data_4TZX # _entry.id 4TZX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4TZX pdb_00004tzx 10.2210/pdb4tzx/pdb WWPDB D_1000202585 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4TZP PDB . unspecified 4TZV PDB . unspecified 4TZW PDB . unspecified 4TZY PDB . unspecified 4TZZ PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4TZX _pdbx_database_status.recvd_initial_deposition_date 2014-07-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, J.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first 1363 _citation.page_last 1371 _citation.title 'Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.' _citation.year 2014 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2014.07.011 _citation.pdbx_database_id_PubMed 25185828 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, J.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # _cell.entry_id 4TZX _cell.length_a 49.641 _cell.length_b 152.839 _cell.length_c 24.991 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Vibrio vulnificus Adenine Riboswitch' 22687.383 1 ? ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 4 water nat water 18.015 111 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 U n 1 36 U n 1 37 U n 1 38 C n 1 39 U n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 C n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4TZX _struct_ref.pdbx_db_accession 4TZX _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4TZX _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4TZX _struct_ref_seq.db_align_beg 13 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 83 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 83 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4TZX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Mg, PEG, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-01-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Kohzu HLD8-24 monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4TZX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.01 _reflns.d_resolution_low 47.21 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13466 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.7 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.13 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.993 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4TZX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.01 _refine.ls_d_res_low 47.21 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13463 _refine.ls_number_reflns_R_free 1346 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.55 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2272 _refine.ls_R_factor_R_free 0.2566 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2239 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1Y26 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.98 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.34 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1502 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1632 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 47.21 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.001 ? 1688 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.349 ? 2623 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 11.692 ? 849 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.019 ? 355 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 72 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 2.01 2.0776 . . 135 1205 99.00 . . . 0.3758 . 0.3585 . . . . . . . . 'X-RAY DIFFRACTION' 2.0776 2.1607 . . 127 1146 100.00 . . . 0.3903 . 0.3315 . . . . . . . . 'X-RAY DIFFRACTION' 2.1607 2.2591 . . 135 1203 100.00 . . . 0.3505 . 0.3200 . . . . . . . . 'X-RAY DIFFRACTION' 2.2591 2.3782 . . 130 1174 100.00 . . . 0.3806 . 0.3168 . . . . . . . . 'X-RAY DIFFRACTION' 2.3782 2.5272 . . 135 1216 100.00 . . . 0.3412 . 0.3074 . . . . . . . . 'X-RAY DIFFRACTION' 2.5272 2.7223 . . 132 1186 100.00 . . . 0.3489 . 0.3160 . . . . . . . . 'X-RAY DIFFRACTION' 2.7223 2.9962 . . 133 1197 100.00 . . . 0.3428 . 0.2854 . . . . . . . . 'X-RAY DIFFRACTION' 2.9962 3.4296 . . 134 1224 100.00 . . . 0.2229 . 0.1920 . . . . . . . . 'X-RAY DIFFRACTION' 3.4296 4.3205 . . 138 1250 100.00 . . . 0.2032 . 0.1813 . . . . . . . . 'X-RAY DIFFRACTION' 4.3205 47.2262 . . 147 1316 99.00 . . . 0.1861 . 0.1611 . . . . . . . . # _struct.entry_id 4TZX _struct.title 'Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4TZX _struct_keywords.text 'Riboswitch, Adenine, RNA, Gene regulation' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 11 OP2 ? ? ? 