data_5C7U # _entry.id 5C7U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5C7U pdb_00005c7u 10.2210/pdb5c7u/pdb WWPDB D_1000210989 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5C7W _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5C7U _pdbx_database_status.recvd_initial_deposition_date 2015-06-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hernandez, A.R.' 1 ? 'Shao, Y.' 2 ? 'Hoshika, S.' 3 ? 'Yang, Z.' 4 ? 'Shelke, S.A.' 5 ? 'Herrou, J.' 6 ? 'Kim, H.-J.' 7 ? 'Kim, M.-J.' 8 ? 'Piccirilli, J.A.' 9 ? 'Benner, S.A.' 10 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 54 _citation.language ? _citation.page_first 9853 _citation.page_last 9856 _citation.title 'A Crystal Structure of a Functional RNA Molecule Containing an Artificial Nucleobase Pair.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201504731 _citation.pdbx_database_id_PubMed 26223188 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hernandez, A.R.' 1 ? primary 'Shao, Y.' 2 ? primary 'Hoshika, S.' 3 ? primary 'Yang, Z.' 4 ? primary 'Shelke, S.A.' 5 ? primary 'Herrou, J.' 6 ? primary 'Kim, H.J.' 7 ? primary 'Kim, M.J.' 8 ? primary 'Piccirilli, J.A.' 9 ? primary 'Benner, S.A.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5C7U _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.600 _cell.length_a_esd ? _cell.length_b 52.600 _cell.length_b_esd ? _cell.length_c 278.120 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;5'-monophosphate wt guanine riboswitch ; 21506.783 1 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 7 ? ? ? ? 3 non-polymer syn HYPOXANTHINE 136.111 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 C n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 67 _pdbx_entity_src_syn.organism_scientific 'Bacillus subtilis subsp. subtilis str. 168' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 224308 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code X83878.1 _struct_ref.pdbx_db_accession 633168 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGU _struct_ref.pdbx_align_begin 186 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5C7U _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 633168 _struct_ref_seq.db_align_beg 186 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 252 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5C7U G B 1 ? GB 633168 A 186 conflict 15 1 1 5C7U G B 2 ? GB 633168 C 187 conflict 16 2 1 5C7U A B 3 ? GB 633168 U 188 conflict 17 3 1 5C7U U B 65 ? GB 633168 G 250 conflict 79 4 1 5C7U C B 66 ? GB 633168 G 251 conflict 80 5 1 5C7U C B 67 ? GB 633168 U 252 conflict 81 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HPA non-polymer . HYPOXANTHINE ? 'C5 H4 N4 O' 136.111 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5C7U _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '17% PEG 1000; 240 mM NH4OAc; 10 mM K-HEPES; 10 mM Co(NH3)6Cl3' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-03-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 95.15 _reflns.entry_id 5C7U _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.05 _reflns.d_resolution_low 46.36 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 4923 _reflns.number_obs 4923 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 33 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.05 _reflns_shell.d_res_low 3.16 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.50 