data_5A79 # _entry.id 5A79 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5A79 PDBE EBI-64231 WWPDB D_1290064231 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-3073 'associated EM volume' . PDB 5A7A unspecified 'NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY CRYO-EM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5A79 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-07-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clare, D.K.' 1 'Pechnikova, E.' 2 'Skurat, E.' 3 'Makarov, V.' 4 'Sokolova, O.S.' 5 'Solovyev, A.G.' 6 'V Orlova, E.' 7 # _citation.id primary _citation.title 'Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy.' _citation.journal_abbrev Structure _citation.journal_volume 23 _citation.page_first 1815 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26278173 _citation.pdbx_database_id_DOI 10.1016/J.STR.2015.06.028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Clare, D.K.' 1 primary 'Pechnikova, E.V.' 2 primary 'Skurat, E.V.' 3 primary 'Makarov, V.V.' 4 primary 'Sokolova, O.S.' 5 primary 'Solovyev, A.G.' 6 primary 'Orlova, E.V.' 7 # _cell.entry_id 5A79 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A79 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CAPSID PROTEIN' 22555.225 1 ? ? ? 'ONLY CONTAINS RESIDUES 3-131 AND 147-194 IN STRUCTURE' 2 polymer nat RNA 958.660 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BETA-A PROTEIN, COAT PROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MPNVSLTAKGGGHYIEDQWDTQVVEAGVFDDWWVHVEAWNKFLDNLRGINFSVASSRSQVAEYLAALDRDLPADVDRRFA GARGQIGSPNYLPAPKFFRLDKRTIAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSAL HYQYVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA ; ;MPNVSLTAKGGGHYIEDQWDTQVVEAGVFDDWWVHVEAWNKFLDNLRGINFSVASSRSQVAEYLAALDRDLPADVDRRFA GARGQIGSPNYLPAPKFFRLDKRTIAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSAL HYQYVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA ; A ? 2 polyribonucleotide no no GAA GAA R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 ASN n 1 4 VAL n 1 5 SER n 1 6 LEU n 1 7 THR n 1 8 ALA n 1 9 LYS n 1 10 GLY n 1 11 GLY n 1 12 GLY n 1 13 HIS n 1 14 TYR n 1 15 ILE n 1 16 GLU n 1 17 ASP n 1 18 GLN n 1 19 TRP n 1 20 ASP n 1 21 THR n 1 22 GLN n 1 23 VAL n 1 24 VAL n 1 25 GLU n 1 26 ALA n 1 27 GLY n 1 28 VAL n 1 29 PHE n 1 30 ASP n 1 31 ASP n 1 32 TRP n 1 33 TRP n 1 34 VAL n 1 35 HIS n 1 36 VAL n 1 37 GLU n 1 38 ALA n 1 39 TRP n 1 40 ASN n 1 41 LYS n 1 42 PHE n 1 43 LEU n 1 44 ASP n 1 45 ASN n 1 46 LEU n 1 47 ARG n 1 48 GLY n 1 49 ILE n 1 50 ASN n 1 51 PHE n 1 52 SER n 1 53 VAL n 1 54 ALA n 1 55 SER n 1 56 SER n 1 57 ARG n 1 58 SER n 1 59 GLN n 1 60 VAL n 1 61 ALA n 1 62 GLU n 1 63 TYR n 1 64 LEU n 1 65 ALA n 1 66 ALA n 1 67 LEU n 1 68 ASP n 1 69 ARG n 1 70 ASP n 1 71 LEU n 1 72 PRO n 1 73 ALA n 1 74 ASP n 1 75 VAL n 1 76 ASP n 1 77 ARG n 1 78 ARG n 1 79 PHE n 1 80 ALA n 1 81 GLY n 1 82 ALA n 1 83 ARG n 1 84 GLY n 1 85 GLN n 1 86 ILE n 1 87 GLY n 1 88 SER n 1 89 PRO n 1 90 ASN n 1 91 TYR n 1 92 LEU n 1 93 PRO n 1 94 ALA n 1 95 PRO n 1 96 LYS n 1 97 PHE n 1 98 PHE n 1 99 ARG n 1 100 LEU n 1 101 ASP n 1 102 LYS n 1 103 ARG n 1 104 THR n 1 105 ILE n 1 106 ALA n 1 107 GLU n 1 108 LEU n 1 109 THR n 1 110 ARG n 1 111 LEU n 1 112 SER n 1 113 ARG n 1 114 LEU n 1 115 THR n 1 116 ASP n 1 117 GLN n 1 118 PRO n 1 119 HIS n 1 120 ASN n 1 121 ASN n 1 122 ARG n 1 123 ASP n 1 124 ILE n 1 125 GLU n 1 126 LEU n 1 127 ASN n 1 128 ARG n 1 129 ALA n 1 130 LYS n 1 131 ARG n 1 132 ALA n 1 133 THR n 1 134 THR n 1 135 ASN n 1 136 PRO n 1 137 SER n 1 138 PRO n 1 139 PRO n 1 140 ALA n 1 141 GLN n 1 142 ALA n 1 143 PRO n 1 144 SER n 1 145 GLU n 1 146 ASN n 1 147 LEU n 1 148 THR n 1 149 LEU n 1 150 ARG n 1 151 ASP n 1 152 VAL n 1 153 GLN n 1 154 PRO n 1 155 LEU n 1 156 LYS n 1 157 ASP n 1 158 SER n 1 159 ALA n 1 160 LEU n 1 161 HIS n 1 162 TYR n 1 163 GLN n 1 164 TYR n 1 165 VAL n 1 166 LEU n 1 167 ILE n 1 168 ASP n 1 169 LEU n 1 170 GLN n 1 171 SER n 1 172 ALA n 1 173 ARG n 1 174 LEU n 1 175 