1_555 G MG . MG ? ? X A 23 X MG 106 1_555 ? ? ? ? ? ? ? 2.530 ? ? metalc2 metalc ? ? A A 12 OP1 ? ? ? 1_555 D MG . MG ? ? X A 24 X MG 103 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc3 metalc ? ? A U 16 O4 ? ? ? 1_555 I MG . MG ? ? X U 28 X MG 108 1_555 ? ? ? ? ? ? ? 2.826 ? ? metalc4 metalc ? ? A G 26 "O2'" ? ? ? 1_555 H MG . MG ? ? X G 38 X MG 107 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc5 metalc ? ? A G 30 O6 ? ? ? 1_555 I MG . MG ? ? X G 42 X MG 108 1_555 ? ? ? ? ? ? ? 2.640 ? ? metalc6 metalc ? ? A G 31 O6 ? ? ? 1_555 I MG . MG ? ? X G 43 X MG 108 1_555 ? ? ? ? ? ? ? 2.958 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 102 X HOH 244 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 102 X HOH 257 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 102 X HOH 261 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 102 X HOH 283 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 102 X HOH 285 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 103 X HOH 242 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 103 X HOH 246 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 103 X HOH 251 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 103 X HOH 272 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 103 X HOH 302 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 104 X HOH 210 4_454 ? ? ? ? ? ? ? 2.170 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 104 X HOH 211 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 104 X HOH 225 4_454 ? ? ? ? ? ? ? 2.199 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 105 X HOH 249 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 105 X HOH 264 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 105 X HOH 270 1_555 ? ? ? ? ? ? ? 2.594 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 105 X HOH 295 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc24 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 106 X HOH 297 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc25 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 106 X HOH 303 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc26 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 107 X HOH 282 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc27 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 107 X HOH 291 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc28 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 108 X HOH 288 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc29 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 108 X HOH 301 1_555 ? ? ? ? ? ? ? 2.867 ? ? metalc30 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 109 X HOH 207 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc31 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 109 X HOH 219 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc32 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 109 X HOH 232 1_556 ? ? ? ? ? ? ? 2.110 ? ? metalc33 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 109 X HOH 237 1_556 ? ? ? ? ? ? ? 2.246 ? ? metalc34 metalc ? ? K MG . MG ? ? ? 1_555 L HOH . O ? ? X MG 110 X HOH 308 1_555 ? ? ? ? ? ? ? 2.854 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 71 N3 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 70 N3 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 70 O2 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 70 N4 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 69 N3 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 69 O2 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 69 N4 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 68 N3 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 68 O4 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 67 N3 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 67 O4 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 66 O2 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 66 N4 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 10 O4 ? ? ? 