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 14.82 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5C7U _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.050 _refine.ls_d_res_low 45.553 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4676 _refine.ls_number_reflns_R_free 247 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.76 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2034 _refine.ls_R_factor_R_free 0.2411 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2011 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4FE5 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.02 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.30 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1425 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1484 _refine_hist.d_res_high 3.050 _refine_hist.d_res_low 45.553 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1645 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.663 ? 2598 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.395 ? 801 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.065 ? 335 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 68 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.0501 3.8425 . . 110 2243 100.00 . . . 0.2424 . 0.1897 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8425 45.5580 . . 137 2433 100.00 . . . 0.2408 . 0.2044 . . . . . . . . . . # _struct.entry_id 5C7U _struct.title ;5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine. ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5C7U _struct_keywords.text 'expanded RNA; riboswitch; Unnatural base pair, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 67 N3 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 67 O2 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 67 N4 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A G 32 N1 ? ? B U 22 B G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? B U 30 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? B U 30 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog40 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog42 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog43 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog50 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog51 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? B U 47 B U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog55 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? B U 49 B A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog56 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? B C 50 B U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog57 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 O2 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog64 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? B G 57 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? B G 57 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog66 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? B A 59 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? B A 59 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NCO 101 ? 3 'binding site for residue NCO B 101' AC2 Software B NCO 102 ? 2 'binding site for residue NCO B 102' AC3 Software B NCO 103 ? 5 'binding site for residue NCO B 103' AC4 Software B NCO 104 ? 4 'binding site for residue NCO B 104' AC5 Software B NCO 105 ? 