PRO n 1 176 VAL n 1 177 TYR n 1 178 THR n 1 179 ARG n 1 180 LYS n 1 181 THR n 1 182 PHE n 1 183 GLU n 1 184 ARG n 1 185 GLU n 1 186 LEU n 1 187 ALA n 1 188 LEU n 1 189 GLU n 1 190 TRP n 1 191 ILE n 1 192 ILE n 1 193 PRO n 1 194 ASP n 1 195 ALA n 1 196 GLU n 1 197 GLU n 1 198 ALA n 2 1 G n 2 2 A n 2 3 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BARLEY STRIPE MOSAIC VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12327 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc PV-328 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'AGROBACTERIUM TUMEFACIENS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 358 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain GV3101 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'PURIFIED FROM NICOTIANA BENTHAMIANA INFECTED PLANTS' # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'TOBACCO MOSAIC VIRUS (STRAIN OM)' _entity_src_nat.pdbx_ncbi_taxonomy_id 12251 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP CAPSD_BSMV 1 ? ? P04866 ? 2 PDB 5A79 2 ? ? 5A79 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5A79 A 1 ? 198 ? P04866 1 ? 198 ? 1 198 2 2 5A79 R 1 ? 3 ? 5A79 1 ? 3 ? 1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5A79 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 5A79 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 4.10 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1448 _refine_hist.pdbx_number_atoms_nucleic_acid 67 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1515 _refine_hist.d_res_high 4.10 _refine_hist.d_res_low . # _struct.entry_id 5A79 _struct.title 'Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM' _struct.pdbx_descriptor 'CAPSID PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5A79 _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'BSMV, VIRUS, HELICAL, CRYO-EM, IMAGE PROCESSING, MSA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? GLN A 22 ? ASP A 17 GLN A 22 1 ? 6 HELX_P HELX_P2 2 ALA A 38 ? LEU A 46 ? ALA A 38 LEU A 46 1 ? 9 HELX_P HELX_P3 3 ARG A 57 ? ALA A 65 ? ARG A 57 ALA A 65 1 ? 9 HELX_P HELX_P4 4 ASP A 101 ? THR A 115 ? ASP A 101 THR A 115 1 ? 15 HELX_P HELX_P5 5 ASN A 120 ? LEU A 126 ? ASN A 120 LEU A 126 5 ? 7 HELX_P HELX_P6 6 VAL A 152 ? SER A 171 ? VAL A 152 SER A 171 1 ? 20 HELX_P HELX_P7 7 THR A 178 ? LEU A 186 ? THR A 178 LEU A 186 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 12 A . ? GLY 12 A HIS 13 A ? HIS 13 A 1 -12.24 2 ARG 47 A . ? ARG 47 A GLY 48 A ? GLY 48 A 1 4.69 3 PHE 51 A . ? PHE 51 A SER 52 A ? SER 52 A 1 3.34 4 LEU 67 A . ? LEU 67 A ASP 68 A ? ASP 68 A 1 9.71 5 VAL 75 A . ? VAL 75 A ASP 76 A ? ASP 76 A 1 8.76 6 GLY 81 A . ? GLY 81 A ALA 82 A ? ALA 82 A 1 2.98 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 34 ? HIS A 35 ? VAL A 34 HIS A 35 AA 2 PHE A 97 ? PHE A 98 ? PHE A 97 PHE A 98 AA 3 VAL A 176 ? TYR A 177 ? VAL A 176 TYR A 177 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 O VAL A 34 ? O VAL A 34 N PHE A 98 ? N PHE A 98 AA 2 3 N PHE A 97 ? N PHE A 97 O TYR A 177 ? O TYR A 177 # _database_PDB_matrix.entry_id 5A79 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5A79 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ALA 132 132 ? ? ? A . n A 1 133 THR 133 133 ? ? ? A . n A 1 134 THR 134 134 ? ? ? A . n A 1 135 ASN 135 135 ? ? ? A . n A 1 136 PRO 136 136 ? ? ? A . n A 1 137 SER 137 137 ? ? ? A . n A 1 138 PRO 138 138 ? ? ? A . n A 1 139 PRO 139 139 ? ? ? A . n A 1 140 ALA 140 140 ? ? ? A . n A 1 141 GLN 141 141 ? ? ? A . n A 1 142 ALA 142 142 ? ? ? A . n A 1 143 PRO 143 143 ? ? ? A . n A 1 144 SER 144 144 ? ? ? A . n A 1 145 GLU 145 145 ? ? ? A . n A 1 146 ASN 146 146 ? ? ? A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 HIS 161 161 161 HIS HIS A . n A 1 162 TYR 162 162 162 TYR TYR A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 TYR 164 164 164 TYR TYR A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 PHE 182 182 182 PHE PHE A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 TRP 190 190 190 TRP TRP A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 ILE 192 192 192 ILE ILE A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 ALA 195 195 ? ? ? A . n A 1 196 GLU 196 196 ? ? ? A . n A 1 197 GLU 197 197 ? ? ? A . n A 1 198 ALA 198 198 ? ? ? A . n B 2 1 G 1 1 1 G G R . n B 2 2 A 2 2 2 A A R . n B 2 3 A 3 3 3 A A R . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 222-meric _pdbx_struct_assembly.oligomeric_count 222 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111 ; _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1.00000000 -0.00000000 -0.00000000 0.00000 -0.00000000 1.00000000 -0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? -0.98997400 0.14124700 -0.00000000 277.30914 -0.14124700 -0.98997400 -0.00000000 319.68318 -0.00000000 -0.00000000 1.00000000 -65.01000 3 'helical symmetry operation' ? ? -0.91114500 0.41208700 -0.00000000 224.85864 -0.41208700 -0.91114500 -0.00000000 348.48472 -0.00000000 -0.00000000 1.00000000 -63.82800 4 'helical symmetry operation' ? ? -0.75981600 0.65013800 -0.00000000 166.45175 -0.65013800 -0.75981600 -0.00000000 361.49312 -0.00000000 -0.00000000 1.00000000 -62.64600 5 'helical symmetry operation' ? ? -0.54803000 0.83645800 -0.00000000 106.73582 -0.83645800 -0.54803000 -0.00000000 357.67333 -0.00000000 -0.00000000 1.00000000 -61.46400 6 'helical symmetry operation' ? ? -0.29263900 0.95622300 -0.00000000 50.46235 -0.95622300 -0.29263900 -0.00000000 337.32927 -0.00000000 -0.00000000 1.00000000 -60.28200 7 'helical symmetry operation' ? ? -0.01396200 0.99990300 -0.00000000 2.10895 -0.99990300 -0.01396200 -0.00000000 302.07971 -0.00000000 -0.00000000 1.00000000 -59.10000 8 'helical symmetry operation' ? ? 0.26582500 0.96402100 -0.00000000 -34.47698 -0.96402100 0.26582500 -0.00000000 254.72938 -0.00000000 -0.00000000 1.00000000 -57.91800 9 'helical symmetry operation' ? ? 0.52446200 0.85143400 -0.00000000 -56.38435 -0.85143400 0.52446200 -0.00000000 199.04590 -0.00000000 -0.00000000 1.00000000 -56.73600 10 'helical symmetry operation' ? ? 0.74136700 0.67110000 -0.00000000 -61.87002 -0.67110000 0.74136700 -0.00000000 139.45990 -0.00000000 -0.00000000 1.00000000 -55.55400 11 'helical symmetry operation' ? ? 0.89928300 0.43736700 -0.00000000 -50.49751 -0.43736700 0.89928300 -0.00000000 80.71256 -0.00000000 -0.00000000 1.00000000 -54.37200 12 'helical symmetry operation' ? ? 0.98564500 0.16883300 -0.00000000 -23.17171 -0.16883300 0.98564500 -0.00000000 27.47833 -0.00000000 -0.00000000 1.00000000 -53.19000 13 'helical symmetry operation' ? ? 0.99358000 -0.11313400 -0.00000000 17.93311 0.11313400 0.99358000 -0.00000000 -16.00704 -0.00000000 -0.00000000 1.00000000 -52.00800 14 'helical symmetry operation' ? ? 0.92245700 -0.38609900 -0.00000000 69.54630 0.38609900 0.92245700 -0.00000000 -46.28347 -0.00000000 -0.00000000 1.00000000 -50.82600 15 'helical symmetry operation' ? ? 0.77793600 -0.62834300 -0.00000000 127.56107 0.62834300 0.77793600 -0.00000000 -60.94192 -0.00000000 -0.00000000 1.00000000 -49.64400 16 'helical symmetry operation' ? ? 0.57151600 -0.82059100 -0.00000000 187.36127 0.82059100 0.57151600 -0.00000000 -58.81603 -0.00000000 -0.00000000 1.00000000 -48.46200 17 'helical symmetry operation' ? ? 0.31962100 -0.94754600 -0.00000000 244.18869 0.94754600 0.31962100 -0.00000000 -40.07496 -0.00000000 -0.00000000 1.00000000 -47.28000 18 'helical symmetry operation' ? ? 0.04229400 -0.99910500 -0.00000000 293.52166 0.99910500 0.04229400 -0.00000000 -6.20990 -0.00000000 -0.00000000 1.00000000 -46.09800 19 'helical symmetry operation' ? ? -0.23839800 -0.97116800 -0.00000000 331.43482 0.97116800 -0.23839800 -0.00000000 40.08454 -0.00000000 -0.00000000 1.00000000 -44.91600 20 'helical symmetry operation' ? ? -0.50012100 -0.86595600 -0.00000000 354.91147 0.86595600 -0.50012100 -0.00000000 95.12480 -0.00000000 -0.00000000 1.00000000 -43.73400 21 'helical symmetry operation' ? ? -0.72205000 -0.69184100 -0.00000000 362.08363 0.69184100 -0.72205000 -0.00000000 154.53140 -0.00000000 -0.00000000 1.00000000 -42.55200 22 'helical symmetry operation' ? ? -0.88652700 -0.46267700 -0.00000000 352.38061 0.46267700 -0.88652700 -0.00000000 213.57744 -0.00000000 -0.00000000 1.00000000 -41.37000 23 'helical symmetry operation' ? ? -0.98046400 -0.19669900 -0.00000000 326.57446 0.19669900 -0.98046400 -0.00000000 267.56471 -0.00000000 -0.00000000 1.00000000 -40.18800 24 'helical symmetry operation' ? ? -0.99638700 0.08493000 -0.00000000 286.71854 -0.08493000 -0.99638700 -0.00000000 312.19754 -0.00000000 -0.00000000 1.00000000 -39.00600 25 'helical symmetry operation' ? ? -0.93302900 0.35980100 -0.00000000 235.98413 -0.35980100 -0.93302900 -0.00000000 343.92455 -0.00000000 -0.00000000 1.00000000 -37.82400 26 'helical symmetry operation' ? ? -0.79543100 0.60604400 -0.00000000 178.40809 -0.60604400 -0.79543100 -0.00000000 360.22127 -0.00000000 -0.00000000 1.00000000 -36.64200 27 'helical symmetry operation' ? ? -0.59454200 0.80406400 -0.00000000 118.57166 -0.80406400 -0.59454200 -0.00000000 359.79099 -0.00000000 -0.00000000 1.00000000 -35.46000 28 'helical symmetry operation' ? ? -0.34634600 0.93810700 -0.00000000 61.23593 -0.93810700 -0.34634600 -0.00000000 342.66795 -0.00000000 -0.00000000 1.00000000 -34.27800 29 'helical symmetry operation' ? ? -0.07059200 0.99750500 -0.00000000 10.96304 -0.99750500 -0.07059200 -0.00000000 310.21461 -0.00000000 -0.00000000 1.00000000 -33.09600 30 'helical symmetry operation' ? ? 0.21077900 0.97753400 -0.00000000 -28.24690 -0.97753400 0.21077900 -0.00000000 265.01323 -0.00000000 -0.00000000 1.00000000 -31.91400 31 'helical symmetry operation' ? ? 0.47537900 0.87978100 -0.00000000 -53.27399 -0.87978100 0.47537900 -0.00000000 210.66042 -0.00000000 -0.00000000 1.00000000 -30.73200 32 'helical symmetry operation' ? ? 0.70215300 0.71202600 -0.00000000 -62.12686 -0.71202600 0.70215300 -0.00000000 151.48095 -0.00000000 -0.00000000 1.00000000 -29.55000 33 'helical symmetry operation' ? ? 0.87305800 0.48761600 -0.00000000 -54.10112 -0.48761600 0.87305800 -0.00000000 92.18364 -0.00000000 -0.00000000 1.00000000 -28.36800 34 'helical symmetry operation' ? ? 0.97449600 0.22440700 -0.00000000 -29.83536 -0.22440700 0.97449600 -0.00000000 37.48669 -0.00000000 -0.00000000 1.00000000 -27.18600 35 'helical symmetry operation' ? ? 0.99839400 -0.05665800 -0.00000000 8.73964 0.05665800 0.99839400 -0.00000000 -8.25774 -0.00000000 -0.00000000 1.00000000 -26.00400 36 'helical symmetry operation' ? ? 0.94285100 -0.33321500 -0.00000000 58.55452 0.33321500 0.94285100 -0.00000000 -41.40983 -0.00000000 -0.00000000 1.00000000 -24.82200 37 'helical symmetry operation' ? ? 0.81228700 -0.58325800 -0.00000000 115.64558 0.58325800 0.81228700 -0.00000000 -59.33173 -0.00000000 -0.00000000 1.00000000 -23.64000 38 'helical symmetry operation' ? ? 0.61709100 -0.78689200 -0.00000000 175.47017 0.78689200 0.61709100 -0.00000000 -60.59741 -0.00000000 -0.00000000 1.00000000 -22.45800 39 'helical symmetry operation' ? ? 0.37279300 -0.92791400 -0.00000000 233.26814 0.92791400 0.37279300 -0.00000000 -45.10617 -0.00000000 -0.00000000 1.00000000 -21.27600 40 'helical symmetry operation' ? ? 0.09883300 -0.99510400 -0.00000000 284.44058 0.99510400 0.09883300 -0.00000000 -14.09062 -0.00000000 -0.00000000 1.00000000 -20.09400 41 'helical symmetry operation' ? ? -0.18299100 -0.98311500 -0.00000000 324.91578 0.98311500 -0.18299100 -0.00000000 29.98138 -0.00000000 -0.00000000 1.00000000 -18.91200 42 'helical symmetry operation' ? ? -0.45025400 -0.89290000 -0.00000000 351.47320 0.89290000 -0.45025400 -0.00000000 83.60309 -0.00000000 -0.00000000 1.00000000 -17.73000 43 'helical symmetry operation' ? ? -0.68169200 -0.73163900 -0.00000000 361.99969 0.73163900 -0.68169200 -0.00000000 142.50790 -0.00000000 -0.00000000 1.00000000 -16.54800 44 'helical symmetry operation' ? ? -0.85888800 -0.51216300 -0.00000000 355.65768 0.51216300 -0.85888800 -0.00000000 202.00884 -0.00000000 -0.00000000 1.00000000 -15.36600 45 'helical symmetry