1_555 A G 34 N1 ? ? X U 22 X G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog25 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog26 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 30 O6 ? ? X U 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 30 N1 ? ? X U 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? X U 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog41 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? X U 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N2 ? ? X U 34 X G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog45 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? X U 34 X A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? X U 34 X A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? X A 35 X A 64 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 48 N4 ? ? X G 37 X C 60 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog49 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? X G 38 X A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? X G 38 X A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 39 O4 ? ? X U 47 X U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog61 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 64 N3 ? ? X U 49 X A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog62 hydrog ? ? A C 38 N4 ? ? ? 1_555 A U 63 O2 ? ? X C 50 X U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog63 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? X C 61 X A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X ADE 101 ? 8 'binding site for residue ADE X 101' AC2 Software X MG 102 ? 5 'binding site for residue MG X 102' AC3 Software X MG 103 ? 6 'binding site for residue MG X 103' AC4 Software X MG 104 ? 3 'binding site for residue MG X 104' AC5 Software X MG 105 ? 5 'binding site for residue MG X 105' AC6 Software X MG 106 ? 3 'binding site for residue MG X 106' AC7 Software X MG 107 ? 5 'binding site for residue MG X 107' AC8 Software X MG 108 ? 7 'binding site for residue MG X 108' AC9 Software X MG 109 ? 5 'binding site for residue MG X 109' AD1 Software X MG 110 ? 3 'binding site for residue MG X 110' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 A A 9 ? A X 21 . ? 1_555 ? 2 AC1 8 U A 10 ? U X 22 . ? 1_555 ? 3 AC1 8 U A 35 ? U X 47 . ? 1_555 ? 4 AC1 8 U A 39 ? U X 51 . ? 1_555 ? 5 AC1 8 A A 40 ? A X 52 . ? 1_555 ? 6 AC1 8 A A 61 ? A X 73 . ? 1_555 ? 7 AC1 8 U A 62 ? U X 74 . ? 1_555 ? 8 AC1 8 U A 63 ? U X 75 . ? 1_555 ? 9 AC2 5 HOH L . ? HOH X 244 . ? 1_555 ? 10 AC2 5 HOH L . ? HOH X 257 . ? 1_555 ? 11 AC2 5 HOH L . ? HOH X 261 . ? 1_555 ? 12 AC2 5 HOH L . ? HOH X 283 . ? 1_555 ? 13 AC2 5 HOH L . ? HOH X 285 . ? 1_555 ? 14 AC3 6 A A 12 ? A X 24 . ? 1_555 ? 15 AC3 6 HOH L . ? HOH X 242 . ? 1_555 ? 16 AC3 6 HOH L . ? HOH X 246 . ? 1_555 ? 17 AC3 6 HOH L . ? HOH X 251 . ? 1_555 ? 18 AC3 6 HOH L . ? HOH X 272 . ? 1_555 ? 19 AC3 6 HOH L . ? HOH X 302 . ? 1_555 ? 20 AC4 3 HOH L . ? HOH X 210 . ? 4_454 ? 21 AC4 3 HOH L . ? HOH X 211 . ? 1_555 ? 22 AC4 3 HOH L . ? HOH X 225 . ? 4_454 ? 23 AC5 5 G A 31 ? G X 43 . ? 1_555 ? 24 AC5 5 HOH L . ? HOH X 249 . ? 1_555 ? 25 AC5 5 HOH L . ? HOH X 264 . ? 1_555 ? 26 AC5 5 HOH L . ? HOH X 270 . ? 1_555 ? 27 AC5 5 HOH L . ? HOH X 295 . ? 1_555 ? 28 AC6 3 A A 11 ? A X 23 . ? 1_555 ? 29 AC6 3 HOH L . ? HOH X 297 . ? 1_555 ? 30 AC6 3 HOH L . ? HOH X 303 . ? 1_555 ? 31 AC7 5 G A 20 ? G X 32 . ? 1_555 ? 32 AC7 5 A A 21 ? A X 33 . ? 1_555 ? 33 AC7 5 G A 26 ? G X 38 . ? 1_555 ? 34 AC7 5 HOH L . ? HOH X 282 . ? 1_555 ? 35 AC7 5 HOH L . ? HOH X 291 . ? 1_555 ? 36 AC8 7 C A 15 ? C X 27 . ? 1_555 ? 37 AC8 7 U A 16 ? U X 28 . ? 1_555 ? 38 AC8 7 U A 29 ? U X 41 . ? 1_555 ? 39 AC8 7 G A 30 ? G X 42 . ? 1_555 ? 40 AC8 7 G A 31 ? G X 43 . ? 1_555 ? 41 AC8 7 HOH L . ? HOH X 288 . ? 1_555 ? 42 AC8 7 HOH L . ? HOH X 301 . ? 1_555 ? 43 AC9 5 U A 28 ? U X 40 . ? 1_555 ? 44 AC9 5 HOH L . ? HOH X 207 . ? 1_555 ? 45 AC9 5 HOH L . ? HOH X 219 . ? 1_555 ? 46 AC9 5 HOH L . ? HOH X 232 . ? 1_556 ? 47 AC9 5 HOH L . ? HOH X 237 . ? 1_556 ? 48 AD1 3 A A 64 ? A X 76 . ? 1_555 ? 49 AD1 3 U A 65 ? U X 77 . ? 1_555 ? 50 AD1 3 HOH L . ? HOH X 308 . ? 1_555 ? # _atom_sites.entry_id 4TZX _atom_sites.fract_transf_matrix[1][1] 0.020145 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006543 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040014 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G X . n A 1 2 G 2 14 14 G G X . n A 1 3 G 3 15 15 G G X . n A 1 4 A 4 16 16 A A X . n A 1 5 A 5 17 17 A A X . n A 1 6 G 6 18 18 G G X . n A 1 7 A 7 19 19 A A X . n A 1 8 U 8 20 20 U U X . n A 1 9 A 9 21 21 A A X . n A 1 10 U 10 22 22 U U X . n A 1 11 A 11 23 23 A A X . n A 1 12 A 12 24 24 A A X . n A 1 13 U 13 25 25 U U X . n A 1 14 C 14 26 26 C C X . n A 1 15 C 15 27 27 C C X . n A 1 16 U 16 28 28 U U X . n A 1 17 A 17 29 29 A A X . n A 1 18 A 18 30 30 A A X . n A 1 19 U 19 31 31 U U X . n A 1 20 G 20 32 32 G G X . n A 1 21 A 21 33 33 A A X . n A 1 22 U 22 34 34 U U X . n A 1 23 A 23 35 35 A A X . n A 1 24 U 24 36 36 U U X . n A 1 25 G 25 37 37 G G X . n A 1 26 G 26 38 38 G G X . n A 1 