data_4UF8 # _entry.id 4UF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4UF8 pdb_00004uf8 10.2210/pdb4uf8/pdb PDBE EBI-63336 ? ? WWPDB D_1290063336 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-13 2 'Structure model' 1 1 2015-05-27 3 'Structure model' 1 2 2017-08-23 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' em_3d_fitting_list 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.fitting_id' 2 3 'Structure model' '_em_software.image_processing_id' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_em_3d_fitting_list.accession_code' 6 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 7 4 'Structure model' '_em_3d_fitting_list.source_name' 8 4 'Structure model' '_em_3d_fitting_list.type' 9 4 'Structure model' '_pdbx_struct_oper_list.name' 10 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 11 4 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UF8 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-03-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4UF9 unspecified 'ELECTRON CRYO-MICROSCOPY STRUCTURE OF PB1-P62 TYPE T FILAMENTS' EMDB EMD-2936 'associated EM volume' . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ciuffa, R.' 1 'Lamark, T.' 2 'Tarafder, A.' 3 'Guesdon, A.' 4 'Rybina, S.' 5 'Hagen, W.J.H.' 6 'Johansen, T.' 7 'Sachse, C.' 8 # _citation.id primary _citation.title 'The Selective Autophagy Receptor P62 Forms a Flexible Filamentous Helical Scaffold.' _citation.journal_abbrev 'Cell Rep.' _citation.journal_volume 11 _citation.page_first 748 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2211-1247 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25921531 _citation.pdbx_database_id_DOI 10.1016/J.CELREP.2015.03.062 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ciuffa, R.' 1 ? primary 'Lamark, T.' 2 ? primary 'Tarafder, A.K.' 3 ? primary 'Guesdon, A.' 4 ? primary 'Rybina, S.' 5 ? primary 'Hagen, W.J.H.' 6 ? primary 'Johansen, T.' 7 ? primary 'Sachse, C.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description SEQUESTOSOME-1 _entity.formula_weight 11120.575 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PB1 DOMAIN, RESIDUES 3-102' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;EBI3-ASSOCIATED PROTEIN OF 60 KDA, EBIAP, P60, PHOSPHOTYROSINE-INDEPENDENT LIGAND FOR THE LCK SH2 DOMAIN OF 62 KDA, UBIQUITIN-BINDING PROTEIN P62 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSDEE LTMAMSYVKDDIFRIYIKEK ; _entity_poly.pdbx_seq_one_letter_code_can ;SLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSDEE LTMAMSYVKDDIFRIYIKEK ; _entity_poly.pdbx_strand_id A,B,C,I _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 THR n 1 4 VAL n 1 5 LYS n 1 6 ALA n 1 7 TYR n 1 8 LEU n 1 9 LEU n 1 10 GLY n 1 11 LYS n 1 12 GLU n 1 13 ASP n 1 14 ALA n 1 15 ALA n 1 16 ARG n 1 17 GLU n 1 18 ILE n 1 19 ARG n 1 20 ARG n 1 21 PHE n 1 22 SER n 1 23 PHE n 1 24 CYS n 1 25 CYS n 1 26 SER n 1 27 PRO n 1 28 GLU n 1 29 PRO n 1 30 GLU n 1 31 ALA n 1 32 GLU n 1 33 ALA n 1 34 GLU n 1 35 ALA n 1 36 ALA n 1 37 ALA n 1 38 GLY n 1 39 PRO n 1 40 GLY n 1 41 PRO n 1 42 CYS n 1 43 GLU n 1 44 ARG n 1 45 LEU n 1 46 LEU n 1 47 SER n 1 48 ARG n 1 49 VAL n 1 50 ALA n 1 51 ALA n 1 52 LEU n 1 53 PHE n 1 54 PRO n 1 55 ALA n 1 56 LEU n 1 57 ARG n 1 58 PRO n 1 59 GLY n 1 60 GLY n 1 61 PHE n 1 62 GLN n 1 63 ALA n 1 64 HIS n 1 65 TYR n 1 66 ARG n 1 67 ASP n 1 68 GLU n 1 69 ASP n 1 70 GLY n 1 71 ASP n 1 72 LEU n 1 73 VAL n 1 74 ALA n 1 75 PHE n 1 76 SER n 1 77 SER n 1 78 ASP n 1 79 GLU n 1 80 GLU n 1 81 LEU n 1 82 THR n 1 83 MET n 1 84 ALA n 1 85 MET n 1 86 SER n 1 87 TYR n 1 88 VAL n 1 89 LYS n 1 90 ASP n 1 91 ASP n 1 92 ILE n 1 93 PHE n 1 94 ARG n 1 95 ILE n 1 96 TYR n 1 97 ILE n 1 98 LYS n 1 99 GLU n 1 100 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name POPTM-P62-PB1_K103STOP_E104STOP _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 3 3 SER SER A . n A 1 2 LEU 2 4 4 LEU LEU A . n A 1 3 THR 3 5 5 THR THR A . n A 1 4 VAL 4 6 6 VAL VAL A . n A 1 5 LYS 5 7 7 LYS LYS A . n A 1 6 ALA 6 8 8 ALA ALA A . n A 1 7 TYR 7 9 9 TYR TYR A . n A 1 8 LEU 8 10 10 LEU LEU A . n A 1 9 LEU 9 11 11 LEU LEU A . n A 1 10 GLY 10 12 12 GLY GLY A . n A 1 11 LYS 11 13 13 LYS LYS A . n A 1 12 GLU 12 14 14 GLU GLU A . n A 1 13 ASP 13 15 15 ASP ASP A . n A 1 14 ALA 14 16 16 ALA ALA A . n A 1 15 ALA 15 17 17 ALA ALA A . n A 1 16 ARG 16 18 18 ARG ARG A . n A 1 17 GLU 17 19 19 GLU GLU A . n A 1 18 ILE 18 20 20 ILE ILE A . n A 1 19 ARG 19 21 21 ARG ARG A . n A 1 20 ARG 20 22 22 ARG ARG A . n A 1 21 PHE 21 23 23 PHE PHE A . n A 1 22 SER 22 24 24 SER SER A . n A 1 23 PHE 23 25 25 PHE PHE A . n A 1 24 CYS 24 26 26 CYS CYS A . n A 1 25 CYS 25 27 27 CYS CYS A . n A 1 26 SER 26 28 28 SER SER A . n A 1 27 PRO 27 29 29 PRO PRO A . n A 1 28 GLU 28 30 30 GLU GLU A . n A 1 29 PRO 29 31 31 PRO PRO A . n A 1 30 GLU 30 32 32 GLU GLU A . n A 1 31 ALA 31 33 33 ALA ALA A . n A 1 32 GLU 32 34 34 GLU GLU A . n A 1 33 ALA 33 35 35 ALA ALA A . n A 1 34 GLU 34 36 36 GLU