operation' ? ? -0.96774400 -0.25193400 -0.00000000 332.95179 0.25193400 -0.96774400 -0.00000000 257.37152 -0.00000000 -0.00000000 1.00000000 -14.18400 46 'helical symmetry operation' ? ? -0.99959800 0.02834000 -0.00000000 295.68870 -0.02834000 -0.99959800 -0.00000000 304.19080 -0.00000000 -0.00000000 1.00000000 -13.00200 47 'helical symmetry operation' ? ? -0.95191600 0.30636000 -0.00000000 246.83337 -0.30636000 -0.95191600 -0.00000000 338.74135 -0.00000000 -0.00000000 1.00000000 -11.82000 48 'helical symmetry operation' ? ? -0.82849100 0.56000300 -0.00000000 190.27316 -0.56000300 -0.82849100 -0.00000000 358.27403 -0.00000000 -0.00000000 1.00000000 -10.63800 49 'helical symmetry operation' ? ? -0.63914400 0.76908700 -0.00000000 130.50847 -0.76908700 -0.63914400 -0.00000000 361.23466 -0.00000000 -0.00000000 1.00000000 -9.45600 50 'helical symmetry operation' ? ? -0.39894100 0.91697700 -0.00000000 72.29469 -0.91697700 -0.39894100 -0.00000000 347.38765 -0.00000000 -0.00000000 1.00000000 -8.27400 51 'helical symmetry operation' ? ? -0.12699500 0.99190300 -0.00000000 20.26381 -0.99190300 -0.12699500 -0.00000000 317.83480 -0.00000000 -0.00000000 1.00000000 -7.09200 52 'helical symmetry operation' ? ? 0.15505500 0.98790600 -0.00000000 -21.44416 -0.98790600 0.15505500 -0.00000000 274.92758 -0.00000000 -0.00000000 1.00000000 -5.91000 53 'helical symmetry operation' ? ? 0.42476800 0.90530200 -0.00000000 -49.51056 -0.90530200 0.42476800 -0.00000000 222.08006 -0.00000000 -0.00000000 1.00000000 -4.72800 54 'helical symmetry operation' ? ? 0.66068300 0.75066500 -0.00000000 -61.70221 -0.75066500 0.66068300 -0.00000000 163.49724 -0.00000000 -0.00000000 1.00000000 -3.54600 55 'helical symmetry operation' ? ? 0.84402900 0.53629800 -0.00000000 -57.04902 -0.53629800 0.84402900 -0.00000000 103.84046 -0.00000000 -0.00000000 1.00000000 -2.36400 56 'helical symmetry operation' ? ? 0.96021600 0.27925900 -0.00000000 -35.92125 -0.27925900 0.96021600 -0.00000000 47.85653 -0.00000000 -0.00000000 1.00000000 -1.18200 57 'helical symmetry operation' ? ? 0.96021600 -0.27925900 -0.00000000 47.85653 0.27925900 0.96021600 -0.00000000 -35.92125 -0.00000000 -0.00000000 1.00000000 1.18200 58 'helical symmetry operation' ? ? 0.84402900 -0.53629800 -0.00000000 103.84046 0.53629800 0.84402900 -0.00000000 -57.04902 -0.00000000 -0.00000000 1.00000000 2.36400 59 'helical symmetry operation' ? ? 0.66068300 -0.75066500 -0.00000000 163.49724 0.75066500 0.66068300 -0.00000000 -61.70221 -0.00000000 -0.00000000 1.00000000 3.54600 60 'helical symmetry operation' ? ? 0.42476800 -0.90530200 -0.00000000 222.08006 0.90530200 0.42476800 -0.00000000 -49.51056 -0.00000000 -0.00000000 1.00000000 4.72800 61 'helical symmetry operation' ? ? 0.15505500 -0.98790600 -0.00000000 274.92758 0.98790600 0.15505500 -0.00000000 -21.44416 -0.00000000 -0.00000000 1.00000000 5.91000 62 'helical symmetry operation' ? ? -0.12699500 -0.99190300 -0.00000000 317.83480 0.99190300 -0.12699500 -0.00000000 20.26381 -0.00000000 -0.00000000 1.00000000 7.09200 63 'helical symmetry operation' ? ? -0.39894100 -0.91697700 -0.00000000 347.38765 0.91697700 -0.39894100 -0.00000000 72.29469 -0.00000000 -0.00000000 1.00000000 8.27400 64 'helical symmetry operation' ? ? -0.63914400 -0.76908700 -0.00000000 361.23466 0.76908700 -0.63914400 -0.00000000 130.50847 -0.00000000 -0.00000000 1.00000000 9.45600 65 'helical symmetry operation' ? ? -0.82849100 -0.56000300 -0.00000000 358.27403 0.56000300 -0.82849100 -0.00000000 190.27316 -0.00000000 -0.00000000 1.00000000 10.63800 66 'helical symmetry operation' ? ? -0.95191600 -0.30636000 -0.00000000 338.74135 0.30636000 -0.95191600 -0.00000000 246.83337 -0.00000000 -0.00000000 1.00000000 11.82000 67 'helical symmetry operation' ? ? -0.99959800 -0.02834000 -0.00000000 304.19080 0.02834000 -0.99959800 -0.00000000 295.68870 -0.00000000 -0.00000000 1.00000000 13.00200 68 'helical symmetry operation' ? ? -0.96774400 0.25193400 -0.00000000 257.37152 -0.25193400 -0.96774400 -0.00000000 