4 'binding site for residue NCO B 105' AC6 Software B NCO 106 ? 3 'binding site for residue NCO B 106' AC7 Software B NCO 107 ? 4 'binding site for residue NCO B 107' AC8 Software B HPA 108 ? 8 'binding site for residue HPA B 108' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 C A 47 ? C B 61 . ? 1_555 ? 2 AC1 3 G A 48 ? G B 62 . ? 1_555 ? 3 AC1 3 C A 67 ? C B 81 . ? 6_454 ? 4 AC2 2 G A 23 ? G B 37 . ? 1_555 ? 5 AC2 2 G A 24 ? G B 38 . ? 1_555 ? 6 AC3 5 G A 41 ? G B 55 . ? 1_555 ? 7 AC3 5 G A 42 ? G B 56 . ? 1_555 ? 8 AC3 5 G A 43 ? G B 57 . ? 1_555 ? 9 AC3 5 G A 54 ? G B 68 . ? 1_555 ? 10 AC3 5 U A 55 ? U B 69 . ? 1_555 ? 11 AC4 4 G A 32 ? G B 46 . ? 1_555 ? 12 AC4 4 U A 33 ? U B 47 . ? 1_555 ? 13 AC4 4 C A 36 ? C B 50 . ? 1_555 ? 14 AC4 4 U A 37 ? U B 51 . ? 1_555 ? 15 AC5 4 U A 16 ? U B 30 . ? 1_555 ? 16 AC5 4 G A 17 ? G B 31 . ? 1_555 ? 17 AC5 4 G A 18 ? G B 32 . ? 1_555 ? 18 AC5 4 A A 52 ? A B 66 . ? 1_555 ? 19 AC6 3 A A 9 ? A B 23 . ? 1_555 ? 20 AC6 3 A A 10 ? A B 24 . ? 1_555 ? 21 AC6 3 C A 57 ? C B 71 . ? 1_555 ? 22 AC7 4 G A 13 ? G B 27 . ? 1_555 ? 23 AC7 4 U A 53 ? U B 67 . ? 1_555 ? 24 AC7 4 G A 54 ? G B 68 . ? 1_555 ? 25 AC7 4 U A 55 ? U B 69 . ? 8_555 ? 26 AC8 8 A A 7 ? A B 21 . ? 1_555 ? 27 AC8 8 U A 8 ? U B 22 . ? 1_555 ? 28 AC8 8 U A 33 ? U B 47 . ? 1_555 ? 29 AC8 8 U A 37 ? U B 51 . ? 1_555 ? 30 AC8 8 A A 38 ? A B 52 . ? 1_555 ? 31 AC8 8 A A 59 ? A B 73 . ? 1_555 ? 32 AC8 8 C A 60 ? C B 74 . ? 1_555 ? 33 AC8 8 U A 61 ? U B 75 . ? 1_555 ? # _atom_sites.entry_id 5C7U _atom_sites.fract_transf_matrix[1][1] 0.019011 _atom_sites.fract_transf_matrix[1][2] 0.010976 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021952 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003596 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 15 G G B . n A 1 2 G 2 16 16 G G B . n A 1 3 A 3 17 17 A A B . n A 1 4 C 4 18 18 C C B . n A 1 5 A 5 19 19 A A B . n A 1 6 U 6 20 20 U U B . n A 1 7 A 7 21 21 A A B . n A 1 8 U 8 22 22 U U B . n A 1 9 A 9 23 23 A A B . n A 1 10 A 10 24 24 A A B . n A 1 11 U 11 25 25 U U B . n A 1 12 C 12 26 26 C C B . n A 1 13 G 13 27 27 G G B . n A 1 14 C 14 28 28 C C B . n A 1 15 G 15 29 29 G G B . n A 1 16 U 16 30 30 U U B . n A 1 17 G 17 31 31 G G B . n A 1 18 G 18 32 32 G G B . n A 1 19 A 19 33 33 A A B . n A 1 20 U 20 34 34 U U B . n A 1 21 A 21 35 35 A A B . n A 1 22 U 22 36 36 U U B . n A 1 23 G 23 37 37 G G B . n A 1 24 G 24 38 38 G G B . n A 1 25 C 25 39 39 C C B . n A 1 26 A 26 40 40 A A B . n A 1 27 C 27 41 41 C C B . n A 1 28 G 28 42 42 G G B . n A 1 29 C 29 43 43 C C B . n A 1 30 A 30 44 44 A A B . n A 1 31 A 31 45 45 A A B . n A 1 32 G 32 46 46 G G B . n A 1 33 U 33 47 47 U U B . n A 1 34 U 34 48 48 U U B . n A 1 35 U 35 49 49 U U B . n A 1 36 C 36 50 50 C C B . n A 1 37 U 37 51 51 U U B . n A 1 38 A 38 52 52 A A B . n A 1 39 C 39 53 53 C C B . n A 1 40 C 40 54 54 C C B . n A 1 41 G 41 55 55 G G B . n A 1 42 G 42 56 56 G G B . n A 1 43 G 43 57 57 G G B . n A 1 44 C 44 58 58 C C B . n A 1 45 A 45 59 59 A A B . n A 1 46 C 46 60 60 C C B . n A 1 47 C 47 61 61 C C B . n A 1 48 G 48 62 62 G G B . n A 1 49 U 49 63 63 U U B . n A 1 50 A 50 64 64 A A B . n A 1 51 A 51 65 65 A A B . n A 1 52 A 52 66 66 A A B . n A 1 53 U 53 67 67 U U B . n A 1 54 G 54 68 68 G G B . n A 1 55 U 55 69 69 U U B . n A 1 56 C 56 70 70 C C B . n A 1 57 C 57 71 71 C C B . n A 1 58 G 58 72 72 G G B . n A 1 59 A 59 73 73 A A