data_5A96 # _entry.id 5A96 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5A96 PDBE EBI-64408 WWPDB D_1290064408 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5A8S unspecified 'CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 1' PDB 5A8T unspecified 'CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 2' PDB 5A8U unspecified 'CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA' PDB 5A8V unspecified 'CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA WITH SEMET SUBSTITUTION' PDB 5A98 unspecified 'CRYSTAL STRUCTURE OF TRICHOPLUSIA NI CPV15 POLYHEDRA' PDB 5A99 unspecified 'CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV19 POLYHEDRA' PDB 5A9A unspecified 'CRYSTAL STRUCTURE OF SIMULIUM UBIQUITUM CPV20 POLYHEDRA' PDB 5A9B unspecified 'CRYSTAL STRUCTURE OF BOMBYX MORI CPV1 POLYHEDRA BASE DOMAIN DELETED MUTANT' PDB 5A9C unspecified 'CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA BASE DOMAIN DELETED MUTANT' PDB 5A9P unspecified 'CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV18 POLYHEDRA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5A96 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-07-17 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ji, X.' 1 'Axford, D.' 2 'Owen, R.' 3 'Evans, G.' 4 'Ginn, H.M.' 5 'Sutton, G.' 6 'Stuart, D.I.' 7 # _citation.id primary _citation.title 'Polyhedra Structures and the Evolution of the Insect Viruses.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 192 _citation.page_first 88 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26291392 _citation.pdbx_database_id_DOI 10.1016/J.JSB.2015.08.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ji, X.' 1 primary 'Axford, D.' 2 primary 'Owen, R.' 3 primary 'Evans, G.' 4 primary 'Ginn, H.M.' 5 primary 'Sutton, G.' 6 primary 'Stuart, D.I.' 7 # _cell.entry_id 5A96 _cell.length_a 102.600 _cell.length_b 102.600 _cell.length_c 102.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A96 _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man POLYHEDRIN 28723.441 1 ? ? ? 'DISULFIDE BOND BETWEEN A 68 AND A 97' 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 3 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MENSARQVAQDTRELHLLQHIKSDQSYIYVFVFLYYRDHSVRVWKLTNPVSISETLDYDDLINNVNRCKSAREPAIYYRE GITGNDAGDSIIDKAYCEPVSFMIVACGDVDIQTIEVNIQGYDEIEGVGILDSNVTPPYAITATKFERKTSGGYIFYTYC GLFGHGDRGHPTMAVGVEKKNRNAFGRMHPMYVAANYKRRNFWAKKDWWFPTEGQMVEQFIKQQSIPYVTADNVMIAPCV REIRHHAHY ; _entity_poly.pdbx_seq_one_letter_code_can ;MENSARQVAQDTRELHLLQHIKSDQSYIYVFVFLYYRDHSVRVWKLTNPVSISETLDYDDLINNVNRCKSAREPAIYYRE GITGNDAGDSIIDKAYCEPVSFMIVACGDVDIQTIEVNIQGYDEIEGVGILDSNVTPPYAITATKFERKTSGGYIFYTYC GLFGHGDRGHPTMAVGVEKKNRNAFGRMHPMYVAANYKRRNFWAKKDWWFPTEGQMVEQFIKQQSIPYVTADNVMIAPCV REIRHHAHY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ASN n 1 4 SER n 1 5 ALA n 1 6 ARG n 1 7 GLN n 1 8 VAL n 1 9 ALA n 1 10 GLN n 1 11 ASP n 1 12 THR n 1 13 ARG n 1 14 GLU n 1 15 LEU n 1 16 HIS n 1 17 LEU n 1 18 LEU n 1 19 GLN n 1 20 HIS n 1 21 ILE n 1 22 LYS n 1 23 SER n 1 24 ASP n 1 25 GLN n 1 26 SER n 1 27 TYR n 1 28 ILE n 1 29 TYR n 1 30 VAL n 1 31 PHE n 1 32 VAL n 1 33 PHE n 1 34 LEU n 1 35 TYR n 1 36 TYR n 1 37 ARG n 1 38 ASP n 1 39 HIS n 1 40 SER n 1 41 VAL n 1 42 ARG n 1 43 VAL n 1 44 TRP n 1 45 LYS n 1 46 LEU n 1 47 THR n 1 48 ASN n 1 49 PRO n 1 50 VAL n 1 51 SER n 1 52 ILE n 1 53 SER n 1 54 GLU n 1 55 THR n 1 56 LEU n 1 57 ASP n 1 58 TYR n 1 59 ASP n 1 60 ASP n 1 61 LEU n 1 62 ILE n 1 63 ASN n 1 64 ASN n 1 65 VAL n 1 66 ASN n 1 67 ARG n 1 68 CYS n 1 69 LYS n 1 70 SER n 1 71 ALA n 1 72 ARG n 1 73 GLU n 1 74 PRO n 1 75 ALA n 1 76 ILE n 1 77 TYR n 1 78 TYR n 1 79 ARG n 1 80 GLU n 1 81 GLY n 1 82 ILE n 1 83 THR n 1 84 GLY n 1 85 ASN n 1 86 ASP n 1 87 ALA n 1 88 GLY n 1 89 ASP n 1 90 SER n 1 91 ILE n 1 92 ILE n 1 93 ASP n 1 94 LYS n 1 95 ALA n 1 96 TYR n 1 97 CYS n 1 98 GLU n 1 99 PRO n 1 100 VAL n 1 101 SER n 1 102 PHE n 1 103 MET n 1 104 ILE n 1 105 VAL n 1 106 ALA n 1 107 CYS n 1 108 GLY n 1 109 ASP n 1 110 VAL n 1 111 ASP n 1 112 ILE n 1 113 GLN n 1 114 THR n 1 115 ILE n 1 116 GLU n 1 117 VAL n 1 118 ASN n 1 119 ILE n 1 120 GLN n 1 121 GLY n 1 122 TYR n 1 123 ASP n 1 124 GLU n 1 125 ILE n 1 126 GLU n 1 127 GLY n 1 128 VAL n 1 129 GLY n 1 130 ILE n 1 131 LEU n 1 132 ASP n 1 133 SER n 1 134 ASN n 1 135 VAL n 1 136 THR n 1 137 PRO n 1 138 PRO n 1 139 TYR n 1 140 ALA n 1 141 ILE n 1 142 THR n 1 143 ALA n 1 144 THR n 1 145 LYS n 1 146 PHE n 1 147 GLU n 1 148 ARG n 1 149 LYS n 1 150 THR n 1 151 SER n 1 152 GLY n 1 153 GLY n 1 154 TYR n 1 155 ILE n 1 156 PHE n 1 157 TYR n 1 158 THR n 1 159 TYR n 1 160 CYS n 1 161 GLY n 1 162 LEU n 1 163 PHE n 1 164 GLY n 1 165 HIS n 1 166 GLY n 1 167 ASP n 1 168 ARG n 1 169 GLY n 1 170 HIS n 1 171 PRO n 1 172 THR n 1 173 MET n 1 174 ALA n 1 175 VAL n 1 176 GLY n 1 177 VAL n 1 178 GLU n 1 179 LYS n 1 180 LYS n 1 181 ASN n 1 182 ARG n 1 183 ASN n 1 184 ALA n 1 185 PHE n 1 186 GLY n 1 187 ARG n 1 188 MET n 1 189 HIS n 1 190 PRO n 1 191 MET n 1 192 TYR n 1 193 VAL n 1 194 ALA n 1 195 ALA n 1 196 ASN n 1 197 TYR n 1 198 LYS n 1 199 ARG n 1 200 ARG n 1 201 ASN n 1 202 PHE n 1 203 TRP n 1 204 ALA n 1 205 LYS n 1 206 LYS n 1 207 ASP n 1 208 TRP n 1 209 TRP n 1 210 PHE n 1 211 PRO n 1 212 THR n 1 213 GLU n 1 214 GLY n 1 215 GLN n 1 216 MET n 1 217 VAL n 1 218 GLU n 1 219 GLN n 1 220 PHE n 1 221 ILE n 1 222 LYS n 1 223 GLN n 1 224 GLN n 1 225 SER n 1 226 ILE n 1 227 PRO n 1 228 TYR n 1 229 VAL n 1 230 THR n 1 231 ALA n 1 232 ASP n 1 233 ASN n 1 234 VAL n 1 235 MET n 1 236 ILE n 1 237 ALA n 1 238 PRO n 1 239 CYS n 1 240 VAL n 1 241 ARG n 1 242 GLU n 1 243 ILE n 1 244 ARG n 1 245 HIS n 1 246 HIS n 1 247 ALA n 1 248 HIS n 1 249 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'LYMANTRIA DISPAR CYPOVIRUS 14' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 165429 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'FALL ARMYWORM' _entity_src_gen.pdbx_host_org_scientific_name 'SPODOPTERA FRUGIPERDA' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line SF9 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q91IE3_9REOV _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q91IE3 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5A96 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 249 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q91IE3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 249 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 249 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5A96 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 191 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q91IE3 _struct_ref_seq_dif.db_mon_id VAL _struct_ref_seq_dif.pdbx_seq_db_seq_num 191 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 191 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5A96 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 20 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.6 _exptl_crystal.density_percent_sol 22 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5A96 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 72.50 _reflns.d_resolution_high 1.91 _reflns.number_obs 12952 _reflns.number_all ? _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs 0.20 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.40 _reflns.B_iso_Wilson_estimate 10.86 _reflns.pdbx_redundancy 7.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.91 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 52.1 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.80 _reflns_shell.pdbx_redundancy 1.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5A96 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11855 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.445 _refine.ls_d_res_high 1.914 _refine.ls_percent_reflns_obs 84.57 _refine.ls_R_factor_obs 0.1369 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1325 _refine.ls_R_factor_R_free 0.1940 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.0 _refine.ls_number_reflns_R_free 831 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 13 _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.462 _refine.solvent_model_param_bsol 35.426 _refine.pdbx_solvent_vdw_probe_radii 0.50 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.29 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.15 _refine.pdbx_overall_phase_error 18.19 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2022 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 2209 _refine_hist.d_res_high 1.914 _refine_hist.d_res_low 32.445 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 2111 'X-RAY DIFFRACTION' ? f_angle_d 1.225 ? ? 2871 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.776 ? ? 772 'X-RAY DIFFRACTION' ? f_chiral_restr 0.074 ? ? 299 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 369 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.9145 2.0344 587 0.1960 27.00 0.2524 . . 44 . . 'X-RAY DIFFRACTION' . 2.0344 2.1915 1774 0.1670 82.00 0.2598 . . 124 . . 'X-RAY DIFFRACTION' . 2.1915 2.4120 2103 0.1412 98.00 0.2259 . . 165 . . 'X-RAY DIFFRACTION' . 2.4120 2.7608 2151 0.1339 100.00 0.2116 . . 169 . . 'X-RAY DIFFRACTION' . 2.7608 3.4777 2159 0.1207 100.00 0.1756 . . 166 . . 'X-RAY DIFFRACTION' . 3.4777 32.4496 2250 0.1175 100.00 0.1534 . . 163 . . # _struct.entry_id 5A96 _struct.title 'Crystal structure of Lymantria dispar CPV14 polyhedra' _struct.pdbx_descriptor POLYHEDRIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5A96 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN, INSECT VIRUS OCCLUSION BODY, MICROCRYSTAL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? SER A 23 ? SER A 4 SER A 23 1 ? 20 HELX_P HELX_P2 2 ASP A 57 ? ILE A 62 ? ASP A 57 ILE A 62 1 ? 6 HELX_P HELX_P3 3 PRO A 74 ? GLY A 84 ? PRO A 74 GLY A 84 1 ? 11 HELX_P HELX_P4 4 PRO A 137 ? ILE A 141 ? PRO A 137 ILE A 141 5 ? 5 HELX_P HELX_P5 5 THR A 142 ? PHE A 146 ? THR A 142 PHE A 146 5 ? 5 HELX_P HELX_P6 6 GLY A 166 ? HIS A 170 ? GLY A 166 HIS A 170 5 ? 5 HELX_P HELX_P7 7 TYR A 192 ? LYS A 198 ? TYR A 192 LYS A 198 1 ? 