27 U 27 39 39 U U X . n A 1 28 U 28 40 40 U U X . n A 1 29 U 29 41 41 U U X . n A 1 30 G 30 42 42 G G X . n A 1 31 G 31 43 43 G G X . n A 1 32 G 32 44 44 G G X . n A 1 33 A 33 45 45 A A X . n A 1 34 G 34 46 46 G G X . n A 1 35 U 35 47 47 U U X . n A 1 36 U 36 48 48 U U X . n A 1 37 U 37 49 49 U U X . n A 1 38 C 38 50 50 C C X . n A 1 39 U 39 51 51 U U X . n A 1 40 A 40 52 52 A A X . n A 1 41 C 41 53 53 C C X . n A 1 42 C 42 54 54 C C X . n A 1 43 A 43 55 55 A A X . n A 1 44 A 44 56 56 A A X . n A 1 45 G 45 57 57 G G X . n A 1 46 A 46 58 58 A A X . n A 1 47 G 47 59 59 G G X . n A 1 48 C 48 60 60 C C X . n A 1 49 C 49 61 61 C C X . n A 1 50 U 50 62 62 U U X . n A 1 51 U 51 63 63 U U X . n A 1 52 A 52 64 64 A A X . n A 1 53 A 53 65 65 A A X . n A 1 54 A 54 66 66 A A X . n A 1 55 C 55 67 67 C C X . n A 1 56 U 56 68 68 U U X . n A 1 57 C 57 69 69 C C X . n A 1 58 U 58 70 70 U U X . n A 1 59 U 59 71 71 U U X . n A 1 60 G 60 72 72 G G X . n A 1 61 A 61 73 73 A A X . n A 1 62 U 62 74 74 U U X . n A 1 63 U 63 75 75 U U X . n A 1 64 A 64 76 76 A A X . n A 1 65 U 65 77 77 U U X . n A 1 66 C 66 78 78 C C X . n A 1 67 U 67 79 79 U U X . n A 1 68 U 68 80 80 U U X . n A 1 69 C 69 81 81 C C X . n A 1 70 C 70 82 82 C C X . n A 1 71 C 71 83 83 C C X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE 1 101 90 ADE ADE X . C 3 MG 1 102 101 MG MG X . D 3 MG 1 103 102 MG MG X . E 3 MG 1 104 103 MG MG X . F 3 MG 1 105 104 MG MG X . G 3 MG 1 106 105 MG MG X . H 3 MG 1 107 106 MG MG X . I 3 MG 1 108 107 MG MG X . J 3 MG 1 109 108 MG MG X . K 3 MG 1 110 109 MG MG X . L 4 HOH 1 201 100 HOH HOH X . L 4 HOH 2 202 101 HOH HOH X . L 4 HOH 3 203 43 HOH HOH X . L 4 HOH 4 204 103 HOH HOH X . L 4 HOH 5 205 83 HOH HOH X . L 4 HOH 6 206 70 HOH HOH X . L 4 HOH 7 207 3 HOH HOH X . L 4 HOH 8 208 48 HOH HOH X . L 4 HOH 9 209 94 HOH HOH X . L 4 HOH 10 210 9 HOH HOH X . L 4 HOH 11 211 58 HOH HOH X . L 4 HOH 12 212 90 HOH HOH X . L 4 HOH 13 213 47 HOH HOH X . L 4 HOH 14 214 77 HOH HOH X . L 4 HOH 15 215 108 HOH HOH X . L 4 HOH 16 216 65 HOH HOH X . L 4 HOH 17 217 92 HOH HOH X . L 4 HOH 18 218 26 HOH HOH X . L 4 HOH 19 219 38 HOH HOH X . L 4 HOH 20 220 40 HOH HOH X . L 4 HOH 21 221 42 HOH HOH X . L 4 HOH 22 222 98 HOH HOH X . L 4 HOH 23 223 80 HOH HOH X . L 4 HOH 24 224 49 HOH HOH X . L 4 HOH 25 225 109 HOH HOH X . L 4 HOH 26 226 91 HOH HOH X . L 4 HOH 27 227 75 HOH HOH X . L 4 HOH 28 228 8 HOH HOH X . L 4 HOH 29 229 76 HOH HOH X . L 4 HOH 30 230 27 HOH HOH X . L 4 HOH 31 231 56 HOH HOH X . L 4 HOH 32 232 96 HOH HOH X . L 4 HOH 33 233 87 HOH HOH X . L 4 HOH 34 234 81 HOH HOH X . L 4 HOH 35 235 18 HOH HOH X . L 4 HOH 36 236 53 HOH HOH X . L 4 HOH 37 237 73 HOH HOH X . L 4 HOH 38 238 34 HOH HOH X . L 4 HOH 39 239 86 HOH HOH X . L 4 HOH 40 240 88 HOH HOH X . L 4 HOH 41 241 1 HOH HOH X . L 4 HOH 42 242 2 HOH HOH X . L 4 HOH 43 243 4 HOH HOH X . L 4 HOH 44 244 5 HOH HOH X . L 4 HOH 45 245 6 HOH HOH X . L 4 HOH 46 246 7 HOH HOH X . L 4 HOH 47 247 10 HOH HOH X . L 4 HOH 48 248 11 HOH HOH X . L 4 HOH 49 249 12 HOH HOH X . L 4 HOH 50 250 13 HOH HOH X . L 4 HOH 51 251 14 HOH HOH X . L 4 HOH 52 252 15 HOH HOH X . L 4 HOH 53 253 16 HOH HOH X . L 4 HOH 54 254 17 HOH HOH X . L 4 HOH 55 255 19 HOH HOH X . L 4 HOH 56 256 20 HOH HOH X . L 4 HOH 57 257 21 HOH HOH X . L 4 HOH 58 258 22 HOH HOH X . L 4 HOH 59 259 23 HOH HOH X . L 4 HOH 60 260 24 HOH HOH X . L 4 HOH 61 261 25 HOH HOH X . L 4 HOH 62 262 28 HOH HOH X . L 4 HOH 63 263 29 HOH HOH X . L 4 HOH 64 264 30 HOH HOH X . L 4 HOH 65 265 31 HOH HOH X . L 4 HOH 66 266 32 HOH HOH X . L 4 HOH 67 267 33 HOH HOH X . L 4 HOH 68 268 35 HOH HOH X . L 4 HOH 69 269 36 HOH HOH X . L 4 HOH 70 270 37 HOH HOH X . L 4 HOH 71 271 39 HOH HOH X . L 4 HOH 72 272 41 HOH HOH X . L 4 HOH 73 273 44 HOH HOH X . L 4 HOH 74 274 45 HOH HOH X . L 4 HOH 75 275 46 HOH HOH X . L 4 HOH 76 276 50 HOH HOH X . L 4 HOH 77 277 51 HOH HOH X . L 4 HOH 78 278 52 HOH HOH X . L 4 HOH 79 279 54 HOH HOH X . L 4 HOH 80 280 55 HOH HOH X . L 4 HOH 81 281 57 HOH HOH X . L 4 HOH 82 282 59 HOH HOH X . L 4 HOH 83 283 60 HOH HOH X . L 4 HOH 84 284 61 HOH HOH X . L 4 HOH 85 285 62 HOH HOH X . L 4 HOH 86 286 63 HOH HOH X . L 4 HOH 87 287 64 HOH HOH X . L 4 HOH 88 288 66 HOH HOH X . L 4 HOH 89 289 67 HOH HOH X . L 4 HOH 90 290 68 HOH HOH X . L 4 HOH 91 291 69 HOH HOH X . L 4 HOH 92 292 71 HOH HOH X . L 4 HOH 93 293 72 HOH HOH X . L 4 HOH 94 294 74 HOH HOH X . L 4 HOH 95 295 78 HOH HOH X . L 4 HOH 96 296 79 HOH HOH X . L 4 HOH 97 297 82 HOH HOH X . L 4 HOH 98 298 84 HOH HOH X . L 4 HOH 99 299 85 HOH HOH X . L 4 HOH 100 300 89 HOH HOH X . L 4 HOH 101 301 93 HOH HOH X . L 4 HOH 102 302 95 HOH HOH X . L 4 HOH 103 303 97 HOH HOH X . L 4 HOH 104 304 99 HOH HOH X . L 4 HOH 105 305 102 HOH HOH X . L 4 HOH 106 306 104 HOH HOH X . L 4 HOH 107 307 105 HOH HOH X . L 4 HOH 108 308 106 HOH HOH X . L 4 HOH 109 309 107 HOH HOH X . L 4 HOH 110 310 110 HOH HOH X . L 4 HOH 111 311 111 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? L HOH . ? X HOH 297 ? 