GLU A . n A 1 35 ALA 35 37 37 ALA ALA A . n A 1 36 ALA 36 38 38 ALA ALA A . n A 1 37 ALA 37 39 39 ALA ALA A . n A 1 38 GLY 38 40 40 GLY GLY A . n A 1 39 PRO 39 41 41 PRO PRO A . n A 1 40 GLY 40 42 42 GLY GLY A . n A 1 41 PRO 41 43 43 PRO PRO A . n A 1 42 CYS 42 44 44 CYS CYS A . n A 1 43 GLU 43 45 45 GLU GLU A . n A 1 44 ARG 44 46 46 ARG ARG A . n A 1 45 LEU 45 47 47 LEU LEU A . n A 1 46 LEU 46 48 48 LEU LEU A . n A 1 47 SER 47 49 49 SER SER A . n A 1 48 ARG 48 50 50 ARG ARG A . n A 1 49 VAL 49 51 51 VAL VAL A . n A 1 50 ALA 50 52 52 ALA ALA A . n A 1 51 ALA 51 53 53 ALA ALA A . n A 1 52 LEU 52 54 54 LEU LEU A . n A 1 53 PHE 53 55 55 PHE PHE A . n A 1 54 PRO 54 56 56 PRO PRO A . n A 1 55 ALA 55 57 57 ALA ALA A . n A 1 56 LEU 56 58 58 LEU LEU A . n A 1 57 ARG 57 59 59 ARG ARG A . n A 1 58 PRO 58 60 60 PRO PRO A . n A 1 59 GLY 59 61 61 GLY GLY A . n A 1 60 GLY 60 62 62 GLY GLY A . n A 1 61 PHE 61 63 63 PHE PHE A . n A 1 62 GLN 62 64 64 GLN GLN A . n A 1 63 ALA 63 65 65 ALA ALA A . n A 1 64 HIS 64 66 66 HIS HIS A . n A 1 65 TYR 65 67 67 TYR TYR A . n A 1 66 ARG 66 68 68 ARG ARG A . n A 1 67 ASP 67 69 69 ASP ASP A . n A 1 68 GLU 68 70 70 GLU GLU A . n A 1 69 ASP 69 71 71 ASP ASP A . n A 1 70 GLY 70 72 72 GLY GLY A . n A 1 71 ASP 71 73 73 ASP ASP A . n A 1 72 LEU 72 74 74 LEU LEU A . n A 1 73 VAL 73 75 75 VAL VAL A . n A 1 74 ALA 74 76 76 ALA ALA A . n A 1 75 PHE 75 77 77 PHE PHE A . n A 1 76 SER 76 78 78 SER SER A . n A 1 77 SER 77 79 79 SER SER A . n A 1 78 ASP 78 80 80 ASP ASP A . n A 1 79 GLU 79 81 81 GLU GLU A . n A 1 80 GLU 80 82 82 GLU GLU A . n A 1 81 LEU 81 83 83 LEU LEU A . n A 1 82 THR 82 84 84 THR THR A . n A 1 83 MET 83 85 85 MET MET A . n A 1 84 ALA 84 86 86 ALA ALA A . n A 1 85 MET 85 87 87 MET MET A . n A 1 86 SER 86 88 88 SER SER A . n A 1 87 TYR 87 89 89 TYR TYR A . n A 1 88 VAL 88 90 90 VAL VAL A . n A 1 89 LYS 89 91 91 LYS LYS A . n A 1 90 ASP 90 92 92 ASP ASP A . n A 1 91 ASP 91 93 93 ASP ASP A . n A 1 92 ILE 92 94 94 ILE ILE A . n A 1 93 PHE 93 95 95 PHE PHE A . n A 1 94 ARG 94 96 96 ARG ARG A . n A 1 95 ILE 95 97 97 ILE ILE A . n A 1 96 TYR 96 98 98 TYR TYR A . n A 1 97 ILE 97 99 99 ILE ILE A . n A 1 98 LYS 98 100 100 LYS LYS A . n A 1 99 GLU 99 101 101 GLU GLU A . n A 1 100 LYS 100 102 102 LYS LYS A . n B 1 1 SER 1 3 3 SER SER B . n B 1 2 LEU 2 4 4 LEU LEU B . n B 1 3 THR 3 5 5 THR THR B . n B 1 4 VAL 4 6 6 VAL VAL B . n B 1 5 LYS 5 7 7 LYS LYS B . n B 1 6 ALA 6 8 8 ALA ALA B . n B 1 7 TYR 7 9 9 TYR TYR B . n B 1 8 LEU 8 10 10 LEU LEU B . n B 1 9 LEU 9 11 11 LEU LEU B . n B 1 10 GLY 10 12 12 GLY GLY B . n B 1 11 LYS 11 13 13 LYS LYS B . n B 1 12 GLU 12 14 14 GLU GLU B . n B 1 13 ASP 13 15 15 ASP ASP B . n B 1 14 ALA 14 16 16 ALA ALA B . n B 1 15 ALA 15 17 17 ALA ALA B . n B 1 16 ARG 16 18 18 ARG ARG B . n B 1 17 GLU 17 19 19 GLU GLU B . n B 1 18 ILE 18 20 20 ILE ILE B . n B 1 19 ARG 19 21 21 ARG ARG B . n B 1 20 ARG 20 22 22 ARG ARG B . n B 1 21 PHE 21 23 23 PHE PHE B . n B 1 22 SER 22 24 24 SER SER B . n B 1 23 PHE 23 25 25 PHE PHE B . n B 1 24 CYS 24 26 26 CYS CYS B . n B 1 25 CYS 25 27 27 CYS CYS B . n B 1 26 SER 26 28 28 SER SER B . n B 1 27 PRO 27 29 29 PRO PRO B . n B 1 28 GLU 28 30 30 GLU GLU B . n B 1 29 PRO 29 31 31 PRO PRO B . n B 1 30 GLU 30 32 32 GLU GLU B . n B 1 31 ALA 31 33 33 ALA ALA B . n B 1 32 GLU 32 34 34 GLU GLU B . n B 1 33 ALA 33 35 35 ALA ALA B . n B 1 34 GLU 34 36 36 GLU GLU B . n B 1 35 ALA 35 37 37 ALA ALA B . n B 1 36 ALA 36 38 38 ALA ALA B . n B 1 37 ALA 37 39 39 ALA ALA B . n B 1 38 GLY 38 40 40 GLY GLY B . n B 1 39 PRO 39 41 41 PRO PRO B . n B 1 40 GLY 40 42 42 GLY GLY B . n B 1 41 PRO 41 43 43 PRO PRO B . n B 1 42 CYS 42 44 44 CYS CYS B . n B 1 43 GLU 43 45 45 GLU GLU B . n B 1 44 ARG 44 46 46 ARG ARG B . n B 1 45 LEU 45 47 47 LEU LEU B . n B 1 46 LEU 46 48 48 LEU LEU B . n B 1 47 SER 47 49 49 SER SER B . n B 1 48 ARG 48 50 50 ARG ARG B . n B 1 49 VAL 49 51 51 VAL VAL B . n B 1 50 ALA 50 52 52 ALA ALA B . n B 1 51 ALA 51 53 53 ALA ALA B . n B 1 52 LEU 52 54 54 LEU LEU B . n B 1 53 PHE 53 55 55 PHE PHE B . n B 1 54 PRO 54 56 56 PRO PRO B . n B 1 55 ALA 55 57 57 ALA ALA B . n B 1 56 LEU 56 58 58 LEU LEU B . n B 1 57 ARG 57 59 59 ARG ARG B . n B 1 58 PRO 58 60 60 PRO PRO B . n B 1 59 GLY 59 61 61 GLY GLY B . n B 1 60 GLY 60 62 62 GLY GLY B . n B 1 61 PHE 61 63 63 PHE PHE B . n B 1 62 GLN 62 64 64 GLN GLN B . n B 1 63 ALA 63 65 65 ALA ALA B . n B 1 64 HIS 64 66 66 HIS HIS B . n B 1 65 TYR 65 67 67 TYR TYR B . n B 1 66 ARG 66 68 68 ARG ARG B . n B 1 67 ASP 67 69 69 ASP ASP B . n B 1 68 GLU 68 70 70 GLU GLU B . n B 1 69 ASP 69 71 71 ASP ASP B . n B 1 70 GLY 70 72 72 GLY GLY B . n B 1 71 ASP 71 73 73 ASP ASP B . n B 1 72 LEU 72 74 74 LEU LEU B . n B 1 73 VAL 73 75 75 VAL VAL B . n B 1 74 ALA 74 76 76 ALA ALA B . n B 1 75 PHE 75 77 77 PHE PHE B . n B 1 76 SER 76 78 78 SER SER B . n B 1 77 SER 77 79 79 SER SER B . n B 1 78 ASP 78 80 80 ASP ASP B . n B 1 79 GLU 79 81 81 GLU GLU B . n B 1 80 GLU 80 82 82 GLU GLU B . n B 1 81 