data_5BYP # _entry.id 5BYP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5BYP pdb_00005byp 10.2210/pdb5byp/pdb WWPDB D_1000210793 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.details . _pdbx_database_related.db_id JCSG-417708 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5BYP _pdbx_database_status.recvd_initial_deposition_date 2015-06-10 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of an uncharacterized protein (BACEGG_01585) from Bacteroides eggerthii DSM 20697 at 2.60 A resolution' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5BYP _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.800 _cell.length_a_esd ? _cell.length_b 64.800 _cell.length_b_esd ? _cell.length_c 235.930 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Putative uncharacterized protein' _entity.formula_weight 14879.056 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GNDGGSDWVGKWQLREYQYPDGKVQKVDSIFYGFQKGSFLAYC(MSE)NKSGSYEGFYGYYKLKDDEISITLWPDNSSGN EAAHEELVNSASYKNFFGWGDTGERTFKVEELTDKK(MSE)RLNYEGTKYVFRKY ; _entity_poly.pdbx_seq_one_letter_code_can ;GNDGGSDWVGKWQLREYQYPDGKVQKVDSIFYGFQKGSFLAYCMNKSGSYEGFYGYYKLKDDEISITLWPDNSSGNEAAH EELVNSASYKNFFGWGDTGERTFKVEELTDKKMRLNYEGTKYVFRKY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-417708 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 ASP n 1 4 GLY n 1 5 GLY n 1 6 SER n 1 7 ASP n 1 8 TRP n 1 9 VAL n 1 10 GLY n 1 11 LYS n 1 12 TRP n 1 13 GLN n 1 14 LEU n 1 15 ARG n 1 16 GLU n 1 17 TYR n 1 18 GLN n 1 19 TYR n 1 20 PRO n 1 21 ASP n 1 22 GLY n 1 23 LYS n 1 24 VAL n 1 25 GLN n 1 26 LYS n 1 27 VAL n 1 28 ASP n 1 29 SER n 1 30 ILE n 1 31 PHE n 1 32 TYR n 1 33 GLY n 1 34 PHE n 1 35 GLN n 1 36 LYS n 1 37 GLY n 1 38 SER n 1 39 PHE n 1 40 LEU n 1 41 ALA n 1 42 TYR n 1 43 CYS n 1 44 MSE n 1 45 ASN n 1 46 LYS n 1 47 SER n 1 48 GLY n 1 49 SER n 1 50 TYR n 1 51 GLU n 1 52 GLY n 1 53 PHE n 1 54 TYR n 1 55 GLY n 1 56 TYR n 1 57 TYR n 1 58 LYS n 1 59 LEU n 1 60 LYS n 1 61 ASP n 1 62 ASP n 1 63 GLU n 1 64 ILE n 1 65 SER n 1 66 ILE n 1 67 THR n 1 68 LEU n 1 69 TRP n 1 70 PRO n 1 71 ASP n 1 72 ASN n 1 73 SER n 1 74 SER n 1 75 GLY n 1 76 ASN n 1 77 GLU n 1 78 ALA n 1 79 ALA n 1 80 HIS n 1 81 GLU n 1 82 GLU n 1 83 LEU n 1 84 VAL n 1 85 ASN n 1 86 SER n 1 87 ALA n 1 88 SER n 1 89 TYR n 1 90 LYS n 1 91 ASN n 1 92 PHE n 1 93 PHE n 1 94 GLY n 1 95 TRP n 1 96 GLY n 1 97 ASP n 1 98 THR n 1 99 GLY n 1 100 GLU n 1 101 ARG n 1 102 THR n 1 103 PHE n 1 104 LYS n 1 105 VAL n 1 106 GLU n 1 107 GLU n 1 108 LEU n 1 109 THR n 1 110 ASP n 1 111 LYS n 1 112 LYS n 1 113 MSE n 1 114 ARG n 1 115 LEU n 1 116 ASN n 1 117 TYR n 1 118 GLU n 1 119 GLY n 1 120 THR n 1 121 LYS n 1 122 TYR n 1 123 VAL n 1 124 PHE n 1 125 ARG n 1 126 LYS n 1 127 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 127 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACEGG_01585 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides eggerthii DSM 20697' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 483216 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B7AGQ7_9BACE _struct_ref.pdbx_db_accession B7AGQ7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NDGGSDWVGKWQLREYQYPDGKVQKVDSIFYGFQKGSFLAYCMNKSGSYEGFYGYYKLKDDEISITLWPDNSSGNEAAHE ELVNSASYKNFFGWGDTGERTFKVEELTDKKMRLNYEGTKYVFRKY ; _struct_ref.pdbx_align_begin 25 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5BYP A 2 ? 