'" O N N 86 5MC "C5'" C N N 87 5MC "C4'" C N R 88 5MC "O4'" O N N 89 5MC "C3'" C N S 90 5MC "O3'" O N N 91 5MC "C2'" C N R 92 5MC "O2'" O N N 93 5MC "C1'" C N R 94 5MC N1 N N N 95 5MC C2 C N N 96 5MC O2 O N N 97 5MC N3 N N N 98 5MC C4 C N N 99 5MC N4 N N N 100 5MC C5 C N N 101 5MC C6 C N N 102 5MC CM5 C N N 103 5MC HOP2 H N N 104 5MC HOP3 H N N 105 5MC "H5'" H N N 106 5MC "H5''" H N N 107 5MC "H4'" H N N 108 5MC "H3'" H N N 109 5MC "HO3'" H N N 110 5MC "H2'" H N N 111 5MC "HO2'" H N N 112 5MC "H1'" H N N 113 5MC HN41 H N N 114 5MC HN42 H N N 115 5MC H6 H N N 116 5MC HM51 H N N 117 5MC HM52 H N N 118 5MC HM53 H N N 119 5MU N1 N N N 120 5MU C2 C N N 121 5MU N3 N N N 122 5MU C4 C N N 123 5MU C5 C N N 124 5MU C5M C N N 125 5MU C6 C N N 126 5MU O2 O N N 127 5MU O4 O N N 128 5MU "C1'" C N R 129 5MU "C2'" C N R 130 5MU "O2'" O N N 131 5MU "C3'" C N S 132 5MU "C4'" C N R 133 5MU "O3'" O N N 134 5MU "O4'" O N N 135 5MU "C5'" C N N 136 5MU "O5'" O N N 137 5MU P P N N 138 5MU OP1 O N N 139 5MU OP2 O N N 140 5MU OP3 O N N 141 5MU HN3 H N N 142 5MU H71 H N N 143 5MU H72 H N N 144 5MU H73 H N N 145 5MU H6 H N N 146 5MU "H1'" H N N 147 5MU "H2'" H N N 148 5MU "HO2'" H N N 149 5MU "H3'" H N N 150 5MU "H4'" H N N 151 5MU "HO3'" H N N 152 5MU "H5'" H N N 153 5MU "H5''" H N N 154 5MU HOP2 H N N 155 5MU HOP3 H N N 156 7MG P P N N 157 7MG OP1 O N N 158 7MG OP2 O N N 159 7MG OP3 O N N 160 7MG "O5'" O N N 161 7MG "C5'" C N N 162 7MG "C4'" C N R 163 7MG "O4'" O N N 164 7MG "C3'" C N S 165 7MG "O3'" O N N 166 7MG "C2'" C N R 167 7MG "O2'" O N N 168 7MG "C1'" C N R 169 7MG N9 N N N 170 7MG C8 C N N 171 7MG N7 N N N 172 7MG C5 C N N 173 7MG C6 C N N 174 7MG O6 O N N 175 7MG N1 N N N 176 7MG C2 C N N 177 7MG N2 N N N 178 7MG N3 N N N 179 7MG C4 C N N 180 7MG CM7 C N N 181 7MG HOP2 H N N 182 7MG HOP3 H N N 183 7MG "H5'" H N N 184 7MG "H5''" H N N 185 7MG "H4'" H N N 186 7MG "H3'" H N N 187 7MG "HO3'" H N N 188 7MG "H2'" H N N 189 7MG "HO2'" H N N 190 7MG "H1'" H N N 191 7MG H81 H N N 192 7MG H82 H N N 193 7MG HN1 H N N 194 7MG HN21 H N N 195 7MG HN22 H N N 196 7MG HM71 H N N 197 7MG HM72 H N N 198 7MG HM73 H N N 199 A OP3 O N N 200 A P P N N 201 A OP1 O N N 202 A OP2 O N N 203 A "O5'" O N N 204 A "C5'" C N N 205 A "C4'" C N R 206 A "O4'" O N N 207 A "C3'" C N S 208 A "O3'" O N N 209 A "C2'" C N R 210 A "O2'" O N N 211 A "C1'" C N R 212 A N9 N Y N 213 A C8 C Y N 214 A N7 N Y N 215 A C5 C Y N 216 A C6 C Y N 217 A N6 N N N 218 A N1 N Y N 219 A C2 C Y N 220 A N3 N Y N 221 A C4 C Y N 222 A HOP3 H N N 223 A HOP2 H N N 224 A "H5'" H N N 225 A "H5''" H N N 226 A "H4'" H N N 227 A "H3'" H N N 228 A "HO3'" H N N 229 A "H2'" H N N 230 A "HO2'" H N N 231 A "H1'" H N N 232 A H8 H N N 233 A H61 H N N 234 A H62 H N N 235 A H2 H N N 236 C OP3 O N N 237 C P P N N 238 C OP1 O N N 239 C OP2 O N N 240 C "O5'" O N N 241 C "C5'" C N N 242 C "C4'" C N R 243 C "O4'" O N N 244 C "C3'" C N S 245 C "O3'" O N N 246 C "C2'" C N R 247 C "O2'" O N N 248 C "C1'" C N R 249 C N1 N N N 250 C C2 C N N 251 C O2 O N N 252 C N3 N N N 253 C C4 C N N 254 C N4 N N N 255 C C5 C N N 256 C C6 C N N 257 C HOP3 H N N 258 C HOP2 H N N 259 C "H5'" H N N 260 C "H5''" H N N 261 C "H4'" H N N 262 C "H3'" H N N 263 C "HO3'" H N N 264 C "H2'" H N N 265 C "HO2'" H N N 266 C "H1'" H N N 267 C H41 H N N 268 C H42 H N N 269 C H5 H N N 270 C H6 H N N 271 G OP3 O N N 272 G P P N N 273 G OP1 O N N 274 G OP2 O N N 275 G "O5'" O N N 276 G "C5'" C N N 277 G "C4'" C N R 278 G "O4'" O N N 279 G "C3'" C N S 280 G "O3'" O N N 281 G "C2'" C N R 282 G "O2'" O N N 283 G "C1'" C N R 284 G N9 N Y N 285 G C8 C Y N 286 G N7 N Y N 287 G C5 C Y N 288 G C6 C N N 289 G O6 O N N 290 G N1 N N N 291 G C2 C N N 292 G N2 N N N 293 G N3 N N N 294 G C4 C Y N 295 G HOP3 H N N 296 G HOP2 H N N 297 G "H5'" H N N 298 G "H5''" H N N 299 G "H4'" H N N 300 G "H3'" H N N 301 G "HO3'" H N N 302 G "H2'" H N N 303 G "HO2'" H N N 304 G "H1'" H N N 305 G H8 H N N 306 G H1 H N N 307 G H21 H N N 308 G H22 H N N 309 H2U P P N N 310 H2U OP1 O N N 311 H2U OP2 O N N 312 H2U OP3 O N N 313 H2U "O5'" O N N 314 H2U "C5'" C N N 315 H2U "C4'" C N R 316 H2U "O4'" O N N 317 H2U "C3'" C N S 318 H2U "O3'" O N N 319 H2U "C1'" C N R 