332.95179 -0.00000000 -0.00000000 1.00000000 14.18400 69 'helical symmetry operation' ? ? -0.85888800 0.51216300 -0.00000000 202.00884 -0.51216300 -0.85888800 -0.00000000 355.65768 -0.00000000 -0.00000000 1.00000000 15.36600 70 'helical symmetry operation' ? ? -0.68169200 0.73163900 -0.00000000 142.50790 -0.73163900 -0.68169200 -0.00000000 361.99969 -0.00000000 -0.00000000 1.00000000 16.54800 71 'helical symmetry operation' ? ? -0.45025400 0.89290000 -0.00000000 83.60309 -0.89290000 -0.45025400 -0.00000000 351.47320 -0.00000000 -0.00000000 1.00000000 17.73000 72 'helical symmetry operation' ? ? -0.18299100 0.98311500 -0.00000000 29.98138 -0.98311500 -0.18299100 -0.00000000 324.91578 -0.00000000 -0.00000000 1.00000000 18.91200 73 'helical symmetry operation' ? ? 0.09883300 0.99510400 -0.00000000 -14.09062 -0.99510400 0.09883300 -0.00000000 284.44058 -0.00000000 -0.00000000 1.00000000 20.09400 74 'helical symmetry operation' ? ? 0.37279300 0.92791400 -0.00000000 -45.10617 -0.92791400 0.37279300 -0.00000000 233.26814 -0.00000000 -0.00000000 1.00000000 21.27600 75 'helical symmetry operation' ? ? 0.61709100 0.78689200 -0.00000000 -60.59741 -0.78689200 0.61709100 -0.00000000 175.47017 -0.00000000 -0.00000000 1.00000000 22.45800 76 'helical symmetry operation' ? ? 0.81228700 0.58325800 -0.00000000 -59.33173 -0.58325800 0.81228700 -0.00000000 115.64558 -0.00000000 -0.00000000 1.00000000 23.64000 77 'helical symmetry operation' ? ? 0.94285100 0.33321500 -0.00000000 -41.40983 -0.33321500 0.94285100 -0.00000000 58.55452 -0.00000000 -0.00000000 1.00000000 24.82200 78 'helical symmetry operation' ? ? 0.99839400 0.05665800 -0.00000000 -8.25774 -0.05665800 0.99839400 -0.00000000 8.73964 -0.00000000 -0.00000000 1.00000000 26.00400 79 'helical symmetry operation' ? ? 0.97449600 -0.22440700 -0.00000000 37.48669 0.22440700 0.97449600 -0.00000000 -29.83536 -0.00000000 -0.00000000 1.00000000 27.18600 80 'helical symmetry operation' ? ? 0.87305800 -0.48761600 -0.00000000 92.18364 0.48761600 0.87305800 -0.00000000 -54.10112 -0.00000000 -0.00000000 1.00000000 28.36800 81 'helical symmetry operation' ? ? 0.70215300 -0.71202600 -0.00000000 151.48095 0.71202600 0.70215300 -0.00000000 -62.12686 -0.00000000 -0.00000000 1.00000000 29.55000 82 'helical symmetry operation' ? ? 0.47537900 -0.87978100 -0.00000000 210.66042 0.87978100 0.47537900 -0.00000000 -53.27399 -0.00000000 -0.00000000 1.00000000 30.73200 83 'helical symmetry operation' ? ? 0.21077900 -0.97753400 -0.00000000 265.01323 0.97753400 0.21077900 -0.00000000 -28.24690 -0.00000000 -0.00000000 1.00000000 31.91400 84 'helical symmetry operation' ? ? -0.07059200 -0.99750500 -0.00000000 310.21461 0.99750500 -0.07059200 -0.00000000 10.96304 -0.00000000 -0.00000000 1.00000000 33.09600 85 'helical symmetry operation' ? ? -0.34634600 -0.93810700 -0.00000000 342.66795 0.93810700 -0.34634600 -0.00000000 61.23593 -0.00000000 -0.00000000 1.00000000 34.27800 86 'helical symmetry operation' ? ? -0.59454200 -0.80406400 -0.00000000 359.79099 0.80406400 -0.59454200 -0.00000000 118.57166 -0.00000000 -0.00000000 1.00000000 35.46000 87 'helical symmetry operation' ? ? -0.79543100 -0.60604400 -0.00000000 360.22127 0.60604400 -0.79543100 -0.00000000 178.40809 -0.00000000 -0.00000000 1.00000000 36.64200 88 'helical symmetry operation' ? ? -0.93302900 -0.35980100 -0.00000000 343.92455 0.35980100 -0.93302900 -0.00000000 235.98413 -0.00000000 -0.00000000 1.00000000 37.82400 89 'helical symmetry operation' ? ? -0.99638700 -0.08493000 -0.00000000 312.19754 0.08493000 -0.99638700 -0.00000000 286.71854 -0.00000000 -0.00000000 1.00000000 39.00600 90 'helical symmetry operation' ? ? -0.98046400 0.19669900 -0.00000000 267.56471 -0.19669900 -0.98046400 -0.00000000 326.57446 -0.00000000 -0.00000000 1.00000000 40.18800 91 'helical symmetry operation' ? ? -0.88652700 0.46267700 -0.00000000 213.57744 -0.46267700 -0.88652700 -0.00000000 352.38061 -0.00000000 -0.00000000 1.00000000 41.37000 92 'helical symmetry operation' ? ? -0.72205000 0.69184100 -0.00000000 154.53140 -0.69184100 -0.72205000 -0.00000000 362.08363 -0.00000000 -0.00000000 1.00000000 42.55200 93 'helical symmetry operation' ? ? -0.50012100 0.86595600 -0.00000000 95.12480 -0.86595600 -0.50012100 -0.00000000 354.91147 -0.00000000 -0.00000000 1.00000000 43.73400 94 'helical symmetry operation' ? ? -0.23839800 0.97116800 -0.00000000 40.08454 -0.97116800 -0.23839800 -0.00000000 331.43482 -0.00000000 -0.00000000 1.00000000 44.91600 95 'helical symmetry operation' ? ? 