1_555 61.7 ? 2 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? L HOH . ? X HOH 303 ? 1_555 105.3 ? 3 O ? L HOH . ? X HOH 297 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? L HOH . ? X HOH 303 ? 1_555 71.9 ? 4 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 242 ? 1_555 84.8 ? 5 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 246 ? 1_555 100.6 ? 6 O ? L HOH . ? X HOH 242 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 246 ? 1_555 94.4 ? 7 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 251 ? 1_555 89.1 ? 8 O ? L HOH . ? X HOH 242 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 251 ? 1_555 93.1 ? 9 O ? L HOH . ? X HOH 246 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 251 ? 1_555 168.2 ? 10 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 272 ? 1_555 100.2 ? 11 O ? L HOH . ? X HOH 242 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 272 ? 1_555 172.4 ? 12 O ? L HOH . ? X HOH 246 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 272 ? 1_555 90.3 ? 13 O ? L HOH . ? X HOH 251 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 272 ? 1_555 81.4 ? 14 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 302 ? 1_555 171.5 ? 15 O ? L HOH . ? X HOH 242 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 302 ? 1_555 87.6 ? 16 O ? L HOH . ? X HOH 246 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 302 ? 1_555 76.2 ? 17 O ? L HOH . ? X HOH 251 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 302 ? 1_555 95.1 ? 18 O ? L HOH . ? X HOH 272 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? L HOH . ? X HOH 302 ? 1_555 87.8 ? 19 O4 ? A U 16 ? X U 28 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O6 ? A G 30 ? X G 42 ? 1_555 79.2 ? 20 O4 ? A U 16 ? X U 28 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O6 ? A G 31 ? X G 43 ? 1_555 90.3 ? 21 O6 ? A G 30 ? X G 42 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O6 ? A G 31 ? X G 43 ? 1_555 69.6 ? 22 O4 ? A U 16 ? X U 28 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O ? L HOH . ? X HOH 288 ? 1_555 167.9 ? 23 O6 ? A G 30 ? X G 42 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O ? L HOH . ? X HOH 288 ? 1_555 89.4 ? 24 O6 ? A G 31 ? X G 43 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O ? L HOH . ? X HOH 288 ? 1_555 81.8 ? 25 O4 ? A U 16 ? X U 28 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O ? L HOH . ? X HOH 301 ? 1_555 115.8 ? 26 O6 ? A G 30 ? X G 42 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O ? L HOH . ? X HOH 301 ? 1_555 138.4 ? 27 O6 ? A G 31 ? X G 43 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O ? L HOH . ? X HOH 301 ? 1_555 71.7 ? 28 O ? L HOH . ? X HOH 288 ? 1_555 MG ? I MG . ? X MG 108 ? 1_555 O ? L HOH . ? X HOH 301 ? 1_555 70.4 ? 29 "O2'" ? A G 26 ? X G 38 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? L HOH . ? X HOH 282 ? 1_555 154.9 ? 30 "O2'" ? A G 26 ? X G 38 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? L HOH . ? X HOH 291 ? 1_555 86.2 ? 31 O ? L HOH . ? X HOH 282 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? L HOH . ? X HOH 291 ? 1_555 85.2 ? 32 O ? L HOH . ? X HOH 244 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 257 ? 1_555 98.9 ? 33 O ? L HOH . ? X HOH 244 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 261 ? 1_555 93.4 ? 34 O ? L HOH . ? X HOH 257 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 261 ? 1_555 89.2 ? 35 O ? L HOH . ? X HOH 244 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 283 ? 1_555 78.9 ? 36 O ? L HOH . ? X HOH 257 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 283 ? 1_555 83.0 ? 37 O ? L HOH . ? X HOH 261 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 283 ? 1_555 168.0 ? 38 O ? L HOH . ? X HOH 244 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 285 ? 1_555 76.2 ? 39 O ? L HOH . ? X HOH 257 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 285 ? 1_555 169.0 ? 40 O ? L HOH . ? X HOH 261 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 285 ? 1_555 100.8 ? 41 O ? L HOH . ? X HOH 283 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? L HOH . ? X HOH 285 ? 1_555 86.3 ? 42 O ? L HOH . ? X HOH 210 ? 