320 H2U "C2'" C N R 321 H2U "O2'" O N N 322 H2U N1 N N N 323 H2U C2 C N N 324 H2U O2 O N N 325 H2U N3 N N N 326 H2U C4 C N N 327 H2U O4 O N N 328 H2U C5 C N N 329 H2U C6 C N N 330 H2U HOP2 H N N 331 H2U HOP3 H N N 332 H2U "H5'" H N N 333 H2U "H5''" H N N 334 H2U "H4'" H N N 335 H2U "H3'" H N N 336 H2U "HO3'" H N N 337 H2U "H1'" H N N 338 H2U "H2'" H N N 339 H2U "HO2'" H N N 340 H2U HN3 H N N 341 H2U H51 H N N 342 H2U H52 H N N 343 H2U H61 H N N 344 H2U H62 H N N 345 HOH O O N N 346 HOH H1 H N N 347 HOH H2 H N N 348 M2G P P N N 349 M2G OP1 O N N 350 M2G OP2 O N N 351 M2G OP3 O N N 352 M2G "O5'" O N N 353 M2G "C5'" C N N 354 M2G "C4'" C N R 355 M2G "O4'" O N N 356 M2G "C3'" C N S 357 M2G "O3'" O N N 358 M2G "C2'" C N R 359 M2G "O2'" O N N 360 M2G "C1'" C N R 361 M2G N9 N Y N 362 M2G C8 C Y N 363 M2G N7 N Y N 364 M2G C5 C Y N 365 M2G C6 C N N 366 M2G O6 O N N 367 M2G N1 N N N 368 M2G C2 C N N 369 M2G N2 N N N 370 M2G N3 N N N 371 M2G C4 C Y N 372 M2G CM1 C N N 373 M2G CM2 C N N 374 M2G HOP2 H N N 375 M2G HOP3 H N N 376 M2G "H5'" H N N 377 M2G "H5''" H N N 378 M2G "H4'" H N N 379 M2G "H3'" H N N 380 M2G "HO3'" H N N 381 M2G "H2'" H N N 382 M2G "HO2'" H N N 383 M2G "H1'" H N N 384 M2G H8 H N N 385 M2G HN1 H N N 386 M2G HM11 H N N 387 M2G HM12 H N N 388 M2G HM13 H N N 389 M2G HM21 H N N 390 M2G HM22 H N N 391 M2G HM23 H N N 392 MG MG MG N N 393 OMC N1 N N N 394 OMC C2 C N N 395 OMC N3 N N N 396 OMC C4 C N N 397 OMC C5 C N N 398 OMC C6 C N N 399 OMC O2 O N N 400 OMC N4 N N N 401 OMC "C1'" C N R 402 OMC "C2'" C N R 403 OMC "O2'" O N N 404 OMC CM2 C N N 405 OMC "C3'" C N R 406 OMC "C4'" C N R 407 OMC "O4'" O N N 408 OMC "O3'" O N N 409 OMC "C5'" C N N 410 OMC "O5'" O N N 411 OMC P P N N 412 OMC OP1 O N N 413 OMC OP2 O N N 414 OMC OP3 O N N 415 OMC H5 H N N 416 OMC H6 H N N 417 OMC HN41 H N N 418 OMC HN42 H N N 419 OMC "H1'" H N N 420 OMC "H2'" H N N 421 OMC HM21 H N N 422 OMC HM22 H N N 423 OMC HM23 H N N 424 OMC "H3'" H N N 425 OMC "H4'" H N N 426 OMC "HO3'" H N N 427 OMC "H5'" H N N 428 OMC "H5''" H N N 429 OMC HOP2 H N N 430 OMC HOP3 H N N 431 OMG P P N N 432 OMG OP1 O N N 433 OMG OP2 O N N 434 OMG OP3 O N N 435 OMG "O5'" O N N 436 OMG "C5'" C N N 437 OMG "C4'" C N R 438 OMG "O4'" O N N 439 OMG "C3'" C N R 440 OMG "O3'" O N N 441 OMG "C2'" C N R 442 OMG "O2'" O N N 443 OMG CM2 C N N 444 OMG "C1'" C N R 445 OMG N9 N Y N 446 OMG C8 C Y N 447 OMG N7 N Y N 448 OMG C5 C Y N 449 OMG C6 C N N 450 OMG O6 O N N 451 OMG N1 N N N 452 OMG C2 C N N 453 OMG N2 N N N 454 OMG N3 N N N 455 OMG C4 C Y N 456 OMG HOP2 H N N 457 OMG HOP3 H N N 458 OMG "H5'" H N N 459 OMG "H5''" H N N 460 OMG "H4'" H N N 461 OMG "H3'" H N N 462 OMG "HO3'" H N N 463 OMG "H2'" H N N 464 OMG HM21 H N N 465 OMG HM22 H N N 466 OMG HM23 H N N 467 OMG "H1'" H N N 468 OMG H8 H N N 469 OMG HN1 H N N 470 OMG HN21 H N N 471 OMG HN22 H N N 472 PSU N1 N N N 473 PSU C2 C N N 474 PSU N3 N N N 475 PSU C4 C N N 476 PSU C5 C N N 477 PSU C6 C N N 478 PSU O2 O N N 479 PSU O4 O N N 480 PSU "C1'" C N S 481 PSU "C2'" C N R 482 PSU "O2'" O N N 483 PSU "C3'" C N S 484 PSU "C4'" C N R 485 PSU "O3'" O N N 486 PSU "O4'" O N N 487 PSU "C5'" C N N 488 PSU "O5'" O N N 489 PSU P P N N 490 PSU OP1 O N N 491 PSU OP2 O N N 492 PSU OP3 O N N 493 PSU HN1 H N N 494 PSU HN3 H N N 495 PSU H6 H N N 496 PSU "H1'" H N N 497 PSU "H2'" H N N 498 PSU "HO2'" H N N 499 PSU "H3'" H N N 500 PSU "H4'" H N N 501 PSU "HO3'" H N N 502 PSU "H5'" H N N 503 PSU "H5''" H N N 504 PSU HOP2 H N N 505 PSU HOP3 H N N 506 U OP3 O N N 507 U P P N N 508 U OP1 O N N 509 U OP2 O N N 510 U "O5'" O N N 511 U "C5'" C N N 512 U "C4'" C N R 513 U "O4'" O N N 514 U "C3'" C N S 515 U "O3'" O N N 516 U "C2'" C N R 517 U "O2'" O N N 518 U "C1'" C N R 519 U N1 N N N 520 U C2 C N N 521 U O2 O N N 522 U N3 N N N 523 U C4 C N N 524 U O4 O N N 525 U C5 C N N 526 U C6 C N N 527 U HOP3 H N N 528 U HOP2 H N N 529 U "H5'" H N N 530 U "H5''" H N N 531 U "H4'" H N N 532 U "H3'" H N N 533 U "HO3'" H N N 534 U "H2'" H N N 535 U "HO2'" H N N 536 U "H1'" H N N 537 U H3 H N N 538 U H5 H N N 539 U H6 H N N 540 YG N1 N Y N 541 YG N2 N Y N 542 YG C2 C Y N 543 YG N3 N N N 544 YG C3 C N N 545 YG C4 C Y N 546 YG C5 C Y N 547 YG C6 C