0.04229400 0.99910500 -0.00000000 -6.20990 -0.99910500 0.04229400 -0.00000000 293.52166 -0.00000000 -0.00000000 1.00000000 46.09800 96 'helical symmetry operation' ? ? 0.31962100 0.94754600 -0.00000000 -40.07496 -0.94754600 0.31962100 -0.00000000 244.18869 -0.00000000 -0.00000000 1.00000000 47.28000 97 'helical symmetry operation' ? ? 0.57151600 0.82059100 -0.00000000 -58.81603 -0.82059100 0.57151600 -0.00000000 187.36127 -0.00000000 -0.00000000 1.00000000 48.46200 98 'helical symmetry operation' ? ? 0.77793600 0.62834300 -0.00000000 -60.94192 -0.62834300 0.77793600 -0.00000000 127.56107 -0.00000000 -0.00000000 1.00000000 49.64400 99 'helical symmetry operation' ? ? 0.92245700 0.38609900 -0.00000000 -46.28347 -0.38609900 0.92245700 -0.00000000 69.54630 -0.00000000 -0.00000000 1.00000000 50.82600 100 'helical symmetry operation' ? ? 0.99358000 0.11313400 -0.00000000 -16.00704 -0.11313400 0.99358000 -0.00000000 17.93311 -0.00000000 -0.00000000 1.00000000 52.00800 101 'helical symmetry operation' ? ? 0.98564500 -0.16883300 -0.00000000 27.47833 0.16883300 0.98564500 -0.00000000 -23.17171 -0.00000000 -0.00000000 1.00000000 53.19000 102 'helical symmetry operation' ? ? 0.89928300 -0.43736700 -0.00000000 80.71256 0.43736700 0.89928300 -0.00000000 -50.49751 -0.00000000 -0.00000000 1.00000000 54.37200 103 'helical symmetry operation' ? ? 0.74136700 -0.67110000 -0.00000000 139.45990 0.67110000 0.74136700 -0.00000000 -61.87002 -0.00000000 -0.00000000 1.00000000 55.55400 104 'helical symmetry operation' ? ? 0.52446200 -0.85143400 -0.00000000 199.04590 0.85143400 0.52446200 -0.00000000 -56.38435 -0.00000000 -0.00000000 1.00000000 56.73600 105 'helical symmetry operation' ? ? 0.26582500 -0.96402100 -0.00000000 254.72938 0.96402100 0.26582500 -0.00000000 -34.47698 -0.00000000 -0.00000000 1.00000000 57.91800 106 'helical symmetry operation' ? ? -0.01396200 -0.99990300 -0.00000000 302.07971 0.99990300 -0.01396200 -0.00000000 2.10895 -0.00000000 -0.00000000 1.00000000 59.10000 107 'helical symmetry operation' ? ? -0.29263900 -0.95622300 -0.00000000 337.32927 0.95622300 -0.29263900 -0.00000000 50.46235 -0.00000000 -0.00000000 1.00000000 60.28200 108 'helical symmetry operation' ? ? -0.54803000 -0.83645800 -0.00000000 357.67333 0.83645800 -0.54803000 -0.00000000 106.73582 -0.00000000 -0.00000000 1.00000000 61.46400 109 'helical symmetry operation' ? ? -0.75981600 -0.65013800 -0.00000000 361.49312 0.65013800 -0.75981600 -0.00000000 166.45175 -0.00000000 -0.00000000 1.00000000 62.64600 110 'helical symmetry operation' ? ? -0.91114500 -0.41208700 -0.00000000 348.48472 0.41208700 -0.91114500 -0.00000000 224.85864 -0.00000000 -0.00000000 1.00000000 63.82800 111 'helical symmetry operation' ? ? -0.98997400 -0.14124700 -0.00000000 319.68318 0.14124700 -0.98997400 -0.00000000 277.30914 -0.00000000 -0.00000000 1.00000000 65.01000 # _pdbx_helical_symmetry.entry_id 5A79 _pdbx_helical_symmetry.number_of_operations 111 _pdbx_helical_symmetry.rotation_per_n_subunits 1800.000000 _pdbx_helical_symmetry.rise_per_n_subunits 131.2 _pdbx_helical_symmetry.n_subunits_divisor 111 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-02 2 'Structure model' 1 1 2015-10-07 3 'Structure model' 1 2 2015-10-21 4 'Structure model' 1 3 2017-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_3d_fitting 2 4 'Structure model' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_3d_fitting.target_criteria' 2 4 'Structure model' '_em_software.image_processing_id' # _pdbx_entry_details.entry_id 