B . n A 1 60 C 60 74 74 C C B . n A 1 61 U 61 75 75 U U B . n A 1 62 A 62 76 76 A A B . n A 1 63 U 63 77 77 U U B . n A 1 64 G 64 78 78 G G B . n A 1 65 U 65 79 79 U U B . n A 1 66 C 66 80 80 C C B . n A 1 67 C 67 81 81 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO 1 101 1 NCO NCO B . C 2 NCO 1 102 2 NCO NCO B . D 2 NCO 1 103 3 NCO NCO B . E 2 NCO 1 104 4 NCO NCO B . F 2 NCO 1 105 5 NCO NCO B . G 2 NCO 1 106 6 NCO NCO B . H 2 NCO 1 107 7 NCO NCO B . I 3 HPA 1 108 1 HPA HPA B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-12 2 'Structure model' 1 1 2015-08-19 3 'Structure model' 1 2 2020-01-01 4 'Structure model' 1 3 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -8.8176 _pdbx_refine_tls.origin_y -11.2719 _pdbx_refine_tls.origin_z 4.0810 _pdbx_refine_tls.T[1][1] 0.8076 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.1015 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.1689 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.1560 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0557 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.5484 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.3917 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.3170 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.1247 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.2785 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.0705 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.4510 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.3092 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0023 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.1416 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0026 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0226 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.3764 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.2721 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0970 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.1789 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_1405 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N9 _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 66 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C4 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 66 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.334 _pdbx_validate_rmsd_bond.bond_target_value 1.374 _pdbx_validate_rmsd_bond.bond_deviation -0.040 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 B C 18 ? ? N1 B C 18 ? ? C2 B C 18 ? ? 122.84 120.30 2.54 0.40 N 2 1 N3 B G 55 ? ? C4 B G 55 ? ? C5 B G 55 ? ? 132.11 128.60 3.51 0.50 N 3 1 C8 B G 55 ? ? N9 B G 55 ? ? C4 B G 55 ? ? 108.97 106.40 2.57 0.40 N 4 1 C6 B C 61 ? ? N1 B C 61 ? ? C2 B C 61 ? ? 123.36 120.30 3.06 0.40 N 5 1 N1 B C 61 ? ? C2 B C 61 ? ? O2 B C 61 ? ? 114.15 118.90 -4.75 0.60 N 6 1 N3 B C 61 ? ? C2 B C 61 ? ? O2 B C 61 ? ? 127.75 121.90 5.85 0.70 N 7 1 N3 B C 70 ? ? C4 B C 70 ? ? N4 B C 70 ? ? 122.54 118.00 4.54 0.70 N 8 1 C5 B C 70 ? ? C4 B C 70 ? ? N4 B C 70 ? ? 115.78 120.20 -4.42 0.70 N 9 1 N7 B G 78 ? ? C8 B G 78 ? ? N9 B G 78 ? ? 109.83 113.10 -3.27 0.50 N 10 1 C8 B G 78 ? ? N9 B G 78 ? ? C4 B G 78 ? ? 109.74 106.40 3.34 0.