127 ? B7AGQ7 25 ? 150 ? 25 150 2 1 5BYP B 2 ? 127 ? B7AGQ7 25 ? 150 ? 25 150 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5BYP GLY A 1 ? UNP B7AGQ7 ? ? 'expression tag' 0 1 2 5BYP GLY B 1 ? UNP B7AGQ7 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5BYP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '34.00% polyethylene glycol 6000, 0.100M Sodium Iodide, 0.1M sodium citrate - citric acid pH 3.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-05-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97839 1.0 2 0.91837 1.0 3 0.9798 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97839,0.91837,0.9798 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 91.209 _reflns.entry_id 5BYP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.60 _reflns.d_resolution_low 42.712 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8129 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 93.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.999 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.033 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.710 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.047 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 73713 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.550 2.640 ? 1.2 ? 2885 1543 ? 584 37.800 ? ? 0.708 ? 1.054 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.175 ? ? 1 1 ? ? 2.640 2.750 ? 1.9 ? 8091 1633 ? 1619 99.100 ? ? 0.829 ? 0.758 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.846 ? ? 2 ? ? ? 2.750 2.870 ? 3.2 ? 7146 1483 ? 1466 98.900 ? ? 0.918 ? 0.469 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.525 ? ? 3 ? ? ? 2.870 3.020 ? 5.9 ? 8326 1574 ? 1570 99.700 ? ? 0.977 ? 0.233 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.258 ? ? 4 ? ? ? 3.020 3.210 ? 9.8 ? 8116 1567 ? 1563 99.700 ? ? 0.989 ? 0.149 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.166 ? ? 5 ? ? ? 3.210 3.460 ? 15.5 ? 7540 1589 ? 1578 99.300 ? ? 0.997 ? 0.087 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.097 ? ? 6 ? ? ? 3.460 3.800 ? 25.1 ? 7960 1544 ? 1537 99.500 ? ? 0.998 ? 0.053 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.059 ? ? 7 ? ? ? 3.800 4.350 ? 36.8 ? 7943 1581 ? 1571 99.400 ? ? 0.999 ? 0.033 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.037 ? ? 8 ? ? ? 4.350 5.460 ? 45.3 ? 7902 1559 ? 1556 99.800 ? ? 0.999 ? 0.029 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.032 ? ? 9 ? ? ? 5.460 42.712 ? 49.3 ? 7804 1614 ? 1603 99.300 ? ? 0.999 ? 0.026 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.028 ? ? 10 ? ? ? # _refine.aniso_B[1][1] -9.0707 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -9.0707 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 18.1415 _refine.B_iso_max 174.160 _refine.B_iso_mean 95.0935 _refine.B_iso_min 58.910 _refine.correlation_coeff_Fo_to_Fc 0.9090 _refine.correlation_coeff_Fo_to_Fc_free 0.8535 _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5BYP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.6000 _refine.ls_d_res_low 42.712 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8104 _refine.ls_number_reflns_R_free 383 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.9500 _refine.ls_percent_reflns_R_free 4.7300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2495 _refine.ls_R_factor_R_free 0.2998 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2471 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.750 _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5BYP _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.596 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1957 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1957 _refine_hist.d_res_high 2.6000 _refine_hist.d_res_low 42.712 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 880 ? t_dihedral_angle_d 4.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 51 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 296 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2016 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 234 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2199 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 2016 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.830 ? 2725 ? t_angle_deg 3.000 HARMONIC 'X-RAY DIFFRACTION' ? 3.570 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 2.530 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.6000 _refine_ls_shell.d_res_low 2.9100 _refine_ls_shell.number_reflns_all 2195 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 115 _refine_ls_shell.number_reflns_R_work 2080 _refine_ls_shell.percent_reflns_obs 98.9500 _refine_ls_shell.percent_reflns_R_free 5.2400 _refine_ls_shell.R_factor_all 0.2600 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3303 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2562 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5BYP _struct.title 'Crystal structure of an uncharacterized protein (BACEGG_01585) from Bacteroides eggerthii DSM 20697 at 2.60 A resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5BYP _struct_keywords.text 'Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 73 ? GLY A 75 ? SER A 96 GLY A 98 5 ? 3 HELX_P HELX_P2 AA2 ASN A 76 ? ASN A 85 ? ASN A 99 ASN A 108 1 ? 10 HELX_P HELX_P3 AA3 SER A 86 ? PHE A 93 ? SER A 109 PHE A 116 1 ? 8 HELX_P HELX_P4 AA4 SER B 73 ? GLY B 75 ? SER B 96 GLY B 98 5 ? 3 HELX_P HELX_P5 AA5 ASN B 76 ? ASN B 85 ? ASN B 99 ASN B 108 1 ? 10 HELX_P HELX_P6 AA6 SER B 86 ? PHE B 93 ? SER B 109 PHE B 116 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A CYS 43 C ? ? ? 1_555 A MSE 44 N ? ? A CYS 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale2 covale both ? A MSE 44 C ? ? ? 1_555 A ASN 45 N ? ? A MSE 67 A ASN 68 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale both ? A LYS 112 C ? ? ? 1_555 A MSE 113 N ? ? A LYS 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale4 covale both ? A MSE 113 C ? ? ? 1_555 A ARG 114 N ? ? A MSE 136 A ARG 137 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale5 covale both ? B CYS 43 C ? ? ? 1_555 B MSE 44 N ? ? B CYS 66 B MSE 67 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? B MSE 44 C ? ? ? 1_555 B ASN 45 N ? ? B MSE 67 B ASN 68 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? B LYS 112 C ? ? ? 1_555 B MSE 113 N ? ? B LYS 135 B MSE 136 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? B MSE 113 C ? ? ? 