N N 548 YG O6 O N N 549 YG N7 N Y N 550 YG C8 C Y N 551 YG N9 N Y N 552 YG C10 C N N 553 YG C11 C Y N 554 YG C12 C Y N 555 YG C13 C N N 556 YG C14 C N N 557 YG C15 C N R 558 YG C16 C N N 559 YG O17 O N N 560 YG O18 O N N 561 YG C19 C N N 562 YG N20 N N N 563 YG C21 C N N 564 YG O22 O N N 565 YG O23 O N N 566 YG C24 C N N 567 YG "C1'" C N R 568 YG "C2'" C N R 569 YG "O2'" O N N 570 YG "C3'" C N S 571 YG "O3'" O N N 572 YG "C4'" C N R 573 YG "O4'" O N N 574 YG "C5'" C N N 575 YG "O5'" O N N 576 YG P P N N 577 YG OP1 O N N 578 YG OP2 O N N 579 YG OP3 O N N 580 YG H31 H N N 581 YG H32 H N N 582 YG H33 H N N 583 YG H8 H N N 584 YG H101 H N N 585 YG H102 H N N 586 YG H103 H N N 587 YG H131 H N N 588 YG H132 H N N 589 YG H141 H N N 590 YG H142 H N N 591 YG H15 H N N 592 YG H191 H N N 593 YG H192 H N N 594 YG H193 H N N 595 YG HN2 H N N 596 YG H241 H N N 597 YG H242 H N N 598 YG H243 H N N 599 YG "H1'" H N N 600 YG "H2'" H N N 601 YG "HO2'" H N N 602 YG "H3'" H N N 603 YG "HO3'" H N N 604 YG "H4'" H N N 605 YG "H5'" H N N 606 YG "H5''" H N N 607 YG HOP2 H N N 608 YG HOP3 H N N 609 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MA P OP1 doub N N 1 1MA P OP2 sing N N 2 1MA P OP3 sing N N 3 1MA P "O5'" sing N N 4 1MA OP2 HOP2 sing N N 5 1MA OP3 HOP3 sing N N 6 1MA "O5'" "C5'" sing N N 7 1MA "C5'" "C4'" sing N N 8 1MA "C5'" "H5'" sing N N 9 1MA "C5'" "H5''" sing N N 10 1MA "C4'" "O4'" sing N N 11 1MA "C4'" "C3'" sing N N 12 1MA "C4'" "H4'" sing N N 13 1MA "O4'" "C1'" sing N N 14 1MA "C3'" "O3'" sing N N 15 1MA "C3'" "C2'" sing N N 16 1MA "C3'" "H3'" sing N N 17 1MA "O3'" "HO3'" sing N N 18 1MA "C2'" "O2'" sing N N 19 1MA "C2'" "C1'" sing N N 20 1MA "C2'" "H2'" sing N N 21 1MA "O2'" "HO2'" sing N N 22 1MA "C1'" N9 sing N N 23 1MA "C1'" "H1'" sing N N 24 1MA N9 C8 sing Y N 25 1MA N9 C4 sing Y N 26 1MA C8 N7 doub Y N 27 1MA C8 H8 sing N N 28 1MA N7 C5 sing Y N 29 1MA C5 C6 sing N N 30 1MA C5 C4 doub Y N 31 1MA C6 N6 doub N N 32 1MA C6 N1 sing N N 33 1MA N6 HN61 sing N N 34 1MA N1 CM1 sing N N 35 1MA N1 C2 sing N N 36 1MA CM1 HM11 sing N N 37 1MA CM1 HM12 sing N N 38 1MA CM1 HM13 sing N N 39 1MA C2 N3 doub N N 40 1MA C2 H2 sing N N 41 1MA N3 C4 sing N N 42 2MG P OP1 doub N N 43 2MG P OP2 sing N N 44 2MG P OP3 sing N N 45 2MG P "O5'" sing N N 46 2MG OP2 HOP2 sing N N 47 2MG OP3 HOP3 sing N N 48 2MG "O5'" "C5'" sing N N 49 2MG "C5'" "C4'" sing N N 50 2MG "C5'" "H5'" sing N N 51 2MG "C5'" "H5''" sing N N 52 2MG "C4'" "O4'" sing N N 53 2MG "C4'" "C3'" sing N N 54 2MG "C4'" "H4'" sing N N 55 2MG "O4'" "C1'" sing N N 56 2MG "C3'" "O3'" sing N N 57 2MG "C3'" "C2'" sing N N 58 2MG "C3'" "H3'" sing N N 59 2MG "O3'" "HO3'" sing N N 60 2MG "C2'" "O2'" sing N N 61 2MG "C2'" "C1'" sing N N 62 2MG "C2'" "H2'" sing N N 63 2MG "O2'" "HO2'" sing N N 64 2MG "C1'" N9 sing N N 65 2MG "C1'" "H1'" sing N N 66 2MG N9 C8 sing Y N 67 2MG N9 C4 sing Y N 68 2MG C8 N7 doub Y N 69 2MG C8 H8 sing N N 70 2MG N7 C5 sing Y N 71 2MG C5 C6 sing N N 72 2MG C5 C4 doub Y N 73 2MG C6 O6 doub N N 74 2MG C6 N1 sing N N 75 2MG N1 C2 sing N N 76 2MG N1 HN1 sing N N 77 2MG C2 N2 sing N N 78 2MG C2 N3 doub N N 79 2MG N2 CM2 sing N N 80 2MG N2 HN2 sing N N 81 2MG CM2 HM21 sing N N 82 2MG CM2 HM22 sing N N 83 2MG CM2 HM23 sing N N 84 2MG N3 C4 sing N N 85 5MC P OP1 doub N N 86 5MC P OP2 sing N N 87 5MC P OP3 sing N N 88 5MC P "O5'" sing N N 89 5MC OP2 HOP2 sing N N 90 5MC OP3 HOP3 sing N N 91 5MC "O5'" "C5'" sing N N 92 5MC "C5'" "C4'" sing N N 93 5MC "C5'" "H5'" sing N N 94 5MC "C5'" "H5''" sing N N 95 5MC "C4'" "O4'" sing N N 96 5MC "C4'" "C3'" sing N N 97 5MC "C4'" "H4'" sing N N 98 5MC "O4'" "C1'" sing N N 99 5MC "C3'" "O3'" sing N N 100 5MC "C3'" "C2'" sing N N 101 5MC "C3'" "H3'" sing N N 102 5MC "O3'" "HO3'" sing N N 103 5MC "C2'" "O2'" sing N N 104 5MC "C2'" "C1'" sing N N 105 5MC "C2'" "H2'" sing N N 106 5MC "O2'" "HO2'" sing N N 107 5MC "C1'" N1 sing N N 108 5MC "C1'" "H1'" sing N N 109 5MC N1 C2 sing N N 110 5MC N1 C6 sing N N 111 5MC C2 O2 doub N N 112 5MC C2 N3 sing N N 113 5MC N3 C4 doub N N 114 5MC C4 N4 sing N N 115 5MC C4 C5 sing N N 116 5MC N4 HN41 sing N N 117 5MC N4 HN42 sing N N 118 5MC C5 C6 doub N N 119 5MC C5 CM5 sing N N 