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HPA N1 N Y N 111 HPA C2 C Y N 112 HPA N3 N Y N 113 HPA C4 C Y N 114 HPA C5 C Y N 115 HPA C6 C Y N 116 HPA O6 O N N 117 HPA N7 N Y N 118 HPA C8 C Y N 119 HPA N9 N Y N 120 HPA HN1 H N N 121 HPA H2 H N N 122 HPA HN7 H N N 123 HPA H8 H N N 124 NCO CO CO N N 125 NCO N1 N N N 126 NCO N2 N N N 127 NCO N3 N N N 128 NCO N4 N N N 129 NCO N5 N N N 130 NCO N6 N N N 131 NCO HN11 H N N 132 NCO HN12 H N N 133 NCO HN13 H N N 134 NCO HN21 H N N 135 NCO HN22 H N N 136 NCO HN23 H N N 137 NCO HN31 H N N 138 NCO HN32 H N N 139 NCO HN33 H N N 140 NCO HN41 H N N 141 NCO HN42 H N N 142 NCO HN43 H N N 143 NCO HN51 H N N 144 NCO HN52 H N N 145 NCO HN53 H N N 146 NCO HN61 H N N 147 NCO HN62 H N N 148 NCO HN63 H N N 149 U OP3 O N N 150 U P P N N 151 U OP1 O N N 152 U OP2 O N N 153 U "O5'" O N N 154 U "C5'" C N N 155 U "C4'" C N R 156 U "O4'" O N N 157 U "C3'" C N S 158 U "O3'" O N N 159 U "C2'" C N R 160 U "O2'" O N N 161 U "C1'" C N R 162 U N1 N N N 163 U C2 C N N 164 U O2 O N N 165 U N3 N N N 166 U C4 C N N 167 U O4 O N N 168 U C5 C N N 169 U C6 C N N 170 U HOP3 H N N 171 U HOP2 H N N 172 U "H5'" H N N 173 U "H5''" H N N 174 U "H4'" H N N 175 U "H3'" H N N 176 U "HO3'" H N N 177 U "H2'" H N N 178 U "HO2'" H N N 179 U "H1'" H N N 180 U H3 H N N 181 U H5 H N N 182 U H6 H N N 183 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HPA N1 C2 sing Y N 116 HPA N1 C6 sing Y N 117 HPA N1 HN1 sing N N 118 HPA C2 N3 doub Y N 119 HPA C2 H2 sing N N 120 HPA N3 C4 sing Y N 121 HPA C4 C5 doub Y N 122 HPA C4 N9 sing Y N 123 HPA C5 C6 sing Y N 124 HPA C5 N7 sing Y N 125 HPA C6 O6 doub N N 126 HPA N7 C8 sing Y N 127 HPA N7 HN7 sing N N 128 HPA C8 N9 doub Y N 129 HPA C8 H8 sing N N 130 NCO CO N1 sing N N 131 NCO CO N2 sing N N 132 NCO CO N3 sing N N 133 NCO CO N4 sing N N 134 NCO CO N5 sing N N 135 NCO CO N6 sing N N 136 NCO N1 HN11 sing N N 137 NCO N1 HN12 sing N N 138 NCO N1 HN13 sing N N 139 NCO N2 HN21 sing N N 140 NCO N2 HN22 sing N N 141 NCO N2 HN23 sing N N 142 NCO N3 HN31 sing N N 143 NCO N3 HN32 sing N N 144 NCO N3 HN33 sing N N 145 NCO N4 HN41 sing N N 146 NCO N4 HN42 sing N N 147 NCO N4 HN43 sing N N 148 NCO N5 HN51 sing N N 149 NCO N5 HN52 sing N N 150 NCO N5 HN53 sing N N 151 NCO N6 HN61 sing N N 152 NCO N6 HN62 sing N N 153 NCO N6 HN63 sing N N 154 U OP3 P sing N N 155 U OP3 HOP3 sing N N 156 U P OP1 doub N N 157 U P OP2 sing N N 158 U P "O5'" sing N N 159 U OP2 HOP2 sing N N 160 U "O5'" "C5'" sing N N 161 U "C5'" "C4'" sing N N 162 U "C5'" "H5'" sing N N 163 U "C5'" "H5''" sing N N 164 U "C4'" "O4'" sing N N 165 U "C4'" "C3'" sing N N 166 U "C4'" "H4'" sing N N 167 U "O4'" "C1'" sing N N 168 U "C3'" "O3'" sing N N 169 U "C3'" "C2'" sing N N 170 U "C3'" "H3'" sing N N 171 U "O3'" "HO3'" sing N N 172 U "C2'" "O2'" sing N N 173 U "C2'" "C1'" sing N N 174 U "C2'" "H2'" sing N N 175 U "O2'" "HO2'" sing N N 176 U "C1'" N1 sing N N 177 U "C1'" "H1'" sing N N 178 U N1 C2 sing N N 179 U N1 C6 sing N N 180 U C2 O2 doub N N 181 U C2 N3 sing N N 182 U N3 C4 sing N N 183 U N3 H3 sing N N 184 U C4 O4 doub N N 185 U C4 C5 sing N N 186 U C5 C6 doub N N 187 U C5 H5 sing N N 188 U C6 H6 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5C7U 'double helix' 5C7U 'a-form double helix' 5C7U 'mismatched base pair' 5C7U 'internal loop' 5C7U 'triple helix' 5C7U 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 67 1_555 -0.965 -0.367 0.293 -0.981 -6.106 -0.001 1 B_G15:C81_B B 15 ? B 81 ? 