1_555 B ARG 114 N ? ? B MSE 136 B ARG 137 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TRP 69 A . ? TRP 92 A PRO 70 A ? PRO 93 A 1 3.48 2 TRP 69 B . ? TRP 92 B PRO 70 B ? PRO 93 B 1 3.22 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 10 ? AA2 ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA1 9 10 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA2 8 9 ? anti-parallel AA2 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 24 ? LYS A 26 ? VAL A 47 LYS A 49 AA1 2 GLY A 10 ? GLN A 18 ? GLY A 33 GLN A 41 AA1 3 THR A 120 ? LYS A 126 ? THR A 143 LYS A 149 AA1 4 LYS A 112 ? TYR A 117 ? LYS A 135 TYR A 140 AA1 5 GLU A 100 ? LEU A 108 ? GLU A 123 LEU A 131 AA1 6 GLU A 63 ? LEU A 68 ? GLU A 86 LEU A 91 AA1 7 GLU A 51 ? LYS A 60 ? GLU A 74 LYS A 83 AA1 8 SER A 38 ? CYS A 43 ? SER A 61 CYS A 66 AA1 9 ILE A 30 ? GLN A 35 ? ILE A 53 GLN A 58 AA1 10 GLY A 10 ? GLN A 18 ? GLY A 33 GLN A 41 AA2 1 VAL B 24 ? LYS B 26 ? VAL B 47 LYS B 49 AA2 2 GLY B 10 ? GLN B 18 ? GLY B 33 GLN B 41 AA2 3 THR B 120 ? LYS B 126 ? THR B 143 LYS B 149 AA2 4 LYS B 112 ? TYR B 117 ? LYS B 135 TYR B 140 AA2 5 GLU B 100 ? LEU B 108 ? GLU B 123 LEU B 131 AA2 6 GLU B 63 ? LEU B 68 ? GLU B 86 LEU B 91 AA2 7 SER B 49 ? LYS B 60 ? SER B 72 LYS B 83 AA2 8 SER B 38 ? ASN B 45 ? SER B 61 ASN B 68 AA2 9 ILE B 30 ? GLN B 35 ? ILE B 53 GLN B 58 AA2 10 GLY B 10 ? GLN B 18 ? GLY B 33 GLN B 41 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN A 25 ? O GLN A 48 N TYR A 17 ? N TYR A 40 AA1 2 3 N GLN A 13 ? N GLN A 36 O ARG A 125 ? O ARG A 148 AA1 3 4 O PHE A 124 ? O PHE A 147 N MSE A 113 ? N MSE A 136 AA1 4 5 O ARG A 114 ? O ARG A 137 N GLU A 106 ? N GLU A 129 AA1 5 6 O PHE A 103 ? O PHE A 126 N ILE A 64 ? N ILE A 87 AA1 6 7 O THR A 67 ? O THR A 90 N TYR A 56 ? N TYR A 79 AA1 7 8 O GLY A 55 ? O GLY A 78 N PHE A 39 ? N PHE A 62 AA1 8 9 O LEU A 40 ? O LEU A 63 N GLY A 33 ? N GLY A 56 AA1 9 10 O TYR A 32 ? O TYR A 55 N TRP A 12 ? N TRP A 35 AA2 1 2 O GLN B 25 ? O GLN B 48 N TYR B 17 ? N TYR B 40 AA2 2 3 N GLN B 13 ? N GLN B 36 O ARG B 125 ? O ARG B 148 AA2 3 4 O PHE B 124 ? O PHE B 147 N MSE B 113 ? N MSE B 136 AA2 4 5 O ARG B 114 ? O ARG B 137 N GLU B 106 ? N GLU B 129 AA2 5 6 O PHE B 103 ? O PHE B 126 N ILE B 64 ? N ILE B 87 AA2 6 7 O THR B 67 ? O THR B 90 N TYR B 56 ? N TYR B 79 AA2 7 8 O GLY B 55 ? O GLY B 78 N PHE B 39 ? N PHE B 62 AA2 8 9 O LEU B 40 ? O LEU B 63 N GLY B 33 ? N GLY B 56 AA2 9 10 O TYR B 32 ? O TYR B 55 N TRP B 12 ? N TRP B 35 # _atom_sites.entry_id 5BYP _atom_sites.fract_transf_matrix[1][1] 0.015432 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015432 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004239 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ASN 2 25 ? ? ? A . n A 1 3 ASP 3 26 ? ? ? A . n A 1 4 GLY 4 27 ? ? ? A . n A 1 5 GLY 5 28 ? ? ? A . n A 1 6 SER 6 29 ? ? ? A . n A 1 7 ASP 7 30 30 ASP ASP A . n A 1 8 TRP 8 31 31 TRP TRP A . n A 1 9 VAL 9 32 32 VAL VAL A . n A 1 10 GLY 10 33 33 GLY GLY A . n A 1 11 LYS 11 34 34 LYS LYS A . n A 1 12 TRP 12 35 35 TRP TRP A . n A 1 13 GLN 13 36 36 GLN GLN A . n A 1 14 LEU 14 37 37 LEU LEU A . n A 1 15 ARG 15 38 38 ARG ARG A . n A 1 16 GLU 16 39 39 GLU GLU A . n A 1 17 TYR 17 40 40 TYR TYR A . n A 1 18 GLN 18 41 41 GLN GLN A . n A 1 19 TYR 19 42 42 TYR TYR A . n A 1 20 PRO 20 43 43 PRO PRO A . n A 1 21 ASP 21 44 44 ASP ASP A . n A 1 22 GLY 22 45 45 GLY GLY A . n A 1 23 LYS 23 46 46 LYS LYS A . n A 1 24 VAL 24 47 47 VAL VAL A . n A 1 25 GLN 25 48 48 GLN GLN A . n A 1 26 LYS 26 49 49 LYS LYS A . n A 1 27 