4_454 MG ? E MG . ? X MG 104 ? 1_555 O ? L HOH . ? X HOH 211 ? 1_555 130.6 ? 43 O ? L HOH . ? X HOH 210 ? 4_454 MG ? E MG . ? X MG 104 ? 1_555 O ? L HOH . ? X HOH 225 ? 4_454 87.5 ? 44 O ? L HOH . ? X HOH 211 ? 1_555 MG ? E MG . ? X MG 104 ? 1_555 O ? L HOH . ? X HOH 225 ? 4_454 61.9 ? 45 O ? L HOH . ? X HOH 249 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? L HOH . ? X HOH 264 ? 1_555 64.5 ? 46 O ? L HOH . ? X HOH 249 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? L HOH . ? X HOH 270 ? 1_555 86.1 ? 47 O ? L HOH . ? X HOH 264 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? L HOH . ? X HOH 270 ? 1_555 112.0 ? 48 O ? L HOH . ? X HOH 249 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? L HOH . ? X HOH 295 ? 1_555 77.4 ? 49 O ? L HOH . ? X HOH 264 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? L HOH . ? X HOH 295 ? 1_555 66.0 ? 50 O ? L HOH . ? X HOH 270 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? L HOH . ? X HOH 295 ? 1_555 162.6 ? 51 O ? L HOH . ? X HOH 207 ? 1_555 MG ? J MG . ? X MG 109 ? 1_555 O ? L HOH . ? X HOH 219 ? 1_555 93.3 ? 52 O ? L HOH . ? X HOH 207 ? 1_555 MG ? J MG . ? X MG 109 ? 1_555 O ? L HOH . ? X HOH 232 ? 1_556 154.2 ? 53 O ? L HOH . ? X HOH 219 ? 1_555 MG ? J MG . ? X MG 109 ? 1_555 O ? L HOH . ? X HOH 232 ? 1_556 93.3 ? 54 O ? L HOH . ? X HOH 207 ? 1_555 MG ? J MG . ? X MG 109 ? 1_555 O ? L HOH . ? X HOH 237 ? 1_556 93.6 ? 55 O ? L HOH . ? X HOH 219 ? 1_555 MG ? J MG . ? X MG 109 ? 1_555 O ? L HOH . ? X HOH 237 ? 1_556 163.2 ? 56 O ? L HOH . ? X HOH 232 ? 1_556 MG ? J MG . ? X MG 109 ? 1_555 O ? L HOH . ? X HOH 237 ? 1_556 74.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-10 2 'Structure model' 1 1 2014-09-24 3 'Structure model' 1 2 2015-02-04 4 'Structure model' 1 3 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' citation 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_entity_src_syn 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' pdbx_refine_tls_group 9 4 'Structure model' pdbx_struct_assembly 10 4 'Structure model' pdbx_struct_conn_angle 11 4 'Structure model' pdbx_struct_oper_list 12 4 'Structure model' refine_hist 13 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_database_status.pdb_format_compatible' 5 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 6 4 'Structure model' '_pdbx_refine_tls_group.selection_details' 7 4 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 12 4 'Structure model' '_pdbx_struct_conn_angle.value' 13 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -34.497 6.913 -16.237 0.4202 0.4759 0.9931 -0.1427 0.0448 -0.0711 0.9187 3.1141 0.0403 1.6499 -0.1709 -0.3987 0.1430 -0.5816 -0.0758 -0.1963 -1.3512 0.6128 -0.4166 0.2776 -0.3088 'X-RAY DIFFRACTION' 2 ? refined -15.214 30.411 -7.949 0.3636 0.3274 0.3293 -0.0410 -0.0685 0.1099 1.0043 2.5301 1.1823 1.3236 -0.0059 1.0679 0.2948 -0.2416 0.0265 -0.2313 -0.0320 -0.4943 0.2380 -0.1145 -0.0942 'X-RAY DIFFRACTION' 3 ? refined -20.813 19.377 -10.596 0.3251 0.2889 0.2805 0.0433 -0.0061 -0.0270 2.3611 2.9307 1.6661 0.1704 0.4708 -0.4662 -0.0561 0.0744 -0.0290 -0.2398 -0.2899 -0.4261 0.1049 -0.1190 -0.2683 'X-RAY DIFFRACTION' 4 ? refined -22.270 13.968 -12.148 0.3162 0.2674 0.3893 -0.0255 -0.0042 0.0194 1.9253 2.4826 1.0515 -0.3107 -0.2467 -0.4925 -0.0090 0.0030 -0.0153 -0.1544 -0.8390 -0.4043 -0.0129 0.0762 -0.1544 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 13 X 23 '( CHAIN X AND RESID 13:23 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 X 24 X 46 '( CHAIN X AND RESID 24:46 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 X 47 X 61 '( CHAIN X AND RESID 47:61 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 X 62 X 83 '( CHAIN X AND ( RESID 62:83 OR RESID 101:101 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 4 X 101 X 101 '( CHAIN X AND ( RESID 62:83 OR RESID 101:101 ) )' ? ? ? ? ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(phenix.refine: 1.8.4_1496)' _software.pdbx_ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 HOH O O N N 126 HOH H1 H N N 127 HOH H2 H N N 128 MG MG MG N N 129 U OP3 O N N 130 U P P N N 131 U OP1 O N N 132 U OP2 O N N 133 U "O5'" O N N 134 U "C5'" C N N 135 U "C4'" C N R 136 U "O4'" O N N 137 U "C3'" C N S 138 U "O3'" O N N 139 U "C2'" C N R 140 U "O2'" O N N 141 U "C1'" C N R 142 U N1 N N N 143 U C2 C N N 144 U O2 O N N 145 U N3 N N N 146 U C4 C N N 147 U O4 O N N 148 U C5 C N N 149 U C6 C N N 150 U HOP3 H N N 151 U HOP2 H N N 152 U "H5'" H N N 153 U "H5''" H N N 154 U "H4'" H N N 155 U "H3'" H N N 156 U "HO3'" H N N 157 U "H2'" H