19 1 1 A G 2 1_555 A C 66 1_555 -0.743 -0.253 0.242 -6.558 -9.529 3.159 2 B_G16:C80_B B 16 ? B 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 -0.141 -0.068 0.314 -0.373 -5.445 -6.295 3 B_A17:U79_B B 17 ? B 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 -0.043 -0.207 0.401 -8.133 -0.698 -2.676 4 B_C18:G78_B B 18 ? B 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.715 0.012 0.189 -0.605 -11.641 6.522 5 B_A19:U77_B B 19 ? B 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.163 -0.287 0.554 -6.587 -19.301 -2.672 6 B_U20:A76_B B 20 ? B 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.493 -0.221 0.199 2.383 -11.159 -6.864 7 B_A21:U75_B B 21 ? B 75 ? 20 1 1 A U 37 1_555 A U 33 1_555 -3.510 0.320 0.636 -33.045 29.284 -85.251 8 B_U51:U47_B B 51 ? B 47 ? ? ? 1 A A 38 1_555 A U 8 1_555 1.290 0.192 -0.652 -19.920 1.481 -1.497 9 B_A52:U22_B B 52 ? B 22 ? 20 1 1 A C 39 1_555 A G 32 1_555 -0.309 -0.178 -0.555 16.547 -3.062 -4.940 10 B_C53:G46_B B 53 ? B 46 ? 19 1 1 A U 11 1_555 A A 31 1_555 -0.932 -0.170 -0.252 13.674 -10.209 1.247 11 B_U25:A45_B B 25 ? B 45 ? 20 1 1 A G 13 1_555 A C 29 1_555 0.433 0.202 -0.151 1.522 10.417 -2.532 12 B_G27:C43_B B 27 ? B 43 ? 19 1 1 A C 14 1_555 A G 28 1_555 -0.019 0.078 -0.230 1.932 -3.255 -2.331 13 B_C28:G42_B B 28 ? B 42 ? 19 1 1 A G 15 1_555 A C 27 1_555 -0.294 -0.057 -0.038 -4.784 -1.290 6.219 14 B_G29:C41_B B 29 ? B 41 ? 19 1 1 A U 16 1_555 A A 26 1_555 -0.466 -0.287 -0.027 3.867 -0.328 0.468 15 B_U30:A40_B B 30 ? B 40 ? 20 1 1 A G 17 1_555 A C 25 1_555 -0.256 -0.009 0.190 11.082 -0.120 8.800 16 B_G31:C39_B B 31 ? B 39 ? 19 1 1 A C 46 1_555 A G 24 1_555 -0.448 -0.042 0.172 -20.358 -7.308 0.192 17 B_C60:G38_B B 60 ? B 38 ? 19 1 1 A A 19 1_555 A A 52 1_555 4.713 1.024 -0.030 -8.801 -5.383 -108.830 18 B_A33:A66_B B 33 ? B 66 ? 5 4 1 A U 20 1_555 A A 51 1_555 3.785 -1.474 0.082 -0.527 6.219 -100.641 19 B_U34:A65_B B 34 ? B 65 ? 24 4 1 A G 23 1_555 A C 47 1_555 0.054 0.063 0.233 7.835 -2.675 6.583 20 B_G37:C61_B B 37 ? B 61 ? 19 1 1 A C 40 1_555 A G 58 1_555 0.206 -0.130 -0.073 -11.299 -2.579 6.864 21 B_C54:G72_B B 54 ? B 72 ? 19 1 1 A G 41 1_555 A C 57 1_555 -0.667 -0.445 0.055 -8.580 -7.851 4.533 22 B_G55:C71_B B 55 ? B 71 ? 19 1 1 A G 42 1_555 A C 56 1_555 -1.805 -0.217 -0.125 -4.856 -5.779 0.547 23 B_G56:C70_B B 56 ? B 70 ? ? 1 1 A G 43 1_555 A U 55 1_555 -2.455 -0.568 0.277 -1.783 -3.959 0.997 24 B_G57:U69_B B 57 ? B 69 ? 28 1 1 A C 44 1_555 A G 54 1_555 0.128 -0.117 0.444 0.851 -10.339 6.032 25 B_C58:G68_B B 58 ? B 68 ? 19 1 1 A A 45 1_555 A U 53 1_555 0.718 -0.374 -0.413 -5.513 -3.904 -7.535 26 B_A59:U67_B B 59 ? B 67 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 67 1_555 A G 2 1_555 A C 66 1_555 -0.100 -2.197 3.245 -2.757 5.879 33.547 -4.614 -0.239 2.830 10.069 4.722 34.152 1 BB_G15G16:C80C81_BB B 15 ? B 81 ? B 16 ? B 80 ? 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 -0.715 -1.474 3.029 -0.783 0.925 37.139 -2.426 1.025 3.006 1.453 1.229 37.158 2 BB_G16A17:U79C80_BB B 16 ? B 80 ? B 17 ? B 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.524 -2.072 3.445 0.965 3.669 32.311 -4.353 -0.764 3.210 6.565 -1.726 32.528 3 BB_A17C18:G78U79_BB B 17 ? B 79 ? B 18 ? B 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 0.606 -1.831 2.957 4.835 2.280 26.142 -4.503 -0.180 2.853 4.974 -10.549 26.674 4 BB_C18A19:U77G78_BB B 18 ? B 78 ? B 19 ? B 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 0.182 -1.230 3.410 0.497 8.984 36.684 -3.063 -0.217 3.038 14.017 -0.776 37.734 5 BB_A19U20:A76U77_BB B 19 ? B 77 ? B 20 ? B 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.335 -1.612 2.759 5.761 14.441 33.453 -4.042 0.062 1.952 23.572 -9.403 36.795 6 BB_U20A21:U75A76_BB B 20 ? B 76 ? B 21 ? B 75 ? 