5A79 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'ONLY CONTAINS RESIDUES 3-131 AND 147-194 IN STRUCTURE' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 5A79 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details ;METHOD--RIGID BODY USING CHIMERA, FOLLOWED BY FLEXIBLE FITTING IN FLEX-EM AND COOT. THEN REALSPACE REFINEMENT IN PHENIX FOLLOWED BY MANUAL ADJUSTMENT IN COOT (INTERATIVE) REFINEMENT PROTOCOL--CRYO-EM ; _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5A79 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.num_particles 2077 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'PROJECTION MATCHING' _em_3d_reconstruction.nominal_pixel_size 1 _em_3d_reconstruction.actual_pixel_size 1 _em_3d_reconstruction.resolution 4.1 _em_3d_reconstruction.magnification_calibration 'LAYER LINES' _em_3d_reconstruction.details 'DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY' _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50MM TRIS-HCL, 50MM KCL, 10MM MGCL2' _em_buffer.pH 7.5 _em_buffer.details '50MM TRIS-HCL, 50MM KCL, 10MM MGCL2' # _em_entity_assembly.id 1 _em_entity_assembly.name 'CHIMERIC BARLEY STRIPE MOSAIC VIRUS WIDE VIRION' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5A79 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 297 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 5A79 _em_imaging.id 1 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.specimen_id 1 _em_imaging.date 2012-06-01 _em_imaging.temperature 90 _em_imaging.microscope_model 'FEI TECNAI F30' _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 3500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.3 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 150000 _em_imaging.calibrated_magnification 150000 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details CARBON _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 5A79 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details ;VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 40, TEMPERATURE- 100, INSTRUMENT- HOMEMADE PLUNGER, METHOD- 3.5UL OF SAMPLE WAS ADDED TO CONTINUOUS CARBON COATED OR C-FLAT GRIDS, BLOTTED FOR 2 SECONDS AND THEN PLUNGED IN LIQUID ETHANE, ; _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5A79 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 16 ? ? 84.50 -0.60 2 1 GLU A 25 ? ? 70.78 -64.90 3 1 VAL A 28 ? ? -123.31 -59.17 4 1 ASP A 30 ? ? 80.38 0.76 5 1 GLU A 37 ? ? 51.40 15.48 6 1 SER A 55 ? ? 67.39 -7.68 7 1 ARG A 122 ? ? -57.29 -0.95 8 1 LEU A 126 ? ? -128.68 -80.68 9 1 LEU A 149 ? ? 47.83 -118.90 10 1 ARG A 150 ? ? 176.02 177.01 11 1 SER A 171 ? ? -91.40 58.41 12 1 ARG A 173 ? ? -59.52 108.20 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PRO A 118 ? ? HIS A 119 ? ? -141.96 2 1 ILE A 192 ? ? PRO A 193 ? ? -146.63 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ASP A 44 ? ? -12.91 2 1 LEU A 126 ? ? 10.21 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A ALA 132 ? A ALA 132 4 1 Y 1 A THR 133 ? A THR 133 5 1 Y 1 A THR 134 ? A THR 134 6 1 Y 1 A ASN 135 ? A ASN 135 7 1 Y 1 A PRO 136 ? A PRO 136 8 1 Y 1 A SER 137 ? A SER 137 9 1 Y 1 A PRO 138 ? A PRO 138 10 1 Y 1 A PRO 139 ? A PRO 139 11 1 Y 1 A ALA 140 ? A ALA 140 12 1 Y 1 A GLN 141 ? A GLN 141 13 1 Y 1 A ALA 142 ? A ALA 142 14 1 Y 1 A PRO 143 ? A PRO 143 15 1 Y 1 A SER 144 ? A SER 144 16 1 Y 1 A GLU 145 ? A GLU 145 17 1 Y 1 A ASN 146 ? A ASN 146 18 1 Y 1 A ALA 195 ? A ALA 195 19 1 Y 1 A GLU 196 ? A GLU 196 20 1 Y 1 A GLU 197 ? A GLU 197 21 1 Y 1 A ALA 198 ? A ALA 198 # _em_ctf_correction.id 1 _em_ctf_correction.details 'PHASE FLIPPED EACH PARTICLE' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 25 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GATAN ULTRASCAN 4000 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 EMAN ? RECONSTRUCTION ? 1 ? ? 2 IMAGIC ? RECONSTRUCTION ? 1 ? ? 3 SPIDER ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 3 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? #