120 5MC C6 H6 sing N N 121 5MC CM5 HM51 sing N N 122 5MC CM5 HM52 sing N N 123 5MC CM5 HM53 sing N N 124 5MU N1 C2 sing N N 125 5MU N1 C6 sing N N 126 5MU N1 "C1'" sing N N 127 5MU C2 N3 sing N N 128 5MU C2 O2 doub N N 129 5MU N3 C4 sing N N 130 5MU N3 HN3 sing N N 131 5MU C4 C5 sing N N 132 5MU C4 O4 doub N N 133 5MU C5 C5M sing N N 134 5MU C5 C6 doub N N 135 5MU C5M H71 sing N N 136 5MU C5M H72 sing N N 137 5MU C5M H73 sing N N 138 5MU C6 H6 sing N N 139 5MU "C1'" "C2'" sing N N 140 5MU "C1'" "O4'" sing N N 141 5MU "C1'" "H1'" sing N N 142 5MU "C2'" "O2'" sing N N 143 5MU "C2'" "C3'" sing N N 144 5MU "C2'" "H2'" sing N N 145 5MU "O2'" "HO2'" sing N N 146 5MU "C3'" "C4'" sing N N 147 5MU "C3'" "O3'" sing N N 148 5MU "C3'" "H3'" sing N N 149 5MU "C4'" "O4'" sing N N 150 5MU "C4'" "C5'" sing N N 151 5MU "C4'" "H4'" sing N N 152 5MU "O3'" "HO3'" sing N N 153 5MU "C5'" "O5'" sing N N 154 5MU "C5'" "H5'" sing N N 155 5MU "C5'" "H5''" sing N N 156 5MU "O5'" P sing N N 157 5MU P OP1 doub N N 158 5MU P OP2 sing N N 159 5MU P OP3 sing N N 160 5MU OP2 HOP2 sing N N 161 5MU OP3 HOP3 sing N N 162 7MG P OP1 doub N N 163 7MG P OP2 sing N N 164 7MG P OP3 sing N N 165 7MG P "O5'" sing N N 166 7MG OP2 HOP2 sing N N 167 7MG OP3 HOP3 sing N N 168 7MG "O5'" "C5'" sing N N 169 7MG "C5'" "C4'" sing N N 170 7MG "C5'" "H5'" sing N N 171 7MG "C5'" "H5''" sing N N 172 7MG "C4'" "O4'" sing N N 173 7MG "C4'" "C3'" sing N N 174 7MG "C4'" "H4'" sing N N 175 7MG "O4'" "C1'" sing N N 176 7MG "C3'" "O3'" sing N N 177 7MG "C3'" "C2'" sing N N 178 7MG "C3'" "H3'" sing N N 179 7MG "O3'" "HO3'" sing N N 180 7MG "C2'" "O2'" sing N N 181 7MG "C2'" "C1'" sing N N 182 7MG "C2'" "H2'" sing N N 183 7MG "O2'" "HO2'" sing N N 184 7MG "C1'" N9 sing N N 185 7MG "C1'" "H1'" sing N N 186 7MG N9 C8 sing N N 187 7MG N9 C4 sing N N 188 7MG C8 N7 sing N N 189 7MG C8 H81 sing N N 190 7MG C8 H82 sing N N 191 7MG N7 C5 sing N N 192 7MG N7 CM7 sing N N 193 7MG C5 C6 sing N N 194 7MG C5 C4 doub N N 195 7MG C6 O6 doub N N 196 7MG C6 N1 sing N N 197 7MG N1 C2 sing N N 198 7MG N1 HN1 sing N N 199 7MG C2 N2 sing N N 200 7MG C2 N3 doub N N 201 7MG N2 HN21 sing N N 202 7MG N2 HN22 sing N N 203 7MG N3 C4 sing N N 204 7MG CM7 HM71 sing N N 205 7MG CM7 HM72 sing N N 206 7MG CM7 HM73 sing N N 207 A OP3 P sing N N 208 A OP3 HOP3 sing N N 209 A P OP1 doub N N 210 A P OP2 sing N N 211 A P "O5'" sing N N 212 A OP2 HOP2 sing N N 213 A "O5'" "C5'" sing N N 214 A "C5'" "C4'" sing N N 215 A "C5'" "H5'" sing N N 216 A "C5'" "H5''" sing N N 217 A "C4'" "O4'" sing N N 218 A "C4'" "C3'" sing N N 219 A "C4'" "H4'" sing N N 220 A "O4'" "C1'" sing N N 221 A "C3'" "O3'" sing N N 222 A "C3'" "C2'" sing N N 223 A "C3'" "H3'" sing N N 224 A "O3'" "HO3'" sing N N 225 A "C2'" "O2'" sing N N 226 A "C2'" "C1'" sing N N 227 A "C2'" "H2'" sing N N 228 A "O2'" "HO2'" sing N N 229 A "C1'" N9 sing N N 230 A "C1'" "H1'" sing N N 231 A N9 C8 sing Y N 232 A N9 C4 sing Y N 233 A C8 N7 doub Y N 234 A C8 H8 sing N N 235 A N7 C5 sing Y N 236 A C5 C6 sing Y N 237 A C5 C4 doub Y N 238 A C6 N6 sing N N 239 A C6 N1 doub Y N 240 A N6 H61 sing N N 241 A N6 H62 sing N N 242 A N1 C2 sing Y N 243 A C2 N3 doub Y N 244 A C2 H2 sing N N 245 A N3 C4 sing Y N 246 C OP3 P sing N N 247 C OP3 HOP3 sing N N 248 C P OP1 doub N N 249 C P OP2 sing N N 250 C P "O5'" sing N N 251 C OP2 HOP2 sing N N 252 C "O5'" "C5'" sing N N 253 C "C5'" "C4'" sing N N 254 C "C5'" "H5'" sing N N 255 C "C5'" "H5''" sing N N 256 C "C4'" "O4'" sing N N 257 C "C4'" "C3'" sing N N 258 C "C4'" "H4'" sing N N 259 C "O4'" "C1'" sing N N 260 C "C3'" "O3'" sing N N 261 C "C3'" "C2'" sing N N 262 C "C3'" "H3'" sing N N 263 C "O3'" "HO3'" sing N N 264 C "C2'" "O2'" sing N N 265 C "C2'" "C1'" sing N N 266 C "C2'" "H2'" sing N N 267 C "O2'" "HO2'" sing N N 268 C "C1'" N1 sing N N 269 C "C1'" "H1'" sing N N 270 C N1 C2 sing N N 271 C N1 C6 sing N N 272 C C2 O2 doub N N 273 C C2 N3 sing N N 274 C N3 C4 doub N N 275 C C4 N4 sing N N 276 C C4 C5 sing N N 277 C N4 H41 sing N N 278 C N4 H42 sing N N 279 C C5 C6 doub N N 280 C C5 H5 sing N N 281 C C6 H6 sing N N 282 G OP3 P sing N N 283 G OP3 HOP3 sing N N 284 G P OP1 doub N N 285 G P OP2 sing N N 286 