LEU 81 83 83 LEU LEU B . n B 1 82 THR 82 84 84 THR THR B . n B 1 83 MET 83 85 85 MET MET B . n B 1 84 ALA 84 86 86 ALA ALA B . n B 1 85 MET 85 87 87 MET MET B . n B 1 86 SER 86 88 88 SER SER B . n B 1 87 TYR 87 89 89 TYR TYR B . n B 1 88 VAL 88 90 90 VAL VAL B . n B 1 89 LYS 89 91 91 LYS LYS B . n B 1 90 ASP 90 92 92 ASP ASP B . n B 1 91 ASP 91 93 93 ASP ASP B . n B 1 92 ILE 92 94 94 ILE ILE B . n B 1 93 PHE 93 95 95 PHE PHE B . n B 1 94 ARG 94 96 96 ARG ARG B . n B 1 95 ILE 95 97 97 ILE ILE B . n B 1 96 TYR 96 98 98 TYR TYR B . n B 1 97 ILE 97 99 99 ILE ILE B . n B 1 98 LYS 98 100 100 LYS LYS B . n B 1 99 GLU 99 101 101 GLU GLU B . n B 1 100 LYS 100 102 102 LYS LYS B . n C 1 1 SER 1 3 3 SER SER C . n C 1 2 LEU 2 4 4 LEU LEU C . n C 1 3 THR 3 5 5 THR THR C . n C 1 4 VAL 4 6 6 VAL VAL C . n C 1 5 LYS 5 7 7 LYS LYS C . n C 1 6 ALA 6 8 8 ALA ALA C . n C 1 7 TYR 7 9 9 TYR TYR C . n C 1 8 LEU 8 10 10 LEU LEU C . n C 1 9 LEU 9 11 11 LEU LEU C . n C 1 10 GLY 10 12 12 GLY GLY C . n C 1 11 LYS 11 13 13 LYS LYS C . n C 1 12 GLU 12 14 14 GLU GLU C . n C 1 13 ASP 13 15 15 ASP ASP C . n C 1 14 ALA 14 16 16 ALA ALA C . n C 1 15 ALA 15 17 17 ALA ALA C . n C 1 16 ARG 16 18 18 ARG ARG C . n C 1 17 GLU 17 19 19 GLU GLU C . n C 1 18 ILE 18 20 20 ILE ILE C . n C 1 19 ARG 19 21 21 ARG ARG C . n C 1 20 ARG 20 22 22 ARG ARG C . n C 1 21 PHE 21 23 23 PHE PHE C . n C 1 22 SER 22 24 24 SER SER C . n C 1 23 PHE 23 25 25 PHE PHE C . n C 1 24 CYS 24 26 26 CYS CYS C . n C 1 25 CYS 25 27 27 CYS CYS C . n C 1 26 SER 26 28 28 SER SER C . n C 1 27 PRO 27 29 29 PRO PRO C . n C 1 28 GLU 28 30 30 GLU GLU C . n C 1 29 PRO 29 31 31 PRO PRO C . n C 1 30 GLU 30 32 32 GLU GLU C . n C 1 31 ALA 31 33 33 ALA ALA C . n C 1 32 GLU 32 34 34 GLU GLU C . n C 1 33 ALA 33 35 35 ALA ALA C . n C 1 34 GLU 34 36 36 GLU GLU C . n C 1 35 ALA 35 37 37 ALA ALA C . n C 1 36 ALA 36 38 38 ALA ALA C . n C 1 37 ALA 37 39 39 ALA ALA C . n C 1 38 GLY 38 40 40 GLY GLY C . n C 1 39 PRO 39 41 41 PRO PRO C . n C 1 40 GLY 40 42 42 GLY GLY C . n C 1 41 PRO 41 43 43 PRO PRO C . n C 1 42 CYS 42 44 44 CYS CYS C . n C 1 43 GLU 43 45 45 GLU GLU C . n C 1 44 ARG 44 46 46 ARG ARG C . n C 1 45 LEU 45 47 47 LEU LEU C . n C 1 46 LEU 46 48 48 LEU LEU C . n C 1 47 SER 47 49 49 SER SER C . n C 1 48 ARG 48 50 50 ARG ARG C . n C 1 49 VAL 49 51 51 VAL VAL C . n C 1 50 ALA 50 52 52 ALA ALA C . n C 1 51 ALA 51 53 53 ALA ALA C . n C 1 52 LEU 52 54 54 LEU LEU C . n C 1 53 PHE 53 55 55 PHE PHE C . n C 1 54 PRO 54 56 56 PRO PRO C . n C 1 55 ALA 55 57 57 ALA ALA C . n C 1 56 LEU 56 58 58 LEU LEU C . n C 1 57 ARG 57 59 59 ARG ARG C . n C 1 58 PRO 58 60 60 PRO PRO C . n C 1 59 GLY 59 61 61 GLY GLY C . n C 1 60 GLY 60 62 62 GLY GLY C . n C 1 61 PHE 61 63 63 PHE PHE C . n C 1 62 GLN 62 64 64 GLN GLN C . n C 1 63 ALA 63 65 65 ALA ALA C . n C 1 64 HIS 64 66 66 HIS HIS C . n C 1 65 TYR 65 67 67 TYR TYR C . n C 1 66 ARG 66 68 68 ARG ARG C . n C 1 67 ASP 67 69 69 ASP ASP C . n C 1 68 GLU 68 70 70 GLU GLU C . n C 1 69 ASP 69 71 71 ASP ASP C . n C 1 70 GLY 70 72 72 GLY GLY C . n C 1 71 ASP 71 73 73 ASP ASP C . n C 1 72 LEU 72 74 74 LEU LEU C . n C 1 73 VAL 73 75 75 VAL VAL C . n C 1 74 ALA 74 76 76 ALA ALA C . n C 1 75 PHE 75 77 77 PHE PHE C . n C 1 76 SER 76 78 78 SER SER C . n C 1 77 SER 77 79 79 SER SER C . n C 1 78 ASP 78 80 80 ASP ASP C . n C 1 79 GLU 79 81 81 GLU GLU C . n C 1 80 GLU 80 82 82 GLU GLU C . n C 1 81 LEU 81 83 83 LEU LEU C . n C 1 82 THR 82 84 84 THR THR C . n C 1 83 MET 83 85 85 MET MET C . n C 1 84 ALA 84 86 86 ALA ALA C . n C 1 85 MET 85 87 87 MET MET C . n C 1 86 SER 86 88 88 SER SER C . n C 1 87 TYR 87 89 89 TYR TYR C . n C 1 88 VAL 88 90 90 VAL VAL C . n C 1 89 LYS 89 91 91 LYS LYS C . n C 1 90 ASP 90 92 92 ASP ASP C . n C 1 91 ASP 91 93 93 ASP ASP C . n C 1 92 ILE 92 94 94 ILE ILE C . n C 1 93 PHE 93 95 95 PHE PHE C . n C 1 94 ARG 94 96 96 ARG ARG C . n C 1 95 ILE 95 97 97 ILE ILE C . n C 1 96 TYR 96 98 98 TYR TYR C . n C 1 97 ILE 97 99 99 ILE ILE C . n C 1 98 LYS 98 100 100 LYS LYS C . n C 1 99 GLU 99 101 101 GLU GLU C . n C 1 100 LYS 100 102 102 LYS LYS C . n D 1 1 SER 1 3 3 SER SER I . n D 1 2 LEU 2 4 4 LEU LEU I . n D 1 3 THR 3 5 5 THR THR I . n D 1 4 VAL 4 6 6 VAL VAL I . n D 1 5 LYS 5 7 7 LYS LYS I . n D 1 6 ALA 6 8 8 ALA ALA I . n D 1 7 TYR 7 9 9 TYR TYR I . n D 1 8 LEU 8 10 10 LEU LEU I . n D 1 9 LEU 9 11 11 LEU LEU I . n D 1 10 GLY 10 12 12 GLY GLY I . n D 1 11 LYS 11 13 13 LYS LYS I . n D 1 12 GLU 12 14 14 GLU GLU I . n D 1 13 ASP 13 15 15 ASP ASP I . n D 1 14 ALA 14 16 16 ALA ALA I . n D 1 15 ALA 15 17 17 ALA ALA I . n D 1 16 ARG 16 18 18 ARG ARG I . n D 1 17 GLU 17 19 19 GLU GLU I . n D 1 18 ILE 18 20 20 ILE ILE I . n D 1 19 ARG 19 21 21 ARG ARG I . n D 1 20 ARG 20 22 22 ARG ARG I . n D 1 21 PHE 21 23 23 PHE PHE I . n D 1 22 SER 22 24 24 SER SER I . n D 1 23 PHE 23 25 25 PHE PHE I . n D 1 24 CYS 24 26 26 CYS CYS I . n D 1 25 CYS 25 27 27 CYS CYS I . n D 1 26 SER 26 28 28 SER SER I . n D 1 27 PRO 27 29 29 PRO PRO I . n D 1 28 GLU 28 