VAL 27 50 50 VAL VAL A . n A 1 28 ASP 28 51 51 ASP ASP A . n A 1 29 SER 29 52 52 SER SER A . n A 1 30 ILE 30 53 53 ILE ILE A . n A 1 31 PHE 31 54 54 PHE PHE A . n A 1 32 TYR 32 55 55 TYR TYR A . n A 1 33 GLY 33 56 56 GLY GLY A . n A 1 34 PHE 34 57 57 PHE PHE A . n A 1 35 GLN 35 58 58 GLN GLN A . n A 1 36 LYS 36 59 59 LYS LYS A . n A 1 37 GLY 37 60 60 GLY GLY A . n A 1 38 SER 38 61 61 SER SER A . n A 1 39 PHE 39 62 62 PHE PHE A . n A 1 40 LEU 40 63 63 LEU LEU A . n A 1 41 ALA 41 64 64 ALA ALA A . n A 1 42 TYR 42 65 65 TYR TYR A . n A 1 43 CYS 43 66 66 CYS CYS A . n A 1 44 MSE 44 67 67 MSE MSE A . n A 1 45 ASN 45 68 68 ASN ASN A . n A 1 46 LYS 46 69 69 LYS LYS A . n A 1 47 SER 47 70 70 SER SER A . n A 1 48 GLY 48 71 71 GLY GLY A . n A 1 49 SER 49 72 72 SER SER A . n A 1 50 TYR 50 73 73 TYR TYR A . n A 1 51 GLU 51 74 74 GLU GLU A . n A 1 52 GLY 52 75 75 GLY GLY A . n A 1 53 PHE 53 76 76 PHE PHE A . n A 1 54 TYR 54 77 77 TYR TYR A . n A 1 55 GLY 55 78 78 GLY GLY A . n A 1 56 TYR 56 79 79 TYR TYR A . n A 1 57 TYR 57 80 80 TYR TYR A . n A 1 58 LYS 58 81 81 LYS LYS A . n A 1 59 LEU 59 82 82 LEU LEU A . n A 1 60 LYS 60 83 83 LYS LYS A . n A 1 61 ASP 61 84 84 ASP ASP A . n A 1 62 ASP 62 85 85 ASP ASP A . n A 1 63 GLU 63 86 86 GLU GLU A . n A 1 64 ILE 64 87 87 ILE ILE A . n A 1 65 SER 65 88 88 SER SER A . n A 1 66 ILE 66 89 89 ILE ILE A . n A 1 67 THR 67 90 90 THR THR A . n A 1 68 LEU 68 91 91 LEU LEU A . n A 1 69 TRP 69 92 92 TRP TRP A . n A 1 70 PRO 70 93 93 PRO PRO A . n A 1 71 ASP 71 94 94 ASP ASP A . n A 1 72 ASN 72 95 95 ASN ASN A . n A 1 73 SER 73 96 96 SER SER A . n A 1 74 SER 74 97 97 SER SER A . n A 1 75 GLY 75 98 98 GLY GLY A . n A 1 76 ASN 76 99 99 ASN ASN A . n A 1 77 GLU 77 100 100 GLU GLU A . n A 1 78 ALA 78 101 101 ALA ALA A . n A 1 79 ALA 79 102 102 ALA ALA A . n A 1 80 HIS 80 103 103 HIS HIS A . n A 1 81 GLU 81 104 104 GLU GLU A . n A 1 82 GLU 82 105 105 GLU GLU A . n A 1 83 LEU 83 106 106 LEU LEU A . n A 1 84 VAL 84 107 107 VAL VAL A . n A 1 85 ASN 85 108 108 ASN ASN A . n A 1 86 SER 86 109 109 SER SER A . n A 1 87 ALA 87 110 110 ALA ALA A . n A 1 88 SER 88 111 111 SER SER A . n A 1 89 TYR 89 112 112 TYR TYR A . n A 1 90 LYS 90 113 113 LYS LYS A . n A 1 91 ASN 91 114 114 ASN ASN A . n A 1 92 PHE 92 115 115 PHE PHE A . n A 1 93 PHE 93 116 116 PHE PHE A . n A 1 94 GLY 94 117 117 GLY GLY A . n A 1 95 TRP 95 118 118 TRP TRP A . n A 1 96 GLY 96 119 119 GLY GLY A . n A 1 97 ASP 97 120 120 ASP ASP A . n A 1 98 THR 98 121 121 THR THR A . n A 1 99 GLY 99 122 122 GLY GLY A . n A 1 100 GLU 100 123 123 GLU GLU A . n A 1 101 ARG 101 124 124 ARG ARG A . n A 1 102 THR 102 125 125 THR THR A . n A 1 103 PHE 103 126 126 PHE PHE A . n A 1 104 LYS 104 127 127 LYS LYS A . n A 1 105 VAL 105 128 128 VAL VAL A . n A 1 106 GLU 106 129 129 GLU GLU A . n A 1 107 GLU 107 130 130 GLU GLU A . n A 1 108 LEU 108 131 131 LEU LEU A . n A 1 109 THR 109 132 132 THR THR A . n A 1 110 ASP 110 133 133 ASP ASP A . n A 1 111 LYS 111 134 134 LYS LYS A . n A 1 112 LYS 112 135 135 LYS LYS A . n A 1 113 MSE 113 136 136 MSE MSE A . n A 1 114 ARG 114 137 137 ARG ARG A . n A 1 115 LEU 115 138 138 LEU LEU A . n A 1 116 ASN 116 139 139 ASN ASN A . n A 1 117 TYR 117 140 140 TYR TYR A . n A 1 118 GLU 118 141 141 GLU GLU A . n A 1 119 GLY 119 142 142 GLY GLY A . n A 1 120 THR 120 143 143 THR THR A . n A 