G P "O5'" sing N N 287 G OP2 HOP2 sing N N 288 G "O5'" "C5'" sing N N 289 G "C5'" "C4'" sing N N 290 G "C5'" "H5'" sing N N 291 G "C5'" "H5''" sing N N 292 G "C4'" "O4'" sing N N 293 G "C4'" "C3'" sing N N 294 G "C4'" "H4'" sing N N 295 G "O4'" "C1'" sing N N 296 G "C3'" "O3'" sing N N 297 G "C3'" "C2'" sing N N 298 G "C3'" "H3'" sing N N 299 G "O3'" "HO3'" sing N N 300 G "C2'" "O2'" sing N N 301 G "C2'" "C1'" sing N N 302 G "C2'" "H2'" sing N N 303 G "O2'" "HO2'" sing N N 304 G "C1'" N9 sing N N 305 G "C1'" "H1'" sing N N 306 G N9 C8 sing Y N 307 G N9 C4 sing Y N 308 G C8 N7 doub Y N 309 G C8 H8 sing N N 310 G N7 C5 sing Y N 311 G C5 C6 sing N N 312 G C5 C4 doub Y N 313 G C6 O6 doub N N 314 G C6 N1 sing N N 315 G N1 C2 sing N N 316 G N1 H1 sing N N 317 G C2 N2 sing N N 318 G C2 N3 doub N N 319 G N2 H21 sing N N 320 G N2 H22 sing N N 321 G N3 C4 sing N N 322 H2U P OP1 doub N N 323 H2U P OP2 sing N N 324 H2U P OP3 sing N N 325 H2U P "O5'" sing N N 326 H2U OP2 HOP2 sing N N 327 H2U OP3 HOP3 sing N N 328 H2U "O5'" "C5'" sing N N 329 H2U "C5'" "C4'" sing N N 330 H2U "C5'" "H5'" sing N N 331 H2U "C5'" "H5''" sing N N 332 H2U "C4'" "O4'" sing N N 333 H2U "C4'" "C3'" sing N N 334 H2U "C4'" "H4'" sing N N 335 H2U "O4'" "C1'" sing N N 336 H2U "C3'" "O3'" sing N N 337 H2U "C3'" "C2'" sing N N 338 H2U "C3'" "H3'" sing N N 339 H2U "O3'" "HO3'" sing N N 340 H2U "C1'" "C2'" sing N N 341 H2U "C1'" N1 sing N N 342 H2U "C1'" "H1'" sing N N 343 H2U "C2'" "O2'" sing N N 344 H2U "C2'" "H2'" sing N N 345 H2U "O2'" "HO2'" sing N N 346 H2U N1 C2 sing N N 347 H2U N1 C6 sing N N 348 H2U C2 O2 doub N N 349 H2U C2 N3 sing N N 350 H2U N3 C4 sing N N 351 H2U N3 HN3 sing N N 352 H2U C4 O4 doub N N 353 H2U C4 C5 sing N N 354 H2U C5 C6 sing N N 355 H2U C5 H51 sing N N 356 H2U C5 H52 sing N N 357 H2U C6 H61 sing N N 358 H2U C6 H62 sing N N 359 HOH O H1 sing N N 360 HOH O H2 sing N N 361 M2G P OP1 doub N N 362 M2G P OP2 sing N N 363 M2G P OP3 sing N N 364 M2G P "O5'" sing N N 365 M2G OP2 HOP2 sing N N 366 M2G OP3 HOP3 sing N N 367 M2G "O5'" "C5'" sing N N 368 M2G "C5'" "C4'" sing N N 369 M2G "C5'" "H5'" sing N N 370 M2G "C5'" "H5''" sing N N 371 M2G "C4'" "O4'" sing N N 372 M2G "C4'" "C3'" sing N N 373 M2G "C4'" "H4'" sing N N 374 M2G "O4'" "C1'" sing N N 375 M2G "C3'" "O3'" sing N N 376 M2G "C3'" "C2'" sing N N 377 M2G "C3'" "H3'" sing N N 378 M2G "O3'" "HO3'" sing N N 379 M2G "C2'" "O2'" sing N N 380 M2G "C2'" "C1'" sing N N 381 M2G "C2'" "H2'" sing N N 382 M2G "O2'" "HO2'" sing N N 383 M2G "C1'" N9 sing N N 384 M2G "C1'" "H1'" sing N N 385 M2G N9 C8 sing Y N 386 M2G N9 C4 sing Y N 387 M2G C8 N7 doub Y N 388 M2G C8 H8 sing N N 389 M2G N7 C5 sing Y N 390 M2G C5 C6 sing N N 391 M2G C5 C4 doub Y N 392 M2G C6 O6 doub N N 393 M2G C6 N1 sing N N 394 M2G N1 C2 sing N N 395 M2G N1 HN1 sing N N 396 M2G C2 N2 sing N N 397 M2G C2 N3 doub N N 398 M2G N2 CM1 sing N N 399 M2G N2 CM2 sing N N 400 M2G N3 C4 sing N N 401 M2G CM1 HM11 sing N N 402 M2G CM1 HM12 sing N N 403 M2G CM1 HM13 sing N N 404 M2G CM2 HM21 sing N N 405 M2G CM2 HM22 sing N N 406 M2G CM2 HM23 sing N N 407 OMC N1 C2 sing N N 408 OMC N1 C6 sing N N 409 OMC N1 "C1'" sing N N 410 OMC C2 N3 sing N N 411 OMC C2 O2 doub N N 412 OMC N3 C4 doub N N 413 OMC C4 C5 sing N N 414 OMC C4 N4 sing N N 415 OMC C5 C6 doub N N 416 OMC C5 H5 sing N N 417 OMC C6 H6 sing N N 418 OMC N4 HN41 sing N N 419 OMC N4 HN42 sing N N 420 OMC "C1'" "C2'" sing N N 421 OMC "C1'" "O4'" sing N N 422 OMC "C1'" "H1'" sing N N 423 OMC "C2'" "O2'" sing N N 424 OMC "C2'" "C3'" sing N N 425 OMC "C2'" "H2'" sing N N 426 OMC "O2'" CM2 sing N N 427 OMC CM2 HM21 sing N N 428 OMC CM2 HM22 sing N N 429 OMC CM2 HM23 sing N N 430 OMC "C3'" "C4'" sing N N 431 OMC "C3'" "O3'" sing N N 432 OMC "C3'" "H3'" sing N N 433 OMC "C4'" "O4'" sing N N 434 OMC "C4'" "C5'" sing N N 435 OMC "C4'" "H4'" sing N N 436 OMC "O3'" "HO3'" sing N N 437 OMC "C5'" "O5'" sing N N 438 OMC "C5'" "H5'" sing N N 439 OMC "C5'" "H5''" sing N N 440 OMC "O5'" P sing N N 441 OMC P OP1 doub N N 442 OMC P OP2 sing N N 443 OMC P OP3 sing N N 444 OMC OP2 HOP2 sing N N 445 OMC OP3 HOP3 sing N N 446 OMG P OP1 doub N N 447 OMG P OP2 sing N N 448 OMG P OP3 sing N