N N 158 U "HO2'" H N N 159 U "H1'" H N N 160 U H3 H N N 161 U H5 H N N 162 U H6 H N N 163 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 U OP3 P sing N N 134 U OP3 HOP3 sing N N 135 U P OP1 doub N N 136 U P OP2 sing N N 137 U P "O5'" sing N N 138 U OP2 HOP2 sing N N 139 U "O5'" "C5'" sing N N 140 U "C5'" "C4'" sing N N 141 U "C5'" "H5'" sing N N 142 U "C5'" "H5''" sing N N 143 U "C4'" "O4'" sing N N 144 U "C4'" "C3'" sing N N 145 U "C4'" "H4'" sing N N 146 U "O4'" "C1'" sing N N 147 U "C3'" "O3'" sing N N 148 U "C3'" "C2'" sing N N 149 U "C3'" "H3'" sing N N 150 U "O3'" "HO3'" sing N N 151 U "C2'" "O2'" sing N N 152 U "C2'" "C1'" sing N N 153 U "C2'" "H2'" sing N N 154 U "O2'" "HO2'" sing N N 155 U "C1'" N1 sing N N 156 U "C1'" "H1'" sing N N 157 U N1 C2 sing N N 158 U N1 C6 sing N N 159 U C2 O2 doub N N 160 U C2 N3 sing N N 161 U N3 C4 sing N N 162 U N3 H3 sing N N 163 U C4 O4 doub N N 164 U C4 C5 sing N N 165 U C5 C6 doub N N 166 U C5 H5 sing N N 167 U C6 H6 sing N N 168 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature _ndb_struct_conf_na.feature_count 4TZX 'double helix' ? 4TZX 'a-form double helix' ? 4TZX 'mismatched base pair' ? 4TZX 'internal loop' ? 4TZX 'triple helix' ? 4TZX 'three-way junction' ? # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 0.799 0.248 -0.085 -0.195 -14.842 -12.302 1 X_G13:C83_X X 13 ? X 83 ? ? 1 1 A G 2 1_555 A C 70 1_555 -0.419 -0.412 0.128 -4.220 -12.091 -5.692 2 X_G14:C82_X X 14 ? X 82 ? 19 1 1 A G 3 1_555 A C 69 1_555 -0.106 -0.372 -0.078 -7.698 -10.288 2.020 3 X_G15:C81_X X 15 ? X 81 ? 19 1 1 A A 4 1_555 A U 68 1_555 -0.271 -0.087 -0.033 -7.677 -10.492 -0.861 4 X_A16:U80_X X 16 ? X 80 ? 20 1 1 A A 5 1_555 A U 67 1_555 -0.054 0.022 -0.309 -6.073 -12.490 -10.120 5 X_A17:U79_X X 17 ? X 79 ? 20 1 1 A G 6 1_555 A C 66 1_555 0.454 -0.004 -0.064 -6.377 -11.366 8.234 6 X_G18:C78_X X 18 ? X 78 ? 19 1 1 A A 7 1_555 A U 65 1_555 -0.208 -0.129 0.123 -3.385 -14.964 7.046 7 X_A19:U77_X X 19 ? X 77 ? 20 1 1 A U 8 1_555 A A 64 1_555 0.231 -0.074 0.223 -8.130 -16.534 9.051 8 X_U20:A76_X X 20 ? X 76 ? 20 1 1 A A 9 1_555 A U 63 1_555 0.256 -0.149 0.028 -2.806 -8.578 3.409 9 X_A21:U75_X X 21 ? X 75 ? 20 1 1 A U 39 1_555 A U 35 1_555 -3.436 -0.534 0.605 -36.342 34.903 -73.017 10 X_U51:U47_X X 51 ? X 47 ? ? ? 1 A A 40 1_555 A U 10 1_555 0.276 -0.102 -0.355 -17.574 -3.709 3.175 11 X_A52:U22_X X 52 ? X 22 ? 20 1 1 A C 41 1_555 A G 34 1_555 0.212 -0.216 -0.217 15.625 4.377 -2.771 12 X_C53:G46_X X 53 ? X 46 ? 19 1 1 A U 13 1_555 A A 33 1_555 -0.173 -0.109 -0.078 11.025 -9.528 -3.218 13 X_U25:A45_X X 25 ? X 45 ? 20 1 1 A C 14 1_555 A G 32 1_555 0.204 -0.003 -0.167 8.034 -6.199 3.284 14 X_C26:G44_X X 26 ? X 44 ? 19 1 1 A C 15 1_555 A G 31 1_555 0.053 -0.114 -0.350 4.466 -4.193 0.875 15 X_C27:G43_X X 27 ? X 43 ? 19 1 1 A U 16 1_555 A G 30 1_555 2.118 -0.627 -0.114 3.126 -6.927 0.756 16 X_U28:G42_X X 28 ? X 42 ? 28 1 1 A A 17 1_555 A U 29 1_555 -0.359 -0.209 0.175 0.872 -8.729 4.306 17 X_A29:U41_X X 29 ? X 41 ? 20 1 1 A A 18 1_555 A U 28 1_555 0.027 -0.205 0.341 15.610 -14.208 6.170 18 X_A30:U40_X X 30 ? X 40 ? 20 1 1 A U 19 1_555 A U 27 1_555 2.367 -1.754 0.048 5.884 -22.185 18.965 19 X_U31:U39_X X 31 ? X 39 ? 16 1 1 A A 23 1_555 A A 52 1_555 3.922 -5.960 1.238 -17.268 -11.657 154.953 20 X_A35:A64_X X 35 ? X 64 ? ? ? 1 A G 25 1_555 A C 49 1_555 0.000 0.202 0.776 6.017 -16.612 -4.551 21 X_G37:C61_X X 37 ? X 61 ? 19 1 1 A A 53 1_555 A U 22 1_555 -4.303 -1.955 -0.724 -2.599 -1.093 -104.193 22 X_A65:U34_X X 65 ? X 34 ? 24 4 1 A G 26 1_555 A C 48 1_555 0.293 0.056 0.495 20.524 -15.521 -4.025 23 X_G38:C60_X X 38 ? X 60 ? 19 1 1 A C 55 1_555 A G 47 1_555 -0.008 -0.279 -0.262 18.027 -24.801 2.027 24 X_C67:G59_X X 67 ? X 59 ? 19 1 1 A U 56 1_555 A A 46 1_555 -0.427 -0.212 0.366 -1.303 -13.698 0.123 25 X_U68:A58_X X 68 ? X 58 ? 20 1 1 A C 57 1_555 A G 45 1_555 -0.061 -0.076 0.062 5.081 -15.392 -0.831 26 X_C69:G57_X X 69 ? X 57 ? 19 1 1 A U 58 1_555 A A 44 1_555 -0.158 -0.106 0.193 -3.123 -15.838 -3.236 27 X_U70:A56_X X 70 ? X 56 ? 20 1 1 A U 59 1_555 A A 43 1_555 -0.030 -0.133 0.270 6.804 -9.003 0.326 28 X_U71:A55_X X 71 ? X 55 ? 20 1 1 A G 60 1_555 A C 42 1_555 -0.403 0.141 -0.266 6.601 -9.661 1.958 29 X_G72:C54_X X 72 ? X 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 71 1_555 A G 2 1_555 A C 70 1_555 0.107 -1.542 3.164 -4.148 7.442 32.362 -3.806 -0.813 2.718 13.072 7.286 33.436 1 XX_G13G14:C82C83_XX X 13 ? X 83 ? X 14 ? X 82 ? 1 A G 2 1_555 A C 70 1_555 A G 3 1_555 A C 69 1_555 0.487 -1.541 3.305 1.006 7.113 35.826 -3.411 -0.642 2.967 11.421 -1.615 36.516 2 XX_G14G15:C81C82_XX X 14 ? X 82 ? X 15 ? X 81 ? 