30 30 GLU GLU I . n D 1 29 PRO 29 31 31 PRO PRO I . n D 1 30 GLU 30 32 32 GLU GLU I . n D 1 31 ALA 31 33 33 ALA ALA I . n D 1 32 GLU 32 34 34 GLU GLU I . n D 1 33 ALA 33 35 35 ALA ALA I . n D 1 34 GLU 34 36 36 GLU GLU I . n D 1 35 ALA 35 37 37 ALA ALA I . n D 1 36 ALA 36 38 38 ALA ALA I . n D 1 37 ALA 37 39 39 ALA ALA I . n D 1 38 GLY 38 40 40 GLY GLY I . n D 1 39 PRO 39 41 41 PRO PRO I . n D 1 40 GLY 40 42 42 GLY GLY I . n D 1 41 PRO 41 43 43 PRO PRO I . n D 1 42 CYS 42 44 44 CYS CYS I . n D 1 43 GLU 43 45 45 GLU GLU I . n D 1 44 ARG 44 46 46 ARG ARG I . n D 1 45 LEU 45 47 47 LEU LEU I . n D 1 46 LEU 46 48 48 LEU LEU I . n D 1 47 SER 47 49 49 SER SER I . n D 1 48 ARG 48 50 50 ARG ARG I . n D 1 49 VAL 49 51 51 VAL VAL I . n D 1 50 ALA 50 52 52 ALA ALA I . n D 1 51 ALA 51 53 53 ALA ALA I . n D 1 52 LEU 52 54 54 LEU LEU I . n D 1 53 PHE 53 55 55 PHE PHE I . n D 1 54 PRO 54 56 56 PRO PRO I . n D 1 55 ALA 55 57 57 ALA ALA I . n D 1 56 LEU 56 58 58 LEU LEU I . n D 1 57 ARG 57 59 59 ARG ARG I . n D 1 58 PRO 58 60 60 PRO PRO I . n D 1 59 GLY 59 61 61 GLY GLY I . n D 1 60 GLY 60 62 62 GLY GLY I . n D 1 61 PHE 61 63 63 PHE PHE I . n D 1 62 GLN 62 64 64 GLN GLN I . n D 1 63 ALA 63 65 65 ALA ALA I . n D 1 64 HIS 64 66 66 HIS HIS I . n D 1 65 TYR 65 67 67 TYR TYR I . n D 1 66 ARG 66 68 68 ARG ARG I . n D 1 67 ASP 67 69 69 ASP ASP I . n D 1 68 GLU 68 70 70 GLU GLU I . n D 1 69 ASP 69 71 71 ASP ASP I . n D 1 70 GLY 70 72 72 GLY GLY I . n D 1 71 ASP 71 73 73 ASP ASP I . n D 1 72 LEU 72 74 74 LEU LEU I . n D 1 73 VAL 73 75 75 VAL VAL I . n D 1 74 ALA 74 76 76 ALA ALA I . n D 1 75 PHE 75 77 77 PHE PHE I . n D 1 76 SER 76 78 78 SER SER I . n D 1 77 SER 77 79 79 SER SER I . n D 1 78 ASP 78 80 80 ASP ASP I . n D 1 79 GLU 79 81 81 GLU GLU I . n D 1 80 GLU 80 82 82 GLU GLU I . n D 1 81 LEU 81 83 83 LEU LEU I . n D 1 82 THR 82 84 84 THR THR I . n D 1 83 MET 83 85 85 MET MET I . n D 1 84 ALA 84 86 86 ALA ALA I . n D 1 85 MET 85 87 87 MET MET I . n D 1 86 SER 86 88 88 SER SER I . n D 1 87 TYR 87 89 89 TYR TYR I . n D 1 88 VAL 88 90 90 VAL VAL I . n D 1 89 LYS 89 91 91 LYS LYS I . n D 1 90 ASP 90 92 92 ASP ASP I . n D 1 91 ASP 91 93 93 ASP ASP I . n D 1 92 ILE 92 94 94 ILE ILE I . n D 1 93 PHE 93 95 95 PHE PHE I . n D 1 94 ARG 94 96 96 ARG ARG I . n D 1 95 ILE 95 97 97 ILE ILE I . n D 1 96 TYR 96 98 98 TYR TYR I . n D 1 97 ILE 97 99 99 ILE ILE I . n D 1 98 LYS 98 100 100 LYS LYS I . n D 1 99 GLU 99 101 101 GLU GLU I . n D 1 100 LYS 100 102 102 LYS LYS I . n # _cell.entry_id 4UF8 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UF8 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 4UF8 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4UF8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 10.90 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3120 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3120 _refine_hist.d_res_high 10.90 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 4UF8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4UF8 _struct.title 'Electron cryo-microscopy structure of PB1-p62 filaments' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UF8 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, SELECTIVE AUTOPHAGY, AUTOPHAGY RECEPTOR, AUTOPHAGY SCAFFOLD, P62/SQSTM1, SINGLE-PARTICLE HELICAL RECONSTRUCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SQSTM_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q13501 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4UF8 A 1 ? 100 ? Q13501 3 ? 102 ? 3 102 2 1 4UF8 B 1 ? 100 ? Q13501 3 ? 102 ? 3 102 3 1 4UF8 C 1 ? 100 ? Q13501 3 ? 102 ? 3 102 4 1 4UF8 I 1 ? 100 ? Q13501 3 ? 102 ? 3 102 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 80 2 'helical asymmetric unit' ? tetrameric 4 3 'helical asymmetric unit, std helical frame' ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-20)' A,B,C,D 2 11 A,B,C,D 3 H A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? 0.61152704 0.79122353 0.00000000 0.00000 -0.79122353 0.61152704 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -129.90000 2 'helical symmetry operation' ? ? 0.12065663 0.99269430 0.00000000 0.00000 -0.99269430 0.12065663 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -116.91000 3 'helical symmetry operation' ? ? -0.40418396 0.91467772 0.00000000 0.00000 -0.91467772 -0.40418396 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -103.92000 4 'helical symmetry operation' ? ? -0.81522889 0.57913890 0.00000000 0.00000 -0.57913890 -0.81522889 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -90.93000 5 'helical symmetry operation' ? ? -0.99675082 0.08054686 0.00000000 0.00000 -0.08054686 -0.99675082 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -77.94000 6 'helical symmetry operation' ? ? -0.89764331 -0.44072268 0.00000000 0.00000 0.44072268 -0.89764331 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -64.95000 7 'helical symmetry operation' ? ? -0.54580951 -0.83790929 0.00000000 0.00000 0.83790929 -0.54580951 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -51.96000 8 'helical symmetry operation' ? ? -0.04030618 -0.99918738 0.00000000 0.00000 0.99918738 -0.04030618 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -38.97000 9 'helical symmetry operation' ? ? 