1 A A 7 1_555 A U 61 1_555 A U 37 1_555 A U 33 1_555 -1.581 5.390 2.755 12.585 3.566 161.141 2.724 0.827 2.754 1.807 -6.378 161.265 7 BB_A21U51:U47U75_BB B 21 ? B 75 ? B 51 ? B 47 ? 1 A U 37 1_555 A U 33 1_555 A A 38 1_555 A U 8 1_555 0.396 -0.552 3.455 2.023 19.624 6.476 -9.627 -0.265 0.600 71.624 -7.385 20.754 8 BB_U51A52:U22U47_BB B 51 ? B 47 ? B 52 ? B 22 ? 1 A A 38 1_555 A U 8 1_555 A C 39 1_555 A G 32 1_555 1.988 -0.232 2.428 3.255 7.135 34.842 -1.167 -2.885 2.503 11.732 -5.352 35.687 9 BB_A52C53:G46U22_BB B 52 ? B 22 ? B 53 ? B 46 ? 1 A C 39 1_555 A G 32 1_555 A U 11 1_555 A A 31 1_555 -1.888 -0.485 3.262 -10.376 5.503 51.786 -0.913 1.419 3.489 6.210 11.709 53.012 10 BB_C53U25:A45G46_BB B 53 ? B 46 ? B 25 ? B 45 ? 1 A G 13 1_555 A C 29 1_555 A C 14 1_555 A G 28 1_555 0.316 -2.137 3.431 2.519 7.439 28.629 -5.697 -0.101 2.816 14.698 -4.978 29.665 11 BB_G27C28:G42C43_BB B 27 ? B 43 ? B 28 ? B 42 ? 1 A C 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 0.411 -2.227 3.181 -0.737 7.688 30.766 -5.337 -0.873 2.553 14.211 1.362 31.697 12 BB_C28G29:C41G42_BB B 28 ? B 42 ? B 29 ? B 41 ? 1 A G 15 1_555 A C 27 1_555 A U 16 1_555 A A 26 1_555 -0.108 -1.337 3.012 0.824 1.647 27.172 -3.213 0.417 2.923 3.501 -1.751 27.233 13 BB_G29U30:A40C41_BB B 29 ? B 41 ? B 30 ? B 40 ? 1 A U 16 1_555 A A 26 1_555 A G 17 1_555 A C 25 1_555 1.048 -1.813 2.712 -3.400 5.409 28.744 -4.450 -2.616 2.206 10.728 6.743 29.431 14 BB_U30G31:C39A40_BB B 30 ? B 40 ? B 31 ? B 39 ? 1 A C 46 1_555 A G 24 1_555 A A 19 1_555 A A 52 1_555 0.334 -6.678 1.013 -7.326 -12.053 -116.945 3.937 0.177 0.595 7.057 -4.289 -117.476 15 BB_C60A33:A66G38_BB B 60 ? B 38 ? B 33 ? B 66 ? 1 A A 19 1_555 A A 52 1_555 A U 20 1_555 A A 51 1_555 -0.112 -1.215 3.365 10.373 4.559 34.095 -2.628 1.672 3.021 7.522 -17.115 35.875 16 BB_A33U34:A65A66_BB B 33 ? B 66 ? B 34 ? B 65 ? 1 A C 40 1_555 A G 58 1_555 A G 41 1_555 A C 57 1_555 0.119 -1.033 3.132 -0.860 9.399 31.252 -3.332 -0.348 2.711 16.968 1.552 32.612 17 BB_C54G55:C71G72_BB B 54 ? B 72 ? B 55 ? B 71 ? 1 A G 41 1_555 A C 57 1_555 A G 42 1_555 A C 56 1_555 -0.097 -1.286 2.944 -0.955 8.857 25.793 -4.582 0.007 2.380 19.129 2.063 27.263 18 BB_G55G56:C70C71_BB B 55 ? B 71 ? B 56 ? B 70 ? 1 A G 42 1_555 A C 56 1_555 A G 43 1_555 A U 55 1_555 0.508 -1.180 3.107 -7.302 2.905 33.062 -2.447 -1.945 2.823 5.017 12.611 33.958 19 BB_G56G57:U69C70_BB B 56 ? B 70 ? B 57 ? B 69 ? 1 A G 43 1_555 A U 55 1_555 A C 44 1_555 A G 54 1_555 0.117 -0.910 3.087 -0.433 1.600 46.135 -1.289 -0.184 3.055 2.041 0.553 46.163 20 BB_G57C58:G68U69_BB B 57 ? B 69 ? B 58 ? B 68 ? 1 A C 44 1_555 A G 54 1_555 A A 45 1_555 A U 53 1_555 0.043 -2.155 3.761 4.145 -3.633 33.478 -3.002 0.715 3.943 -6.255 -7.136 33.916 21 BB_C58A59:U67G68_BB B 58 ? B 68 ? B 59 ? B 67 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Defense Threat Reduction Agency (DTRA)' 'United States' HDTRA1-13-1-0004 1 'National Aeronautic Space Administration (NASA, United States)' 'United States' NNX10AT28G 2 'Templeton World Charitable Fund' 'United States' ? 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 HYPOXANTHINE HPA # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FE5 _pdbx_initial_refinement_model.details ? #