1 121 LYS 121 144 144 LYS LYS A . n A 1 122 TYR 122 145 145 TYR TYR A . n A 1 123 VAL 123 146 146 VAL VAL A . n A 1 124 PHE 124 147 147 PHE PHE A . n A 1 125 ARG 125 148 148 ARG ARG A . n A 1 126 LYS 126 149 149 LYS LYS A . n A 1 127 TYR 127 150 150 TYR TYR A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 ASN 2 25 ? ? ? B . n B 1 3 ASP 3 26 ? ? ? B . n B 1 4 GLY 4 27 ? ? ? B . n B 1 5 GLY 5 28 ? ? ? B . n B 1 6 SER 6 29 ? ? ? B . n B 1 7 ASP 7 30 30 ASP ASP B . n B 1 8 TRP 8 31 31 TRP TRP B . n B 1 9 VAL 9 32 32 VAL VAL B . n B 1 10 GLY 10 33 33 GLY GLY B . n B 1 11 LYS 11 34 34 LYS LYS B . n B 1 12 TRP 12 35 35 TRP TRP B . n B 1 13 GLN 13 36 36 GLN GLN B . n B 1 14 LEU 14 37 37 LEU LEU B . n B 1 15 ARG 15 38 38 ARG ARG B . n B 1 16 GLU 16 39 39 GLU GLU B . n B 1 17 TYR 17 40 40 TYR TYR B . n B 1 18 GLN 18 41 41 GLN GLN B . n B 1 19 TYR 19 42 42 TYR TYR B . n B 1 20 PRO 20 43 43 PRO PRO B . n B 1 21 ASP 21 44 44 ASP ASP B . n B 1 22 GLY 22 45 45 GLY GLY B . n B 1 23 LYS 23 46 46 LYS LYS B . n B 1 24 VAL 24 47 47 VAL VAL B . n B 1 25 GLN 25 48 48 GLN GLN B . n B 1 26 LYS 26 49 49 LYS LYS B . n B 1 27 VAL 27 50 50 VAL VAL B . n B 1 28 ASP 28 51 51 ASP ASP B . n B 1 29 SER 29 52 52 SER SER B . n B 1 30 ILE 30 53 53 ILE ILE B . n B 1 31 PHE 31 54 54 PHE PHE B . n B 1 32 TYR 32 55 55 TYR TYR B . n B 1 33 GLY 33 56 56 GLY GLY B . n B 1 34 PHE 34 57 57 PHE PHE B . n B 1 35 GLN 35 58 58 GLN GLN B . n B 1 36 LYS 36 59 59 LYS LYS B . n B 1 37 GLY 37 60 60 GLY GLY B . n B 1 38 SER 38 61 61 SER SER B . n B 1 39 PHE 39 62 62 PHE PHE B . n B 1 40 LEU 40 63 63 LEU LEU B . n B 1 41 ALA 41 64 64 ALA ALA B . n B 1 42 TYR 42 65 65 TYR TYR B . n B 1 43 CYS 43 66 66 CYS CYS B . n B 1 44 MSE 44 67 67 MSE MSE B . n B 1 45 ASN 45 68 68 ASN ASN B . n B 1 46 LYS 46 69 69 LYS LYS B . n B 1 47 SER 47 70 70 SER SER B . n B 1 48 GLY 48 71 71 GLY GLY B . n B 1 49 SER 49 72 72 SER SER B . n B 1 50 TYR 50 73 73 TYR TYR B . n B 1 51 GLU 51 74 74 GLU GLU B . n B 1 52 GLY 52 75 75 GLY GLY B . n B 1 53 PHE 53 76 76 PHE PHE B . n B 1 54 TYR 54 77 77 TYR TYR B . n B 1 55 GLY 55 78 78 GLY GLY B . n B 1 56 TYR 56 79 79 TYR TYR B . n B 1 57 TYR 57 80 80 TYR TYR B . n B 1 58 LYS 58 81 81 LYS LYS B . n B 1 59 LEU 59 82 82 LEU LEU B . n B 1 60 LYS 60 83 83 LYS LYS B . n B 1 61 ASP 61 84 84 ASP ASP B . n B 1 62 ASP 62 85 85 ASP ASP B . n B 1 63 GLU 63 86 86 GLU GLU B . n B 1 64 ILE 64 87 87 ILE ILE B . n B 1 65 SER 65 88 88 SER SER B . n B 1 66 ILE 66 89 89 ILE ILE B . n B 1 67 THR 67 90 90 THR THR B . n B 1 68 LEU 68 91 91 LEU LEU B . n B 1 69 TRP 69 92 92 TRP TRP B . n B 1 70 PRO 70 93 93 PRO PRO B . n B 1 71 ASP 71 94 94 ASP ASP B . n B 1 72 ASN 72 95 95 ASN ASN B . n B 1 73 SER 73 96 96 SER SER B . n B 1 74 SER 74 97 97 SER SER B . n B 1 75 GLY 75 98 98 GLY GLY B . n B 1 76 ASN 76 99 99 ASN ASN B . n B 1 77 GLU 77 100 100 GLU GLU B . n B 1 78 ALA 78 101 101 ALA ALA B . n B 1 79 ALA 79 102 102 ALA ALA B . n B 1 80 HIS 80 103 103 HIS HIS B . n B 1 81 GLU 81 104 104 GLU GLU B . n B 1 82 GLU 82 105 105 GLU GLU B . n B 1 83 LEU 83 106 106 LEU LEU B . n B 1 84 VAL 84 107 107 VAL VAL B . n B 1 85 ASN 85 108 108 ASN ASN B . n B 1 86 SER 86 109 109 SER SER B . n B 1 87 ALA 87 110 110 ALA ALA B . n B 1 88 SER 88 111 111 SER SER B . n B 1 89 TYR 89 112 112 TYR TYR B . n B 1 90 LYS 90 113 113 LYS LYS B . n B 1 91 ASN 91 114 114 ASN ASN B . n B 1 92 PHE 92 115 115 PHE PHE B . n B 1 93 PHE 93 116 116 PHE PHE B . n B 1 94 GLY 94 117 117 GLY GLY B . n B 1 95 TRP 95 118 118 TRP TRP B . n B 1 96 GLY 96 119 119 GLY GLY B . n B 1 97 ASP 97 120 120 ASP ASP B . n B 1 98 THR 98 121 121 THR THR B . n B 1 99 GLY 99 122 122 GLY GLY B . n B 1 100 GLU 100 123 123 GLU GLU B . n B 1 101 ARG 101 124 124 ARG ARG B . n B 1 102 THR 102 125 125 THR THR B . n B 1 103 PHE 103 126 126 PHE PHE B . n B 1 104 LYS 104 127 127 LYS LYS B . n B 1 105 VAL 105 128 128 VAL VAL B . n B 1 106 GLU 106 129 129 GLU GLU B . n B 1 107 GLU 107 130 130 GLU GLU B . n B 1 108 LEU 108 131 131 LEU LEU B . n B 1 109 THR 109 132 132 THR THR B . n B 1 110 ASP 110 133 133 ASP ASP B . n B 1 111 LYS 111 134 134 LYS LYS B . n B 1 112 LYS 112 135 135 LYS LYS B . n B 1 113 MSE 113 136 136 MSE MSE B . n B 1 114 ARG 114 137 137 ARG ARG B . n B 1 115 LEU 115 138 138 LEU LEU B . n B 1 116 ASN 116 139 139 ASN ASN B . n B 1 117 TYR 117 140 140 TYR TYR B . n B 1 118 GLU 118 141 141 GLU GLU B . n B 1 119 GLY 119 142 142 GLY GLY B . n B 1 120 THR 120 143 143 THR THR B . n B 1 121 LYS 121 144 144 LYS LYS B . n B 1 122 TYR 122 145 145 TYR TYR B . n B 1 123 VAL 123 146 146 VAL VAL B . n B 1 124 PHE 124 147 147 PHE PHE B . n B 1 125 ARG 125 148 148 ARG ARG B . n B 1 126 LYS 126 149 149 LYS LYS B . n B 1 127 TYR 127 150 150 TYR TYR B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 44 A MSE 67 ? MET 'modified residue' 2 A MSE 113 A MSE 136 ? MET 'modified residue' 3 B MSE 44 B MSE 67 ? MET 'modified residue' 4 B MSE 113 B MSE 136 ? MET 'modified residue' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 2 1 B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-08 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' pdbx_struct_oper_list 3 2 'Structure model' software 4 3 'Structure model' citation_author 5 4 'Structure model' database_2 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 2 'Structure model' '_software.classification' 4 3 'Structure model' '_citation_author.name' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -8.2857 21.3437 -11.0751 -0.3040 ? 0.1520 ? -0.0117 ? 0.3040 ? -0.1238 ? -0.3040 ? 5.4341 ? -1.9442 ? 0.7672 ? 3.7590 ? -1.4129 ? 3.4629 ? 0.0434 ? 0.5442 ? 0.0419 ? -0.4097 ? -0.1382 ? 0.2423 ? 0.1337 ? -0.5442 ? 0.0948 ? 2 'X-RAY DIFFRACTION' ? refined 22.8861 10.4599 -16.8491 -0.1287 ? 0.1520 ? -0.0663 ? 0.1634 ? 0.0000 ? -0.2066 ? 6.2612 ? -0.3004 ? -0.0357 ? 3.6140 ? -0.3228 ? 2.8753 ? -0.3086 ? 0.3198 ? 0.5050 ? 0.4801 ? 0.0877 ? -0.3893 ? -0.0964 ? -0.0052 ? 0.2209 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 30 ? ? A 150 ? '{A|30 - 150}' 2 'X-RAY DIFFRACTION' 2 ? ? B 30 ? ? B 150 ? '{B|30 - 150}' # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.10 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 'January 10, 2014 BUILT=20140307' 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 2.10.0 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHARP ? ? ? . 6 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.0 7 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 8 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5BYP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (25-150) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 44 ? ? -54.21 -5.31 2 1 ASP A 51 ? ? -134.80 -30.38 3 1 LYS A 59 ? ? 