0.47654511 -0.87915002 0.00000000 0.00000 0.87915002 0.47654511 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.98000 10 'helical symmetry operation' ? ? 0.85922788 -0.51159304 0.00000000 0.00000 0.51159304 0.85922788 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.99000 11 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 12 'helical symmetry operation' ? ? 0.85922788 0.51159304 0.00000000 0.00000 -0.51159304 0.85922788 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.99000 13 'helical symmetry operation' ? ? 0.47654511 0.87915002 0.00000000 0.00000 -0.87915002 0.47654511 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.98000 14 'helical symmetry operation' ? ? -0.04030618 0.99918738 0.00000000 0.00000 -0.99918738 -0.04030618 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 38.97000 15 'helical symmetry operation' ? ? -0.54580951 0.83790929 0.00000000 0.00000 -0.83790929 -0.54580951 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 51.96000 16 'helical symmetry operation' ? ? -0.89764331 0.44072268 0.00000000 0.00000 -0.44072268 -0.89764331 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 64.95000 17 'helical symmetry operation' ? ? -0.99675082 -0.08054686 0.00000000 0.00000 0.08054686 -0.99675082 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 77.94000 18 'helical symmetry operation' ? ? -0.81522889 -0.57913890 0.00000000 0.00000 0.57913890 -0.81522889 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 90.93000 19 'helical symmetry operation' ? ? -0.40418396 -0.91467772 0.00000000 0.00000 0.91467772 -0.40418396 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 103.92000 20 'helical symmetry operation' ? ? 0.12065663 -0.99269430 0.00000000 0.00000 0.99269430 0.12065663 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 116.91000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 40 ? PHE A 53 ? GLY A 42 PHE A 55 1 ? 14 HELX_P HELX_P2 2 SER A 77 ? VAL A 88 ? SER A 79 VAL A 90 1 ? 12 HELX_P HELX_P3 3 GLY B 40 ? PHE B 53 ? GLY B 42 PHE B 55 1 ? 14 HELX_P HELX_P4 4 SER B 77 ? VAL B 88 ? SER B 79 VAL B 90 1 ? 12 HELX_P HELX_P5 5 GLY C 40 ? PHE C 53 ? GLY C 42 PHE C 55 1 ? 14 HELX_P HELX_P6 6 SER C 77 ? VAL C 88 ? SER C 79 VAL C 90 1 ? 12 HELX_P HELX_P7 7 GLY D 40 ? PHE D 53 ? GLY I 42 PHE I 55 1 ? 14 HELX_P HELX_P8 8 SER D 77 ? VAL D 88 ? SER I 79 VAL I 90 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? BA ? 5 ? CA ? 5 ? IA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel CA 1 2 ? anti-parallel CA 2 3 ? parallel CA 3 4 ? anti-parallel CA 4 5 ? anti-parallel IA 1 2 ? anti-parallel IA 2 3 ? parallel IA 3 4 ? anti-parallel IA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 15 ? PHE A 23 ? ALA A 17 PHE A 25 AA 2 LEU A 2 ? LEU A 9 ? LEU A 4 LEU A 11 AA 3 ILE A 92 ? GLU A 99 ? ILE A 94 GLU A 101 AA 4 PHE A 61 ? ARG A 66 ? PHE A 63 ARG A 68 AA 5 LEU A 72 ? PHE A 75 ? LEU A 74 PHE A 77 BA 1 ALA B 15 ? PHE B 23 ? ALA B 17 PHE B 25 BA 2 LEU B 2 ? LEU B 9 ? LEU B 4 LEU B 11 BA 3 ILE B 92 ? GLU B 99 ? ILE B 94 GLU B 101 BA 4 PHE B 61 ? ARG B 66 ? PHE B 63 ARG B 68 BA 5 LEU B 72 ? PHE B 75 ? LEU B 74 PHE B 77 CA 1 ALA C 15 ? PHE C 23 ? ALA C 17 PHE C 25 CA 2 LEU C 2 ? LEU C 9 ? LEU C 4 LEU C 11 CA 3 ILE C 92 ? GLU C 99 ? ILE C 94 GLU C 101 CA 4 PHE C 61 ? ARG C 66 ? PHE C 63 ARG C 68 CA 5 LEU C 72 ? PHE C 75 ? LEU C 74 PHE C 77 IA 1 ALA D 15 ? PHE D 23 ? ALA I 17 PHE I 25 IA 2 LEU D 2 ? LEU D 9 ? LEU I 4 LEU I 11 IA 3 ILE D 92 ? GLU D 99 ? ILE I 94 GLU I 101 IA 4 PHE D 61 ? ARG D 66 ? PHE I 63 ARG I 68 IA 5 LEU D 72 ? PHE D 75 ? LEU I 74 PHE I 77 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 23 ? N PHE A 25 O LEU A 2 ? O LEU A 4 AA 2 3 N LYS A 5 ? N LYS A 7 O PHE A 93 ? O PHE A 95 AA 3 4 N LYS A 98 ? N LYS A 100 O GLN A 62 ? O GLN A 64 AA 4 5 N TYR A 65 ? N TYR A 67 O VAL A 73 ? O VAL A 75 BA 1 2 N PHE B 23 ? N PHE B 25 O LEU B 2 ? O LEU B 4 BA 2 3 N LYS B 5 ? N LYS B 7 O PHE B 93 ? O PHE B 95 BA 3 4 N LYS B 98 ? N LYS B 100 O GLN B 62 ? O GLN B 64 BA 4 5 N TYR B 65 ? N TYR B 67 O VAL B 73 ? O VAL B 75 CA 1 2 N PHE C 23 ? N PHE C 25 O LEU C 2 ? O LEU C 4 CA 2 3 N LYS C 5 ? N LYS C 7 O PHE C 93 ? O PHE C 95 CA 3 4 N LYS C 98 ? N LYS C 100 O GLN C 62 ? O GLN C 64 CA 4 5 N TYR C 65 ? N TYR C 67 O VAL C 73 ? O VAL C 75 IA 1 2 N PHE D 23 ? N PHE I 25 O LEU D 2 ? O LEU I 4 IA 2 3 N LYS D 5 ? N LYS I 7 O PHE D 93 ? O PHE I 95 IA 3 4 N LYS D 98 ? N LYS I 100 O GLN D 62 ? O GLN I 64 IA 4 5 N TYR D 65 ? N TYR I 67 O VAL D 73 ? O VAL I 75 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ALA 37 ? ? CA A ALA 37 ? ? C A ALA 37 ? ? 119.22 110.10 9.12 1.50 N 2 1 CB B ALA 37 ? ? CA B ALA 37 ? ? C B ALA 37 ? ? 