N 449 OMG P "O5'" sing N N 450 OMG OP2 HOP2 sing N N 451 OMG OP3 HOP3 sing N N 452 OMG "O5'" "C5'" sing N N 453 OMG "C5'" "C4'" sing N N 454 OMG "C5'" "H5'" sing N N 455 OMG "C5'" "H5''" sing N N 456 OMG "C4'" "O4'" sing N N 457 OMG "C4'" "C3'" sing N N 458 OMG "C4'" "H4'" sing N N 459 OMG "O4'" "C1'" sing N N 460 OMG "C3'" "O3'" sing N N 461 OMG "C3'" "C2'" sing N N 462 OMG "C3'" "H3'" sing N N 463 OMG "O3'" "HO3'" sing N N 464 OMG "C2'" "O2'" sing N N 465 OMG "C2'" "C1'" sing N N 466 OMG "C2'" "H2'" sing N N 467 OMG "O2'" CM2 sing N N 468 OMG CM2 HM21 sing N N 469 OMG CM2 HM22 sing N N 470 OMG CM2 HM23 sing N N 471 OMG "C1'" N9 sing N N 472 OMG "C1'" "H1'" sing N N 473 OMG N9 C8 sing Y N 474 OMG N9 C4 sing Y N 475 OMG C8 N7 doub Y N 476 OMG C8 H8 sing N N 477 OMG N7 C5 sing Y N 478 OMG C5 C6 sing N N 479 OMG C5 C4 doub Y N 480 OMG C6 O6 doub N N 481 OMG C6 N1 sing N N 482 OMG N1 C2 sing N N 483 OMG N1 HN1 sing N N 484 OMG C2 N2 sing N N 485 OMG C2 N3 doub N N 486 OMG N2 HN21 sing N N 487 OMG N2 HN22 sing N N 488 OMG N3 C4 sing N N 489 PSU N1 C2 sing N N 490 PSU N1 C6 sing N N 491 PSU N1 HN1 sing N N 492 PSU C2 N3 sing N N 493 PSU C2 O2 doub N N 494 PSU N3 C4 sing N N 495 PSU N3 HN3 sing N N 496 PSU C4 C5 sing N N 497 PSU C4 O4 doub N N 498 PSU C5 C6 doub N N 499 PSU C5 "C1'" sing N N 500 PSU C6 H6 sing N N 501 PSU "C1'" "C2'" sing N N 502 PSU "C1'" "O4'" sing N N 503 PSU "C1'" "H1'" sing N N 504 PSU "C2'" "O2'" sing N N 505 PSU "C2'" "C3'" sing N N 506 PSU "C2'" "H2'" sing N N 507 PSU "O2'" "HO2'" sing N N 508 PSU "C3'" "C4'" sing N N 509 PSU "C3'" "O3'" sing N N 510 PSU "C3'" "H3'" sing N N 511 PSU "C4'" "O4'" sing N N 512 PSU "C4'" "C5'" sing N N 513 PSU "C4'" "H4'" sing N N 514 PSU "O3'" "HO3'" sing N N 515 PSU "C5'" "O5'" sing N N 516 PSU "C5'" "H5'" sing N N 517 PSU "C5'" "H5''" sing N N 518 PSU "O5'" P sing N N 519 PSU P OP1 doub N N 520 PSU P OP2 sing N N 521 PSU P OP3 sing N N 522 PSU OP2 HOP2 sing N N 523 PSU OP3 HOP3 sing N N 524 U OP3 P sing N N 525 U OP3 HOP3 sing N N 526 U P OP1 doub N N 527 U P OP2 sing N N 528 U P "O5'" sing N N 529 U OP2 HOP2 sing N N 530 U "O5'" "C5'" sing N N 531 U "C5'" "C4'" sing N N 532 U "C5'" "H5'" sing N N 533 U "C5'" "H5''" sing N N 534 U "C4'" "O4'" sing N N 535 U "C4'" "C3'" sing N N 536 U "C4'" "H4'" sing N N 537 U "O4'" "C1'" sing N N 538 U "C3'" "O3'" sing N N 539 U "C3'" "C2'" sing N N 540 U "C3'" "H3'" sing N N 541 U "O3'" "HO3'" sing N N 542 U "C2'" "O2'" sing N N 543 U "C2'" "C1'" sing N N 544 U "C2'" "H2'" sing N N 545 U "O2'" "HO2'" sing N N 546 U "C1'" N1 sing N N 547 U "C1'" "H1'" sing N N 548 U N1 C2 sing N N 549 U N1 C6 sing N N 550 U C2 O2 doub N N 551 U C2 N3 sing N N 552 U N3 C4 sing N N 553 U N3 H3 sing N N 554 U C4 O4 doub N N 555 U C4 C5 sing N N 556 U C5 C6 doub N N 557 U C5 H5 sing N N 558 U C6 H6 sing N N 559 YG N1 C2 sing Y N 560 YG N1 C6 sing N N 561 YG N1 C12 sing Y N 562 YG N2 C2 doub Y N 563 YG N2 C11 sing Y N 564 YG C2 N3 sing N N 565 YG N3 C3 sing N N 566 YG N3 C4 sing N N 567 YG C3 H31 sing N N 568 YG C3 H32 sing N N 569 YG C3 H33 sing N N 570 YG C4 C5 doub Y N 571 YG C4 N9 sing Y N 572 YG C5 C6 sing N N 573 YG C5 N7 sing Y N 574 YG C6 O6 doub N N 575 YG N7 C8 doub Y N 576 YG C8 N9 sing Y N 577 YG C8 H8 sing N N 578 YG N9 "C1'" sing N N 579 YG C10 C11 sing N N 580 YG C10 H101 sing N N 581 YG C10 H102 sing N N 582 YG C10 H103 sing N N 583 YG C11 C12 doub Y N 584 YG C12 C13 sing N N 585 YG C13 C14 sing N N 586 YG C13 H131 sing N N 587 YG C13 H132 sing N N 588 YG C14 C15 sing N N 589 YG C14 H141 sing N N 590 YG C14 H142 sing N N 591 YG C15 C16 sing N N 592 YG C15 N20 sing N N 593 YG C15 H15 sing N N 594 YG C16 O17 doub N N 595 YG C16 O18 sing N N 596 YG O18 C19 sing N N 597 YG C19 H191 sing N N 598 YG C19 H192 sing N N 599 YG C19 H193 sing N N 600 YG N20 C21 sing N N 601 YG N20 HN2 sing N N 602 YG C21 O22 doub N N 603 YG C21 O23 sing N N 604 YG O23 C24 sing N N 605 YG C24 H241 sing N N 606 YG C24 H242 sing N N 607 YG C24 H243 sing N N 608 YG "C1'" "C2'" sing N N 609 YG "C1'" "O4'" sing N N 610 YG "C1'" "H1'" sing N N 611 YG "C2'" "O2'" sing N N 612 YG "C2'" "C3'" sing N N 613 YG "C2'" "H2'" sing N N 614 YG "O2'" "HO2'" sing