1 A G 3 1_555 A C 69 1_555 A A 4 1_555 A U 68 1_555 0.302 -1.585 3.127 1.111 7.949 30.799 -4.200 -0.369 2.654 14.657 -2.048 31.803 3 XX_G15A16:U80C81_XX X 15 ? X 81 ? X 16 ? X 80 ? 1 A A 4 1_555 A U 68 1_555 A A 5 1_555 A U 67 1_555 -0.397 -1.509 3.152 2.066 7.788 31.449 -3.941 1.039 2.680 14.082 -3.736 32.439 4 XX_A16A17:U79U80_XX X 16 ? X 80 ? X 17 ? X 79 ? 1 A A 5 1_555 A U 67 1_555 A G 6 1_555 A C 66 1_555 0.890 -1.287 3.247 -0.738 7.188 35.428 -3.041 -1.533 2.920 11.662 1.197 36.134 5 XX_A17G18:C78U79_XX X 17 ? X 79 ? X 18 ? X 78 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 -0.157 -1.649 2.999 -2.116 8.603 26.277 -5.194 -0.102 2.356 18.275 4.495 27.705 6 XX_G18A19:U77C78_XX X 18 ? X 78 ? X 19 ? X 77 ? 1 A A 7 1_555 A U 65 1_555 A U 8 1_555 A A 64 1_555 -0.011 -1.321 3.289 0.383 11.488 33.831 -3.727 0.070 2.711 19.070 -0.636 35.677 7 XX_A19U20:A76U77_XX X 19 ? X 77 ? X 20 ? X 76 ? 1 A U 8 1_555 A A 64 1_555 A A 9 1_555 A U 63 1_555 0.297 -1.513 2.906 4.754 18.718 29.174 -4.711 0.060 1.688 32.995 -8.380 34.871 8 XX_U20A21:U75A76_XX X 20 ? X 76 ? X 21 ? X 75 ? 1 A A 9 1_555 A U 63 1_555 A U 39 1_555 A U 35 1_555 -1.780 6.265 2.099 14.332 5.639 158.253 3.179 0.932 2.114 2.871 -7.296 158.452 9 XX_A21U51:U47U75_XX X 21 ? X 75 ? X 51 ? X 47 ? 1 A U 39 1_555 A U 35 1_555 A A 40 1_555 A U 10 1_555 0.200 -0.789 3.296 -1.845 24.057 4.525 -7.921 -0.935 -0.175 79.301 6.082 24.542 10 XX_U51A52:U22U47_XX X 51 ? X 47 ? X 52 ? X 22 ? 1 A A 40 1_555 A U 10 1_555 A C 41 1_555 A G 34 1_555 1.918 -0.117 2.553 -1.018 7.459 42.297 -0.730 -2.699 2.454 10.240 1.397 42.931 11 XX_A52C53:G46U22_XX X 52 ? X 22 ? X 53 ? X 46 ? 1 A C 41 1_555 A G 34 1_555 A U 13 1_555 A A 33 1_555 -2.775 -0.560 3.235 -11.170 2.973 49.488 -0.879 2.394 3.702 3.497 13.136 50.737 12 XX_C53U25:A45G46_XX X 53 ? X 46 ? X 25 ? X 45 ? 1 A U 13 1_555 A A 33 1_555 A C 14 1_555 A G 32 1_555 0.630 -1.802 3.406 0.677 0.428 34.468 -3.109 -0.954 3.396 0.722 -1.143 34.477 13 XX_U25C26:G44A45_XX X 25 ? X 45 ? X 26 ? X 44 ? 1 A C 14 1_555 A G 32 1_555 A C 15 1_555 A G 31 1_555 -0.338 -1.951 3.410 0.972 3.437 27.975 -4.811 0.921 3.139 7.073 -2.000 28.198 14 XX_C26C27:G43G44_XX X 26 ? X 44 ? X 27 ? X 43 ? 1 A C 15 1_555 A G 31 1_555 A U 16 1_555 A G 30 1_555 -0.148 -1.526 3.349 0.255 6.165 37.805 -3.090 0.258 3.071 9.437 -0.390 38.287 15 XX_C27U28:G42G43_XX X 27 ? X 43 ? X 28 ? X 42 ? 1 A U 16 1_555 A G 30 1_555 A A 17 1_555 A U 29 1_555 0.265 -1.578 3.136 2.974 8.295 24.990 -5.399 0.121 2.506 18.452 -6.615 26.475 16 XX_U28A29:U41G42_XX X 28 ? X 42 ? X 29 ? X 41 ? 1 A A 17 1_555 A U 29 1_555 A A 18 1_555 A U 28 1_555 0.320 -2.206 2.872 -3.570 6.494 20.786 -7.681 -1.888 2.015 17.306 9.512 22.054 17 XX_A29A30:U40U41_XX X 29 ? X 41 ? X 30 ? X 40 ? 1 A A 18 1_555 A U 28 1_555 A U 19 1_555 A U 27 1_555 0.725 -1.128 3.478 2.133 4.190 45.949 -1.816 -0.733 3.396 5.351 -2.724 46.176 18 XX_A30U31:U39U40_XX X 30 ? X 40 ? X 31 ? X 39 ? 1 A A 23 1_555 A A 52 1_555 A G 25 1_555 A C 49 1_555 -3.729 -1.067 3.122 118.587 -121.746 70.067 0.102 2.490 0.294 -62.402 -60.783 171.779 19 XX_A35G37:C61A64_XX X 35 ? X 64 ? X 37 ? X 61 ? 1 A G 25 1_555 A C 49 1_555 A A 53 1_555 A U 22 1_555 -5.600 4.526 -0.801 -1.411 23.870 114.877 2.699 3.296 -0.159 14.079 0.832 116.458 20 XX_G37A65:U34C61_XX X 37 ? X 61 ? X 65 ? X 34 ? 1 A G 26 1_555 A C 48 1_555 A C 55 1_555 A G 47 1_555 -1.667 -0.398 3.044 0.101 2.124 51.887 -0.586 1.910 3.023 2.426 -0.115 51.927 21 XX_G38C67:G59C60_XX X 38 ? X 60 ? X 67 ? X 59 ? 1 A C 55 1_555 A G 47 1_555 A U 56 1_555 A A 46 1_555 -0.074 -1.670 3.840 -4.723 3.838 33.627 -3.540 -0.732 3.610 6.568 8.082 34.158 22 XX_C67U68:A58G59_XX X 67 ? X 59 ? X 68 ? X 58 ? 1 A U 56 1_555 A A 46 1_555 A C 57 1_555 A G 45 1_555 -0.144 -1.497 3.044 1.972 -1.365 32.129 -2.470 0.589 3.090 -2.462 -3.558 32.216 23 XX_U68C69:G57A58_XX X 68 ? X 58 ? X 69 ? X 57 ? 1 A C 57 1_555 A G 45 1_555 A U 58 1_555 A A 44 1_555 -0.537 -1.448 3.397 -2.804 8.353 31.688 -3.977 0.473 2.965 14.940 5.015 32.860 24 XX_C69U70:A56G57_XX X 69 ? X 57 ? X 70 ? X 56 ? 1 A U 58 1_555 A A 44 1_555 A U 59 1_555 A A 43 1_555 0.286 -1.052 2.984 -1.966 2.704 33.823 -2.187 -0.771 2.873 4.634 3.369 33.983 25 XX_U70U71:A55A56_XX X 70 ? X 56 ? X 71 ? X 55 ? 1 A U 59 1_555 A A 43 1_555 A G 60 1_555 A C 42 1_555 0.045 -1.442 3.242 3.630 8.626 29.703 -4.228 0.564 2.713 16.324 -6.870 31.110 26 XX_U71G72:C54A55_XX X 71 ? X 55 ? X 72 ? X 54 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Y26 _pdbx_initial_refinement_model.details ? #