119.19 110.10 9.09 1.50 N 3 1 CB C ALA 37 ? ? CA C ALA 37 ? ? C C ALA 37 ? ? 119.19 110.10 9.09 1.50 N 4 1 CB I ALA 37 ? ? CA I ALA 37 ? ? C I ALA 37 ? ? 119.14 110.10 9.04 1.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 17 ? ? -57.00 100.25 2 1 PRO A 41 ? ? -65.06 -172.63 3 1 PHE A 55 ? ? -118.18 72.08 4 1 ASP A 69 ? ? -105.27 -168.69 5 1 ALA A 76 ? ? -57.04 99.58 6 1 SER A 78 ? ? -167.80 32.46 7 1 ALA B 17 ? ? -57.03 100.30 8 1 PRO B 41 ? ? -65.01 -172.60 9 1 PHE B 55 ? ? -118.13 72.07 10 1 ASP B 69 ? ? -105.26 -168.64 11 1 ALA B 76 ? ? -56.96 99.52 12 1 SER B 78 ? ? -167.71 32.47 13 1 ALA C 17 ? ? -56.94 100.22 14 1 PRO C 41 ? ? -65.06 -172.61 15 1 PHE C 55 ? ? -118.17 72.08 16 1 ASP C 69 ? ? -105.28 -168.66 17 1 ALA C 76 ? ? -57.08 99.57 18 1 SER C 78 ? ? -167.75 32.44 19 1 ALA I 17 ? ? -56.97 100.25 20 1 PRO I 41 ? ? -65.09 -172.65 21 1 PHE I 55 ? ? -118.10 72.08 22 1 ASP I 69 ? ? -105.26 -168.69 23 1 ALA I 76 ? ? -57.01 99.60 24 1 SER I 78 ? ? -167.77 32.41 # _pdbx_helical_symmetry.entry_id 4UF8 _pdbx_helical_symmetry.number_of_operations 20 _pdbx_helical_symmetry.rotation_per_n_subunits -30.770000 _pdbx_helical_symmetry.rise_per_n_subunits 12.990000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4UF8 _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--RIGID BODY REFINEMENT PROTOCOL--NMR' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 2KKC _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 2KKC # _em_3d_reconstruction.entry_id 4UF8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.num_particles 50620 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'PROJECTION MATCHING' _em_3d_reconstruction.nominal_pixel_size 2.16 _em_3d_reconstruction.actual_pixel_size 2.16 _em_3d_reconstruction.resolution 10.9 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;SINGLE-PARTICLE BASED HELICAL RECONSTRUCTION USING SPRING. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2936. (DEPOSITION ID: 13197) ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 MM TRIS PH 7.5, 100 MM NACL, DTT 4 MM' _em_buffer.pH 7.5 _em_buffer.details '50 MM TRIS PH 7.5, 100 MM NACL, DTT 4 MM' # _em_entity_assembly.id 1 _em_entity_assembly.name 'PB1(1-102) DOMAIN OF P62 SQSTM1' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 4UF8 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 994 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 4UF8 _em_imaging.id 1 _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_id 1 _em_imaging.date 2014-02-21 _em_imaging.temperature ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 5000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.7 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 75000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4UF8 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- HOMEMADE PLUNGER METHOD- BACKSIDE BLOTTING,' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4UF8 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CYS N N N N 57 CYS CA C N R 58 CYS C C N N 59 CYS O O N N 60 CYS CB C N N 61 CYS SG S N N 62 CYS OXT O N N 63 CYS H H N N 64 CYS H2 H N N 65 CYS HA H N N 66 CYS HB2 H N N 67 CYS HB3 H N N 68 CYS HG H N N 69 CYS HXT H N N 70 GLN N N N N 71 GLN CA C N S 72 GLN C C N N 73 GLN O O N N 74 GLN CB C N N 75 GLN CG C N N 76 GLN CD C N N 77 GLN OE1 O N N 78 GLN NE2 N N N 79 GLN OXT O N N 80 GLN H H N N 81 GLN H2 H N N 82 GLN HA H N N 83 GLN HB2 H N N 84 GLN HB3 H N N 85 GLN HG2 H N N 86 GLN HG3 H N N 87 GLN HE21 H N N 88 GLN HE22 H N N 89 GLN HXT H N N 90 GLU N N N N 91 GLU CA C N S 92 GLU C C N N 93 GLU O O N N 94 GLU CB C N N 95 GLU CG C N N 96 GLU CD C N N 97 GLU OE1 O N N 98 GLU OE2 O N N 99 GLU OXT O N N 100 GLU H H N N 101 GLU H2 H N N 102 GLU HA H N N 103 GLU HB2 H N N 104 GLU HB3 H N N 105 GLU HG2 H N N 106 GLU HG3 H N N 107 GLU HE2 H N N 108 GLU HXT H N N 109 GLY N N N N 110 GLY CA C N N 111 GLY C C N N 112 GLY O O N N 113 GLY OXT O N N 114 GLY H H N N 115 GLY H2 H N N 116 GLY HA2 H N N 117 GLY HA3 H N N 118 GLY HXT H N N 119 HIS N N N N 120 HIS CA C N S 121 HIS C C N N 122 HIS O O N N 123 HIS CB C N N 124 HIS CG C Y N 125 HIS ND1 N Y N 126 HIS CD2 C Y N 127 HIS CE1 C Y N 128 HIS NE2 N Y N 129 HIS OXT O N N 130 HIS H H N N 131 HIS H2 H N N 132 HIS HA H N N 133 HIS HB2 H N N 134 HIS HB3 H N N 135 HIS HD1 H N N 136 HIS HD2 H N N 137 HIS HE1 H N N 138 HIS HE2 H N N 139 HIS HXT H N N 140 ILE N N N N 141 ILE CA C N S 142 ILE C C N N 143 ILE O O N N 144 ILE CB C N S 145 ILE CG1 C N N 146 ILE CG2 C N N 147 ILE CD1 C N N 148 ILE OXT O N N 149 ILE H H N N 150 ILE H2 H N N 151 ILE HA H N N 152 ILE HB H N N 153 ILE HG12 H N N 154 ILE HG13 H N N 155 ILE HG21 H N N 156 ILE HG22 H N N 157 ILE HG23 H N N 158 ILE HD11 H N N 159 ILE HD12 H N N 160 ILE HD13 H N N 161 ILE HXT H N N 162 LEU N N N N 163 LEU CA C N S 164 LEU C C N N 165 LEU O O N N 166 LEU CB C N N 167 LEU CG C N N 168 LEU CD1 C N N 169 LEU CD2 C N N 170 LEU OXT O N N 171 LEU H H N N 172 LEU H2 H N N 173 LEU HA H N N 174 LEU HB2 H N N 175 LEU HB3 H N