38.39 56.25 4 1 ASN A 68 ? ? -160.63 117.75 5 1 ASP A 84 ? ? 55.25 -104.79 6 1 ASN A 95 ? ? -98.09 42.68 7 1 PHE A 116 ? ? -94.28 -62.21 8 1 PRO B 43 ? ? -41.67 -71.72 9 1 LYS B 59 ? ? 38.37 55.48 10 1 LYS B 69 ? ? -51.01 -3.86 11 1 ASP B 84 ? ? 54.81 -104.36 12 1 ASN B 95 ? ? -97.32 42.49 13 1 TRP B 118 ? ? -56.27 2.21 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 30 ? CG ? A ASP 7 CG 2 1 Y 1 A ASP 30 ? OD1 ? A ASP 7 OD1 3 1 Y 1 A ASP 30 ? OD2 ? A ASP 7 OD2 4 1 Y 1 A ARG 38 ? CG ? A ARG 15 CG 5 1 Y 1 A ARG 38 ? CD ? A ARG 15 CD 6 1 Y 1 A ARG 38 ? NE ? A ARG 15 NE 7 1 Y 1 A ARG 38 ? CZ ? A ARG 15 CZ 8 1 Y 1 A ARG 38 ? NH1 ? A ARG 15 NH1 9 1 Y 1 A ARG 38 ? NH2 ? A ARG 15 NH2 10 1 Y 1 A LYS 46 ? CG ? A LYS 23 CG 11 1 Y 1 A LYS 46 ? CD ? A LYS 23 CD 12 1 Y 1 A LYS 46 ? CE ? A LYS 23 CE 13 1 Y 1 A LYS 46 ? NZ ? A LYS 23 NZ 14 1 Y 1 A ASN 68 ? CG ? A ASN 45 CG 15 1 Y 1 A ASN 68 ? OD1 ? A ASN 45 OD1 16 1 Y 1 A ASN 68 ? ND2 ? A ASN 45 ND2 17 1 Y 1 A LYS 69 ? CG ? A LYS 46 CG 18 1 Y 1 A LYS 69 ? CD ? A LYS 46 CD 19 1 Y 1 A LYS 69 ? CE ? A LYS 46 CE 20 1 Y 1 A LYS 69 ? NZ ? A LYS 46 NZ 21 1 Y 1 A LYS 81 ? CG ? A LYS 58 CG 22 1 Y 1 A LYS 81 ? CD ? A LYS 58 CD 23 1 Y 1 A LYS 81 ? CE ? A LYS 58 CE 24 1 Y 1 A LYS 81 ? NZ ? A LYS 58 NZ 25 1 Y 1 A ASP 84 ? CG ? A ASP 61 CG 26 1 Y 1 A ASP 84 ? OD1 ? A ASP 61 OD1 27 1 Y 1 A ASP 84 ? OD2 ? A ASP 61 OD2 28 1 Y 1 A LYS 134 ? CG ? A LYS 111 CG 29 1 Y 1 A LYS 134 ? CD ? A LYS 111 CD 30 1 Y 1 A LYS 134 ? CE ? A LYS 111 CE 31 1 Y 1 A LYS 134 ? NZ ? A LYS 111 NZ 32 1 Y 1 A LYS 144 ? CG ? A LYS 121 CG 33 1 Y 1 A LYS 144 ? CD ? A LYS 121 CD 34 1 Y 1 A LYS 144 ? CE ? A LYS 121 CE 35 1 Y 1 A LYS 144 ? NZ ? A LYS 121 NZ 36 1 Y 1 B ASP 30 ? CG ? B ASP 7 CG 37 1 Y 1 B ASP 30 ? OD1 ? B ASP 7 OD1 38 1 Y 1 B ASP 30 ? OD2 ? B ASP 7 OD2 39 1 Y 1 B ASP 51 ? CG ? B ASP 28 CG 40 1 Y 1 B ASP 51 ? OD1 ? B ASP 28 OD1 41 1 Y 1 B ASP 51 ? OD2 ? B ASP 28 OD2 42 1 Y 1 B ASN 68 ? CG ? B ASN 45 CG 43 1 Y 1 B ASN 68 ? OD1 ? B ASN 45 OD1 44 1 Y 1 B ASN 68 ? ND2 ? B ASN 45 ND2 45 1 Y 1 B LYS 69 ? CG ? B LYS 46 CG 46 1 Y 1 B LYS 69 ? CD ? B LYS 46 CD 47 1 Y 1 B LYS 69 ? CE ? B LYS 46 CE 48 1 Y 1 B LYS 69 ? NZ ? B LYS 46 NZ 49 1 Y 1 B SER 70 ? OG ? B SER 47 OG 50 1 Y 1 B LYS 81 ? CG ? B LYS 58 CG 51 1 Y 1 B LYS 81 ? CD ? B LYS 58 CD 52 1 Y 1 B LYS 81 ? CE ? B LYS 58 CE 53 1 Y 1 B LYS 81 ? NZ ? B LYS 58 NZ 54 1 Y 1 B LYS 134 ? CG ? B LYS 111 CG 55 1 Y 1 B LYS 134 ? CD ? B LYS 111 CD 56 1 Y 1 B LYS 134 ? CE ? B LYS 111 CE 57 1 Y 1 B LYS 134 ? NZ ? B LYS 111 NZ 58 1 Y 1 B LYS 144 ? CG ? B LYS 121 CG 59 1 Y 1 B LYS 144 ? CD ? B LYS 121 CD 60 1 Y 1 B LYS 144 ? CE ? B LYS 121 CE 61 1 Y 1 B LYS 144 ? NZ ? B LYS 121 NZ 62 1 Y 1 B TYR 150 ? CG ? B TYR 127 CG 63 1 Y 1 B TYR 150 ? CD1 ? B TYR 127 CD1 64 1 Y 1 B TYR 150 ? CD2 ? B TYR 127 CD2 65 1 Y 1 B TYR 150 ? CE1 ? B TYR 127 CE1 66 1 Y 1 B TYR 150 ? CE2 ? B TYR 127 CE2 67 1 Y 1 B TYR 150 ? CZ ? B TYR 127 CZ 68 1 Y 1 B TYR 150 ? OH ? B TYR 127 OH # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASN 25 ? A ASN 2 3 1 Y 1 A ASP 26 ? A ASP 3 4 1 Y 1 A GLY 27 ? A GLY 4 5 1 Y 1 A GLY 28 ? A GLY 5 6 1 Y 1 A SER 29 ? A SER 6 7 1 Y 1 B GLY 0 ? B GLY 1 8 1 Y 1 B ASN 25 ? B ASN 2 9 1 Y 1 B ASP 26 ? B ASP 3 10 1 Y 1 B GLY 27 ? B GLY 4 11 1 Y 1 B GLY 28 ? B GLY 5 12 1 Y 1 B SER 29 ? B SER 6 #