N N 615 YG "C3'" "O3'" sing N N 616 YG "C3'" "C4'" sing N N 617 YG "C3'" "H3'" sing N N 618 YG "O3'" "HO3'" sing N N 619 YG "C4'" "O4'" sing N N 620 YG "C4'" "C5'" sing N N 621 YG "C4'" "H4'" sing N N 622 YG "C5'" "O5'" sing N N 623 YG "C5'" "H5'" sing N N 624 YG "C5'" "H5''" sing N N 625 YG "O5'" P sing N N 626 YG P OP1 doub N N 627 YG P OP2 sing N N 628 YG P OP3 sing N N 629 YG OP2 HOP2 sing N N 630 YG OP3 HOP3 sing N N 631 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4TRA 'double helix' 4TRA 'a-form double helix' 4TRA 'parallel strands' 4TRA 'hairpin loop' 4TRA 'mismatched base pair' 4TRA 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 -1.070 -0.733 0.206 17.079 -10.092 -3.154 1 A_G1:C72_A A 1 ? A 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 -1.443 -0.195 0.125 2.802 1.755 -10.462 2 A_C2:G71_A A 2 ? A 71 ? 19 1 1 A G 3 1_555 A C 70 1_555 -1.031 -0.690 0.181 -1.951 -24.710 -6.256 3 A_G3:C70_A A 3 ? A 70 ? 19 1 1 A G 4 1_555 A U 69 1_555 -3.008 -0.996 0.171 1.033 -17.779 -4.597 4 A_G4:U69_A A 4 ? A 69 ? 28 ? 1 A A 5 1_555 A U 68 1_555 -0.219 -0.160 0.445 5.229 -26.737 -6.390 5 A_A5:U68_A A 5 ? A 68 ? 20 1 1 A U 6 1_555 A A 67 1_555 0.015 -0.316 1.029 -16.277 -13.909 3.107 6 A_U6:A67_A A 6 ? A 67 ? 20 1 1 A U 7 1_555 A A 66 1_555 0.109 -0.109 0.043 -4.523 -3.666 -2.912 7 A_U7:A66_A A 7 ? A 66 ? 20 1 1 A 5MC 49 1_555 A G 65 1_555 -0.343 -0.244 0.259 4.955 -15.637 -9.326 8 A_5MC49:G65_A A 49 ? A 65 ? 19 1 1 A U 50 1_555 A A 64 1_555 0.169 -0.272 -0.026 6.686 -4.460 3.087 9 A_U50:A64_A A 50 ? A 64 ? 20 1 1 A G 51 1_555 A C 63 1_555 -0.239 -0.247 -0.563 -0.314 -17.472 6.128 10 A_G51:C63_A A 51 ? A 63 ? 19 1 1 A U 52 1_555 A A 62 1_555 0.070 -0.203 0.387 2.000 -8.506 0.247 11 A_U52:A62_A A 52 ? A 62 ? 20 1 1 A G 53 1_555 A C 61 1_555 -0.592 0.038 -0.291 -8.466 -3.933 2.643 12 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A 5MU 54 1_555 A 1MA 58 1_555 4.567 -1.574 -0.044 -1.442 10.956 -108.302 13 A_5MU54:1MA58_A A 54 ? A 58 ? ? ? 1 A PSU 55 1_555 A G 18 1_555 1.121 -5.488 0.891 19.219 7.922 -82.547 14 A_PSU55:G18_A A 55 ? A 18 ? ? ? 1 A PSU 39 1_555 A A 31 1_555 -1.008 -0.067 0.944 9.954 -5.870 -2.804 15 A_PSU39:A31_A A 39 ? A 31 ? 21 1 1 A 5MC 40 1_555 A G 30 1_555 0.514 -0.475 0.214 7.078 -17.173 -2.402 16 A_5MC40:G30_A A 40 ? A 30 ? 19 1 1 A U 41 1_555 A A 29 1_555 0.112 0.055 -0.737 -0.884 -7.979 -12.496 17 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A G 42 1_555 A C 28 1_555 0.217 -0.150 0.154 -2.225 -7.984 -4.985 18 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A G 43 1_555 A C 27 1_555 0.170 -0.259 0.172 -4.835 -14.162 -3.269 19 A_G43:C27_A A 43 ? A 27 ? 19 1 1 A A 44 1_555 A M2G 26 1_555 -0.484 1.473 -0.568 -23.912 -28.551 -20.991 20 A_A44:M2G26_A A 44 ? A 26 ? 8 ? 1 A 2MG 10 1_555 A C 25 1_555 -0.158 -0.322 -0.278 -5.008 -0.388 -9.374 21 A_2MG10:C25_A A 10 ? A 25 ? 19 1 1 A C 11 1_555 A G 24 1_555 -0.401 -0.155 0.143 2.383 -1.619 -3.314 22 A_C11:G24_A A 11 ? A 24 ? 19 1 1 A U 12 1_555 A A 23 1_555 0.190 -0.076 0.036 -0.263 -9.300 -3.373 23 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A C 13 1_555 A G 22 1_555 0.559 0.008 -0.246 9.774 -3.530 -1.309 24 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A U 8 1_555 -4.081 -1.975 1.463 0.596 19.047 -99.899 25 A_A14:U8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 48 1_555 0.138 3.464 -0.273 7.319 -1.365 155.195 26 A_G15:C48_A A 15 ? A 48 ? 22 2 1 A G 19 1_555 A C 56 1_555 0.069 -0.369 -0.204 23.646 -23.935 3.386 27 A_G19:C56_A A 19 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 -0.217 -1.690 3.565 -5.663 12.696 25.876 -6.036 -0.773 2.476 26.091 11.638 29.317 1 AA_G1C2:G71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A C 2 1_555 A G 71 1_555 A G 3 1_555 A C 70 1_555 0.256 -1.914 3.223 0.730 6.834 36.274 -3.888 -0.312 2.833 10.857 -1.160 36.898 2 AA_C2G3:C70G71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A G 3 1_555 A C 70 1_555 A G 4 1_555 A U 69 1_555 0.541 -1.758 3.153 -4.933 11.353 25.050 -5.917 -2.108 2.038 24.366 10.588 27.897 3 AA_G3G4:U69C70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A G 4 1_555 A U 69 1_555 A A 5 1_555 A U 68 1_555 -0.186 -1.305 3.085 -4.605 3.465 44.881 -1.985 -0.141 2.985 4.517 6.002 45.231 4 AA_G4A5:U68U69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A A 5 1_555 A U 68 1_555 A U 6 1_555 A A 67 1_555 0.239 -1.875 3.788 -5.099 8.295 33.973 -4.428 -1.215 3.188 13.847 8.511 35.301 5 AA_A5U6:A67U68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A U 6 1_555 A A 67 1_555 A U 7 1_555 A A 66 1_555 -0.533 -1.528 2.817 4.993 7.965 32.792 -3.616 1.542 2.290 13.760 -8.626 34.077 6 AA_U6U7:A66A67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A U 7 1_555 A A 66 1_555 A 5MC 49 1_555 A G 65 1_555 -0.356 -2.210 3.106 0.603 0.974 33.828 -3.944 0.703 3.037 1.673 -1.036 33.846 7 AA_U75MC49:G65A66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A 5MC 49 1_555 A G 65 1_555 A U 50 1_555 A A 64 1_555 -0.193 -1.952 3.169 -2.197 5.007 30.885 -4.483 -0.025 2.832 9.310 4.085 31.354 8 AA_5MC49U50:A64G65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A U 50 1_555 A A 64 1_555 A G 51 1_555 A C 63 1_555 0.035 -1.310 3.448 6.482 12.049 30.796 -4.205 0.984 2.713 21.413 -11.519 33.631 9 AA_U50G51:C63A64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A G 51 1_555 A C 63 1_555 A U 52 1_555 A A 62 1_555 -0.309 -1.094 3.452 -10.751 3.255 31.737 -2.455 -1.324 3.257 5.732 18.933 33.618 10 AA_G51U52:A62C63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A U 52 1_555 A A 62 1_555 A G 53 1_555 A C 61 1_555 0.870 -1.619 3.429 7.264 1.707 29.194 -3.489 -0.090 3.442 3.319 -14.121 30.113 11 AA_U52G53:C61A62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 53 1_555 A C 61 1_555 A 5MU 54 1_555 A 1MA 58 1_555 -2.375 -2.990 3.320 5.609 -2.141 93.219 -2.015 1.736 3.259 -1.472 -3.856 93.367 12 AA_G535MU54:1MA58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A 5MU 54 1_555 A 1MA 58 1_555 A PSU 55 1_555 A G 18 1_555 2.508 -2.818 3.509 8.329 14.159 42.581 -4.911 -2.497 2.896 18.687 -10.993 45.502 13 AA_5MU54PSU55:G181MA58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A PSU 39 1_555 A A 31 1_555 A 5MC 40 1_555 A G 30 1_555 -0.952 -1.123 3.177 0.281 1.081 39.297 -1.793 1.447 3.140 1.607 -0.417 39.312 14 AA_PSU395MC40:G30A31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A 5MC 40 1_555 A G 30 1_555 A U 41 1_555 A A 29 1_555 -1.446 -2.535 3.326 3.261 8.111 32.049 -5.666 3.025 2.473 14.360 -5.773 33.189 15 AA_5MC40U41:A29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A U 41 1_555 A A 29 1_555 A G 42 1_555 A C 28 1_555 0.475 -1.802 3.678 -6.022 0.929 27.529 -3.941 -2.525 3.437 1.923 12.461 28.182 16 AA_U41G42:C28A29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 42 1_555 A C 28 1_555 A G 43 1_555 A C 27 1_555 0.333 -1.825 3.141 3.710 3.864 35.799 -3.448 -0.047 2.953 6.242 -5.995 36.184 17 AA_G42G43:C27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A G 43 1_555 A C 27 1_555 A A 44 1_555 A M2G 26 1_555 -0.706 -1.675 3.694 10.358 8.672 32.677 -4.096 2.757 2.826 14.656 -17.506 35.289 18 AA_G43A44:M2G26C27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 44 1_555 A M2G 26 1_555 A 2MG 10 1_555 A C 25 1_555 -2.620 -3.290 3.363 17.135 14.996 63.546 -3.468 2.933 1.947 13.782 -15.749 67.099 19 AA_A442MG10:C25M2G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A 2MG 10 1_555 A C 25 1_555 A C 11 1_555 A G 24 1_555 -0.752 -1.693 2.944 -4.296 3.275 33.324 -3.389 0.676 2.842 5.664 7.430 33.747 20 AA_2MG10C11:G24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A C 11 1_555 A G 24 1_555 A U 12 1_555 A A 23 1_555 -0.143 -1.231 3.288 5.189 9.886 36.416 -3.092 0.851 2.825 15.380 -8.072 38.033 21 AA_C11U12:A23G24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A C 13 1_555 A G 22 1_555 1.492 -1.888 3.258 4.307 -2.230 28.179 -3.291 -1.993 3.577 -4.538 -8.763 28.585 22 AA_U12C13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 22 1_555 A A 14 1_555 A U 8 1_555 -2.006 -0.085 3.406 5.046 -9.357 55.079 0.455 2.430 3.200 -10.014 -5.400 56.017 23 AA_C13A14:U8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 48 1_555 2.566 -3.342 3.549 -2.498 15.392 -67.326 2.271 2.157 4.218 -13.696 -2.223 -68.900 24 AA_A14G15:C48U8_AA A 14 ? A 8 ? A 15 ? A 48 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH #