HEADER HYDROLASE 25-MAY-15 5BN7 TITLE CRYSTAL STRUCTURE OF MALTODEXTRIN GLUCOSIDASE FROM E.COLI AT 3.7 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-GLUCOSIDASE; COMPND 5 EC: 3.2.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MALZ, B0403, JW0393; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE, GLUCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR P.K.SHUKLA,A.PASTOR,A.K.SINGH,S.SHARMA,T.P.SINGH,T.K.CHAUDHURI REVDAT 3 08-NOV-23 5BN7 1 JRNL REMARK REVDAT 2 13-JUL-16 5BN7 1 JRNL REVDAT 1 12-AUG-15 5BN7 0 JRNL AUTH A.PASTOR,A.K.SINGH,P.K.SHUKLA,M.J.EQUBAL,S.T.MALIK, JRNL AUTH 2 T.P.SINGH,T.K.CHAUDHURI JRNL TITL ROLE OF N-TERMINAL REGION OF ESCHERICHIA COLI MALTODEXTRIN JRNL TITL 2 GLUCOSIDASE IN FOLDING AND FUNCTION OF THE PROTEIN JRNL REF BIOCHIM.BIOPHYS.ACTA V.1864 1138 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27317979 JRNL DOI 10.1016/J.BBAPAP.2016.06.008 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 110.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 70.3 REMARK 3 NUMBER OF REFLECTIONS : 6156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.330 REMARK 3 R VALUE (WORKING SET) : 0.330 REMARK 3 FREE R VALUE : 0.344 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.4430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 131.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.04000 REMARK 3 B22 (A**2) : 5.04000 REMARK 3 B33 (A**2) : -10.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.861 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.845 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3720 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5059 ; 2.425 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ;11.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;35.129 ;23.756 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 570 ;22.310 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;21.883 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2952 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.525 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5BN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6156 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 110.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 2.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1JI1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 TRP A 5 REMARK 465 HIS A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 11 REMARK 465 PHE A 12 REMARK 465 VAL A 13 REMARK 465 LYS A 14 REMARK 465 GLN A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 ASP A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 LEU A 21 REMARK 465 ILE A 22 REMARK 465 THR A 23 REMARK 465 LEU A 24 REMARK 465 TRP A 25 REMARK 465 LEU A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 GLN A 33 REMARK 465 ARG A 34 REMARK 465 ILE A 35 REMARK 465 MET A 36 REMARK 465 LEU A 37 REMARK 465 ARG A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 HIS A 41 REMARK 465 ASP A 42 REMARK 465 ASN A 43 REMARK 465 GLU A 44 REMARK 465 GLU A 45 REMARK 465 MET A 46 REMARK 465 SER A 47 REMARK 465 VAL A 48 REMARK 465 PRO A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 LYS A 52 REMARK 465 GLN A 53 REMARK 465 ARG A 54 REMARK 465 SER A 55 REMARK 465 GLN A 56 REMARK 465 PRO A 57 REMARK 465 GLN A 58 REMARK 465 PRO A 59 REMARK 465 GLY A 60 REMARK 465 VAL A 61 REMARK 465 THR A 62 REMARK 465 ALA A 63 REMARK 465 TRP A 64 REMARK 465 ARG A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 ILE A 68 REMARK 465 ASP A 69 REMARK 465 LEU A 70 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 GLY A 73 REMARK 465 GLN A 74 REMARK 465 PRO A 75 REMARK 465 ARG A 76 REMARK 465 ARG A 77 REMARK 465 ARG A 78 REMARK 465 TYR A 79 REMARK 465 SER A 80 REMARK 465 PHE A 81 REMARK 465 LYS A 82 REMARK 465 LEU A 83 REMARK 465 LEU A 84 REMARK 465 TRP A 85 REMARK 465 HIS A 86 REMARK 465 ASP A 87 REMARK 465 ARG A 88 REMARK 465 GLN A 89 REMARK 465 ARG A 90 REMARK 465 TRP A 91 REMARK 465 PHE A 92 REMARK 465 THR A 93 REMARK 465 PRO A 94 REMARK 465 GLN A 95 REMARK 465 GLY A 96 REMARK 465 PHE A 97 REMARK 465 SER A 98 REMARK 465 ARG A 99 REMARK 465 MET A 100 REMARK 465 PRO A 101 REMARK 465 PRO A 102 REMARK 465 ALA A 103 REMARK 465 ARG A 104 REMARK 465 LEU A 105 REMARK 465 GLU A 106 REMARK 465 GLN A 107 REMARK 465 PHE A 108 REMARK 465 ALA A 109 REMARK 465 VAL A 110 REMARK 465 ASP A 111 REMARK 465 VAL A 112 REMARK 465 PRO A 113 REMARK 465 ASP A 114 REMARK 465 ILE A 115 REMARK 465 GLY A 116 REMARK 465 PRO A 117 REMARK 465 GLN A 118 REMARK 465 TRP A 119 REMARK 465 ALA A 120 REMARK 465 ALA A 121 REMARK 465 ASP A 122 REMARK 465 GLN A 123 REMARK 465 ILE A 124 REMARK 465 PHE A 125 REMARK 465 TYR A 126 REMARK 465 GLN A 127 REMARK 465 ILE A 128 REMARK 465 PHE A 129 REMARK 465 PRO A 130 REMARK 465 GLN A 238 REMARK 465 LEU A 239 REMARK 465 GLY A 240 REMARK 465 MET A 241 REMARK 465 ARG A 242 REMARK 465 GLN A 419 REMARK 465 THR A 420 REMARK 465 CYS A 421 REMARK 465 MET A 422 REMARK 465 ALA A 423 REMARK 465 TRP A 424 REMARK 465 MET A 425 REMARK 465 ASP A 426 REMARK 465 ASN A 427 REMARK 465 TYR A 428 REMARK 465 ARG A 429 REMARK 465 ALA A 430 REMARK 465 VAL A 601 REMARK 465 TRP A 602 REMARK 465 MET A 603 REMARK 465 ASN A 604 REMARK 465 GLY A 605 REMARK 465 SER A 606 REMARK 465 ARG A 607 REMARK 465 SER A 608 REMARK 465 HIS A 609 REMARK 465 HIS A 610 REMARK 465 HIS A 611 REMARK 465 HIS A 612 REMARK 465 HIS A 613 REMARK 465 HIS A 614 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 149 CG HIS A 149 CD2 0.059 REMARK 500 GLY A 342 N GLY A 342 CA -0.090 REMARK 500 TRP A 401 CE2 TRP A 401 CD2 0.073 REMARK 500 TRP A 401 C TRP A 401 O -0.175 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 184 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 LYS A 185 CB - CA - C ANGL. DEV. = -22.2 DEGREES REMARK 500 LEU A 290 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 LEU A 341 CA - C - N ANGL. DEV. = -23.5 DEGREES REMARK 500 LEU A 341 O - C - N ANGL. DEV. = 12.2 DEGREES REMARK 500 ALA A 378 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 GLU A 387 CB - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 PRO A 413 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 MET A 440 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 ASN A 442 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 LEU A 463 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 TRP A 501 CB - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 LYS A 522 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 LEU A 592 N - CA - CB ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO A 595 C - N - CD ANGL. DEV. = -21.8 DEGREES REMARK 500 ALA A 596 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 134 141.92 -170.78 REMARK 500 HIS A 145 7.78 83.09 REMARK 500 TYR A 147 -168.45 -168.82 REMARK 500 ALA A 169 139.16 -34.85 REMARK 500 THR A 173 -108.67 -156.69 REMARK 500 PHE A 174 73.34 71.72 REMARK 500 TYR A 175 -83.98 -109.61 REMARK 500 LYS A 210 38.30 74.11 REMARK 500 GLU A 214 -65.20 -107.95 REMARK 500 TYR A 216 -71.06 -96.24 REMARK 500 HIS A 256 154.98 -47.78 REMARK 500 TRP A 258 -42.10 -130.58 REMARK 500 HIS A 262 -4.43 83.98 REMARK 500 PRO A 273 57.52 -100.77 REMARK 500 GLU A 274 88.01 -165.12 REMARK 500 PHE A 283 -126.27 53.80 REMARK 500 ALA A 289 -151.61 -174.77 REMARK 500 ASP A 291 -71.37 -56.37 REMARK 500 SER A 307 -79.20 -134.47 REMARK 500 VAL A 309 12.15 82.58 REMARK 500 ILE A 312 -65.41 -95.37 REMARK 500 TYR A 313 -55.70 -123.27 REMARK 500 SER A 318 140.80 -38.58 REMARK 500 TRP A 328 -13.96 171.33 REMARK 500 ASN A 329 134.73 -37.27 REMARK 500 HIS A 339 -9.88 -54.49 REMARK 500 LEU A 341 161.20 -35.64 REMARK 500 ALA A 344 22.08 82.74 REMARK 500 ASP A 377 133.29 -39.57 REMARK 500 ARG A 379 -54.66 -176.74 REMARK 500 GLN A 383 11.70 -154.25 REMARK 500 ALA A 384 -50.85 67.96 REMARK 500 PRO A 399 -71.35 -59.72 REMARK 500 LEU A 404 -50.27 -125.03 REMARK 500 ASN A 406 2.94 54.69 REMARK 500 THR A 407 -173.15 -178.26 REMARK 500 TYR A 411 32.61 86.13 REMARK 500 PRO A 413 141.28 -33.37 REMARK 500 LEU A 444 -79.27 -113.88 REMARK 500 LYS A 490 -70.99 -56.57 REMARK 500 PRO A 493 35.84 -89.37 REMARK 500 PRO A 498 142.42 -39.13 REMARK 500 PRO A 500 -153.62 -92.06 REMARK 500 TRP A 501 -61.24 -137.46 REMARK 500 GLN A 506 0.53 85.65 REMARK 500 THR A 508 104.44 -55.56 REMARK 500 ALA A 509 -8.70 -59.47 REMARK 500 LEU A 513 -84.59 -122.21 REMARK 500 ARG A 528 -72.55 -120.36 REMARK 500 CYS A 532 108.81 79.39 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 171 SER A 172 143.26 REMARK 500 LYS A 204 ALA A 205 149.80 REMARK 500 PHE A 259 ASP A 260 143.29 REMARK 500 PHE A 283 SER A 284 -99.26 REMARK 500 SER A 284 ASP A 285 144.96 REMARK 500 TRP A 501 GLN A 502 -142.60 REMARK 500 GLN A 506 ASP A 507 149.78 REMARK 500 LYS A 522 LYS A 523 149.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 451 0.08 SIDE CHAIN REMARK 500 ARG A 546 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JI1 RELATED DB: PDB REMARK 900 MODEL PDB DBREF 5BN7 A 1 604 UNP P21517 MALZ_ECOLI 1 604 SEQADV 5BN7 MET A -1 UNP P21517 EXPRESSION TAG SEQADV 5BN7 GLY A 0 UNP P21517 EXPRESSION TAG SEQADV 5BN7 GLY A 605 UNP P21517 EXPRESSION TAG SEQADV 5BN7 SER A 606 UNP P21517 EXPRESSION TAG SEQADV 5BN7 ARG A 607 UNP P21517 EXPRESSION TAG SEQADV 5BN7 SER A 608 UNP P21517 EXPRESSION TAG SEQADV 5BN7 HIS A 609 UNP P21517 EXPRESSION TAG SEQADV 5BN7 HIS A 610 UNP P21517 EXPRESSION TAG SEQADV 5BN7 HIS A 611 UNP P21517 EXPRESSION TAG SEQADV 5BN7 HIS A 612 UNP P21517 EXPRESSION TAG SEQADV 5BN7 HIS A 613 UNP P21517 EXPRESSION TAG SEQADV 5BN7 HIS A 614 UNP P21517 EXPRESSION TAG SEQRES 1 A 616 MET GLY MET LEU ASN ALA TRP HIS LEU PRO VAL PRO PRO SEQRES 2 A 616 PHE VAL LYS GLN SER LYS ASP GLN LEU LEU ILE THR LEU SEQRES 3 A 616 TRP LEU THR GLY GLU ASP PRO PRO GLN ARG ILE MET LEU SEQRES 4 A 616 ARG THR GLU HIS ASP ASN GLU GLU MET SER VAL PRO MET SEQRES 5 A 616 HIS LYS GLN ARG SER GLN PRO GLN PRO GLY VAL THR ALA SEQRES 6 A 616 TRP ARG ALA ALA ILE ASP LEU SER SER GLY GLN PRO ARG SEQRES 7 A 616 ARG ARG TYR SER PHE LYS LEU LEU TRP HIS ASP ARG GLN SEQRES 8 A 616 ARG TRP PHE THR PRO GLN GLY PHE SER ARG MET PRO PRO SEQRES 9 A 616 ALA ARG LEU GLU GLN PHE ALA VAL ASP VAL PRO ASP ILE SEQRES 10 A 616 GLY PRO GLN TRP ALA ALA ASP GLN ILE PHE TYR GLN ILE SEQRES 11 A 616 PHE PRO ASP ARG PHE ALA ARG SER LEU PRO ARG GLU ALA SEQRES 12 A 616 GLU GLN ASP HIS VAL TYR TYR HIS HIS ALA ALA GLY GLN SEQRES 13 A 616 GLU ILE ILE LEU ARG ASP TRP ASP GLU PRO VAL THR ALA SEQRES 14 A 616 GLN ALA GLY GLY SER THR PHE TYR GLY GLY ASP LEU ASP SEQRES 15 A 616 GLY ILE SER GLU LYS LEU PRO TYR LEU LYS LYS LEU GLY SEQRES 16 A 616 VAL THR ALA LEU TYR LEU ASN PRO VAL PHE LYS ALA PRO SEQRES 17 A 616 SER VAL HIS LYS TYR ASP THR GLU ASP TYR ARG HIS VAL SEQRES 18 A 616 ASP PRO GLN PHE GLY GLY ASP GLY ALA LEU LEU ARG LEU SEQRES 19 A 616 ARG HIS ASN THR GLN GLN LEU GLY MET ARG LEU VAL LEU SEQRES 20 A 616 ASP GLY VAL PHE ASN HIS SER GLY ASP SER HIS ALA TRP SEQRES 21 A 616 PHE ASP ARG HIS ASN ARG GLY THR GLY GLY ALA CYS HIS SEQRES 22 A 616 ASN PRO GLU SER PRO TRP ARG ASP TRP TYR SER PHE SER SEQRES 23 A 616 ASP ASP GLY THR ALA LEU ASP TRP LEU GLY TYR ALA SER SEQRES 24 A 616 LEU PRO LYS LEU ASP TYR GLN SER GLU SER LEU VAL ASN SEQRES 25 A 616 GLU ILE TYR ARG GLY GLU ASP SER ILE VAL ARG HIS TRP SEQRES 26 A 616 LEU LYS ALA PRO TRP ASN MET ASP GLY TRP ARG LEU ASP SEQRES 27 A 616 VAL VAL HIS MET LEU GLY GLU ALA GLY GLY ALA ARG ASN SEQRES 28 A 616 ASN MET GLN HIS VAL ALA GLY ILE THR GLU ALA ALA LYS SEQRES 29 A 616 GLU THR GLN PRO GLU ALA TYR ILE VAL GLY GLU HIS PHE SEQRES 30 A 616 GLY ASP ALA ARG GLN TRP LEU GLN ALA ASP VAL GLU ASP SEQRES 31 A 616 ALA ALA MET ASN TYR ARG GLY PHE THR PHE PRO LEU TRP SEQRES 32 A 616 GLY PHE LEU ALA ASN THR ASP ILE SER TYR ASP PRO GLN SEQRES 33 A 616 GLN ILE ASP ALA GLN THR CYS MET ALA TRP MET ASP ASN SEQRES 34 A 616 TYR ARG ALA GLY LEU SER HIS GLN GLN GLN LEU ARG MET SEQRES 35 A 616 PHE ASN GLN LEU ASP SER HIS ASP THR ALA ARG PHE LYS SEQRES 36 A 616 THR LEU LEU GLY ARG ASP ILE ALA ARG LEU PRO LEU ALA SEQRES 37 A 616 VAL VAL TRP LEU PHE THR TRP PRO GLY VAL PRO CYS ILE SEQRES 38 A 616 TYR TYR GLY ASP GLU VAL GLY LEU ASP GLY LYS ASN ASP SEQRES 39 A 616 PRO PHE CYS ARG LYS PRO PHE PRO TRP GLN VAL GLU LYS SEQRES 40 A 616 GLN ASP THR ALA LEU PHE ALA LEU TYR GLN ARG MET ILE SEQRES 41 A 616 ALA LEU ARG LYS LYS SER GLN ALA LEU ARG HIS GLY GLY SEQRES 42 A 616 CYS GLN VAL LEU TYR ALA GLU ASP ASN VAL VAL VAL PHE SEQRES 43 A 616 VAL ARG VAL LEU ASN GLN GLN ARG VAL LEU VAL ALA ILE SEQRES 44 A 616 ASN ARG GLY GLU ALA CYS GLU VAL VAL LEU PRO ALA SER SEQRES 45 A 616 PRO PHE LEU ASN ALA VAL GLN TRP GLN CYS LYS GLU GLY SEQRES 46 A 616 HIS GLY GLN LEU THR ASP GLY ILE LEU ALA LEU PRO ALA SEQRES 47 A 616 ILE SER ALA THR VAL TRP MET ASN GLY SER ARG SER HIS SEQRES 48 A 616 HIS HIS HIS HIS HIS HELIX 1 AA1 LEU A 179 GLU A 184 1 6 HELIX 2 AA2 ARG A 231 THR A 236 1 6 HELIX 3 AA3 ALA A 347 GLN A 365 1 19 HELIX 4 AA4 PRO A 399 LEU A 404 5 6 HELIX 5 AA5 SER A 433 LEU A 438 1 6 HELIX 6 AA6 ARG A 451 LEU A 456 1 6 HELIX 7 AA7 ALA A 461 TRP A 469 1 9 HELIX 8 AA8 LEU A 513 ARG A 521 1 9 SHEET 1 AA1 2 PHE A 441 ASN A 442 0 SHEET 2 AA1 2 VAL A 476 PRO A 477 1 O VAL A 476 N ASN A 442 SHEET 1 AA2 2 ALA A 537 GLU A 538 0 SHEET 2 AA2 2 VAL A 541 VAL A 542 -1 O VAL A 541 N GLU A 538 SHEET 1 AA3 2 CYS A 580 LYS A 581 0 SHEET 2 AA3 2 GLN A 586 LEU A 587 -1 O GLN A 586 N LYS A 581 CISPEP 1 ALA A 151 ALA A 152 0 -6.87 CISPEP 2 ALA A 152 GLY A 153 0 -5.75 CISPEP 3 SER A 172 THR A 173 0 0.81 CISPEP 4 LYS A 191 LEU A 192 0 6.41 CISPEP 5 SER A 305 GLU A 306 0 1.58 CISPEP 6 ALA A 326 PRO A 327 0 -10.65 CISPEP 7 ASP A 492 PRO A 493 0 -2.35 CISPEP 8 HIS A 584 GLY A 585 0 -3.46 CRYST1 110.590 110.590 69.540 90.00 90.00 90.00 P 4 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014380 0.00000