N 176 LEU HG H N N 177 LEU HD11 H N N 178 LEU HD12 H N N 179 LEU HD13 H N N 180 LEU HD21 H N N 181 LEU HD22 H N N 182 LEU HD23 H N N 183 LEU HXT H N N 184 LYS N N N N 185 LYS CA C N S 186 LYS C C N N 187 LYS O O N N 188 LYS CB C N N 189 LYS CG C N N 190 LYS CD C N N 191 LYS CE C N N 192 LYS NZ N N N 193 LYS OXT O N N 194 LYS H H N N 195 LYS H2 H N N 196 LYS HA H N N 197 LYS HB2 H N N 198 LYS HB3 H N N 199 LYS HG2 H N N 200 LYS HG3 H N N 201 LYS HD2 H N N 202 LYS HD3 H N N 203 LYS HE2 H N N 204 LYS HE3 H N N 205 LYS HZ1 H N N 206 LYS HZ2 H N N 207 LYS HZ3 H N N 208 LYS HXT H N N 209 MET N N N N 210 MET CA C N S 211 MET C C N N 212 MET O O N N 213 MET CB C N N 214 MET CG C N N 215 MET SD S N N 216 MET CE C N N 217 MET OXT O N N 218 MET H H N N 219 MET H2 H N N 220 MET HA H N N 221 MET HB2 H N N 222 MET HB3 H N N 223 MET HG2 H N N 224 MET HG3 H N N 225 MET HE1 H N N 226 MET HE2 H N N 227 MET HE3 H N N 228 MET HXT H N N 229 PHE N N N N 230 PHE CA C N S 231 PHE C C N N 232 PHE O O N N 233 PHE CB C N N 234 PHE CG C Y N 235 PHE CD1 C Y N 236 PHE CD2 C Y N 237 PHE CE1 C Y N 238 PHE CE2 C Y N 239 PHE CZ C Y N 240 PHE OXT O N N 241 PHE H H N N 242 PHE H2 H N N 243 PHE HA H N N 244 PHE HB2 H N N 245 PHE HB3 H N N 246 PHE HD1 H N N 247 PHE HD2 H N N 248 PHE HE1 H N N 249 PHE HE2 H N N 250 PHE HZ H N N 251 PHE HXT H N N 252 PRO N N N N 253 PRO CA C N S 254 PRO C C N N 255 PRO O O N N 256 PRO CB C N N 257 PRO CG C N N 258 PRO CD C N N 259 PRO OXT O N N 260 PRO H H N N 261 PRO HA H N N 262 PRO HB2 H N N 263 PRO HB3 H N N 264 PRO HG2 H N N 265 PRO HG3 H N N 266 PRO HD2 H N N 267 PRO HD3 H N N 268 PRO HXT H N N 269 SER N N N N 270 SER CA C N S 271 SER C C N N 272 SER O O N N 273 SER CB C N N 274 SER OG O N N 275 SER OXT O N N 276 SER H H N N 277 SER H2 H N N 278 SER HA H N N 279 SER HB2 H N N 280 SER HB3 H N N 281 SER HG H N N 282 SER HXT H N N 283 THR N N N N 284 THR CA C N S 285 THR C C N N 286 THR O O N N 287 THR CB C N R 288 THR OG1 O N N 289 THR CG2 C N N 290 THR OXT O N N 291 THR H H N N 292 THR H2 H N N 293 THR HA H N N 294 THR HB H N N 295 THR HG1 H N N 296 THR HG21 H N N 297 THR HG22 H N N 298 THR HG23 H N N 299 THR HXT H N N 300 TYR N N N N 301 TYR CA C N S 302 TYR C C N N 303 TYR O O N N 304 TYR CB C N N 305 TYR CG C Y N 306 TYR CD1 C Y N 307 TYR CD2 C Y N 308 TYR CE1 C Y N 309 TYR CE2 C Y N 310 TYR CZ C Y N 311 TYR OH O N N 312 TYR OXT O N N 313 TYR H H N N 314 TYR H2 H N N 315 TYR HA H N N 316 TYR HB2 H N N 317 TYR HB3 H N N 318 TYR HD1 H N N 319 TYR HD2 H N N 320 TYR HE1 H N N 321 TYR HE2 H N N 322 TYR HH H N N 323 TYR HXT H N N 324 VAL N N N N 325 VAL CA C N S 326 VAL C C N N 327 VAL O O N N 328 VAL CB C N N 329 VAL CG1 C N N 330 VAL CG2 C N N 331 VAL OXT O N N 332 VAL H H N N 333 VAL H2 H N N 334 VAL HA H N N 335 VAL HB H N N 336 VAL HG11 H N N 337 VAL HG12 H N N 338 VAL HG13 H N N 339 VAL HG21 H N N 340 VAL HG22 H N N 341 VAL HG23 H N N 342 VAL HXT H N N 343 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 CYS N CA sing N N 54 CYS N H sing N N 55 CYS N H2 sing N N 56 CYS CA C sing N N 57 CYS CA CB sing N N 58 CYS CA HA sing N N 59 CYS C O doub N N 60 CYS C OXT sing N N 61 CYS CB SG sing N N 62 CYS CB HB2 sing N N 63 CYS CB HB3 sing N N 64 CYS SG HG sing N N 65 CYS OXT HXT sing N N 66 GLN N CA sing N N 67 GLN N H sing N N 68 GLN N H2 sing N N 69 GLN CA C sing N N 70 GLN CA CB sing N N 71 GLN CA HA sing N N 72 GLN C O doub N N 73 GLN C OXT sing N N 74 GLN CB CG sing N N 75 GLN CB HB2 sing N N 76 GLN CB HB3 sing N N 77 GLN CG CD sing N N 78 GLN CG HG2 sing N N 79 GLN CG HG3 sing N N 80 GLN CD OE1 doub N N 81 GLN CD NE2 sing N N 82 GLN NE2 HE21 sing N N 83 GLN NE2 HE22 sing N N 84 GLN OXT HXT sing N N 85 GLU N CA sing N N 86 GLU N H sing N N 87 GLU N H2 sing N N 88 GLU CA C sing N N 89 GLU CA CB sing N N 90 GLU CA HA sing N N 91 GLU C O doub N N 92 GLU C OXT sing N N 93 GLU CB CG sing N N 94 GLU CB HB2 sing N N 95 GLU CB HB3 sing N N 96 GLU CG CD sing N N 97 GLU CG HG2 sing N N 98 GLU CG HG3 sing N N 99 GLU CD OE1 doub N N 100 GLU CD OE2 sing N N 101 GLU OE2 HE2 sing N N 102 GLU OXT HXT sing N N 103 GLY N CA sing N N 104 GLY N H sing N N 105 GLY N H2 sing N N 106 GLY CA C sing N N 107 GLY CA HA2 sing N N 108 GLY CA HA3 sing N N 109 GLY C O doub N N 110 GLY C OXT sing N N 111 GLY OXT HXT sing N N 112 HIS N CA sing N N 113 HIS N H sing N N 114 HIS N H2 sing N N 115 HIS CA C sing N N 116 HIS CA CB sing N N 117 HIS CA HA sing N N 118 HIS C O doub N N 119 HIS C OXT sing N N 120 HIS CB CG sing N N 121 HIS CB HB2 sing N N 122 HIS CB HB3 sing N N 123 HIS CG ND1 sing Y N 124 HIS CG CD2 doub Y N 125 HIS ND1 CE1 doub Y N 126 HIS ND1 HD1 sing N N 127 HIS CD2 NE2 sing Y N 128 HIS CD2 HD2 sing N N 129 HIS CE1 NE2 sing Y N 130 HIS CE1 HE1 sing N N 131 HIS NE2 HE2 sing N N 132 HIS OXT HXT sing N N 133 ILE N CA sing N N 134 ILE N H sing N N 135 ILE N H2 sing N N 136 ILE CA C sing N N 137 ILE CA CB sing N N 138 ILE CA HA sing N N 139 ILE C O doub N N 140 ILE C OXT sing N N 141 ILE