7 HELX_P HELX_P8 8 THR A 212 ? PHE A 220 ? THR A 212 PHE A 220 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 68 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 97 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 68 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 97 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.060 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 202 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 202 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 TRP _struct_mon_prot_cis.pdbx_label_seq_id_2 203 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 TRP _struct_mon_prot_cis.pdbx_auth_seq_id_2 203 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 4.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 3 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 147 ? SER A 151 ? GLU A 147 SER A 151 AA 2 TYR A 154 ? LEU A 162 ? TYR A 154 LEU A 162 AA 3 SER A 101 ? GLY A 108 ? SER A 101 GLY A 108 AA 4 ILE A 28 ? TYR A 35 ? ILE A 28 TYR A 35 AA 5 VAL A 41 ? ASN A 48 ? VAL A 41 ASN A 48 AA 6 LYS A 206 ? PHE A 210 ? LYS A 206 PHE A 210 AB 1 SER A 51 ? LEU A 56 ? SER A 51 LEU A 56 AB 2 THR A 172 ? LYS A 179 ? THR A 172 LYS A 179 AB 3 VAL A 110 ? GLN A 120 ? VAL A 110 GLN A 120 AC 1 TYR A 228 ? VAL A 229 ? TYR A 228 VAL A 229 AC 2 MET A 235 ? ILE A 236 ? MET A 235 ILE A 236 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 151 ? N SER A 151 O TYR A 154 ? O TYR A 154 AA 2 3 N GLY A 161 ? N GLY A 161 O PHE A 102 ? O PHE A 102 AA 3 4 N CYS A 107 ? N CYS A 107 O TYR A 29 ? O TYR A 29 AA 4 5 N LEU A 34 ? N LEU A 34 O ARG A 42 ? O ARG A 42 AA 5 6 N LYS A 45 ? N LYS A 45 O LYS A 206 ? O LYS A 206 AB 1 2 N LEU A 56 ? N LEU A 56 O MET A 173 ? O MET A 173 AB 2 3 O GLU A 178 ? O GLU A 178 N ASP A 111 ? N ASP A 111 AC 1 2 N TYR A 228 ? N TYR A 228 O ILE A 236 ? O ILE A 236 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE GTP A 1250' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 ASN A 3 ? ASN A 3 . ? 17_544 ? 2 AC1 13 LYS A 22 ? LYS A 22 . ? 20_545 ? 3 AC1 13 ILE A 155 ? ILE A 155 . ? 20_545 ? 4 AC1 13 PHE A 163 ? PHE A 163 . ? 1_555 ? 5 AC1 13 GLY A 164 ? GLY A 164 . ? 1_555 ? 6 AC1 13 HIS A 165 ? HIS A 165 . ? 1_555 ? 7 AC1 13 GLY A 166 ? GLY A 166 . ? 1_555 ? 8 AC1 13 ARG A 168 ? ARG A 168 . ? 1_555 ? 9 AC1 13 GLY A 169 ? GLY A 169 . ? 1_555 ? 10 AC1 13 ARG A 182 ? ARG A 182 . ? 20_545 ? 11 AC1 13 ARG A 241 ? ARG A 241 . ? 18_555 ? 12 AC1 13 HIS A 248 ? HIS A 248 . ? 20_545 ? 13 AC1 13 HOH C . ? HOH A 2112 . ? 1_555 ? # _database_PDB_matrix.entry_id 5A96 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5A96 _atom_sites.fract_transf_matrix[1][1] 0.009747 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009747 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009747 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 TYR 159 159 159 TYR TYR A . n A 1 160 CYS 160 160 160 CYS CYS A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 HIS 170 170 170 HIS HIS A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 MET 173 173 173 MET MET A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 ASN 181 181 181 ASN ASN A . n A 1 182 ARG 182 182 182 ARG ARG A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 PHE 185 185 185 PHE PHE A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 MET 188 188 188 MET MET A . n A 1 189 HIS 189 189 189 HIS HIS A . n A 1 190 PRO 190 190 190 PRO PRO A . n A 1 191 MET 191 191 191 MET MET A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 TYR 197 197 197 TYR TYR A . n A 1 198 LYS 198 198 198 LYS LYS A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 ASN 201 201 201 ASN ASN A . n A 1 202 PHE 202 202 202 PHE PHE A . n A 1 203 TRP 203 203 203 TRP TRP A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 LYS 205 205 205 LYS LYS A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 TRP 208 208 208 TRP TRP A . n A 1 209 TRP 209 209 209 TRP TRP A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 PRO 211 211 211 PRO PRO A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 GLN 215 215 215 GLN GLN A . n A 1 216 MET 216 216 216 MET MET A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 GLN 219 219 219 GLN GLN A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 ILE 221 221 221 ILE ILE A . n A 1 222 LYS 222 222 222 LYS LYS A . n A 1 223 GLN 223 223 223 GLN GLN A . n A 1 224 GLN 224 224 224 GLN GLN A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 PRO 227 227 227 PRO PRO A . n A 1 228 TYR 228 228 228 TYR TYR A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 THR 230 230 230 THR THR A . n A 1 231 ALA 231 231 231 ALA ALA A . n A 1 232 ASP 232 232 232 ASP ASP A . n A 1 233 ASN 233 233 233 ASN ASN A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 MET 235 235 235 MET MET A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 PRO 238 238 238 PRO PRO A . n A 1 239 CYS 239 239 239 CYS CYS A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ARG 241 241 241 ARG ARG A . n A 1 242 GLU 242 242 242 GLU GLU A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 ARG 244 244 244 ARG ARG A . n A 1 245 HIS 245 245 245 HIS HIS A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 HIS 248 248 248 HIS HIS A . n A 1 249 TYR 249 249 249 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP 1 1250 1250 GTP GTP A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . C 3 HOH 129 2129 2129 HOH HOH A . C 3 HOH 130 2130 2130 HOH HOH A . C 3 HOH 131 2131 2131 HOH HOH A . C 3 HOH 132 2132 2132 HOH HOH A . C 3 HOH 133 2133 2133 HOH HOH A . C 3 HOH 134 2134 2134 HOH HOH A . C 3 HOH 135 2135 2135 HOH HOH A . C 3 HOH 136 2136 2136 HOH HOH A . C 3 HOH 137 2137 2137 HOH HOH A . C 3 HOH 138 2138 2138 HOH HOH A . C 3 HOH 139 2139 2139 HOH HOH A . C 3 HOH 140 2140 2140 HOH HOH A . C 3 HOH 141 2141 2141 HOH HOH A . C 3 HOH 142 2142 2142 HOH HOH A . C 3 HOH 143 2143 2143 HOH HOH A . C 3 HOH 144 2144 2144 HOH HOH A . C 3 HOH 145 2145 2145 HOH HOH A . C 3 HOH 146 2146 2146 HOH HOH A . C 3 HOH 147 2147 2147 HOH HOH A . C 3 HOH 148 2148 2148 HOH HOH A . C 3 HOH 149 2149 2149 HOH HOH A . C 3 HOH 150 2150 2150 HOH HOH A . C 3 HOH 151 2151 2151 HOH HOH A . C 3 HOH 152 2152 2152 HOH HOH A . C 3 HOH 153 2153 2153 HOH HOH A . C 3 HOH 154 2154 2154 HOH HOH A . C 3 HOH 155 2155 2155 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11530 ? 1 MORE -47.0 ? 1 'SSA (A^2)' 36140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-02 2 'Structure model' 1 1 2015-10-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 xia2 'data reduction' . ? 2 xia2 'data scaling' . ? 3 SHARP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 39 ? ? 78.10 -2.68 2 1 VAL A 50 ? ? -142.31 -24.11 3 1 LYS A 69 ? ? -154.12 75.39 4 1 ARG A 72 ? ? -155.67 -48.25 5 1 ASP A 109 ? ? -89.21 48.35 6 1 PHE A 220 ? ? -141.57 -56.05 7 1 ASN A 233 ? ? 76.05 33.04 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 water HOH #