CB CG1 sing N N 142 ILE CB CG2 sing N N 143 ILE CB HB sing N N 144 ILE CG1 CD1 sing N N 145 ILE CG1 HG12 sing N N 146 ILE CG1 HG13 sing N N 147 ILE CG2 HG21 sing N N 148 ILE CG2 HG22 sing N N 149 ILE CG2 HG23 sing N N 150 ILE CD1 HD11 sing N N 151 ILE CD1 HD12 sing N N 152 ILE CD1 HD13 sing N N 153 ILE OXT HXT sing N N 154 LEU N CA sing N N 155 LEU N H sing N N 156 LEU N H2 sing N N 157 LEU CA C sing N N 158 LEU CA CB sing N N 159 LEU CA HA sing N N 160 LEU C O doub N N 161 LEU C OXT sing N N 162 LEU CB CG sing N N 163 LEU CB HB2 sing N N 164 LEU CB HB3 sing N N 165 LEU CG CD1 sing N N 166 LEU CG CD2 sing N N 167 LEU CG HG sing N N 168 LEU CD1 HD11 sing N N 169 LEU CD1 HD12 sing N N 170 LEU CD1 HD13 sing N N 171 LEU CD2 HD21 sing N N 172 LEU CD2 HD22 sing N N 173 LEU CD2 HD23 sing N N 174 LEU OXT HXT sing N N 175 LYS N CA sing N N 176 LYS N H sing N N 177 LYS N H2 sing N N 178 LYS CA C sing N N 179 LYS CA CB sing N N 180 LYS CA HA sing N N 181 LYS C O doub N N 182 LYS C OXT sing N N 183 LYS CB CG sing N N 184 LYS CB HB2 sing N N 185 LYS CB HB3 sing N N 186 LYS CG CD sing N N 187 LYS CG HG2 sing N N 188 LYS CG HG3 sing N N 189 LYS CD CE sing N N 190 LYS CD HD2 sing N N 191 LYS CD HD3 sing N N 192 LYS CE NZ sing N N 193 LYS CE HE2 sing N N 194 LYS CE HE3 sing N N 195 LYS NZ HZ1 sing N N 196 LYS NZ HZ2 sing N N 197 LYS NZ HZ3 sing N N 198 LYS OXT HXT sing N N 199 MET N CA sing N N 200 MET N H sing N N 201 MET N H2 sing N N 202 MET CA C sing N N 203 MET CA CB sing N N 204 MET CA HA sing N N 205 MET C O doub N N 206 MET C OXT sing N N 207 MET CB CG sing N N 208 MET CB HB2 sing N N 209 MET CB HB3 sing N N 210 MET CG SD sing N N 211 MET CG HG2 sing N N 212 MET CG HG3 sing N N 213 MET SD CE sing N N 214 MET CE HE1 sing N N 215 MET CE HE2 sing N N 216 MET CE HE3 sing N N 217 MET OXT HXT sing N N 218 PHE N CA sing N N 219 PHE N H sing N N 220 PHE N H2 sing N N 221 PHE CA C sing N N 222 PHE CA CB sing N N 223 PHE CA HA sing N N 224 PHE C O doub N N 225 PHE C OXT sing N N 226 PHE CB CG sing N N 227 PHE CB HB2 sing N N 228 PHE CB HB3 sing N N 229 PHE CG CD1 doub Y N 230 PHE CG CD2 sing Y N 231 PHE CD1 CE1 sing Y N 232 PHE CD1 HD1 sing N N 233 PHE CD2 CE2 doub Y N 234 PHE CD2 HD2 sing N N 235 PHE CE1 CZ doub Y N 236 PHE CE1 HE1 sing N N 237 PHE CE2 CZ sing Y N 238 PHE CE2 HE2 sing N N 239 PHE CZ HZ sing N N 240 PHE OXT HXT sing N N 241 PRO N CA sing N N 242 PRO N CD sing N N 243 PRO N H sing N N 244 PRO CA C sing N N 245 PRO CA CB sing N N 246 PRO CA HA sing N N 247 PRO C O doub N N 248 PRO C OXT sing N N 249 PRO CB CG sing N N 250 PRO CB HB2 sing N N 251 PRO CB HB3 sing N N 252 PRO CG CD sing N N 253 PRO CG HG2 sing N N 254 PRO CG HG3 sing N N 255 PRO CD HD2 sing N N 256 PRO CD HD3 sing N N 257 PRO OXT HXT sing N N 258 SER N CA sing N N 259 SER N H sing N N 260 SER N H2 sing N N 261 SER CA C sing N N 262 SER CA CB sing N N 263 SER CA HA sing N N 264 SER C O doub N N 265 SER C OXT sing N N 266 SER CB OG sing N N 267 SER CB HB2 sing N N 268 SER CB HB3 sing N N 269 SER OG HG sing N N 270 SER OXT HXT sing N N 271 THR N CA sing N N 272 THR N H sing N N 273 THR N H2 sing N N 274 THR CA C sing N N 275 THR CA CB sing N N 276 THR CA HA sing N N 277 THR C O doub N N 278 THR C OXT sing N N 279 THR CB OG1 sing N N 280 THR CB CG2 sing N N 281 THR CB HB sing N N 282 THR OG1 HG1 sing N N 283 THR CG2 HG21 sing N N 284 THR CG2 HG22 sing N N 285 THR CG2 HG23 sing N N 286 THR OXT HXT sing N N 287 TYR N CA sing N N 288 TYR N H sing N N 289 TYR N H2 sing N N 290 TYR CA C sing N N 291 TYR CA CB sing N N 292 TYR CA HA sing N N 293 TYR C O doub N N 294 TYR C OXT sing N N 295 TYR CB CG sing N N 296 TYR CB HB2 sing N N 297 TYR CB HB3 sing N N 298 TYR CG CD1 doub Y N 299 TYR CG CD2 sing Y N 300 TYR CD1 CE1 sing Y N 301 TYR CD1 HD1 sing N N 302 TYR CD2 CE2 doub Y N 303 TYR CD2 HD2 sing N N 304 TYR CE1 CZ doub Y N 305 TYR CE1 HE1 sing N N 306 TYR CE2 CZ sing Y N 307 TYR CE2 HE2 sing N N 308 TYR CZ OH sing N N 309 TYR OH HH sing N N 310 TYR OXT HXT sing N N 311 VAL N CA sing N N 312 VAL N H sing N N 313 VAL N H2 sing N N 314 VAL CA C sing N N 315 VAL CA CB sing N N 316 VAL CA HA sing N N 317 VAL C O doub N N 318 VAL C OXT sing N N 319 VAL CB CG1 sing N N 320 VAL CB CG2 sing N N 321 VAL CB HB sing N N 322 VAL CG1 HG11 sing N N 323 VAL CG1 HG12 sing N N 324 VAL CG1 HG13 sing N N 325 VAL CG2 HG21 sing N N 326 VAL CG2 HG22 sing N N 327 VAL CG2 HG23 sing N N 328 VAL OXT HXT sing N N 329 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTFFIND, CONVOLUTION IMAGES WIENER FILTER RECONSTRUCTION' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 15 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'FEI FALCON II (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 'UCSF Chimera' ? 'MODEL FITTING' ? ? ? 1 2 SPRING ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.25 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2KKC # _atom_sites.entry_id 4UF8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_